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docs(docs): rebuilt docs

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Emily Boudreaux
2025-11-04 14:04:26 -05:00
parent e87206a4a3
commit 77e6a918a5
710 changed files with 14858 additions and 5874 deletions
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docs/html/classgridfire_1_1_multiscale_partitioning_engine_view.js
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@@ -4,17 +4,20 @@ var classgridfire_1_1_multiscale_partitioning_engine_view =
[ "EigenFunctor", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor" ],
[ "QSEGroup", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group" ],
[ "QSEPartition", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a34b5fdb2078e748edfbe6846ecadd681", null ],
[ "MultiscalePartitioningEngineView", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a0df457c0f0f6f403a295335c84fd828f", null ],
[ "MultiscalePartitioningEngineView", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a1b3720628b22f038391949fffe6fc962", null ],
[ "analyzeTimescalePoolConnectivity", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a05e45017bbb772c586f483bd527004ee", null ],
[ "buildConnectivityGraph", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a5d1c11f3c0883385833462dd088f6f89", null ],
[ "calculateEpsDerivatives", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a99f9116d5a18afcbf0e808ef111d1be8", null ],
[ "calculateMolarReactionFlow", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a87687a960f263a4e1bc035e4d0a345db", null ],
[ "calculateRHSAndEnergy", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a5c1ab19bc3394a5d29241ef02073c4cb", null ],
[ "collectComposition", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a7056e235c56be39e2a672988962b3948", null ],
[ "constructCandidateGroups", "classgridfire_1_1_multiscale_partitioning_engine_view.html#aaabaae8e33ca8a05a2aa1f374e792795", null ],
[ "equilibrateNetwork", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a2f0c45d4e2b2f9de5d961088f3ab0a9a", null ],
[ "equilibrateNetwork", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a1b17f94386882ea1524147782b7a1ddc", null ],
[ "exportToDot", "classgridfire_1_1_multiscale_partitioning_engine_view.html#adfa1e133c49c0ef78b374d37e90a3372", null ],
[ "exportToDot", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a2e3c7d6320cd0fdc51b3a40d1ec6b262", null ],
[ "generateJacobianMatrix", "classgridfire_1_1_multiscale_partitioning_engine_view.html#ab9f71bc9a1c0f98ec9cc1c7da00fd975", null ],
[ "generateJacobianMatrix", "classgridfire_1_1_multiscale_partitioning_engine_view.html#ac683ef0ba25356bc587749b69a582286", null ],
[ "generateJacobianMatrix", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a31e636745b8c427cee0319e6c61039be", null ],
[ "generateStoichiometryMatrix", "classgridfire_1_1_multiscale_partitioning_engine_view.html#abe76a46784b1ebc8ad67a9eec40d369a", null ],
[ "getBaseEngine", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a22bd1f0e821ed415611d75bac67063d1", null ],
[ "getDynamicSpecies", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a1e04e8cb8c84b1bd033ac599accf0888", null ],
@@ -23,11 +26,14 @@ var classgridfire_1_1_multiscale_partitioning_engine_view =
[ "getNetworkReactions", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a253e51d6dc7226a863a123683049af61", null ],
[ "getNetworkSpecies", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a696f74f5135bbd62169b6577f92fee80", null ],
[ "getScreeningModel", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a7bfb4e6fec2f337a1dea69e3d4f1fc82", null ],
[ "getSpeciesDestructionTimescales", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a1a14b0c7ec882b2ad2370f7aa729b9f9", null ],
[ "getSpeciesDestructionTimescales", "classgridfire_1_1_multiscale_partitioning_engine_view.html#accbbe1bd96672e74919d00387673f180", null ],
[ "getSpeciesIndex", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a8db21995e6878f4043f3a5a45bf36d5e", null ],
[ "getSpeciesTimescales", "classgridfire_1_1_multiscale_partitioning_engine_view.html#aea2c3d2ae6ddf77bd4a9b07b86f3306b", null ],
[ "getStoichiometryMatrixEntry", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a7140384baaaa0bd05ca448a0d8fec471", null ],
[ "identifyMeanSlowestPool", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a70f4a0c4123b7f78305f64eb11beeeeb", null ],
[ "involvesSpecies", "classgridfire_1_1_multiscale_partitioning_engine_view.html#adde288ec903d0cf45cfc3031e3a1fa8b", null ],
[ "involvesSpeciesInDynamic", "classgridfire_1_1_multiscale_partitioning_engine_view.html#ae4961ef6ad6db601bfaa0721ede02369", null ],
[ "involvesSpeciesInQSE", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a3e23f9e7c9e72bf1d3de15f98157afdb", null ],
[ "isStale", "classgridfire_1_1_multiscale_partitioning_engine_view.html#ae7847959fc5af2b83f5446dd73567b46", null ],
[ "mapNetInToMolarAbundanceVector", "classgridfire_1_1_multiscale_partitioning_engine_view.html#aada497e8df74a295fdf5df7d7cdf64e0", null ],
[ "partitionByTimescale", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a7aa4eb7a0d6e6d04b3e1aa1b1fb7f3f6", null ],
@@ -43,7 +49,7 @@ var classgridfire_1_1_multiscale_partitioning_engine_view =
[ "m_activeSpeciesIndices", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a57d97b11e80fa78ab5f509fce1f156b8", null ],
[ "m_algebraic_abundances", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a3af2b37ce21829d9554d702cad074470", null ],
[ "m_algebraic_species", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a4656c05b8235dbf4ec698b03a716a8c8", null ],
[ "m_baseEngine", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a0437c51f94bf834a11adf481b2afad93", null ],
[ "m_baseEngine", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a999b68226d658c9df2f4a3b890b9e5d1", null ],
[ "m_cacheStats", "classgridfire_1_1_multiscale_partitioning_engine_view.html#aa81057b96cf46986151a5e8ef99a017a", null ],
[ "m_dynamic_species", "classgridfire_1_1_multiscale_partitioning_engine_view.html#aec6126b5c4a397d090790d7b75f9f70f", null ],
[ "m_logger", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a7d357c775dcbb253a4001d172805380a", null ],