diff --git a/docs/html/_2_users_2tboudreaux_2_programming_24_d_s_t_a_r_2_grid_fire_2src_2include_2gridfire_2engine_2engine_approx8_8h-example.html b/docs/html/_2_users_2tboudreaux_2_programming_24_d_s_t_a_r_2_grid_fire_2src_2include_2gridfire_2engine_2engine_approx8_8h-example.html index 8c7845fd..40d12aba 100644 --- a/docs/html/_2_users_2tboudreaux_2_programming_24_d_s_t_a_r_2_grid_fire_2src_2include_2gridfire_2engine_2engine_approx8_8h-example.html +++ b/docs/html/_2_users_2tboudreaux_2_programming_24_d_s_t_a_r_2_grid_fire_2src_2include_2gridfire_2engine_2engine_approx8_8h-example.html @@ -29,7 +29,7 @@ -
GridFire 0.6.0 +
GridFire v0.7.0-alpha
General Purpose Nuclear Network
diff --git a/docs/html/_c_v_o_d_e__solver__strategy_8cpp.html b/docs/html/_c_v_o_d_e__solver__strategy_8cpp.html index 7d936a3d..35efc7ea 100644 --- a/docs/html/_c_v_o_d_e__solver__strategy_8cpp.html +++ b/docs/html/_c_v_o_d_e__solver__strategy_8cpp.html @@ -29,7 +29,7 @@ -
GridFire 0.6.0 +
GridFire v0.7.0-alpha
General Purpose Nuclear Network
@@ -120,6 +120,7 @@ $(function(){initNavTree('_c_v_o_d_e__solver__strategy_8cpp.html',''); initResiz #include "gridfire/engine/engine_graph.h"
#include "gridfire/solver/strategies/triggers/engine_partitioning_trigger.h"
#include "gridfire/trigger/procedures/trigger_pprint.h"
+#include "gridfire/utils/general_composition.h"
diff --git a/docs/html/_c_v_o_d_e__solver__strategy_8h.html b/docs/html/_c_v_o_d_e__solver__strategy_8h.html index eaa301d3..df317244 100644 --- a/docs/html/_c_v_o_d_e__solver__strategy_8h.html +++ b/docs/html/_c_v_o_d_e__solver__strategy_8h.html @@ -29,7 +29,7 @@ diff --git a/docs/html/annotated.html b/docs/html/annotated.html index 8e4966ca..3d6d0d36 100644 --- a/docs/html/annotated.html +++ b/docs/html/annotated.html @@ -29,7 +29,7 @@ @@ -105,44 +105,51 @@ $(function(){initNavTree('annotated.html',''); initResizable(true); });
Here are the classes, structs, unions and interfaces with brief descriptions:
[detail level 12345]

Namespaces
-
GridFire 0.6.0 +
GridFire v0.7.0-alpha
General Purpose Nuclear Network
-
GridFire 0.6.0 +
GridFire v0.7.0-alpha
General Purpose Nuclear Network
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + - + - + @@ -150,57 +157,58 @@ $(function(){initNavTree('annotated.html',''); initResizable(true); }); - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + - - - - - - - - + + + + + + + + @@ -213,17 +221,19 @@ $(function(){initNavTree('annotated.html',''); initResizable(true); }); - - - - - - - - - - - + + + + + + + + + + + + +
 ▼Ngridfire
 ▼Napprox8
 CApprox8NetContains constants and arrays related to the nuclear network
 CApprox8NetworkClass for the Approx8 nuclear reaction network
 CJacobianFunctor to calculate the Jacobian matrix for implicit solvers
 CODEFunctor to calculate the derivatives for the ODE solver
 ▼Nexceptions
 CEngineError
 CFailedToPartitionEngineError
 CNetworkResizedError
 CStaleEngineError
 ►CStaleEngineTrigger
 CUnableToSetNetworkReactionsError
 ▼Nexpectations
 CEngineError
 CEngineIndexError
 CStaleEngineError
 ▼Nio
 CMESANetworkFileParserA parser for MESA-format network files
 CNetworkFileParserAn abstract base class for network file parsers
 CSimpleReactionListFileParserA parser for simple text files containing a list of reactions
 ▼Npartition
 ►Nrecord
 CCompositePartitionFunctionCombines multiple PartitionFunction instances into a single composite strategy
 CGroundStatePartitionFunctionPartition function implementation for nuclear ground states
 CPartitionFunctionAbstract interface for evaluating nuclear partition functions
 ►CRauscherThielemannPartitionFunctionPartition function using Rauscher-Thielemann tabulated normalized G-values
 ▼Nrates
 ►Nweak
 ►Napprox8
 ►Nexceptions
 ►Nexpectations
 ►Nio
 ►Npartition
 ►Nrates
 ▼Nreaclib
 CReactionRecord
 ▼Nreaction
 CLogicalReaclibReactionRepresents a "logical" reaction that aggregates rates from multiple sources
 CRateCoefficientSetHolds the seven coefficients for the REACLIB rate equation
 CReaclibReaction
 CReactionRepresents a single nuclear reaction from a specific data source
 CReactionSet
 ▼Nscreening
 CBareScreeningModelA screening model that applies no screening effect
 CIntermediateScreeningModel
 CScreeningModelAn abstract base class for plasma screening models
 CWeakScreeningModelImplements the weak screening model based on the Debye-Hückel approximation
 ▼Nsolver
 ►CCVODESolverStrategyStiff ODE integrator backed by SUNDIALS CVODE (BDF) for network + energy
 CNetworkSolverStrategyAbstract base class for network solver strategies
 CSolverContextBaseBase class for solver callback contexts
 ▼Ntrigger
 ►Nsolver
 ►Nreaclib
 ►Nreaction
 ►Nscreening
 ►Nsolver
 ►Ntrigger
 CAndTriggerLogical conjunction of two triggers with short-circuit evaluation
 CEveryNthTriggerPass-through trigger that fires every Nth time its child trigger is true
 CLogicalTrigger
 CNotTriggerLogical negation of a trigger
 COrTriggerLogical disjunction of two triggers with short-circuit evaluation
 CTriggerGeneric trigger interface for signaling events/conditions during integration
 CTriggerResult
 ▼Nutils
 CColumn
 CColumnBase
 ▼CAdaptiveEngineViewAn engine view that dynamically adapts the reaction network based on runtime conditions
 CReactionFlowA struct to hold a reaction and its flow rate
 ►Nutils
 ►CAdaptiveEngineViewAn engine view that dynamically adapts the reaction network based on runtime conditions
 CDefinedEngineView
 CDynamicEngineAbstract class for engines supporting Jacobian and stoichiometry operations
 CEnergyDerivatives
 CEngineAbstract base class for a reaction network engine
 CEngineViewAbstract base class for a "view" of a reaction network engine
 CFileDefinedEngineView
 ▼CGraphEngineA reaction network engine that uses a graph-based representation
 CAtomicReverseRate
 Cconstants
 CPrecomputedReaction
 ▼CMultiscalePartitioningEngineViewAn engine view that partitions the reaction network into multiple groups based on timescales
 CCacheStatsStruct for tracking cache statistics
 CEigenFunctorFunctor for solving QSE abundances using Eigen's nonlinear optimization
 CQSEGroupStruct representing a QSE group
 ►CGraphEngineA reaction network engine that uses a graph-based representation
 ►CMultiscalePartitioningEngineViewAn engine view that partitions the reaction network into multiple groups based on timescales
 CNetIn
 CNetOut
 CNetwork
 CStepDerivativesStructure holding derivatives and energy generation for a network step
 ▼NstdSTL namespace
 Chash< gridfire::QSECacheKey >
 Chash< gridfire::reaction::Reaction >
 Chash< gridfire::reaction::ReactionSet >
 CPyDynamicEngine
 CPyDynamicEngineView
 CPyDynamicNetworkSolverStrategy
 CPyEngine
 CPyEngineView
 CPyNetworkFileParser
 CPyPartitionFunction
 CPyScreening
 CSolverPluginInterface
 Chash< gridfire::rates::weak::TableAxes >
 Chash< gridfire::reaction::Reaction >
 Chash< gridfire::reaction::ReactionSet >
 CPyDynamicEngine
 CPyDynamicEngineView
 CPyDynamicNetworkSolverStrategy
 CPyEngine
 CPyEngineView
 CPyNetworkFileParser
 CPyPartitionFunction
 CPyScreening
 CPySolverContextBase
 CSolverPluginInterface
diff --git a/docs/html/annotated_dup.js b/docs/html/annotated_dup.js index bc23fcaa..a87446cc 100644 --- a/docs/html/annotated_dup.js +++ b/docs/html/annotated_dup.js @@ -8,12 +8,19 @@ var annotated_dup = [ "ODE", "structgridfire_1_1approx8_1_1_o_d_e.html", "structgridfire_1_1approx8_1_1_o_d_e" ] ] ], [ "exceptions", "namespacegridfire_1_1exceptions.html", [ + [ "BadCollectionError", "classgridfire_1_1exceptions_1_1_bad_collection_error.html", "classgridfire_1_1exceptions_1_1_bad_collection_error" ], [ "EngineError", "classgridfire_1_1exceptions_1_1_engine_error.html", null ], [ "FailedToPartitionEngineError", "classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html", "classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error" ], + [ "HashingError", "classgridfire_1_1exceptions_1_1_hashing_error.html", "classgridfire_1_1exceptions_1_1_hashing_error" ], + [ "JacobianError", "classgridfire_1_1exceptions_1_1_jacobian_error.html", null ], [ "NetworkResizedError", "classgridfire_1_1exceptions_1_1_network_resized_error.html", "classgridfire_1_1exceptions_1_1_network_resized_error" ], [ "StaleEngineError", "classgridfire_1_1exceptions_1_1_stale_engine_error.html", "classgridfire_1_1exceptions_1_1_stale_engine_error" ], [ "StaleEngineTrigger", "classgridfire_1_1exceptions_1_1_stale_engine_trigger.html", "classgridfire_1_1exceptions_1_1_stale_engine_trigger" ], - [ "UnableToSetNetworkReactionsError", "classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html", "classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error" ] + [ "StaleJacobianError", "classgridfire_1_1exceptions_1_1_stale_jacobian_error.html", "classgridfire_1_1exceptions_1_1_stale_jacobian_error" ], + [ "UnableToSetNetworkReactionsError", "classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html", "classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error" ], + [ "UninitializedJacobianError", "classgridfire_1_1exceptions_1_1_uninitialized_jacobian_error.html", "classgridfire_1_1exceptions_1_1_uninitialized_jacobian_error" ], + [ "UnknownJacobianError", "classgridfire_1_1exceptions_1_1_unknown_jacobian_error.html", "classgridfire_1_1exceptions_1_1_unknown_jacobian_error" ], + [ "UtilityError", "classgridfire_1_1exceptions_1_1_utility_error.html", null ] ] ], [ "expectations", "namespacegridfire_1_1expectations.html", [ [ "EngineError", "structgridfire_1_1expectations_1_1_engine_error.html", "structgridfire_1_1expectations_1_1_engine_error" ], @@ -67,11 +74,12 @@ var annotated_dup = [ "solver", "namespacegridfire_1_1solver.html", [ [ "CVODESolverStrategy", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy" ], [ "NetworkSolverStrategy", "classgridfire_1_1solver_1_1_network_solver_strategy.html", "classgridfire_1_1solver_1_1_network_solver_strategy" ], - [ "SolverContextBase", "structgridfire_1_1solver_1_1_solver_context_base.html", "structgridfire_1_1solver_1_1_solver_context_base" ] + [ "SolverContextBase", "classgridfire_1_1solver_1_1_solver_context_base.html", "classgridfire_1_1solver_1_1_solver_context_base" ] ] ], [ "trigger", "namespacegridfire_1_1trigger.html", [ [ "solver", "namespacegridfire_1_1trigger_1_1solver.html", [ [ "CVODE", "namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html", [ + [ "ConvergenceFailureTrigger", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.html", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger" ], [ "OffDiagonalTrigger", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger" ], [ "SimulationTimeTrigger", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger" ], [ "TimestepCollapseTrigger", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger" ] @@ -111,6 +119,7 @@ var annotated_dup = ] ], [ "std", "namespacestd.html", [ [ "hash< gridfire::QSECacheKey >", "structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html", "structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4" ], + [ "hash< gridfire::rates::weak::TableAxes >", "structstd_1_1hash_3_01gridfire_1_1rates_1_1weak_1_1_table_axes_01_4.html", "structstd_1_1hash_3_01gridfire_1_1rates_1_1weak_1_1_table_axes_01_4" ], [ "hash< gridfire::reaction::Reaction >", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4" ], [ "hash< gridfire::reaction::ReactionSet >", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4" ] ] ], @@ -122,5 +131,6 @@ var annotated_dup = [ "PyNetworkFileParser", "class_py_network_file_parser.html", "class_py_network_file_parser" ], [ "PyPartitionFunction", "class_py_partition_function.html", "class_py_partition_function" ], [ "PyScreening", "class_py_screening.html", "class_py_screening" ], + [ "PySolverContextBase", "class_py_solver_context_base.html", "class_py_solver_context_base" ], [ "SolverPluginInterface", "class_solver_plugin_interface.html", "class_solver_plugin_interface" ] ]; \ No newline at end of file diff --git a/docs/html/bindings_8cpp.html b/docs/html/bindings_8cpp.html index c38739a1..8cdefd76 100644 --- a/docs/html/bindings_8cpp.html +++ b/docs/html/bindings_8cpp.html @@ -29,7 +29,7 @@ -
GridFire 0.6.0 +
GridFire v0.7.0-alpha
General Purpose Nuclear Network
diff --git a/docs/html/building_8h.html b/docs/html/building_8h.html index 494c5ede..ba4d8695 100644 --- a/docs/html/building_8h.html +++ b/docs/html/building_8h.html @@ -29,7 +29,7 @@ -
GridFire 0.6.0 +
GridFire v0.7.0-alpha
General Purpose Nuclear Network
diff --git a/docs/html/class_py_dynamic_engine-members.html b/docs/html/class_py_dynamic_engine-members.html index c9988147..97171e61 100644 --- a/docs/html/class_py_dynamic_engine-members.html +++ b/docs/html/class_py_dynamic_engine-members.html @@ -29,7 +29,7 @@ -
GridFire 0.6.0 +
GridFire v0.7.0-alpha
General Purpose Nuclear Network
@@ -105,29 +105,23 @@ $(function(){initNavTree('class_py_dynamic_engine.html',''); initResizable(true)

This is the complete list of members for PyDynamicEngine, including all inherited members.

- - - - - - - - - + + + + + + + - - - - - - - + + + + + - - - - + + diff --git a/docs/html/class_py_dynamic_engine.html b/docs/html/class_py_dynamic_engine.html index f0512c43..b230a2e8 100644 --- a/docs/html/class_py_dynamic_engine.html +++ b/docs/html/class_py_dynamic_engine.html @@ -29,7 +29,7 @@ @@ -124,30 +124,38 @@ Public Member Functions - - - - - - - - + + + + + + + + + + + + + - - - - + + + + + + - - - - + + + + + @@ -174,36 +182,16 @@ Public Member Functions - - - - - - - - - - - - - - - - - - - - - - - + + + + + + - - -
calculateEpsDerivatives(const fourdst::composition::Composition &comp, double T9, double rho) const =0gridfire::DynamicEnginepure virtual
calculateMolarReactionFlow(const gridfire::reaction::Reaction &reaction, const std::vector< double > &Y, double T9, double rho) const overridePyDynamicEngine
gridfire::DynamicEngine::calculateMolarReactionFlow(const reaction::Reaction &reaction, const fourdst::composition::Composition &comp, double T9, double rho) const =0gridfire::DynamicEnginepure virtual
calculateRHSAndEnergy(const std::vector< double > &Y, double T9, double rho) const overridePyDynamicEngine
gridfire::DynamicEngine::calculateRHSAndEnergy(const fourdst::composition::Composition &comp, double T9, double rho) const =0gridfire::Enginepure virtual
generateJacobianMatrix(const std::vector< double > &Y_dynamic, double T9, double rho) const overridePyDynamicEngine
generateJacobianMatrix(const std::vector< double > &Y_dynamic, double T9, double rho, const gridfire::SparsityPattern &sparsityPattern) const overridePyDynamicEngine
gridfire::DynamicEngine::generateJacobianMatrix(const fourdst::composition::Composition &comp, double T9, double rho) const =0gridfire::DynamicEnginepure virtual
gridfire::DynamicEngine::generateJacobianMatrix(const fourdst::composition::Composition &comp, double T9, double rho, const SparsityPattern &sparsityPattern) constgridfire::DynamicEngineinlinevirtual
calculateEpsDerivatives(const fourdst::composition::Composition &comp, double T9, double rho) const overridePyDynamicEnginevirtual
calculateMolarReactionFlow(const gridfire::reaction::Reaction &reaction, const fourdst::composition::Composition &comp, double T9, double rho) const overridePyDynamicEnginevirtual
calculateRHSAndEnergy(const fourdst::composition::Composition &comp, double T9, double rho) const overridePyDynamicEnginevirtual
collectComposition(fourdst::composition::Composition &comp) const overridePyDynamicEnginevirtual
generateJacobianMatrix(const fourdst::composition::Composition &comp, double T9, double rho) const overridePyDynamicEnginevirtual
generateJacobianMatrix(const fourdst::composition::Composition &comp, double T9, double rho, const std::vector< fourdst::atomic::Species > &activeSpecies) const overridePyDynamicEnginevirtual
generateJacobianMatrix(const fourdst::composition::Composition &comp, double T9, double rho, const gridfire::SparsityPattern &sparsityPattern) const overridePyDynamicEnginevirtual
generateStoichiometryMatrix() overridePyDynamicEnginevirtual
getDepth() const overridePyDynamicEngineinlinevirtual
getJacobianMatrixEntry(int i, int j) const overridePyDynamicEngine
gridfire::DynamicEngine::getJacobianMatrixEntry(const fourdst::atomic::Species &rowSpecies, const fourdst::atomic::Species &colSpecies) const =0gridfire::DynamicEnginepure virtual
getNetworkReactions() const overridePyDynamicEnginevirtual
getNetworkSpecies() const overridePyDynamicEnginevirtual
getScreeningModel() const overridePyDynamicEnginevirtual
getSpeciesDestructionTimescales(const std::vector< double > &Y, double T9, double rho) const overridePyDynamicEngine
gridfire::DynamicEngine::getSpeciesDestructionTimescales(const fourdst::composition::Composition &comp, double T9, double rho) const =0gridfire::DynamicEnginepure virtual
getJacobianMatrixEntry(const fourdst::atomic::Species &rowSpecies, const fourdst::atomic::Species &colSpecies) const overridePyDynamicEnginevirtual
getNetworkReactions() const overridePyDynamicEnginevirtual
getNetworkSpecies() const overridePyDynamicEnginevirtual
getScreeningModel() const overridePyDynamicEnginevirtual
getSpeciesDestructionTimescales(const fourdst::composition::Composition &comp, double T9, double rho) const overridePyDynamicEnginevirtual
getSpeciesIndex(const fourdst::atomic::Species &species) const overridePyDynamicEnginevirtual
getSpeciesTimescales(const std::vector< double > &Y, double T9, double rho) const overridePyDynamicEngine
gridfire::DynamicEngine::getSpeciesTimescales(const fourdst::composition::Composition &comp, double T9, double rho) const =0gridfire::DynamicEnginepure virtual
getStoichiometryMatrixEntry(int speciesIndex, int reactionIndex) const overridePyDynamicEngine
gridfire::DynamicEngine::getStoichiometryMatrixEntry(const fourdst::atomic::Species &species, const reaction::Reaction &reaction) const =0gridfire::DynamicEnginepure virtual
getSpeciesTimescales(const fourdst::composition::Composition &comp, double T9, double rho) const overridePyDynamicEnginevirtual
getStoichiometryMatrixEntry(const fourdst::atomic::Species &species, const gridfire::reaction::Reaction &reaction) const overridePyDynamicEnginevirtual
isStale(const gridfire::NetIn &netIn) overridePyDynamicEnginevirtual
m_species_cachePyDynamicEnginemutableprivate
mapNetInToMolarAbundanceVector(const gridfire::NetIn &netIn) const overridePyDynamicEnginevirtual
-
GridFire 0.6.0 +
GridFire v0.7.0-alpha
General Purpose Nuclear Network
const std::vector< fourdst::atomic::Species > & getNetworkSpecies () const override
 PyDynamicEngine Implementation ///.
 
std::expected< gridfire::StepDerivatives< double >, gridfire::expectations::StaleEngineError > calculateRHSAndEnergy (const std::vector< double > &Y, double T9, double rho) const override
 
void generateJacobianMatrix (const std::vector< double > &Y_dynamic, double T9, double rho) const override
 
void generateJacobianMatrix (const std::vector< double > &Y_dynamic, double T9, double rho, const gridfire::SparsityPattern &sparsityPattern) const override
 
double getJacobianMatrixEntry (int i, int j) const override
 
std::expected< gridfire::StepDerivatives< double >, gridfire::expectations::StaleEngineError > calculateRHSAndEnergy (const fourdst::composition::Composition &comp, double T9, double rho) const override
 Calculate the right-hand side (dY/dt) and energy generation.
 
void generateJacobianMatrix (const fourdst::composition::Composition &comp, double T9, double rho) const override
 Generate the Jacobian matrix for the current state.
 
void generateJacobianMatrix (const fourdst::composition::Composition &comp, double T9, double rho, const std::vector< fourdst::atomic::Species > &activeSpecies) const override
 
void generateJacobianMatrix (const fourdst::composition::Composition &comp, double T9, double rho, const gridfire::SparsityPattern &sparsityPattern) const override
 
double getJacobianMatrixEntry (const fourdst::atomic::Species &rowSpecies, const fourdst::atomic::Species &colSpecies) const override
 Get an entry from the previously generated Jacobian matrix.
 
void generateStoichiometryMatrix () override
 Generate the stoichiometry matrix for the network.
 
int getStoichiometryMatrixEntry (int speciesIndex, int reactionIndex) const override
 
double calculateMolarReactionFlow (const gridfire::reaction::Reaction &reaction, const std::vector< double > &Y, double T9, double rho) const override
 
int getStoichiometryMatrixEntry (const fourdst::atomic::Species &species, const gridfire::reaction::Reaction &reaction) const override
 Get an entry from the stoichiometry matrix.
 
double calculateMolarReactionFlow (const gridfire::reaction::Reaction &reaction, const fourdst::composition::Composition &comp, double T9, double rho) const override
 Calculate the molar reaction flow for a given reaction.
 
const gridfire::reaction::ReactionSet & getNetworkReactions () const override
 Get the set of logical reactions in the network.
 
void setNetworkReactions (const gridfire::reaction::ReactionSet &reactions) override
 
std::expected< std::unordered_map< fourdst::atomic::Species, double >, gridfire::expectations::StaleEngineError > getSpeciesTimescales (const std::vector< double > &Y, double T9, double rho) const override
 
std::expected< std::unordered_map< fourdst::atomic::Species, double >, gridfire::expectations::StaleEngineError > getSpeciesDestructionTimescales (const std::vector< double > &Y, double T9, double rho) const override
 
std::expected< std::unordered_map< fourdst::atomic::Species, double >, gridfire::expectations::StaleEngineError > getSpeciesTimescales (const fourdst::composition::Composition &comp, double T9, double rho) const override
 Compute timescales for all species in the network.
 
std::expected< std::unordered_map< fourdst::atomic::Species, double >, gridfire::expectations::StaleEngineError > getSpeciesDestructionTimescales (const fourdst::composition::Composition &comp, double T9, double rho) const override
 
fourdst::composition::Composition update (const gridfire::NetIn &netIn) override
 Update the internal state of the engine.
 
void rebuild (const fourdst::composition::Composition &comp, gridfire::BuildDepthType depth) override
 Rebuild the network with a specified depth.
 
- Public Member Functions inherited from gridfire::DynamicEngine
virtual void generateJacobianMatrix (const fourdst::composition::Composition &comp, double T9, double rho) const =0
 Generate the Jacobian matrix for the current state.
 
virtual void generateJacobianMatrix (const fourdst::composition::Composition &comp, double T9, double rho, const SparsityPattern &sparsityPattern) const
 
virtual double getJacobianMatrixEntry (const fourdst::atomic::Species &rowSpecies, const fourdst::atomic::Species &colSpecies) const =0
 Get an entry from the previously generated Jacobian matrix.
 
virtual int getStoichiometryMatrixEntry (const fourdst::atomic::Species &species, const reaction::Reaction &reaction) const =0
 Get an entry from the stoichiometry matrix.
 
virtual double calculateMolarReactionFlow (const reaction::Reaction &reaction, const fourdst::composition::Composition &comp, double T9, double rho) const =0
 Calculate the molar reaction flow for a given reaction.
 
virtual EnergyDerivatives calculateEpsDerivatives (const fourdst::composition::Composition &comp, double T9, double rho) const =0
 Calculate the derivatives of the energy generation rate with respect to T and rho.
 
virtual std::expected< std::unordered_map< fourdst::atomic::Species, double >, expectations::StaleEngineError > getSpeciesTimescales (const fourdst::composition::Composition &comp, double T9, double rho) const =0
 Compute timescales for all species in the network.
 
virtual std::expected< std::unordered_map< fourdst::atomic::Species, double >, expectations::StaleEngineError > getSpeciesDestructionTimescales (const fourdst::composition::Composition &comp, double T9, double rho) const =0
 
gridfire::EnergyDerivatives calculateEpsDerivatives (const fourdst::composition::Composition &comp, double T9, double rho) const override
 Calculate the derivatives of the energy generation rate with respect to T and rho.
 
fourdst::composition::Composition collectComposition (fourdst::composition::Composition &comp) const override
 Recursively collect composition from current engine and any sub engines if they exist.
 
- Public Member Functions inherited from gridfire::Engine
virtual ~Engine ()=default
 Virtual destructor.
 
virtual std::expected< StepDerivatives< double >, expectations::StaleEngineError > calculateRHSAndEnergy (const fourdst::composition::Composition &comp, double T9, double rho) const =0
 Calculate the right-hand side (dY/dt) and energy generation.
 
@@ -211,8 +199,56 @@ Private Attributes

Private Attributes

 

Member Function Documentation

- -

◆ calculateMolarReactionFlow()

+ +

◆ calculateEpsDerivatives()

+ +
+
+ + + + + +
+ + + + + + + + + + + + + + + + +
gridfire::EnergyDerivatives PyDynamicEngine::calculateEpsDerivatives (const fourdst::composition::Composition & comp,
double T9,
double rho ) const
+ 		+nodiscardoverridevirtual
+
+ +

Calculate the derivatives of the energy generation rate with respect to T and rho.

+
Parameters
+ + + + +
compComposition object containing current abundances.
T9Temperature in units of 10^9 K.
rhoDensity in g/cm^3.
+
+
+
Returns
EnergyDerivatives containing dEps/dT and dEps/dRho.
+

This method computes the partial derivatives of the specific nuclear energy generation rate with respect to temperature and density for the current state.

+ +

Implements gridfire::DynamicEngine.

+ +
+
+ +

◆ calculateMolarReactionFlow()

@@ -228,7 +264,7 @@ Private Attributes - const std::vector< double > & Y, + const fourdst::composition::Composition & comp, @@ -243,15 +279,30 @@ Private Attributes -override +overridevirtual
+

Calculate the molar reaction flow for a given reaction.

+
Parameters
+ + + + + +
reactionThe reaction for which to calculate the flow.
compComposition object containing current abundances.
T9Temperature in units of 10^9 K.
rhoDensity in g/cm^3.
+
+
+
Returns
Molar flow rate for the reaction (e.g., mol/g/s).
+

This method computes the net rate at which the given reaction proceeds under the current state.

+ +

Implements gridfire::DynamicEngine.

+
- -

◆ calculateRHSAndEnergy()

+ +

◆ calculateRHSAndEnergy()

@@ -262,7 +313,7 @@ Private Attributes std::expected< gridfire::StepDerivatives< double >, gridfire::expectations::StaleEngineError > PyDynamicEngine::calculateRHSAndEnergy ( - const std::vector< double > & Y, + const fourdst::composition::Composition & comp, @@ -277,15 +328,68 @@ Private Attributes -override +overridevirtual
+

Calculate the right-hand side (dY/dt) and energy generation.

+
Parameters
+ + + + +
compComposition object containing current abundances.
T9Temperature in units of 10^9 K.
rhoDensity in g/cm^3.
+
+
+
Returns
expected<StepDerivatives<double>> containing either dY/dt and energy generation rate or a stale engine error indicating that the engine must be updated
+

This function must be implemented by derived classes to compute the time derivatives of all species and the specific nuclear energy generation rate for the current state.

+ +

Implements gridfire::Engine.

+
- -

◆ generateJacobianMatrix() [1/2]

+ +

◆ collectComposition()

+ +
+
+ + + + + +
+ + + + + + + +
fourdst::composition::Composition PyDynamicEngine::collectComposition (fourdst::composition::Composition & comp) const
+ 		+overridevirtual
+
+ +

Recursively collect composition from current engine and any sub engines if they exist.

+

If species i is defined in comp and in any sub engine or self composition then the molar abundance of species i in the returned composition will be that defined in comp. If there are species defined in sub engine compositions which are not defined in comp then their molar abundances will be based on the reported values from each sub engine.

Note
It is up to each engine to decide how to handle filling in the return composition.
+
+These methods return an unfinalized composition which must then be finalized by the caller
+
Parameters
+ + +
compInput composition to "normalize".
+
+
+
Returns
An updated composition which is a superset of comp. This may contain species which were culled, for example, by either QSE partitioning or reaction flow rate culling
+ +

Implements gridfire::DynamicEngine.

+ +
+
+ +

◆ generateJacobianMatrix() [1/3]

@@ -296,7 +400,7 @@ Private Attributes void PyDynamicEngine::generateJacobianMatrix ( - const std::vector< double > & Y_dynamic, + const fourdst::composition::Composition & comp, @@ -311,15 +415,28 @@ Private Attributes -override +overridevirtual
+

Generate the Jacobian matrix for the current state.

+
Parameters
+ + + + +
compComposition object containing current abundances.
T9Temperature in units of 10^9 K.
rhoDensity in g/cm^3.
+
+
+

This method must compute and store the Jacobian matrix (∂(dY/dt)_i/∂Y_j) for the current state. The matrix can then be accessed via getJacobianMatrixEntry().

+ +

Implements gridfire::DynamicEngine.

+
- -

◆ generateJacobianMatrix() [2/2]

+ +

◆ generateJacobianMatrix() [2/3]

@@ -330,7 +447,7 @@ Private Attributes void PyDynamicEngine::generateJacobianMatrix ( - const std::vector< double > & Y_dynamic, + const fourdst::composition::Composition & comp, @@ -350,11 +467,54 @@ Private Attributes -override +overridevirtual
+

Implements gridfire::DynamicEngine.

+ +
+
+ +

◆ generateJacobianMatrix() [3/3]

+ +
+
+ + + + + +
+ + + + + + + + + + + + + + + + + + + + + +
void PyDynamicEngine::generateJacobianMatrix (const fourdst::composition::Composition & comp,
double T9,
double rho,
const std::vector< fourdst::atomic::Species > & activeSpecies ) const
+ 		+overridevirtual
+
+ +

Implements gridfire::DynamicEngine.

+
@@ -418,8 +578,8 @@ Private Attributes
- -

◆ getJacobianMatrixEntry()

+ +

◆ getJacobianMatrixEntry()

@@ -430,21 +590,34 @@ Private Attributes double PyDynamicEngine::getJacobianMatrixEntry ( - int i, + const fourdst::atomic::Species & rowSpecies, - int j ) const + const fourdst::atomic::Species & colSpecies ) const -override +overridevirtual
+

Get an entry from the previously generated Jacobian matrix.

+
Parameters
+ + + +
rowSpeciesThe species corresponding to the row index (i)
colSpeciesThe species corresponding to the column index (j)
+
+
+
Returns
Value of the Jacobian matrix at (i, j).
+

The Jacobian must have been generated by generateJacobianMatrix() before calling this.

+ +

Implements gridfire::DynamicEngine.

+
@@ -538,8 +711,8 @@ Private Attributes
- -

◆ getSpeciesDestructionTimescales()

+ +

◆ getSpeciesDestructionTimescales()

@@ -550,7 +723,7 @@ Private Attributes std::expected< std::unordered_map< fourdst::atomic::Species, double >, gridfire::expectations::StaleEngineError > PyDynamicEngine::getSpeciesDestructionTimescales ( - const std::vector< double > & Y, + const fourdst::composition::Composition & comp, @@ -565,11 +738,13 @@ Private Attributes -override +overridevirtual
+

Implements gridfire::DynamicEngine.

+
@@ -608,8 +783,8 @@ Private Attributes - -

◆ getSpeciesTimescales()

+ +

◆ getSpeciesTimescales()

@@ -620,7 +795,7 @@ Private Attributes std::expected< std::unordered_map< fourdst::atomic::Species, double >, gridfire::expectations::StaleEngineError > PyDynamicEngine::getSpeciesTimescales ( - const std::vector< double > & Y, + const fourdst::composition::Composition & comp, @@ -635,15 +810,29 @@ Private Attributes -override +overridevirtual
+

Compute timescales for all species in the network.

+
Parameters
+ + + + +
compComposition object containing current abundances.
T9Temperature in units of 10^9 K.
rhoDensity in g/cm^3.
+
+
+
Returns
Map from Species to their characteristic timescales (s).
+

This method estimates the timescale for abundance change of each species, which can be used for timestep control, diagnostics, and reaction network culling.

+ +

Implements gridfire::DynamicEngine.

+
- -

◆ getStoichiometryMatrixEntry()

+ +

◆ getStoichiometryMatrixEntry()

@@ -654,21 +843,34 @@ Private Attributes int PyDynamicEngine::getStoichiometryMatrixEntry ( - int speciesIndex, + const fourdst::atomic::Species & species, - int reactionIndex ) const + const gridfire::reaction::Reaction & reaction ) const -override +overridevirtual
+

Get an entry from the stoichiometry matrix.

+
Parameters
+ + + +
speciesspecies to look up stoichiometry for.
reactionreaction to find
+
+
+
Returns
Stoichiometric coefficient for the species in the reaction.
+

The stoichiometry matrix must have been generated by generateStoichiometryMatrix().

+ +

Implements gridfire::DynamicEngine.

+
diff --git a/docs/html/class_py_dynamic_engine.js b/docs/html/class_py_dynamic_engine.js index eaed4396..97d97399 100644 --- a/docs/html/class_py_dynamic_engine.js +++ b/docs/html/class_py_dynamic_engine.js @@ -1,19 +1,22 @@ var class_py_dynamic_engine = [ - [ "calculateMolarReactionFlow", "class_py_dynamic_engine.html#a6224f546ba66b1257506b1fc9f47195a", null ], - [ "calculateRHSAndEnergy", "class_py_dynamic_engine.html#a5b7f0cfe327c634ec125303256de8b9a", null ], - [ "generateJacobianMatrix", "class_py_dynamic_engine.html#a5bd40c752db1badcd600797c9113121d", null ], - [ "generateJacobianMatrix", "class_py_dynamic_engine.html#aa0f1fd3f0c0185395193d1b6897d64c5", null ], + [ "calculateEpsDerivatives", "class_py_dynamic_engine.html#a09eb8874b0c687aacc84a7bc7a5e2330", null ], + [ "calculateMolarReactionFlow", "class_py_dynamic_engine.html#a1b7f2e7c92b4702efcabe7c2a1faa153", null ], + [ "calculateRHSAndEnergy", "class_py_dynamic_engine.html#a6bd76ef1df93d361bf5791270390c914", null ], + [ "collectComposition", "class_py_dynamic_engine.html#a6c5397f57fb9e115495188a1d2296147", null ], + [ "generateJacobianMatrix", "class_py_dynamic_engine.html#a2a63d0132254983a2143f31e863a5c18", null ], + [ "generateJacobianMatrix", "class_py_dynamic_engine.html#a36f2dbd2278608fe8a4ef7f08d7e4963", null ], + [ "generateJacobianMatrix", "class_py_dynamic_engine.html#aae45b9260d0ec645213541c96b48a468", null ], [ "generateStoichiometryMatrix", "class_py_dynamic_engine.html#a2066649ca11a869c054079ea12d8d0e9", null ], [ "getDepth", "class_py_dynamic_engine.html#adba68716d832b6100e08d32fbc36f13c", null ], - [ "getJacobianMatrixEntry", "class_py_dynamic_engine.html#a1c888bbc0618f1ae02d9a53e45f3c159", null ], + [ "getJacobianMatrixEntry", "class_py_dynamic_engine.html#a63bbe8f6d3849e99dd41b6d9613ff1f0", null ], [ "getNetworkReactions", "class_py_dynamic_engine.html#a1d5143640666631501cf229bc491516e", null ], [ "getNetworkSpecies", "class_py_dynamic_engine.html#afc745e7ab5da5d8b3cf916044515cd7d", null ], [ "getScreeningModel", "class_py_dynamic_engine.html#ab4cfdca5e15957c5cef75ffa6dedeee5", null ], - [ "getSpeciesDestructionTimescales", "class_py_dynamic_engine.html#a020044829e0146427ed4830e5b02c4f3", null ], + [ "getSpeciesDestructionTimescales", "class_py_dynamic_engine.html#a16c27e5af29ddf187e5ab82a6e6db57b", null ], [ "getSpeciesIndex", "class_py_dynamic_engine.html#a95d10a7b240d543a1bc6c67ddf2dc8e0", null ], - [ "getSpeciesTimescales", "class_py_dynamic_engine.html#a02a4c86c9637a3c9c9ca8ddd82ecff22", null ], - [ "getStoichiometryMatrixEntry", "class_py_dynamic_engine.html#ab48ef6db18da20024aa563a91fa16f83", null ], + [ "getSpeciesTimescales", "class_py_dynamic_engine.html#a598eb1575937d165b4b383959cf8c417", null ], + [ "getStoichiometryMatrixEntry", "class_py_dynamic_engine.html#a3dd5cf419f25e76e144af35df15a2067", null ], [ "isStale", "class_py_dynamic_engine.html#a55bf19ed7534a312a36faf74753f7b14", null ], [ "mapNetInToMolarAbundanceVector", "class_py_dynamic_engine.html#a61bb4b430fe740cfb2c24e5cc673e4ac", null ], [ "primeEngine", "class_py_dynamic_engine.html#ac22a10412be6649bf379e6d61113c878", null ], diff --git a/docs/html/class_py_dynamic_engine_view-members.html b/docs/html/class_py_dynamic_engine_view-members.html index ec4ab21c..acbb761e 100644 --- a/docs/html/class_py_dynamic_engine_view-members.html +++ b/docs/html/class_py_dynamic_engine_view-members.html @@ -29,7 +29,7 @@ -
GridFire 0.6.0 +
GridFire v0.7.0-alpha
General Purpose Nuclear Network
diff --git a/docs/html/class_py_dynamic_engine_view.html b/docs/html/class_py_dynamic_engine_view.html index 5701dfa8..c5b86609 100644 --- a/docs/html/class_py_dynamic_engine_view.html +++ b/docs/html/class_py_dynamic_engine_view.html @@ -29,7 +29,7 @@ -
GridFire 0.6.0 +
GridFire v0.7.0-alpha
General Purpose Nuclear Network
@@ -149,7 +149,7 @@ Additional Inherited Members -overrideprivatevirtual +nodiscardoverrideprivatevirtual
diff --git a/docs/html/class_py_dynamic_network_solver_strategy-members.html b/docs/html/class_py_dynamic_network_solver_strategy-members.html index abedddbf..b6562547 100644 --- a/docs/html/class_py_dynamic_network_solver_strategy-members.html +++ b/docs/html/class_py_dynamic_network_solver_strategy-members.html @@ -29,7 +29,7 @@ -
GridFire 0.6.0 +
GridFire v0.7.0-alpha
General Purpose Nuclear Network
diff --git a/docs/html/class_py_dynamic_network_solver_strategy.html b/docs/html/class_py_dynamic_network_solver_strategy.html index b2dbe394..af23df36 100644 --- a/docs/html/class_py_dynamic_network_solver_strategy.html +++ b/docs/html/class_py_dynamic_network_solver_strategy.html @@ -29,7 +29,7 @@ -
GridFire 0.6.0 +
GridFire v0.7.0-alpha
General Purpose Nuclear Network
diff --git a/docs/html/class_py_engine-members.html b/docs/html/class_py_engine-members.html index 3b8dd93a..466ca18d 100644 --- a/docs/html/class_py_engine-members.html +++ b/docs/html/class_py_engine-members.html @@ -29,7 +29,7 @@ -
GridFire 0.6.0 +
GridFire v0.7.0-alpha
General Purpose Nuclear Network
@@ -105,11 +105,10 @@ $(function(){initNavTree('class_py_engine.html',''); initResizable(true); });

This is the complete list of members for PyEngine, including all inherited members.

- - - - - + + + +
calculateRHSAndEnergy(const std::vector< double > &Y, double T9, double rho) const overridePyEngine
gridfire::Engine::calculateRHSAndEnergy(const fourdst::composition::Composition &comp, double T9, double rho) const =0gridfire::Enginepure virtual
getNetworkSpecies() const overridePyEnginevirtual
m_species_cachePyEnginemutableprivate
~Engine()=defaultgridfire::Enginevirtual
calculateRHSAndEnergy(const fourdst::composition::Composition &comp, double T9, double rho) const overridePyEnginevirtual
getNetworkSpecies() const overridePyEnginevirtual
m_species_cachePyEnginemutableprivate
~Engine()=defaultgridfire::Enginevirtual
diff --git a/docs/html/class_py_engine.html b/docs/html/class_py_engine.html index 9aec10e6..1a647add 100644 --- a/docs/html/class_py_engine.html +++ b/docs/html/class_py_engine.html @@ -29,7 +29,7 @@ -
GridFire 0.6.0 +
GridFire v0.7.0-alpha
General Purpose Nuclear Network
@@ -123,15 +123,13 @@ Public Member Functions const std::vector< fourdst::atomic::Species > & getNetworkSpecies () const override  Get the list of species in the network.
  -std::expected< gridfire::StepDerivatives< double >, gridfire::expectations::StaleEngineError > calculateRHSAndEnergy (const std::vector< double > &Y, double T9, double rho) const override -  +std::expected< gridfire::StepDerivatives< double >, gridfire::expectations::StaleEngineError > calculateRHSAndEnergy (const fourdst::composition::Composition &comp, double T9, double rho) const override + Calculate the right-hand side (dY/dt) and energy generation.
+  - Public Member Functions inherited from gridfire::Engine virtual ~Engine ()=default  Virtual destructor.
  -virtual std::expected< StepDerivatives< double >, expectations::StaleEngineError > calculateRHSAndEnergy (const fourdst::composition::Composition &comp, double T9, double rho) const =0 - Calculate the right-hand side (dY/dt) and energy generation.
-  @@ -139,8 +137,8 @@ Private Attributes

Private Attributes

 

Member Function Documentation

- -

◆ calculateRHSAndEnergy()

+ +

◆ calculateRHSAndEnergy()

@@ -151,7 +149,7 @@ Private Attributes std::expected< gridfire::StepDerivatives< double >, gridfire::expectations::StaleEngineError > PyEngine::calculateRHSAndEnergy ( - const std::vector< double > & Y, + const fourdst::composition::Composition & comp, @@ -166,11 +164,25 @@ Private Attributes -override +overridevirtual
+

Calculate the right-hand side (dY/dt) and energy generation.

+
Parameters
+ + + + +
compComposition object containing current abundances.
T9Temperature in units of 10^9 K.
rhoDensity in g/cm^3.
+
+
+
Returns
expected<StepDerivatives<double>> containing either dY/dt and energy generation rate or a stale engine error indicating that the engine must be updated
+

This function must be implemented by derived classes to compute the time derivatives of all species and the specific nuclear energy generation rate for the current state.

+ +

Implements gridfire::Engine.

+
diff --git a/docs/html/class_py_engine.js b/docs/html/class_py_engine.js index 94c9b0d5..a3759123 100644 --- a/docs/html/class_py_engine.js +++ b/docs/html/class_py_engine.js @@ -1,6 +1,6 @@ var class_py_engine = [ - [ "calculateRHSAndEnergy", "class_py_engine.html#a2f92602ecf210414b46838fc0a9ae26d", null ], + [ "calculateRHSAndEnergy", "class_py_engine.html#a7a298603e9d94ca58dc0db53e5b07add", null ], [ "getNetworkSpecies", "class_py_engine.html#a2d240423899e039c2ca688e96f8af1f2", null ], [ "m_species_cache", "class_py_engine.html#a73caaa7606e2cdfd1aa82729a78ebb73", null ] ]; \ No newline at end of file diff --git a/docs/html/class_py_engine_view-members.html b/docs/html/class_py_engine_view-members.html index b92520c3..5a312d2e 100644 --- a/docs/html/class_py_engine_view-members.html +++ b/docs/html/class_py_engine_view-members.html @@ -29,7 +29,7 @@ -
GridFire 0.6.0 +
GridFire v0.7.0-alpha
General Purpose Nuclear Network
diff --git a/docs/html/class_py_engine_view.html b/docs/html/class_py_engine_view.html index 82b8b0b0..8c3deaa8 100644 --- a/docs/html/class_py_engine_view.html +++ b/docs/html/class_py_engine_view.html @@ -29,7 +29,7 @@ -
GridFire 0.6.0 +
GridFire v0.7.0-alpha
General Purpose Nuclear Network
@@ -149,7 +149,7 @@ Additional Inherited Members -overrideprivatevirtual +nodiscardoverrideprivatevirtual
diff --git a/docs/html/class_py_network_file_parser-members.html b/docs/html/class_py_network_file_parser-members.html index 729b575c..18108b92 100644 --- a/docs/html/class_py_network_file_parser-members.html +++ b/docs/html/class_py_network_file_parser-members.html @@ -29,7 +29,7 @@ -
GridFire 0.6.0 +
GridFire v0.7.0-alpha
General Purpose Nuclear Network
diff --git a/docs/html/class_py_network_file_parser.html b/docs/html/class_py_network_file_parser.html index c8370512..d007a6eb 100644 --- a/docs/html/class_py_network_file_parser.html +++ b/docs/html/class_py_network_file_parser.html @@ -29,7 +29,7 @@ -
GridFire 0.6.0 +
GridFire v0.7.0-alpha
General Purpose Nuclear Network
diff --git a/docs/html/class_py_partition_function-members.html b/docs/html/class_py_partition_function-members.html index 01568aab..14222843 100644 --- a/docs/html/class_py_partition_function-members.html +++ b/docs/html/class_py_partition_function-members.html @@ -29,7 +29,7 @@ -
GridFire 0.6.0 +
GridFire v0.7.0-alpha
General Purpose Nuclear Network
diff --git a/docs/html/class_py_partition_function.html b/docs/html/class_py_partition_function.html index bbc6c1c7..57e0ed7f 100644 --- a/docs/html/class_py_partition_function.html +++ b/docs/html/class_py_partition_function.html @@ -29,7 +29,7 @@ -
GridFire 0.6.0 +
GridFire v0.7.0-alpha
General Purpose Nuclear Network
diff --git a/docs/html/class_py_screening-members.html b/docs/html/class_py_screening-members.html index 2f2a4a81..dd10f6ba 100644 --- a/docs/html/class_py_screening-members.html +++ b/docs/html/class_py_screening-members.html @@ -29,7 +29,7 @@ -
GridFire 0.6.0 +
GridFire v0.7.0-alpha
General Purpose Nuclear Network
diff --git a/docs/html/class_py_screening.html b/docs/html/class_py_screening.html index fa7ae1e3..f0b9a194 100644 --- a/docs/html/class_py_screening.html +++ b/docs/html/class_py_screening.html @@ -29,7 +29,7 @@ -
GridFire 0.6.0 +
GridFire v0.7.0-alpha
General Purpose Nuclear Network
diff --git a/docs/html/class_py_solver_context_base-members.html b/docs/html/class_py_solver_context_base-members.html new file mode 100644 index 00000000..af002b7a --- /dev/null +++ b/docs/html/class_py_solver_context_base-members.html @@ -0,0 +1,119 @@ + + + + + + + +GridFire: Member List + + + + + + + + + + + + + + + + + +
+
+ + + + + + +
+
GridFire v0.7.0-alpha +
+
General Purpose Nuclear Network
+
+
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+ +
+
PySolverContextBase Member List
+
+
+ +

This is the complete list of members for PySolverContextBase, including all inherited members.

+ + + +
describe() const overridePySolverContextBasevirtual
~SolverContextBase()=defaultgridfire::solver::SolverContextBasevirtual
+
+ + + + diff --git a/docs/html/class_py_solver_context_base.html b/docs/html/class_py_solver_context_base.html new file mode 100644 index 00000000..fe6f32c0 --- /dev/null +++ b/docs/html/class_py_solver_context_base.html @@ -0,0 +1,175 @@ + + + + + + + +GridFire: PySolverContextBase Class Reference + + + + + + + + + + + + + + + + + +
+
+ + + + + + +
+
GridFire v0.7.0-alpha +
+
General Purpose Nuclear Network
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+Public Member Functions | +List of all members
+
PySolverContextBase Class Referencefinal
+
+
+ +

#include <py_solver.h>

+
+Inheritance diagram for PySolverContextBase:
+
+
+ + +gridfire::solver::SolverContextBase + +
+ + + + + + + + +

+Public Member Functions

std::vector< std::tuple< std::string, std::string > > describe () const override
 Describe the context for callback functions.
 
- Public Member Functions inherited from gridfire::solver::SolverContextBase
virtual ~SolverContextBase ()=default
 
+

Member Function Documentation

+ +

◆ describe()

+ +
+
+ + + + + +
+ + + + + + + +
std::vector< std::tuple< std::string, std::string > > PySolverContextBase::describe () const
+ 		+nodiscardoverridevirtual
+
+ +

Describe the context for callback functions.

+
Returns
A vector of tuples, each containing a string for the parameters name and a string for its type.
+

This method should be overridden by derived classes to provide a description of the context that will be passed to the callback function. The intent of this method is that an end user can investigate the context that will be passed to the callback function, and use this information to craft their own callback function.

+ +

Implements gridfire::solver::SolverContextBase.

+ +
+
+
The documentation for this class was generated from the following files: +
+
+ + + + diff --git a/docs/html/class_py_solver_context_base.js b/docs/html/class_py_solver_context_base.js new file mode 100644 index 00000000..910ce6f5 --- /dev/null +++ b/docs/html/class_py_solver_context_base.js @@ -0,0 +1,4 @@ +var class_py_solver_context_base = +[ + [ "describe", "class_py_solver_context_base.html#af18f517d550c037d56c44144c07f1ee8", null ] +]; \ No newline at end of file diff --git a/docs/html/class_py_solver_context_base.png b/docs/html/class_py_solver_context_base.png new file mode 100644 index 00000000..ca6e09d5 Binary files /dev/null and b/docs/html/class_py_solver_context_base.png differ diff --git a/docs/html/class_solver_plugin_interface-members.html b/docs/html/class_solver_plugin_interface-members.html index 3c5e9c42..4f66ef0d 100644 --- a/docs/html/class_solver_plugin_interface-members.html +++ b/docs/html/class_solver_plugin_interface-members.html @@ -29,7 +29,7 @@ -
GridFire 0.6.0 +
GridFire v0.7.0-alpha
General Purpose Nuclear Network
diff --git a/docs/html/class_solver_plugin_interface.html b/docs/html/class_solver_plugin_interface.html index 90e6c33e..023469e1 100644 --- a/docs/html/class_solver_plugin_interface.html +++ b/docs/html/class_solver_plugin_interface.html @@ -29,7 +29,7 @@ -
GridFire 0.6.0 +
GridFire v0.7.0-alpha
General Purpose Nuclear Network
diff --git a/docs/html/classes.html b/docs/html/classes.html index b4a0db26..e777c917 100644 --- a/docs/html/classes.html +++ b/docs/html/classes.html @@ -29,7 +29,7 @@ -
GridFire 0.6.0 +
GridFire v0.7.0-alpha
General Purpose Nuclear Network
@@ -109,10 +109,10 @@ $(function(){initNavTree('classes.html',''); initResizable(true); });
AdaptiveEngineView (gridfire)
AndTrigger (gridfire::trigger)
Approx8Net (gridfire::approx8)
Approx8Network (gridfire::approx8)
GraphEngine::AtomicReverseRate (gridfire)
WeakReaction::AtomicWeakRate (gridfire::rates::weak)
B
-
BareScreeningModel (gridfire::screening)
BoundsErrorInfo (gridfire::rates::weak)
+
BadCollectionError (gridfire::exceptions)
BareScreeningModel (gridfire::screening)
BoundsErrorInfo (gridfire::rates::weak)
C
-
MultiscalePartitioningEngineView::CacheStats (gridfire)
Column (gridfire::utils)
ColumnBase (gridfire::utils)
CompositePartitionFunction (gridfire::partition)
GraphEngine::constants (gridfire)
WeakReaction::constants (gridfire::rates::weak)
CVODESolverStrategy (gridfire::solver)
CVODESolverStrategy::CVODEUserData (gridfire::solver)
+
MultiscalePartitioningEngineView::CacheStats (gridfire)
Column (gridfire::utils)
ColumnBase (gridfire::utils)
CompositePartitionFunction (gridfire::partition)
GraphEngine::constants (gridfire)
WeakReaction::constants (gridfire::rates::weak)
ConvergenceFailureTrigger (gridfire::trigger::solver::CVODE)
CVODESolverStrategy (gridfire::solver)
CVODESolverStrategy::CVODEUserData (gridfire::solver)
D
DefinedEngineView (gridfire)
DynamicEngine (gridfire)
@@ -127,13 +127,13 @@ $(function(){initNavTree('classes.html',''); initResizable(true); });
GraphEngine (gridfire)
GroundStatePartitionFunction (gridfire::partition)
H
-
hash< gridfire::QSECacheKey > (std)
hash< gridfire::reaction::Reaction > (std)
hash< gridfire::reaction::ReactionSet > (std)
+
hash< gridfire::QSECacheKey > (std)
hash< gridfire::rates::weak::TableAxes > (std)
hash< gridfire::reaction::Reaction > (std)
hash< gridfire::reaction::ReactionSet > (std)
HashingError (gridfire::exceptions)
I
RauscherThielemannPartitionFunction::IdentifiedIsotope (gridfire::partition)
IntermediateScreeningModel (gridfire::screening)
InterpolationError (gridfire::rates::weak)
RauscherThielemannPartitionFunction::InterpolationPoints (gridfire::partition)
RauscherThielemannPartitionFunction::IsotopeData (gridfire::partition)
IsotopeGrid (gridfire::rates::weak)
J
-
Jacobian (gridfire::approx8)
+
Jacobian (gridfire::approx8)
JacobianError (gridfire::exceptions)
L
LogicalReaclibReaction (gridfire::reaction)
LogicalTrigger (gridfire::trigger)
@@ -148,7 +148,7 @@ $(function(){initNavTree('classes.html',''); initResizable(true); });
ODE (gridfire::approx8)
OffDiagonalTrigger (gridfire::trigger::solver::CVODE)
OrTrigger (gridfire::trigger)
P
-
PartitionFunction (gridfire::partition)
GraphEngine::PrecomputedReaction (gridfire)
PrimingReport (gridfire)
PyDynamicEngine
PyDynamicEngineView
PyDynamicNetworkSolverStrategy
PyEngine
PyEngineView
PyNetworkFileParser
PyPartitionFunction
PyScreening
+
PartitionFunction (gridfire::partition)
GraphEngine::PrecomputedReaction (gridfire)
PrimingReport (gridfire)
PyDynamicEngine
PyDynamicEngineView
PyDynamicNetworkSolverStrategy
PyEngine
PyEngineView
PyNetworkFileParser
PyPartitionFunction
PyScreening
PySolverContextBase
Q
QSECacheConfig (gridfire)
QSECacheKey (gridfire)
MultiscalePartitioningEngineView::QSEGroup (gridfire)
@@ -157,13 +157,13 @@ $(function(){initNavTree('classes.html',''); initResizable(true); });
RateCoefficientSet (gridfire::reaction)
RateDataRow (gridfire::rates::weak)
RauscherThielemannPartitionDataRecord (gridfire::partition::record)
RauscherThielemannPartitionFunction (gridfire::partition)
ReaclibReaction (gridfire::reaction)
Reaction (gridfire)
Reaction (gridfire::reaction)
AdaptiveEngineView::ReactionFlow (gridfire)
ReactionRecord (gridfire::reaclib)
ReactionSet (gridfire::reaction)
ReactionSet (gridfire)
S
-
ScreeningModel (gridfire::screening)
SimpleReactionListFileParser (gridfire::io)
SimulationTimeTrigger (gridfire::trigger::solver::CVODE)
SolverContextBase (gridfire::solver)
SolverPluginInterface
StaleEngineError (gridfire::exceptions)
StaleEngineError (gridfire::expectations)
StaleEngineTrigger (gridfire::exceptions)
StaleEngineTrigger::state (gridfire::exceptions)
StepDerivatives (gridfire)
+
ScreeningModel (gridfire::screening)
SimpleReactionListFileParser (gridfire::io)
SimulationTimeTrigger (gridfire::trigger::solver::CVODE)
SolverContextBase (gridfire::solver)
SolverPluginInterface
StaleEngineError (gridfire::exceptions)
StaleEngineError (gridfire::expectations)
StaleEngineTrigger (gridfire::exceptions)
StaleJacobianError (gridfire::exceptions)
StaleEngineTrigger::state (gridfire::exceptions)
StepDerivatives (gridfire)
T
TimestepCollapseTrigger (gridfire::trigger::solver::CVODE)
CVODESolverStrategy::TimestepContext (gridfire::solver)
Trigger (gridfire::trigger)
TriggerResult (gridfire::trigger)
U
-
UnableToSetNetworkReactionsError (gridfire::exceptions)
+
UnableToSetNetworkReactionsError (gridfire::exceptions)
UninitializedJacobianError (gridfire::exceptions)
UnknownJacobianError (gridfire::exceptions)
UtilityError (gridfire::exceptions)
W
WeakRateDerivatives (gridfire::rates::weak)
WeakRateInterpolator (gridfire::rates::weak)
WeakRatePayload (gridfire::rates::weak)
WeakReaction (gridfire::rates::weak)
WeakReactionEntry (gridfire::rates::weak)
WeakReactionMap (gridfire::rates::weak)
WeakScreeningModel (gridfire::screening)
diff --git a/docs/html/classgridfire_1_1_adaptive_engine_view-members.html b/docs/html/classgridfire_1_1_adaptive_engine_view-members.html index cf81946d..0767a738 100644 --- a/docs/html/classgridfire_1_1_adaptive_engine_view-members.html +++ b/docs/html/classgridfire_1_1_adaptive_engine_view-members.html @@ -29,7 +29,7 @@ -
GridFire 0.6.0 +
GridFire v0.7.0-alpha
General Purpose Nuclear Network
@@ -110,14 +110,16 @@ $(function(){initNavTree('classgridfire_1_1_adaptive_engine_view.html',''); init calculateEpsDerivatives(const fourdst::composition::Composition &comp, double T9, double rho) const overridegridfire::AdaptiveEngineViewvirtual calculateMolarReactionFlow(const reaction::Reaction &reaction, const fourdst::composition::Composition &comp, double T9, double rho) const overridegridfire::AdaptiveEngineViewvirtual calculateRHSAndEnergy(const fourdst::composition::Composition &comp, double T9, double rho) const overridegridfire::AdaptiveEngineViewvirtual - Config typedefgridfire::AdaptiveEngineViewprivate - constructReactionIndexMap() constgridfire::AdaptiveEngineViewprivate - constructSpeciesIndexMap() constgridfire::AdaptiveEngineViewprivate - cullReactionsByFlow(const std::vector< ReactionFlow > &allFlows, const std::unordered_set< fourdst::atomic::Species > &reachableSpecies, const fourdst::composition::Composition &comp, double maxFlow) constgridfire::AdaptiveEngineViewprivate - finalizeActiveSet(const std::vector< const reaction::Reaction * > &finalReactions)gridfire::AdaptiveEngineViewprivate - findReachableSpecies(const NetIn &netIn) constgridfire::AdaptiveEngineViewprivate - generateJacobianMatrix(const fourdst::composition::Composition &comp, double T9, double rho) const overridegridfire::AdaptiveEngineViewvirtual - gridfire::DynamicEngine::generateJacobianMatrix(const fourdst::composition::Composition &comp, double T9, double rho, const SparsityPattern &sparsityPattern) constgridfire::DynamicEngineinlinevirtual + collectComposition(fourdst::composition::Composition &comp) const overridegridfire::AdaptiveEngineViewvirtual + Config typedefgridfire::AdaptiveEngineViewprivate + constructReactionIndexMap() constgridfire::AdaptiveEngineViewprivate + constructSpeciesIndexMap() constgridfire::AdaptiveEngineViewprivate + cullReactionsByFlow(const std::vector< ReactionFlow > &allFlows, const std::unordered_set< fourdst::atomic::Species > &reachableSpecies, const fourdst::composition::Composition &comp, double maxFlow) constgridfire::AdaptiveEngineViewprivate + finalizeActiveSet(const std::vector< const reaction::Reaction * > &finalReactions)gridfire::AdaptiveEngineViewprivate + findReachableSpecies(const NetIn &netIn) constgridfire::AdaptiveEngineViewprivate + generateJacobianMatrix(const fourdst::composition::Composition &comp, double T9, double rho) const overridegridfire::AdaptiveEngineViewvirtual + generateJacobianMatrix(const fourdst::composition::Composition &comp, double T9, double rho, const std::vector< fourdst::atomic::Species > &activeSpecies) const overridegridfire::AdaptiveEngineViewvirtual + generateJacobianMatrix(const fourdst::composition::Composition &comp, double T9, double rho, const SparsityPattern &sparsityPattern) const overridegridfire::AdaptiveEngineViewvirtual generateStoichiometryMatrix() overridegridfire::AdaptiveEngineViewvirtual getBaseEngine() const overridegridfire::AdaptiveEngineViewinlinevirtual getDepth() constgridfire::DynamicEngineinlinevirtual diff --git a/docs/html/classgridfire_1_1_adaptive_engine_view.html b/docs/html/classgridfire_1_1_adaptive_engine_view.html index ed80bb09..25ffc83f 100644 --- a/docs/html/classgridfire_1_1_adaptive_engine_view.html +++ b/docs/html/classgridfire_1_1_adaptive_engine_view.html @@ -29,7 +29,7 @@ -
GridFire 0.6.0 +
GridFire v0.7.0-alpha
General Purpose Nuclear Network
@@ -153,6 +153,10 @@ Public Member Functions void generateJacobianMatrix (const fourdst::composition::Composition &comp, double T9, double rho) const override  Generates the Jacobian matrix for the active species.
  +void generateJacobianMatrix (const fourdst::composition::Composition &comp, double T9, double rho, const std::vector< fourdst::atomic::Species > &activeSpecies) const override +  +void generateJacobianMatrix (const fourdst::composition::Composition &comp, double T9, double rho, const SparsityPattern &sparsityPattern) const override +  double getJacobianMatrixEntry (const fourdst::atomic::Species &rowSpecies, const fourdst::atomic::Species &colSpecies) const override  Gets an entry from the Jacobian matrix for the active species.
  @@ -193,9 +197,10 @@ Public Member Functions PrimingReport primeEngine (const NetIn &netIn) override  Prime the engine with initial conditions.
  +fourdst::composition::Composition collectComposition (fourdst::composition::Composition &comp) const override + Recursively collect composition from current engine and any sub engines if they exist.
+  - Public Member Functions inherited from gridfire::DynamicEngine -virtual void generateJacobianMatrix (const fourdst::composition::Composition &comp, double T9, double rho, const SparsityPattern &sparsityPattern) const -  virtual BuildDepthType getDepth () const  Get the depth of the network.
  @@ -423,7 +428,7 @@ Private Attributes -private +nodiscardprivate
@@ -608,6 +613,45 @@ Private Attributes

Implements gridfire::Engine.

+
+
+ +

◆ collectComposition()

+ +
+
+ + + + + +
+ + + + + + + +
fourdst::composition::Composition gridfire::AdaptiveEngineView::collectComposition (fourdst::composition::Composition & comp) const
+ 		+overridevirtual
+
+ +

Recursively collect composition from current engine and any sub engines if they exist.

+

If species i is defined in comp and in any sub engine or self composition then the molar abundance of species i in the returned composition will be that defined in comp. If there are species defined in sub engine compositions which are not defined in comp then their molar abundances will be based on the reported values from each sub engine.

Note
It is up to each engine to decide how to handle filling in the return composition.
+
+These methods return an unfinalized composition which must then be finalized by the caller
+
Parameters
+ + +
compInput composition to "normalize".
+
+
+
Returns
An updated composition which is a superset of comp. This may contain species which were culled, for example, by either QSE partitioning or reaction flow rate culling
+ +

Implements gridfire::DynamicEngine.

+
@@ -814,7 +858,7 @@ Private Attributes
-

◆ generateJacobianMatrix()

+

◆ generateJacobianMatrix() [1/3]

@@ -865,6 +909,88 @@ Private Attributes

Implements gridfire::DynamicEngine.

+
+
+ +

◆ generateJacobianMatrix() [2/3]

+ +
+
+ + + + + +
+ + + + + + + + + + + + + + + + + + + + + +
void gridfire::AdaptiveEngineView::generateJacobianMatrix (const fourdst::composition::Composition & comp,
double T9,
double rho,
const SparsityPattern & sparsityPattern ) const
+ 		+overridevirtual
+
+ +

Implements gridfire::DynamicEngine.

+ +
+
+ +

◆ generateJacobianMatrix() [3/3]

+ +
+
+ + + + + +
+ + + + + + + + + + + + + + + + + + + + + +
void gridfire::AdaptiveEngineView::generateJacobianMatrix (const fourdst::composition::Composition & comp,
double T9,
double rho,
const std::vector< fourdst::atomic::Species > & activeSpecies ) const
+ 		+overridevirtual
+
+ +

Implements gridfire::DynamicEngine.

+
diff --git a/docs/html/classgridfire_1_1_adaptive_engine_view.js b/docs/html/classgridfire_1_1_adaptive_engine_view.js index 9c4cf107..748943f6 100644 --- a/docs/html/classgridfire_1_1_adaptive_engine_view.js +++ b/docs/html/classgridfire_1_1_adaptive_engine_view.js @@ -9,12 +9,15 @@ var classgridfire_1_1_adaptive_engine_view = [ "calculateEpsDerivatives", "classgridfire_1_1_adaptive_engine_view.html#a5d1b50afd2fba6af75e976a4f9c9dcbc", null ], [ "calculateMolarReactionFlow", "classgridfire_1_1_adaptive_engine_view.html#a3c1e27b45051c4ba481a2b87513982ed", null ], [ "calculateRHSAndEnergy", "classgridfire_1_1_adaptive_engine_view.html#ac5545d546166de94514871d7ad7b8669", null ], + [ "collectComposition", "classgridfire_1_1_adaptive_engine_view.html#ab2f975b860ad4f42ed1ba45e41c8e959", null ], [ "constructReactionIndexMap", "classgridfire_1_1_adaptive_engine_view.html#a89614f4a48f60c4170a0197f45303e7c", null ], [ "constructSpeciesIndexMap", "classgridfire_1_1_adaptive_engine_view.html#a896d29325b4233e83d9298850b617a2d", null ], [ "cullReactionsByFlow", "classgridfire_1_1_adaptive_engine_view.html#a95fbfb7f2bdbf80195f1ea0aff8d62fb", null ], [ "finalizeActiveSet", "classgridfire_1_1_adaptive_engine_view.html#a7b8b3a786b973e4383e721358e61b7ed", null ], [ "findReachableSpecies", "classgridfire_1_1_adaptive_engine_view.html#a0ed21f7e7c1034fc87b40d4116c4221b", null ], [ "generateJacobianMatrix", "classgridfire_1_1_adaptive_engine_view.html#a8da7664cf483cba7f979f855a74c3559", null ], + [ "generateJacobianMatrix", "classgridfire_1_1_adaptive_engine_view.html#acba9f89a48d38b1c7f7dcb2a39c6816d", null ], + [ "generateJacobianMatrix", "classgridfire_1_1_adaptive_engine_view.html#a7b8951ebe897f1ab72149068db13dbb6", null ], [ "generateStoichiometryMatrix", "classgridfire_1_1_adaptive_engine_view.html#a231193a61ba5a31e8eb92b0d4ce69111", null ], [ "getBaseEngine", "classgridfire_1_1_adaptive_engine_view.html#aee095b30a9dce5fcb5ae2fa1d2aa192c", null ], [ "getJacobianMatrixEntry", "classgridfire_1_1_adaptive_engine_view.html#adf3b8a5734983509ca02b7a1a480119f", null ], diff --git a/docs/html/classgridfire_1_1_defined_engine_view-members.html b/docs/html/classgridfire_1_1_defined_engine_view-members.html index 5c056970..630bd44b 100644 --- a/docs/html/classgridfire_1_1_defined_engine_view-members.html +++ b/docs/html/classgridfire_1_1_defined_engine_view-members.html @@ -29,7 +29,7 @@ -
GridFire 0.6.0 +
GridFire v0.7.0-alpha
General Purpose Nuclear Network
@@ -109,11 +109,13 @@ $(function(){initNavTree('classgridfire_1_1_defined_engine_view.html',''); initR calculateMolarReactionFlow(const reaction::Reaction &reaction, const fourdst::composition::Composition &comp, double T9, double rho) const overridegridfire::DefinedEngineViewvirtual calculateRHSAndEnergy(const fourdst::composition::Composition &comp, double T9, double rho) const overridegridfire::DefinedEngineViewvirtual collect(const std::vector< std::string > &peNames)gridfire::DefinedEngineViewprivate - constructReactionIndexMap() constgridfire::DefinedEngineViewprivate - constructSpeciesIndexMap() constgridfire::DefinedEngineViewprivate - DefinedEngineView(const std::vector< std::string > &peNames, DynamicEngine &baseEngine)gridfire::DefinedEngineView - generateJacobianMatrix(const fourdst::composition::Composition &comp, const double T9, const double rho) const overridegridfire::DefinedEngineViewvirtual - gridfire::DynamicEngine::generateJacobianMatrix(const fourdst::composition::Composition &comp, double T9, double rho, const SparsityPattern &sparsityPattern) constgridfire::DynamicEngineinlinevirtual + collectComposition(fourdst::composition::Composition &comp) const overridegridfire::DefinedEngineViewvirtual + constructReactionIndexMap() constgridfire::DefinedEngineViewprivate + constructSpeciesIndexMap() constgridfire::DefinedEngineViewprivate + DefinedEngineView(const std::vector< std::string > &peNames, GraphEngine &baseEngine)gridfire::DefinedEngineView + generateJacobianMatrix(const fourdst::composition::Composition &comp, double T9, double rho) const overridegridfire::DefinedEngineViewvirtual + generateJacobianMatrix(const fourdst::composition::Composition &comp, double T9, double rho, const std::vector< fourdst::atomic::Species > &activeSpecies) const overridegridfire::DefinedEngineViewvirtual + generateJacobianMatrix(const fourdst::composition::Composition &comp, double T9, double rho, const SparsityPattern &sparsityPattern) const overridegridfire::DefinedEngineViewvirtual generateStoichiometryMatrix() overridegridfire::DefinedEngineViewvirtual getBaseEngine() const overridegridfire::DefinedEngineViewvirtual getDepth() constgridfire::DynamicEngineinlinevirtual @@ -121,31 +123,32 @@ $(function(){initNavTree('classgridfire_1_1_defined_engine_view.html',''); initR getNetworkReactions() const overridegridfire::DefinedEngineViewvirtual getNetworkSpecies() const overridegridfire::DefinedEngineViewvirtual getScreeningModel() const overridegridfire::DefinedEngineViewvirtual - getSpeciesDestructionTimescales(const fourdst::composition::Composition &comp, double T9, double rho) const overridegridfire::DefinedEngineViewvirtual + getSpeciesDestructionTimescales(const fourdst::composition::Composition &comp, double T9, double rho) const overridegridfire::DefinedEngineViewvirtual getSpeciesIndex(const fourdst::atomic::Species &species) const overridegridfire::DefinedEngineViewvirtual getSpeciesTimescales(const fourdst::composition::Composition &comp, double T9, double rho) const overridegridfire::DefinedEngineViewvirtual getStoichiometryMatrixEntry(const fourdst::atomic::Species &species, const reaction::Reaction &reaction) const overridegridfire::DefinedEngineViewvirtual isStale(const NetIn &netIn) overridegridfire::DefinedEngineViewvirtual m_activeReactionsgridfire::DefinedEngineViewprivate - m_activeSpeciesgridfire::DefinedEngineViewprivate - m_baseEnginegridfire::DefinedEngineViewprotected - m_isStalegridfire::DefinedEngineViewprotected - m_loggergridfire::DefinedEngineViewprivate - m_reactionIndexMapgridfire::DefinedEngineViewprivate - m_speciesIndexMapgridfire::DefinedEngineViewprivate - mapFullToView(const std::vector< double > &full) constgridfire::DefinedEngineViewprivate - mapNetInToMolarAbundanceVector(const NetIn &netIn) const overridegridfire::DefinedEngineViewvirtual - mapViewToFull(const std::vector< double > &defined) constgridfire::DefinedEngineViewprivate - mapViewToFullReactionIndex(size_t definedReactionIndex) constgridfire::DefinedEngineViewprivate - mapViewToFullSpeciesIndex(size_t definedSpeciesIndex) constgridfire::DefinedEngineViewprivate - primeEngine(const NetIn &netIn) overridegridfire::DefinedEngineViewvirtual - rebuild(const fourdst::composition::Composition &comp, BuildDepthType depth)gridfire::DynamicEngineinlinevirtual - setNetworkReactions(const reaction::ReactionSet &reactions) overridegridfire::DefinedEngineViewvirtual - setScreeningModel(screening::ScreeningType model) overridegridfire::DefinedEngineViewvirtual - update(const NetIn &netIn) overridegridfire::DefinedEngineViewvirtual - validateNetworkState() constgridfire::DefinedEngineViewprivate - ~Engine()=defaultgridfire::Enginevirtual - ~EngineView()=defaultgridfire::EngineView< DynamicEngine >virtual + m_activeSpeciesgridfire::DefinedEngineViewprivate + m_activeSpeciesVectorCachegridfire::DefinedEngineViewmutableprivate + m_baseEnginegridfire::DefinedEngineViewprotected + m_isStalegridfire::DefinedEngineViewprotected + m_loggergridfire::DefinedEngineViewprivate + m_reactionIndexMapgridfire::DefinedEngineViewprivate + m_speciesIndexMapgridfire::DefinedEngineViewprivate + mapFullToView(const std::vector< double > &full) constgridfire::DefinedEngineViewprivate + mapNetInToMolarAbundanceVector(const NetIn &netIn) const overridegridfire::DefinedEngineViewvirtual + mapViewToFull(const std::vector< double > &defined) constgridfire::DefinedEngineViewprivate + mapViewToFullReactionIndex(size_t definedReactionIndex) constgridfire::DefinedEngineViewprivate + mapViewToFullSpeciesIndex(size_t definedSpeciesIndex) constgridfire::DefinedEngineViewprivate + primeEngine(const NetIn &netIn) overridegridfire::DefinedEngineViewvirtual + rebuild(const fourdst::composition::Composition &comp, BuildDepthType depth)gridfire::DynamicEngineinlinevirtual + setNetworkReactions(const reaction::ReactionSet &reactions) overridegridfire::DefinedEngineViewvirtual + setScreeningModel(screening::ScreeningType model) overridegridfire::DefinedEngineViewvirtual + update(const NetIn &netIn) overridegridfire::DefinedEngineViewvirtual + validateNetworkState() constgridfire::DefinedEngineViewprivate + ~Engine()=defaultgridfire::Enginevirtual + ~EngineView()=defaultgridfire::EngineView< DynamicEngine >virtual
diff --git a/docs/html/classgridfire_1_1_defined_engine_view.html b/docs/html/classgridfire_1_1_defined_engine_view.html index c5a0eac7..b09842d6 100644 --- a/docs/html/classgridfire_1_1_defined_engine_view.html +++ b/docs/html/classgridfire_1_1_defined_engine_view.html @@ -29,7 +29,7 @@ -
GridFire 0.6.0 +
GridFire v0.7.0-alpha
General Purpose Nuclear Network
@@ -126,10 +126,10 @@ Inheritance diagram for gridfire::DefinedEngineView:
- - + + - + @@ -140,9 +140,15 @@ Public Member Functions - - - + + + + + + + + + @@ -163,8 +169,8 @@ Public Member Functions - - + + @@ -185,9 +191,10 @@ Public Member Functions + + + - - @@ -207,8 +214,8 @@ Public Member Functions Protected Attributes - - + +

Public Member Functions

 DefinedEngineView (const std::vector< std::string > &peNames, DynamicEngine &baseEngine)
 
 DefinedEngineView (const std::vector< std::string > &peNames, GraphEngine &baseEngine)
 
const DynamicEngine & getBaseEngine () const override
 Access the underlying engine instance.
 Get the base engine associated with this defined engine view.
 
const std::vector< fourdst::atomic::Species > & getNetworkSpecies () const override
 Gets the list of active species in the network defined by the file.
EnergyDerivatives calculateEpsDerivatives (const fourdst::composition::Composition &comp, double T9, double rho) const override
 Calculate the derivatives of the energy generation rate with respect to T and rho.
 
void generateJacobianMatrix (const fourdst::composition::Composition &comp, const double T9, const double rho) const override
 Generates the Jacobian matrix for the active species.
 
void generateJacobianMatrix (const fourdst::composition::Composition &comp, double T9, double rho) const override
 Generates the Jacobian matrix for the active species.
 
void generateJacobianMatrix (const fourdst::composition::Composition &comp, double T9, double rho, const std::vector< fourdst::atomic::Species > &activeSpecies) const override
 Generates the Jacobian matrix for the active species.
 
void generateJacobianMatrix (const fourdst::composition::Composition &comp, double T9, double rho, const SparsityPattern &sparsityPattern) const override
 Generates the Jacobian matrix for a given sparsity pattern.
 
double getJacobianMatrixEntry (const fourdst::atomic::Species &rowSpecies, const fourdst::atomic::Species &colSpecies) const override
 Gets an entry from the Jacobian matrix for the active species.
 
std::expected< std::unordered_map< fourdst::atomic::Species, double >, expectations::StaleEngineError > getSpeciesTimescales (const fourdst::composition::Composition &comp, double T9, double rho) const override
 Computes timescales for all active species in the network.
 
std::expected< std::unordered_map< fourdst::atomic::Species, double >, expectations::StaleEngineError > getSpeciesDestructionTimescales (const fourdst::composition::Composition &comp, double T9, double rho) const override
 
std::expected< std::unordered_map< fourdst::atomic::Species, double >, expectations::StaleEngineError > getSpeciesDestructionTimescales (const fourdst::composition::Composition &comp, double T9, double rho) const override
 
fourdst::composition::Composition update (const NetIn &netIn) override
 Updates the engine view if it is marked as stale.
 
PrimingReport primeEngine (const NetIn &netIn) override
 Prime the engine with initial conditions.
 
fourdst::composition::Composition collectComposition (fourdst::composition::Composition &comp) const override
 Recursively collect composition from current engine and any sub engines if they exist.
 
- Public Member Functions inherited from gridfire::DynamicEngine
virtual void generateJacobianMatrix (const fourdst::composition::Composition &comp, double T9, double rho, const SparsityPattern &sparsityPattern) const
 
virtual BuildDepthType getDepth () const
 Get the depth of the network.
 
bool m_isStale = true
 
DynamicEngine & m_baseEngine
 
GraphEngine & m_baseEngine
 
@@ -240,9 +247,12 @@ Private Attributes - - - + + + + + + @@ -253,8 +263,8 @@ Private Attributes

Private Member Functions

quill::Logger * m_logger = fourdst::logging::LogManager::getInstance().getLogger("log")
 Active species in the defined engine.
 
std::vector< fourdst::atomic::Species > m_activeSpecies
 Active reactions in the defined engine.
 
std::set< fourdst::atomic::Species > m_activeSpecies
 Cache for the active species vector to avoid dangling references.
 
std::optional< std::vector< fourdst::atomic::Species > > m_activeSpeciesVectorCache = std::nullopt
 Active reactions in the defined engine.
 
reaction::ReactionSet m_activeReactions
 Maps indices of active species to indices in the full network.
 
 

Constructor & Destructor Documentation

- -

◆ DefinedEngineView()

+ +

◆ DefinedEngineView()

@@ -267,7 +277,7 @@ Private Attributes - DynamicEngine & baseEngine ) + GraphEngine & baseEngine )
@@ -458,6 +468,45 @@ Private Attributes
+
+
+ +

◆ collectComposition()

+ +
+
+ + + + + +
+ + + + + + + +
fourdst::composition::Composition gridfire::DefinedEngineView::collectComposition (fourdst::composition::Composition & comp) const
+ 		+overridevirtual
+
+ +

Recursively collect composition from current engine and any sub engines if they exist.

+

If species i is defined in comp and in any sub engine or self composition then the molar abundance of species i in the returned composition will be that defined in comp. If there are species defined in sub engine compositions which are not defined in comp then their molar abundances will be based on the reported values from each sub engine.

Note
It is up to each engine to decide how to handle filling in the return composition.
+
+These methods return an unfinalized composition which must then be finalized by the caller
+
Parameters
+ + +
compInput composition to "normalize".
+
+
+
Returns
An updated composition which is a superset of comp. This may contain species which were culled, for example, by either QSE partitioning or reaction flow rate culling
+ +

Implements gridfire::DynamicEngine.

+
@@ -530,8 +579,8 @@ Private Attributes
- -

◆ generateJacobianMatrix()

+ +

◆ generateJacobianMatrix() [1/3]

@@ -547,12 +596,12 @@ Private Attributes - const double T9, + double T9, - const double rho ) const + double rho ) const @@ -580,6 +629,122 @@ Private Attributes

Implements gridfire::DynamicEngine.

+
+
+ +

◆ generateJacobianMatrix() [2/3]

+ +
+
+ + + + + +
+ + + + + + + + + + + + + + + + + + + + + +
void gridfire::DefinedEngineView::generateJacobianMatrix (const fourdst::composition::Composition & comp,
double T9,
double rho,
const SparsityPattern & sparsityPattern ) const
+ 		+overridevirtual
+
+ +

Generates the Jacobian matrix for a given sparsity pattern.

+
Parameters
+ + + + + +
compA Composition object containing the current composition of the system
T9The temperature in units of 10^9 K.
rhoThe density in g/cm^3.
sparsityPatternThe sparsity pattern to use for the Jacobian matrix.
+
+
+
Exceptions
+ + +
std::runtime_errorIf the view is stale.
+
+
+ +

Implements gridfire::DynamicEngine.

+ +
+
+ +

◆ generateJacobianMatrix() [3/3]

+ +
+
+ + + + + +
+ + + + + + + + + + + + + + + + + + + + + +
void gridfire::DefinedEngineView::generateJacobianMatrix (const fourdst::composition::Composition & comp,
double T9,
double rho,
const std::vector< fourdst::atomic::Species > & activeSpecies ) const
+ 		+overridevirtual
+
+ +

Generates the Jacobian matrix for the active species.

+
Parameters
+ + + + + +
compA Composition object containing the current composition of the system
T9The temperature in units of 10^9 K.
rhoThe density in g/cm^3.
activeSpeciesThe vector of active species to include in the Jacobian.
+
+
+
Exceptions
+ + +
std::runtime_errorIf the view is stale.
+
+
+ +

Implements gridfire::DynamicEngine.

+
@@ -640,12 +805,9 @@ Private Attributes
-

Access the underlying engine instance.

-
Returns
Const reference to the underlying engine.
-

This method must be implemented by derived classes to provide access to the base engine. The returned reference should remain valid for the lifetime of the EngineView.

-

Example:

const DynamicEngine& engine = myView.getBaseEngine();
-
gridfire::DynamicEngine
Abstract class for engines supporting Jacobian and stoichiometry operations.
Definition engine_abstract.h:142
-
+

Get the base engine associated with this defined engine view.

+
Returns
A const reference to the base DynamicEngine.
+

Implements gridfire::EngineView< DynamicEngine >.

@@ -794,8 +956,8 @@ Private Attributes
- -

◆ getSpeciesDestructionTimescales()

+ +

◆ getSpeciesDestructionTimescales()

@@ -804,7 +966,7 @@ Private Attributes - + @@ -1365,8 +1527,8 @@ Private Attributes - -

◆ m_activeSpecies

+ +

◆ m_activeSpecies

@@ -1375,7 +1537,7 @@ Private Attributes
@@ -1385,12 +1547,12 @@ Private Attributes
std::expected< std::unordered_map< fourdst::atomic::Species, double >, expectations::StaleEngineError > gridfire::DefinedEngineView::getSpeciesDestructionTimescales std::expected< std::unordered_map< Species, double >, expectations::StaleEngineError > gridfire::DefinedEngineView::getSpeciesDestructionTimescales ( const fourdst::composition::Composition & comp,
- +
std::vector<fourdst::atomic::Species> gridfire::DefinedEngineView::m_activeSpeciesstd::set<fourdst::atomic::Species> gridfire::DefinedEngineView::m_activeSpecies
-

Active reactions in the defined engine.

+

Cache for the active species vector to avoid dangling references.

- -

◆ m_baseEngine

+ +

◆ m_activeSpeciesVectorCache

@@ -1399,7 +1561,31 @@ Private Attributes - + + +
DynamicEngine& gridfire::DefinedEngineView::m_baseEnginestd::optional<std::vector<fourdst::atomic::Species> > gridfire::DefinedEngineView::m_activeSpeciesVectorCache = std::nullopt
+ + +mutableprivate + + +
+ +

Active reactions in the defined engine.

+ +
+
+ +

◆ m_baseEngine

+ +
+
+ + + diff --git a/docs/html/classgridfire_1_1_defined_engine_view.js b/docs/html/classgridfire_1_1_defined_engine_view.js index eaf86bf8..8fdfb6b8 100644 --- a/docs/html/classgridfire_1_1_defined_engine_view.js +++ b/docs/html/classgridfire_1_1_defined_engine_view.js @@ -1,20 +1,23 @@ var classgridfire_1_1_defined_engine_view = [ - [ "DefinedEngineView", "classgridfire_1_1_defined_engine_view.html#a9b319b4a1bd5a08381ebb183daf72c92", null ], + [ "DefinedEngineView", "classgridfire_1_1_defined_engine_view.html#a365d3bf2da974c937267bddb07cf2bef", null ], [ "calculateEpsDerivatives", "classgridfire_1_1_defined_engine_view.html#a06aca977aafb4784fd167acb8c02dda2", null ], [ "calculateMolarReactionFlow", "classgridfire_1_1_defined_engine_view.html#a74298377d0432ae3d577be0e9e6052b3", null ], [ "calculateRHSAndEnergy", "classgridfire_1_1_defined_engine_view.html#af273b29d7700cdc34da6e2712fffc5c2", null ], [ "collect", "classgridfire_1_1_defined_engine_view.html#adbc64284b5f5a3256867be46fa87c69e", null ], + [ "collectComposition", "classgridfire_1_1_defined_engine_view.html#aefd36cae5c263cba12a0c177e70b409a", null ], [ "constructReactionIndexMap", "classgridfire_1_1_defined_engine_view.html#ab2514984afaaf8590c28ab71943fbe68", null ], [ "constructSpeciesIndexMap", "classgridfire_1_1_defined_engine_view.html#a9ea4812bc697fe43f8aded14f8aa0985", null ], - [ "generateJacobianMatrix", "classgridfire_1_1_defined_engine_view.html#ab80eadd713a40e9263e5231737e956d0", null ], + [ "generateJacobianMatrix", "classgridfire_1_1_defined_engine_view.html#a0b38e584912f9df9cee5a77752e85492", null ], + [ "generateJacobianMatrix", "classgridfire_1_1_defined_engine_view.html#a2c502d447134260086558ce83336cda9", null ], + [ "generateJacobianMatrix", "classgridfire_1_1_defined_engine_view.html#a09613471ccc5169ce8525c2bef88a59b", null ], [ "generateStoichiometryMatrix", "classgridfire_1_1_defined_engine_view.html#ad07221be49ae1b5133c5b987dafac3b6", null ], [ "getBaseEngine", "classgridfire_1_1_defined_engine_view.html#a69b9a5812ad8bda13f956acd0da24484", null ], [ "getJacobianMatrixEntry", "classgridfire_1_1_defined_engine_view.html#aa49532266ff959ac66f501336f102ce8", null ], [ "getNetworkReactions", "classgridfire_1_1_defined_engine_view.html#a5f9db5a9287aa03b2fa4d516e9a576b6", null ], [ "getNetworkSpecies", "classgridfire_1_1_defined_engine_view.html#a1a55f9748c45af6f13e16a6b6ceaa211", null ], [ "getScreeningModel", "classgridfire_1_1_defined_engine_view.html#a3c657b82a0117118a4bb0ce7f624ae0c", null ], - [ "getSpeciesDestructionTimescales", "classgridfire_1_1_defined_engine_view.html#a7bcf169ba1e12e3356d4bcc27c3fc554", null ], + [ "getSpeciesDestructionTimescales", "classgridfire_1_1_defined_engine_view.html#ad51ef1984f92856b6d4c522e56e8d6a6", null ], [ "getSpeciesIndex", "classgridfire_1_1_defined_engine_view.html#af3b355ffcda6a8f2841184cc56e3761a", null ], [ "getSpeciesTimescales", "classgridfire_1_1_defined_engine_view.html#a18f46d92ea7e04068ad9e7af4ed605a8", null ], [ "getStoichiometryMatrixEntry", "classgridfire_1_1_defined_engine_view.html#af1843cfd2a95bfa46ab40d4c4de11ef9", null ], @@ -30,8 +33,9 @@ var classgridfire_1_1_defined_engine_view = [ "update", "classgridfire_1_1_defined_engine_view.html#ae5762f395caea5381ec177507816b5ae", null ], [ "validateNetworkState", "classgridfire_1_1_defined_engine_view.html#a56bd041c2fc7fe4f1371c38c8c0443e0", null ], [ "m_activeReactions", "classgridfire_1_1_defined_engine_view.html#a824fe65ae22fa856051f2652764a0bb6", null ], - [ "m_activeSpecies", "classgridfire_1_1_defined_engine_view.html#a64e9c79a36d529e1b296fe5786e57aae", null ], - [ "m_baseEngine", "classgridfire_1_1_defined_engine_view.html#a6e3243a8a8bcdce3282a8f82c5f98195", null ], + [ "m_activeSpecies", "classgridfire_1_1_defined_engine_view.html#af9a80586c9428eeb3e3d1dc7f67267d6", null ], + [ "m_activeSpeciesVectorCache", "classgridfire_1_1_defined_engine_view.html#a380e7a98cc782c9becd191d8de17c31d", null ], + [ "m_baseEngine", "classgridfire_1_1_defined_engine_view.html#a754ef6a1fb9259d533f1eefa823d5758", null ], [ "m_isStale", "classgridfire_1_1_defined_engine_view.html#a217d541f3fa777b1552f652fbb520382", null ], [ "m_logger", "classgridfire_1_1_defined_engine_view.html#a4f4aa847ee80ad430de9b1cfdda6b4e3", null ], [ "m_reactionIndexMap", "classgridfire_1_1_defined_engine_view.html#affda6d60651c53ee02532806104671bd", null ], diff --git a/docs/html/classgridfire_1_1_dynamic_engine-members.html b/docs/html/classgridfire_1_1_dynamic_engine-members.html index 362cd966..f54e4826 100644 --- a/docs/html/classgridfire_1_1_dynamic_engine-members.html +++ b/docs/html/classgridfire_1_1_dynamic_engine-members.html @@ -29,7 +29,7 @@ @@ -108,8 +108,10 @@ $(function(){initNavTree('classgridfire_1_1_dynamic_engine.html',''); initResiza - - + + + + diff --git a/docs/html/classgridfire_1_1_dynamic_engine.html b/docs/html/classgridfire_1_1_dynamic_engine.html index 07241f31..4b4b24f6 100644 --- a/docs/html/classgridfire_1_1_dynamic_engine.html +++ b/docs/html/classgridfire_1_1_dynamic_engine.html @@ -29,7 +29,7 @@ @@ -132,8 +132,10 @@ Public Member Functions - - + + + + @@ -185,6 +187,9 @@ Public Member Functions + + + @@ -251,7 +256,7 @@ Public Member Functions
Returns
EnergyDerivatives containing dEps/dT and dEps/dRho.

This method computes the partial derivatives of the specific nuclear energy generation rate with respect to temperature and density for the current state.

-

Implemented in gridfire::AdaptiveEngineView, gridfire::DefinedEngineView, gridfire::GraphEngine, and gridfire::MultiscalePartitioningEngineView.

+

Implemented in gridfire::AdaptiveEngineView, gridfire::DefinedEngineView, gridfire::GraphEngine, gridfire::MultiscalePartitioningEngineView, and PyDynamicEngine.

@@ -305,12 +310,51 @@ Public Member Functions
Returns
Molar flow rate for the reaction (e.g., mol/g/s).

This method computes the net rate at which the given reaction proceeds under the current state.

-

Implemented in gridfire::AdaptiveEngineView, gridfire::DefinedEngineView, gridfire::GraphEngine, and gridfire::MultiscalePartitioningEngineView.

+

Implemented in gridfire::AdaptiveEngineView, gridfire::DefinedEngineView, gridfire::GraphEngine, gridfire::MultiscalePartitioningEngineView, and PyDynamicEngine.

+ + + + +

◆ collectComposition()

+ +
+
+
+ + +
GraphEngine& gridfire::DefinedEngineView::m_baseEngine
-
GridFire 0.6.0 +
GridFire v0.7.0-alpha
General Purpose Nuclear Network
calculateEpsDerivatives(const fourdst::composition::Composition &comp, double T9, double rho) const =0gridfire::DynamicEnginepure virtual
calculateMolarReactionFlow(const reaction::Reaction &reaction, const fourdst::composition::Composition &comp, double T9, double rho) const =0gridfire::DynamicEnginepure virtual
calculateRHSAndEnergy(const fourdst::composition::Composition &comp, double T9, double rho) const =0gridfire::Enginepure virtual
generateJacobianMatrix(const fourdst::composition::Composition &comp, double T9, double rho) const =0gridfire::DynamicEnginepure virtual
generateJacobianMatrix(const fourdst::composition::Composition &comp, double T9, double rho, const SparsityPattern &sparsityPattern) constgridfire::DynamicEngineinlinevirtual
collectComposition(fourdst::composition::Composition &comp) const =0gridfire::DynamicEnginepure virtual
generateJacobianMatrix(const fourdst::composition::Composition &comp, double T9, double rho) const =0gridfire::DynamicEnginepure virtual
generateJacobianMatrix(const fourdst::composition::Composition &comp, double T9, double rho, const std::vector< fourdst::atomic::Species > &activeSpecies) const =0gridfire::DynamicEnginepure virtual
generateJacobianMatrix(const fourdst::composition::Composition &comp, double T9, double rho, const SparsityPattern &sparsityPattern) const =0gridfire::DynamicEnginepure virtual
generateStoichiometryMatrix()=0gridfire::DynamicEnginepure virtual
getDepth() constgridfire::DynamicEngineinlinevirtual
getJacobianMatrixEntry(const fourdst::atomic::Species &rowSpecies, const fourdst::atomic::Species &colSpecies) const =0gridfire::DynamicEnginepure virtual
-
GridFire 0.6.0 +
GridFire v0.7.0-alpha
General Purpose Nuclear Network
virtual void generateJacobianMatrix (const fourdst::composition::Composition &comp, double T9, double rho) const =0
 Generate the Jacobian matrix for the current state.
 
virtual void generateJacobianMatrix (const fourdst::composition::Composition &comp, double T9, double rho, const SparsityPattern &sparsityPattern) const
 
virtual void generateJacobianMatrix (const fourdst::composition::Composition &comp, double T9, double rho, const std::vector< fourdst::atomic::Species > &activeSpecies) const =0
 
virtual void generateJacobianMatrix (const fourdst::composition::Composition &comp, double T9, double rho, const SparsityPattern &sparsityPattern) const =0
 
virtual double getJacobianMatrixEntry (const fourdst::atomic::Species &rowSpecies, const fourdst::atomic::Species &colSpecies) const =0
 Get an entry from the previously generated Jacobian matrix.
 
virtual void rebuild (const fourdst::composition::Composition &comp, BuildDepthType depth)
 Rebuild the network with a specified depth.
 
virtual fourdst::composition::Composition collectComposition (fourdst::composition::Composition &comp) const =0
 Recursively collect composition from current engine and any sub engines if they exist.
 
- Public Member Functions inherited from gridfire::Engine
virtual ~Engine ()=default
 Virtual destructor.
+ + + + +
+ + + + + + + +
virtual fourdst::composition::Composition gridfire::DynamicEngine::collectComposition (fourdst::composition::Composition & comp) const
+ 		+pure virtual
+
+ +

Recursively collect composition from current engine and any sub engines if they exist.

+

If species i is defined in comp and in any sub engine or self composition then the molar abundance of species i in the returned composition will be that defined in comp. If there are species defined in sub engine compositions which are not defined in comp then their molar abundances will be based on the reported values from each sub engine.

Note
It is up to each engine to decide how to handle filling in the return composition.
+
+These methods return an unfinalized composition which must then be finalized by the caller
+
Parameters
+ + +
compInput composition to "normalize".
+
+
+
Returns
An updated composition which is a superset of comp. This may contain species which were culled, for example, by either QSE partitioning or reaction flow rate culling
+ +

Implemented in gridfire::AdaptiveEngineView, gridfire::DefinedEngineView, gridfire::GraphEngine, gridfire::MultiscalePartitioningEngineView, and PyDynamicEngine.

-

◆ generateJacobianMatrix() [1/2]

+

◆ generateJacobianMatrix() [1/3]

@@ -352,12 +396,12 @@ Public Member Functions

This method must compute and store the Jacobian matrix (∂(dY/dt)_i/∂Y_j) for the current state. The matrix can then be accessed via getJacobianMatrixEntry().

-

Implemented in gridfire::AdaptiveEngineView, gridfire::DefinedEngineView, gridfire::GraphEngine, and gridfire::MultiscalePartitioningEngineView.

+

Implemented in gridfire::AdaptiveEngineView, gridfire::DefinedEngineView, gridfire::GraphEngine, gridfire::MultiscalePartitioningEngineView, and PyDynamicEngine.

- -

◆ generateJacobianMatrix() [2/2]

+ +

◆ generateJacobianMatrix() [2/3]

@@ -388,12 +432,53 @@ Public Member Functions -inlinevirtual +pure virtual
-

Reimplemented in gridfire::GraphEngine.

+

Implemented in gridfire::AdaptiveEngineView, gridfire::DefinedEngineView, gridfire::GraphEngine, gridfire::MultiscalePartitioningEngineView, and PyDynamicEngine.

+ +
+
+ +

◆ generateJacobianMatrix() [3/3]

+ +
+
+ + + + + +
+ + + + + + + + + + + + + + + + + + + + + +
virtual void gridfire::DynamicEngine::generateJacobianMatrix (const fourdst::composition::Composition & comp,
double T9,
double rho,
const std::vector< fourdst::atomic::Species > & activeSpecies ) const
+ 		+pure virtual
+
+ +

Implemented in gridfire::AdaptiveEngineView, gridfire::DefinedEngineView, gridfire::GraphEngine, gridfire::MultiscalePartitioningEngineView, and PyDynamicEngine.

@@ -496,7 +581,7 @@ Public Member Functions
Returns
Value of the Jacobian matrix at (i, j).

The Jacobian must have been generated by generateJacobianMatrix() before calling this.

-

Implemented in gridfire::AdaptiveEngineView, gridfire::DefinedEngineView, gridfire::GraphEngine, and gridfire::MultiscalePartitioningEngineView.

+

Implemented in gridfire::AdaptiveEngineView, gridfire::DefinedEngineView, gridfire::GraphEngine, gridfire::MultiscalePartitioningEngineView, and PyDynamicEngine.

@@ -595,7 +680,7 @@ Public Member Functions
-

Implemented in gridfire::AdaptiveEngineView, gridfire::DefinedEngineView, gridfire::GraphEngine, and gridfire::MultiscalePartitioningEngineView.

+

Implemented in gridfire::AdaptiveEngineView, gridfire::DefinedEngineView, gridfire::GraphEngine, gridfire::MultiscalePartitioningEngineView, and PyDynamicEngine.

@@ -679,7 +764,7 @@ Public Member Functions
Returns
Map from Species to their characteristic timescales (s).

This method estimates the timescale for abundance change of each species, which can be used for timestep control, diagnostics, and reaction network culling.

-

Implemented in gridfire::AdaptiveEngineView, gridfire::DefinedEngineView, gridfire::GraphEngine, and gridfire::MultiscalePartitioningEngineView.

+

Implemented in gridfire::AdaptiveEngineView, gridfire::DefinedEngineView, gridfire::GraphEngine, gridfire::MultiscalePartitioningEngineView, and PyDynamicEngine.

@@ -721,7 +806,7 @@ Public Member Functions
Returns
Stoichiometric coefficient for the species in the reaction.

The stoichiometry matrix must have been generated by generateStoichiometryMatrix().

-

Implemented in gridfire::AdaptiveEngineView, gridfire::DefinedEngineView, gridfire::GraphEngine, and gridfire::MultiscalePartitioningEngineView.

+

Implemented in gridfire::AdaptiveEngineView, gridfire::DefinedEngineView, gridfire::GraphEngine, gridfire::MultiscalePartitioningEngineView, and PyDynamicEngine.

@@ -863,7 +948,7 @@ Public Member Functions

This method is intended to allow dynamic adjustment of the network's depth, which may involve adding or removing species and reactions based on the specified depth. However, not all engines support this operation.

-

Reimplemented in gridfire::GraphEngine, and PyDynamicEngine.

+

Reimplemented in gridfire::GraphEngine, and PyDynamicEngine.

diff --git a/docs/html/classgridfire_1_1_dynamic_engine.js b/docs/html/classgridfire_1_1_dynamic_engine.js index da030acb..0d3683cc 100644 --- a/docs/html/classgridfire_1_1_dynamic_engine.js +++ b/docs/html/classgridfire_1_1_dynamic_engine.js @@ -2,8 +2,10 @@ var classgridfire_1_1_dynamic_engine = [ [ "calculateEpsDerivatives", "classgridfire_1_1_dynamic_engine.html#a264bd5a8891c8c5f0dff32867effe547", null ], [ "calculateMolarReactionFlow", "classgridfire_1_1_dynamic_engine.html#a39cf5b738eea0a275bf8c0eb5789fab3", null ], + [ "collectComposition", "classgridfire_1_1_dynamic_engine.html#a827c7e6fa7f2c5baf13a564fb4911388", null ], [ "generateJacobianMatrix", "classgridfire_1_1_dynamic_engine.html#a21d15531309456ee83f7675251e7a1bf", null ], - [ "generateJacobianMatrix", "classgridfire_1_1_dynamic_engine.html#a11d602a708af4629f51873b17f7b8dbd", null ], + [ "generateJacobianMatrix", "classgridfire_1_1_dynamic_engine.html#a495bdb1e0c6f9911deb844b22c33644e", null ], + [ "generateJacobianMatrix", "classgridfire_1_1_dynamic_engine.html#a8538fd9285a192f879a45e3dd3f26362", null ], [ "generateStoichiometryMatrix", "classgridfire_1_1_dynamic_engine.html#aeae6d84ef74d88fd2cdf07b82e98a16f", null ], [ "getDepth", "classgridfire_1_1_dynamic_engine.html#a04317b66ef14d519264bc30ee69f5bf9", null ], [ "getJacobianMatrixEntry", "classgridfire_1_1_dynamic_engine.html#a88dbf350dc0ea3e2b64d825f489e0d60", null ], diff --git a/docs/html/classgridfire_1_1_engine-members.html b/docs/html/classgridfire_1_1_engine-members.html index 8c7d9357..79502e3d 100644 --- a/docs/html/classgridfire_1_1_engine-members.html +++ b/docs/html/classgridfire_1_1_engine-members.html @@ -29,7 +29,7 @@ -
GridFire 0.6.0 +
GridFire v0.7.0-alpha
General Purpose Nuclear Network
diff --git a/docs/html/classgridfire_1_1_engine.html b/docs/html/classgridfire_1_1_engine.html index 2c70f879..ad433318 100644 --- a/docs/html/classgridfire_1_1_engine.html +++ b/docs/html/classgridfire_1_1_engine.html @@ -29,7 +29,7 @@ -
GridFire 0.6.0 +
GridFire v0.7.0-alpha
General Purpose Nuclear Network
@@ -218,10 +218,10 @@ Public Member Functions -
Returns
StepDerivatives<double> containing dY/dt and energy generation rate.
+
Returns
expected<StepDerivatives<double>> containing either dY/dt and energy generation rate or a stale engine error indicating that the engine must be updated

This function must be implemented by derived classes to compute the time derivatives of all species and the specific nuclear energy generation rate for the current state.

-

Implemented in gridfire::AdaptiveEngineView, gridfire::DefinedEngineView, gridfire::GraphEngine, and gridfire::MultiscalePartitioningEngineView.

+

Implemented in gridfire::AdaptiveEngineView, gridfire::DefinedEngineView, gridfire::GraphEngine, gridfire::MultiscalePartitioningEngineView, PyDynamicEngine, and PyEngine.

diff --git a/docs/html/classgridfire_1_1_engine_view-members.html b/docs/html/classgridfire_1_1_engine_view-members.html index 6703d071..5a9d0768 100644 --- a/docs/html/classgridfire_1_1_engine_view-members.html +++ b/docs/html/classgridfire_1_1_engine_view-members.html @@ -29,7 +29,7 @@ -
GridFire 0.6.0 +
GridFire v0.7.0-alpha
General Purpose Nuclear Network
diff --git a/docs/html/classgridfire_1_1_engine_view.html b/docs/html/classgridfire_1_1_engine_view.html index 7770e2db..6f9d2c54 100644 --- a/docs/html/classgridfire_1_1_engine_view.html +++ b/docs/html/classgridfire_1_1_engine_view.html @@ -29,7 +29,7 @@ -
GridFire 0.6.0 +
GridFire v0.7.0-alpha
General Purpose Nuclear Network
@@ -139,7 +139,7 @@ class gridfire::EngineView< EngineT >

Abstract base class for a "v

private:
DynamicEngine& engine_;
};
-
gridfire::DynamicEngine
Abstract class for engines supporting Jacobian and stoichiometry operations.
Definition engine_abstract.h:142
+
gridfire::DynamicEngine
Abstract class for engines supporting Jacobian and stoichiometry operations.
Definition engine_abstract.h:143
gridfire::EngineView
Abstract base class for a "view" of a reaction network engine.
Definition engine_view_abstract.h:74
gridfire::EngineView::getBaseEngine
virtual const EngineT & getBaseEngine() const =0
Access the underlying engine instance.
See also
gridfire::AdaptiveEngineView for a concrete example of dynamic culling.
diff --git a/docs/html/classgridfire_1_1_file_defined_engine_view-members.html b/docs/html/classgridfire_1_1_file_defined_engine_view-members.html index 2dd3c8b5..8dc633f2 100644 --- a/docs/html/classgridfire_1_1_file_defined_engine_view-members.html +++ b/docs/html/classgridfire_1_1_file_defined_engine_view-members.html @@ -29,7 +29,7 @@ -
GridFire 0.6.0 +
GridFire v0.7.0-alpha
General Purpose Nuclear Network
@@ -109,13 +109,15 @@ $(function(){initNavTree('classgridfire_1_1_file_defined_engine_view.html',''); calculateMolarReactionFlow(const reaction::Reaction &reaction, const fourdst::composition::Composition &comp, double T9, double rho) const overridegridfire::DefinedEngineViewvirtual calculateRHSAndEnergy(const fourdst::composition::Composition &comp, double T9, double rho) const overridegridfire::DefinedEngineViewvirtual collect(const std::vector< std::string > &peNames)gridfire::DefinedEngineViewprivate - Config typedefgridfire::FileDefinedEngineViewprivate - constructReactionIndexMap() constgridfire::DefinedEngineViewprivate - constructSpeciesIndexMap() constgridfire::DefinedEngineViewprivate - DefinedEngineView(const std::vector< std::string > &peNames, DynamicEngine &baseEngine)gridfire::DefinedEngineView - FileDefinedEngineView(DynamicEngine &baseEngine, const std::string &fileName, const io::NetworkFileParser &parser)gridfire::FileDefinedEngineViewexplicit - generateJacobianMatrix(const fourdst::composition::Composition &comp, const double T9, const double rho) const overridegridfire::DefinedEngineViewvirtual - gridfire::DynamicEngine::generateJacobianMatrix(const fourdst::composition::Composition &comp, double T9, double rho, const SparsityPattern &sparsityPattern) constgridfire::DynamicEngineinlinevirtual + collectComposition(fourdst::composition::Composition &comp) const overridegridfire::DefinedEngineViewvirtual + Config typedefgridfire::FileDefinedEngineViewprivate + constructReactionIndexMap() constgridfire::DefinedEngineViewprivate + constructSpeciesIndexMap() constgridfire::DefinedEngineViewprivate + DefinedEngineView(const std::vector< std::string > &peNames, GraphEngine &baseEngine)gridfire::DefinedEngineView + FileDefinedEngineView(GraphEngine &baseEngine, const std::string &fileName, const io::NetworkFileParser &parser)gridfire::FileDefinedEngineViewexplicit + generateJacobianMatrix(const fourdst::composition::Composition &comp, double T9, double rho) const overridegridfire::DefinedEngineViewvirtual + generateJacobianMatrix(const fourdst::composition::Composition &comp, double T9, double rho, const std::vector< fourdst::atomic::Species > &activeSpecies) const overridegridfire::DefinedEngineViewvirtual + generateJacobianMatrix(const fourdst::composition::Composition &comp, double T9, double rho, const SparsityPattern &sparsityPattern) const overridegridfire::DefinedEngineViewvirtual generateStoichiometryMatrix() overridegridfire::DefinedEngineViewvirtual getBaseEngine() const overridegridfire::DefinedEngineViewvirtual getDepth() constgridfire::DynamicEngineinlinevirtual @@ -125,35 +127,36 @@ $(function(){initNavTree('classgridfire_1_1_file_defined_engine_view.html',''); getNetworkSpecies() const overridegridfire::DefinedEngineViewvirtual getParser() constgridfire::FileDefinedEngineViewinline getScreeningModel() const overridegridfire::DefinedEngineViewvirtual - getSpeciesDestructionTimescales(const fourdst::composition::Composition &comp, double T9, double rho) const overridegridfire::DefinedEngineViewvirtual + getSpeciesDestructionTimescales(const fourdst::composition::Composition &comp, double T9, double rho) const overridegridfire::DefinedEngineViewvirtual getSpeciesIndex(const fourdst::atomic::Species &species) const overridegridfire::DefinedEngineViewvirtual getSpeciesTimescales(const fourdst::composition::Composition &comp, double T9, double rho) const overridegridfire::DefinedEngineViewvirtual getStoichiometryMatrixEntry(const fourdst::atomic::Species &species, const reaction::Reaction &reaction) const overridegridfire::DefinedEngineViewvirtual isStale(const NetIn &netIn) overridegridfire::DefinedEngineViewvirtual LogManager typedefgridfire::FileDefinedEngineViewprivate m_activeReactionsgridfire::DefinedEngineViewprivate - m_activeSpeciesgridfire::DefinedEngineViewprivate - m_baseEnginegridfire::DefinedEngineViewprotected - m_configgridfire::FileDefinedEngineViewprivate - m_fileNamegridfire::FileDefinedEngineViewprivate - m_isStalegridfire::DefinedEngineViewprotected - m_loggergridfire::FileDefinedEngineViewprivate - m_parsergridfire::FileDefinedEngineViewprivate - m_reactionIndexMapgridfire::DefinedEngineViewprivate - m_speciesIndexMapgridfire::DefinedEngineViewprivate - mapFullToView(const std::vector< double > &full) constgridfire::DefinedEngineViewprivate - mapNetInToMolarAbundanceVector(const NetIn &netIn) const overridegridfire::DefinedEngineViewvirtual - mapViewToFull(const std::vector< double > &defined) constgridfire::DefinedEngineViewprivate - mapViewToFullReactionIndex(size_t definedReactionIndex) constgridfire::DefinedEngineViewprivate - mapViewToFullSpeciesIndex(size_t definedSpeciesIndex) constgridfire::DefinedEngineViewprivate - primeEngine(const NetIn &netIn) overridegridfire::DefinedEngineViewvirtual - rebuild(const fourdst::composition::Composition &comp, BuildDepthType depth)gridfire::DynamicEngineinlinevirtual - setNetworkReactions(const reaction::ReactionSet &reactions) overridegridfire::DefinedEngineViewvirtual - setScreeningModel(screening::ScreeningType model) overridegridfire::DefinedEngineViewvirtual - update(const NetIn &netIn) overridegridfire::DefinedEngineViewvirtual - validateNetworkState() constgridfire::DefinedEngineViewprivate - ~Engine()=defaultgridfire::Enginevirtual - ~EngineView()=defaultgridfire::EngineView< DynamicEngine >virtual + m_activeSpeciesgridfire::DefinedEngineViewprivate + m_activeSpeciesVectorCachegridfire::DefinedEngineViewmutableprivate + m_baseEnginegridfire::DefinedEngineViewprotected + m_configgridfire::FileDefinedEngineViewprivate + m_fileNamegridfire::FileDefinedEngineViewprivate + m_isStalegridfire::DefinedEngineViewprotected + m_loggergridfire::FileDefinedEngineViewprivate + m_parsergridfire::FileDefinedEngineViewprivate + m_reactionIndexMapgridfire::DefinedEngineViewprivate + m_speciesIndexMapgridfire::DefinedEngineViewprivate + mapFullToView(const std::vector< double > &full) constgridfire::DefinedEngineViewprivate + mapNetInToMolarAbundanceVector(const NetIn &netIn) const overridegridfire::DefinedEngineViewvirtual + mapViewToFull(const std::vector< double > &defined) constgridfire::DefinedEngineViewprivate + mapViewToFullReactionIndex(size_t definedReactionIndex) constgridfire::DefinedEngineViewprivate + mapViewToFullSpeciesIndex(size_t definedSpeciesIndex) constgridfire::DefinedEngineViewprivate + primeEngine(const NetIn &netIn) overridegridfire::DefinedEngineViewvirtual + rebuild(const fourdst::composition::Composition &comp, BuildDepthType depth)gridfire::DynamicEngineinlinevirtual + setNetworkReactions(const reaction::ReactionSet &reactions) overridegridfire::DefinedEngineViewvirtual + setScreeningModel(screening::ScreeningType model) overridegridfire::DefinedEngineViewvirtual + update(const NetIn &netIn) overridegridfire::DefinedEngineViewvirtual + validateNetworkState() constgridfire::DefinedEngineViewprivate + ~Engine()=defaultgridfire::Enginevirtual + ~EngineView()=defaultgridfire::EngineView< DynamicEngine >virtual
diff --git a/docs/html/classgridfire_1_1_file_defined_engine_view.html b/docs/html/classgridfire_1_1_file_defined_engine_view.html index e36e25e2..51f8fec4 100644 --- a/docs/html/classgridfire_1_1_file_defined_engine_view.html +++ b/docs/html/classgridfire_1_1_file_defined_engine_view.html @@ -29,7 +29,7 @@ -
GridFire 0.6.0 +
GridFire v0.7.0-alpha
General Purpose Nuclear Network
@@ -124,18 +124,18 @@ Inheritance diagram for gridfire::FileDefinedEngineView:
- - - + + + - - + + - + @@ -146,9 +146,15 @@ Public Member Functions - - - + + + + + + + + + @@ -169,8 +175,8 @@ Public Member Functions - - + + @@ -191,9 +197,10 @@ Public Member Functions + + + - - @@ -233,8 +240,8 @@ Additional Inherited Members - - + +

Public Member Functions

 FileDefinedEngineView (DynamicEngine &baseEngine, const std::string &fileName, const io::NetworkFileParser &parser)
 FileDefinedEngineView Implementation ///.
 
 FileDefinedEngineView (GraphEngine &baseEngine, const std::string &fileName, const io::NetworkFileParser &parser)
 FileDefinedEngineView Implementation ///.
 
std::string getNetworkFile () const
 
const io::NetworkFileParser & getParser () const
 
- Public Member Functions inherited from gridfire::DefinedEngineView
 DefinedEngineView (const std::vector< std::string > &peNames, DynamicEngine &baseEngine)
 
 DefinedEngineView (const std::vector< std::string > &peNames, GraphEngine &baseEngine)
 
const DynamicEngine & getBaseEngine () const override
 Access the underlying engine instance.
 Get the base engine associated with this defined engine view.
 
const std::vector< fourdst::atomic::Species > & getNetworkSpecies () const override
 Gets the list of active species in the network defined by the file.
EnergyDerivatives calculateEpsDerivatives (const fourdst::composition::Composition &comp, double T9, double rho) const override
 Calculate the derivatives of the energy generation rate with respect to T and rho.
 
void generateJacobianMatrix (const fourdst::composition::Composition &comp, const double T9, const double rho) const override
 Generates the Jacobian matrix for the active species.
 
void generateJacobianMatrix (const fourdst::composition::Composition &comp, double T9, double rho) const override
 Generates the Jacobian matrix for the active species.
 
void generateJacobianMatrix (const fourdst::composition::Composition &comp, double T9, double rho, const std::vector< fourdst::atomic::Species > &activeSpecies) const override
 Generates the Jacobian matrix for the active species.
 
void generateJacobianMatrix (const fourdst::composition::Composition &comp, double T9, double rho, const SparsityPattern &sparsityPattern) const override
 Generates the Jacobian matrix for a given sparsity pattern.
 
double getJacobianMatrixEntry (const fourdst::atomic::Species &rowSpecies, const fourdst::atomic::Species &colSpecies) const override
 Gets an entry from the Jacobian matrix for the active species.
 
std::expected< std::unordered_map< fourdst::atomic::Species, double >, expectations::StaleEngineError > getSpeciesTimescales (const fourdst::composition::Composition &comp, double T9, double rho) const override
 Computes timescales for all active species in the network.
 
std::expected< std::unordered_map< fourdst::atomic::Species, double >, expectations::StaleEngineError > getSpeciesDestructionTimescales (const fourdst::composition::Composition &comp, double T9, double rho) const override
 
std::expected< std::unordered_map< fourdst::atomic::Species, double >, expectations::StaleEngineError > getSpeciesDestructionTimescales (const fourdst::composition::Composition &comp, double T9, double rho) const override
 
fourdst::composition::Composition update (const NetIn &netIn) override
 Updates the engine view if it is marked as stale.
 
PrimingReport primeEngine (const NetIn &netIn) override
 Prime the engine with initial conditions.
 
fourdst::composition::Composition collectComposition (fourdst::composition::Composition &comp) const override
 Recursively collect composition from current engine and any sub engines if they exist.
 
- Public Member Functions inherited from gridfire::DynamicEngine
virtual void generateJacobianMatrix (const fourdst::composition::Composition &comp, double T9, double rho, const SparsityPattern &sparsityPattern) const
 
virtual BuildDepthType getDepth () const
 Get the depth of the network.
 
- Protected Attributes inherited from gridfire::DefinedEngineView
bool m_isStale = true
 
DynamicEngine & m_baseEngine
 
GraphEngine & m_baseEngine
 

Member Typedef Documentation

@@ -282,8 +289,8 @@ Additional Inherited Members

Constructor & Destructor Documentation

- -

◆ FileDefinedEngineView()

+ +

◆ FileDefinedEngineView()

@@ -294,7 +301,7 @@ Additional Inherited Members gridfire::FileDefinedEngineView::FileDefinedEngineView ( - DynamicEngine & baseEngine, + GraphEngine & baseEngine, diff --git a/docs/html/classgridfire_1_1_file_defined_engine_view.js b/docs/html/classgridfire_1_1_file_defined_engine_view.js index 0914f361..5f10ec97 100644 --- a/docs/html/classgridfire_1_1_file_defined_engine_view.js +++ b/docs/html/classgridfire_1_1_file_defined_engine_view.js @@ -2,7 +2,7 @@ var classgridfire_1_1_file_defined_engine_view = [ [ "Config", "classgridfire_1_1_file_defined_engine_view.html#a63f8f85e75ecaab6fa39d48d7a846187", null ], [ "LogManager", "classgridfire_1_1_file_defined_engine_view.html#acbb1a9bcb775e6d50de512a333afed08", null ], - [ "FileDefinedEngineView", "classgridfire_1_1_file_defined_engine_view.html#a8f2f64bab0f516ed2a6fd529912e0acd", null ], + [ "FileDefinedEngineView", "classgridfire_1_1_file_defined_engine_view.html#a276a5041dd7c17946b9769b7c0f034a4", null ], [ "getNetworkFile", "classgridfire_1_1_file_defined_engine_view.html#ae0c35d8963b6ed05aeb88089ce301718", null ], [ "getParser", "classgridfire_1_1_file_defined_engine_view.html#aea834dc382ff1d663040db4532ea928f", null ], [ "m_config", "classgridfire_1_1_file_defined_engine_view.html#a7a80966c023ae722239491af58609362", null ], diff --git a/docs/html/classgridfire_1_1_graph_engine-members.html b/docs/html/classgridfire_1_1_graph_engine-members.html index 2d97c0f6..5039695d 100644 --- a/docs/html/classgridfire_1_1_graph_engine-members.html +++ b/docs/html/classgridfire_1_1_graph_engine-members.html @@ -29,7 +29,7 @@ -
GridFire 0.6.0 +
GridFire v0.7.0-alpha
General Purpose Nuclear Network
@@ -105,73 +105,85 @@ $(function(){initNavTree('classgridfire_1_1_graph_engine.html',''); initResizabl

This is the complete list of members for gridfire::GraphEngine, including all inherited members.

- - - + + + + + - - + + - + - + + + - - - - - - - - - - + + + + + + + + + + + + - - - + + + + + - - - - - - + + + + + + + + + + - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + diff --git a/docs/html/classgridfire_1_1_graph_engine.html b/docs/html/classgridfire_1_1_graph_engine.html index 4246ad9d..9cca1535 100644 --- a/docs/html/classgridfire_1_1_graph_engine.html +++ b/docs/html/classgridfire_1_1_graph_engine.html @@ -29,7 +29,7 @@ @@ -103,6 +103,7 @@ $(function(){initNavTree('classgridfire_1_1_graph_engine.html',''); initResizabl Classes | Public Member Functions | Static Public Member Functions | +Private Types | Private Member Functions | Private Attributes | List of all members @@ -141,19 +142,31 @@ Public Member Functions + + + + + - + + + + + + + + @@ -168,6 +181,7 @@ Public Member Functions + @@ -178,12 +192,20 @@ Public Member Functions + + + + + + + - + + @@ -212,10 +234,11 @@ Public Member Functions - - - + + + + @@ -235,9 +258,15 @@ Public Member Functions - - - + + + + + + + + + @@ -249,6 +278,15 @@ Static Public Member Functions
calculateAllDerivatives(const std::vector< T > &Y_in, T T9, T rho, T Ye, T mue) constgridfire::GraphEngineprivate
calculateAllDerivativesUsingPrecomputation(const fourdst::composition::Composition &comp, const std::vector< double > &bare_rates, const std::vector< double > &bare_reverse_rates, double T9, double rho) constgridfire::GraphEngineprivate
calculateEpsDerivatives(const fourdst::composition::Composition &comp, double T9, double rho) const overridegridfire::GraphEnginevirtual
calculateAllDerivatives(const std::vector< T > &Y_in, T T9, T rho, T Ye, T mue, std::function< std::optional< size_t >(const fourdst::atomic::Species &)> speciesLookup, const std::function< bool(const reaction::Reaction &)> &reactionLookup) constgridfire::GraphEngineprivate
calculateAllDerivatives(const std::vector< T > &Y_in, const T T9, const T rho, const T Ye, const T mue, const std::function< std::optional< size_t >(const fourdst::atomic::Species &)> speciesLookup, const std::function< bool(const reaction::Reaction &)> &reactionLookup) constgridfire::GraphEngine
calculateAllDerivativesUsingPrecomputation(const fourdst::composition::Composition &comp, const std::vector< double > &bare_rates, const std::vector< double > &bare_reverse_rates, double T9, double rho, const reaction::ReactionSet &activeReactions) constgridfire::GraphEngineprivate
calculateEpsDerivatives(const fourdst::composition::Composition &comp, double T9, double rho) const overridegridfire::GraphEnginevirtual
calculateEpsDerivatives(const fourdst::composition::Composition &comp, double T9, double rho, const reaction::ReactionSet &activeReactions) constgridfire::GraphEngine
calculateMolarReactionFlow(const reaction::Reaction &reaction, const fourdst::composition::Composition &comp, double T9, double rho) const overridegridfire::GraphEnginevirtual
calculateMolarReactionFlow(const reaction::Reaction &reaction, const std::vector< T > &Y, const T T9, const T rho, T Ye, T mue) constgridfire::GraphEngineprivate
calculateReverseMolarReactionFlow(const T T9, const T rho, std::vector< T > screeningFactors, const std::vector< T > &Y, size_t reactionIndex, const reaction::Reaction &reaction) constgridfire::GraphEngineprivate
calculateMolarReactionFlow(const reaction::Reaction &reaction, const std::vector< T > &Y, T T9, T rho, T Ye, T mue, const std::function< std::optional< size_t >(const fourdst::atomic::Species &)> &speciesIDLookup) constgridfire::GraphEngineprivate
calculateReverseMolarReactionFlow(T T9, T rho, std::vector< T > screeningFactors, const std::vector< T > &Y, size_t reactionIndex, const reaction::Reaction &reaction) constgridfire::GraphEngineprivate
calculateReverseRate(const reaction::Reaction &reaction, double T9, double rho, const fourdst::composition::Composition &comp) constgridfire::GraphEngine
calculateReverseRateTwoBody(const reaction::Reaction &reaction, const double T9, const double forwardRate, const double expFactor) constgridfire::GraphEngine
calculateReverseRateTwoBody(const reaction::Reaction &reaction, double T9, double forwardRate, double expFactor) constgridfire::GraphEngine
calculateReverseRateTwoBodyDerivative(const reaction::Reaction &reaction, double T9, double rho, const fourdst::composition::Composition &comp, double reverseRate) constgridfire::GraphEngine
calculateRHSAndEnergy(const fourdst::composition::Composition &comp, double T9, double rho) const overridegridfire::GraphEnginevirtual
collectAtomicReverseRateAtomicBases()gridfire::GraphEngineprivate
calculateRHSAndEnergy(const fourdst::composition::Composition &comp, double T9, double rho, const reaction::ReactionSet &activeReactions) constgridfire::GraphEngine
collectAtomicReverseRateAtomicBases()gridfire::GraphEngineprivate
collectComposition(fourdst::composition::Composition &comp) const overridegridfire::GraphEnginevirtual
collectNetworkSpecies()gridfire::GraphEngineprivate
exportToCSV(const std::string &filename) constgridfire::GraphEngine
exportToDot(const std::string &filename) constgridfire::GraphEngine
generateJacobianMatrix(const fourdst::composition::Composition &comp, double T9, double rho) const overridegridfire::GraphEnginevirtual
generateJacobianMatrix(const fourdst::composition::Composition &comp, double T9, double rho, const SparsityPattern &sparsityPattern) const overridegridfire::GraphEnginevirtual
generateStoichiometryMatrix() overridegridfire::GraphEnginevirtual
getDepth() const overridegridfire::GraphEnginevirtual
getJacobianMatrixEntry(const fourdst::atomic::Species &rowSpecies, const fourdst::atomic::Species &colSpecies) const overridegridfire::GraphEnginevirtual
getNetReactionStoichiometry(const reaction::Reaction &reaction)gridfire::GraphEnginestatic
getNetworkReactions() const overridegridfire::GraphEnginevirtual
getNetworkSpecies() const overridegridfire::GraphEnginevirtual
getPartitionFunction() constgridfire::GraphEngine
getScreeningModel() const overridegridfire::GraphEnginevirtual
getSpeciesDestructionTimescales(const fourdst::composition::Composition &comp, double T9, double rho) const overridegridfire::GraphEnginevirtual
generateJacobianMatrix(const fourdst::composition::Composition &comp, double T9, double rho, const std::vector< fourdst::atomic::Species > &activeSpecies) const overridegridfire::GraphEnginevirtual
generateJacobianMatrix(const fourdst::composition::Composition &comp, double T9, double rho, const SparsityPattern &sparsityPattern) const overridegridfire::GraphEnginevirtual
generateStoichiometryMatrix() overridegridfire::GraphEnginevirtual
getDepth() const overridegridfire::GraphEnginevirtual
getJacobianMatrixEntry(const fourdst::atomic::Species &rowSpecies, const fourdst::atomic::Species &colSpecies) const overridegridfire::GraphEnginevirtual
getNetReactionStoichiometry(const reaction::Reaction &reaction)gridfire::GraphEnginestatic
getNetworkReactions() const overridegridfire::GraphEnginevirtual
getNetworkSpecies() const overridegridfire::GraphEnginevirtual
getPartitionFunction() constgridfire::GraphEngine
getScreeningModel() const overridegridfire::GraphEnginevirtual
getSpeciesDestructionTimescales(const fourdst::composition::Composition &comp, double T9, double rho) const overridegridfire::GraphEnginevirtual
getSpeciesDestructionTimescales(const fourdst::composition::Composition &comp, double T9, double rho, const reaction::ReactionSet &activeReactions) constgridfire::GraphEngine
getSpeciesIndex(const fourdst::atomic::Species &species) const overridegridfire::GraphEnginevirtual
getSpeciesTimescales(const fourdst::composition::Composition &comp, double T9, double rho) const overridegridfire::GraphEnginevirtual
getStoichiometryMatrixEntry(const fourdst::atomic::Species &species, const reaction::Reaction &reaction) const overridegridfire::GraphEnginevirtual
GraphEngine(const fourdst::composition::Composition &composition, BuildDepthType=NetworkBuildDepth::Full)gridfire::GraphEngineexplicit
GraphEngine(const fourdst::composition::Composition &composition, const partition::PartitionFunction &partitionFunction, BuildDepthType buildDepth=NetworkBuildDepth::Full)gridfire::GraphEngineexplicit
getSpeciesTimescales(const fourdst::composition::Composition &comp, double T9, double rho, const reaction::ReactionSet &activeReactions) constgridfire::GraphEngine
getStoichiometryMatrixEntry(const fourdst::atomic::Species &species, const reaction::Reaction &reaction) const overridegridfire::GraphEnginevirtual
GraphEngine(const fourdst::composition::Composition &composition, BuildDepthType=NetworkBuildDepth::Full)gridfire::GraphEngineexplicit
GraphEngine(const fourdst::composition::Composition &composition, const partition::PartitionFunction &partitionFunction, BuildDepthType buildDepth=NetworkBuildDepth::Full)gridfire::GraphEngineexplicit
GraphEngine(const fourdst::composition::Composition &composition, const partition::PartitionFunction &partitionFunction, BuildDepthType buildDepth, NetworkConstructionFlags reactionTypes)gridfire::GraphEngineexplicit
GraphEngine(const reaction::ReactionSet &reactions)gridfire::GraphEngineexplicit
involvesSpecies(const fourdst::atomic::Species &species) constgridfire::GraphEngine
isPrecomputationEnabled() constgridfire::GraphEngine
isStale(const NetIn &netIn) overridegridfire::GraphEnginevirtual
isUsingReverseReactions() constgridfire::GraphEngine
m_atomicReverseRatesgridfire::GraphEngineprivate
m_configgridfire::GraphEngineprivate
m_constantsgridfire::GraphEngineprivate
m_depthgridfire::GraphEngineprivate
m_epsADFungridfire::GraphEnginemutableprivate
m_full_jacobian_sparsity_patterngridfire::GraphEngineprivate
JacobianMatrixState enum namegridfire::GraphEngineprivate
m_atomicReverseRatesgridfire::GraphEngineprivate
m_configgridfire::GraphEngineprivate
m_constantsgridfire::GraphEngineprivate
m_depthgridfire::GraphEngineprivate
m_epsADFungridfire::GraphEnginemutableprivate
m_full_jacobian_sparsity_patterngridfire::GraphEngineprivate
m_full_sparsity_setgridfire::GraphEngineprivate
m_indexToSpeciesMapgridfire::GraphEngineprivate
m_jac_workgridfire::GraphEnginemutableprivate
m_jacobianMatrixgridfire::GraphEnginemutableprivate
m_jacobianMatrixStategridfire::GraphEnginemutableprivate
m_jacobianMatrixStateNameMapgridfire::GraphEngineprivate
m_loggergridfire::GraphEngineprivate
m_networkSpeciesgridfire::GraphEngineprivate
m_networkSpeciesMapgridfire::GraphEngineprivate
m_partitionFunctiongridfire::GraphEngineprivate
m_precomputedReactionsgridfire::GraphEngineprivate
m_reactionIDMapgridfire::GraphEngineprivate
m_reactionsgridfire::GraphEngineprivate
m_rhsADFungridfire::GraphEnginemutableprivate
m_screeningModelgridfire::GraphEngineprivate
m_screeningTypegridfire::GraphEngineprivate
m_speciesToIndexMapgridfire::GraphEngineprivate
m_stoichiometryMatrixgridfire::GraphEngineprivate
m_usePrecomputationgridfire::GraphEngineprivate
m_useReverseReactionsgridfire::GraphEngineprivate
m_weakRateInterpolatorgridfire::GraphEngineprivate
mapNetInToMolarAbundanceVector(const NetIn &netIn) const overridegridfire::GraphEnginevirtual
populateReactionIDMap()gridfire::GraphEngineprivate
populateSpeciesToIndexMap()gridfire::GraphEngineprivate
precomputeNetwork()gridfire::GraphEngineprivate
primeEngine(const NetIn &netIn) overridegridfire::GraphEnginevirtual
rebuild(const fourdst::composition::Composition &comp, const BuildDepthType depth) overridegridfire::GraphEnginevirtual
recordADTape() constgridfire::GraphEngineprivate
recordEpsADTape() constgridfire::GraphEngineprivate
m_precomputedReactionIndexMapgridfire::GraphEngineprivate
m_precomputedReactionsgridfire::GraphEngineprivate
m_reactionIDMapgridfire::GraphEngineprivate
m_reactionsgridfire::GraphEngineprivate
m_rhsADFungridfire::GraphEnginemutableprivate
m_screeningModelgridfire::GraphEngineprivate
m_screeningTypegridfire::GraphEngineprivate
m_speciesToIndexMapgridfire::GraphEngineprivate
m_stoichiometryMatrixgridfire::GraphEngineprivate
m_usePrecomputationgridfire::GraphEngineprivate
m_useReverseReactionsgridfire::GraphEngineprivate
m_weakRateInterpolatorgridfire::GraphEngineprivate
mapNetInToMolarAbundanceVector(const NetIn &netIn) const overridegridfire::GraphEnginevirtual
populateReactionIDMap()gridfire::GraphEngineprivate
populateSpeciesToIndexMap()gridfire::GraphEngineprivate
precomputeNetwork()gridfire::GraphEngineprivate
primeEngine(const NetIn &netIn) overridegridfire::GraphEnginevirtual
rebuild(const fourdst::composition::Composition &comp, BuildDepthType depth) overridegridfire::GraphEnginevirtual
recordADTape() constgridfire::GraphEngineprivate
reserveJacobianMatrix() constgridfire::GraphEngineprivate
setNetworkReactions(const reaction::ReactionSet &reactions) overridegridfire::GraphEnginevirtual
setPrecomputation(bool precompute)gridfire::GraphEngine
-
GridFire 0.6.0 +
GridFire v0.7.0-alpha
General Purpose Nuclear Network
 
 GraphEngine (const fourdst::composition::Composition &composition, const partition::PartitionFunction &partitionFunction, BuildDepthType buildDepth=NetworkBuildDepth::Full)
 
 GraphEngine (const fourdst::composition::Composition &composition, const partition::PartitionFunction &partitionFunction, BuildDepthType buildDepth, NetworkConstructionFlags reactionTypes)
 
 GraphEngine (const reaction::ReactionSet &reactions)
 Constructs a GraphEngine from a set of reactions.
 
std::expected< StepDerivatives< double >, expectations::StaleEngineError > calculateRHSAndEnergy (const fourdst::composition::Composition &comp, double T9, double rho) const override
 Calculates the right-hand side (dY/dt) and energy generation rate.
 
std::expected< StepDerivatives< double >, expectations::StaleEngineError > calculateRHSAndEnergy (const fourdst::composition::Composition &comp, double T9, double rho, const reaction::ReactionSet &activeReactions) const
 Calculates the right-hand side (dY/dt) and energy generation rate for a subset of reactions.
 
EnergyDerivatives calculateEpsDerivatives (const fourdst::composition::Composition &comp, double T9, double rho) const override
 Calculate the derivatives of the energy generation rate with respect to T and rho.
 Calculates the derivatives of the energy generation rate with respect to temperature and density.
 
EnergyDerivatives calculateEpsDerivatives (const fourdst::composition::Composition &comp, double T9, double rho, const reaction::ReactionSet &activeReactions) const
 Calculates the derivatives of the energy generation rate with respect to temperature and density for a subset of reactions.
 
void generateJacobianMatrix (const fourdst::composition::Composition &comp, double T9, double rho) const override
 Generates the Jacobian matrix for the current state.
 
void generateJacobianMatrix (const fourdst::composition::Composition &comp, double T9, double rho, const std::vector< fourdst::atomic::Species > &activeSpecies) const override
 Generates the Jacobian matrix for the current state with a specified set of active species. generally this will be much faster than the full matrix generation. Here we use forward mode to generate the Jacobian only for the active species.
 
void generateJacobianMatrix (const fourdst::composition::Composition &comp, double T9, double rho, const SparsityPattern &sparsityPattern) const override
 Generates the Jacobian matrix for the current state with a specified sparsity pattern.
 
void generateStoichiometryMatrix () override
 Generates the stoichiometry matrix for the network.
 Gets the set of logical reactions in the network.
 
void setNetworkReactions (const reaction::ReactionSet &reactions) override
 Sets the reactions for the network.
 
double getJacobianMatrixEntry (const fourdst::atomic::Species &rowSpecies, const fourdst::atomic::Species &colSpecies) const override
 Gets an entry from the previously generated Jacobian matrix.
std::expected< std::unordered_map< fourdst::atomic::Species, double >, expectations::StaleEngineError > getSpeciesTimescales (const fourdst::composition::Composition &comp, double T9, double rho) const override
 Computes timescales for all species in the network.
 
std::expected< std::unordered_map< fourdst::atomic::Species, double >, expectations::StaleEngineError > getSpeciesTimescales (const fourdst::composition::Composition &comp, double T9, double rho, const reaction::ReactionSet &activeReactions) const
 Computes timescales for all species in the network considering a subset of reactions.
 
std::expected< std::unordered_map< fourdst::atomic::Species, double >, expectations::StaleEngineError > getSpeciesDestructionTimescales (const fourdst::composition::Composition &comp, double T9, double rho) const override
 Computes destruction timescales for all species in the network.
 
std::expected< std::unordered_map< fourdst::atomic::Species, double >, expectations::StaleEngineError > getSpeciesDestructionTimescales (const fourdst::composition::Composition &comp, double T9, double rho, const reaction::ReactionSet &activeReactions) const
 Computes destruction timescales for all species in the network considering a subset of reactions.
 
fourdst::composition::Composition update (const NetIn &netIn) override
 Update the internal state of the engine.
 Updates the state of the network and the composition to be usable for the current network.
 
bool isStale (const NetIn &netIn) override
 Checks if the engine view is stale and needs to be updated.
 
bool involvesSpecies (const fourdst::atomic::Species &species) const
 Checks if a given species is involved in the network.
double calculateReverseRate (const reaction::Reaction &reaction, double T9, double rho, const fourdst::composition::Composition &comp) const
 Calculates the reverse rate for a given reaction.
 
double calculateReverseRateTwoBody (const reaction::Reaction &reaction, const double T9, const double forwardRate, const double expFactor) const
 Calculates the reverse rate for a two-body reaction.
 
double calculateReverseRateTwoBody (const reaction::Reaction &reaction, double T9, double forwardRate, double expFactor) const
 Calculates the reverse rate for a two-body reaction.
 
double calculateReverseRateTwoBodyDerivative (const reaction::Reaction &reaction, double T9, double rho, const fourdst::composition::Composition &comp, double reverseRate) const
 Calculates the derivative of the reverse rate for a two-body reaction with respect to temperature.
 
bool isUsingReverseReactions () const
 Checks if reverse reactions are enabled.
BuildDepthType getDepth () const override
 Gets the depth of the network.
 
void rebuild (const fourdst::composition::Composition &comp, const BuildDepthType depth) override
 Rebuilds the reaction network based on a new composition.
 
void rebuild (const fourdst::composition::Composition &comp, BuildDepthType depth) override
 Rebuilds the reaction network based on a new composition.
 
fourdst::composition::Composition collectComposition (fourdst::composition::Composition &comp) const override
 This will return the input comp with the molar abundances of any species not registered in that but registered in the engine active species set to 0.0.
 
template<IsArithmeticOrAD T>
StepDerivatives< T > calculateAllDerivatives (const std::vector< T > &Y_in, const T T9, const T rho, const T Ye, const T mue, const std::function< std::optional< size_t >(const fourdst::atomic::Species &)> speciesLookup, const std::function< bool(const reaction::Reaction &)> &reactionLookup) const
 
- Public Member Functions inherited from gridfire::Engine
virtual ~Engine ()=default
 Virtual destructor.
 Gets the net stoichiometry for a given reaction.
 
+ + + +

+Private Types

enum class  JacobianMatrixState { UNINITIALIZED +, STALE +, READY_DENSE +, READY_SPARSE + }
 
@@ -269,8 +307,6 @@ Private Member Functions - - @@ -278,22 +314,24 @@ Private Member Functions - - - - - - - - - - - - - + + + + + + + + + + + + +

Private Member Functions

void syncInternalMaps ()
void recordADTape () const
 Records the AD tape for the right-hand side of the ODE.
 
void recordEpsADTape () const
 
void collectAtomicReverseRateAtomicBases ()
 
void precomputeNetwork ()
bool validateConservation () const
 Validates mass and charge conservation across all reactions.
 
StepDerivatives< double > calculateAllDerivativesUsingPrecomputation (const fourdst::composition::Composition &comp, const std::vector< double > &bare_rates, const std::vector< double > &bare_reverse_rates, double T9, double rho) const
 
template<IsArithmeticOrAD T>
T calculateMolarReactionFlow (const reaction::Reaction &reaction, const std::vector< T > &Y, const T T9, const T rho, T Ye, T mue) const
 Calculates the molar reaction flow for a given reaction.
 
template<IsArithmeticOrAD T>
T calculateReverseMolarReactionFlow (const T T9, const T rho, std::vector< T > screeningFactors, const std::vector< T > &Y, size_t reactionIndex, const reaction::Reaction &reaction) const
 
template<IsArithmeticOrAD T>
StepDerivatives< T > calculateAllDerivatives (const std::vector< T > &Y_in, T T9, T rho, T Ye, T mue) const
 Calculates all derivatives (dY/dt) and the energy generation rate.
 
StepDerivatives< double > calculateAllDerivativesUsingPrecomputation (const fourdst::composition::Composition &comp, const std::vector< double > &bare_rates, const std::vector< double > &bare_reverse_rates, double T9, double rho, const reaction::ReactionSet &activeReactions) const
 
template<IsArithmeticOrAD T>
T calculateMolarReactionFlow (const reaction::Reaction &reaction, const std::vector< T > &Y, T T9, T rho, T Ye, T mue, const std::function< std::optional< size_t >(const fourdst::atomic::Species &)> &speciesIDLookup) const
 Calculates the molar reaction flow for a given reaction.
 
template<IsArithmeticOrAD T>
T calculateReverseMolarReactionFlow (T T9, T rho, std::vector< T > screeningFactors, const std::vector< T > &Y, size_t reactionIndex, const reaction::Reaction &reaction) const
 
template<IsArithmeticOrAD T>
StepDerivatives< T > calculateAllDerivatives (const std::vector< T > &Y_in, T T9, T rho, T Ye, T mue, std::function< std::optional< size_t >(const fourdst::atomic::Species &)> speciesLookup, const std::function< bool(const reaction::Reaction &)> &reactionLookup) const
 Calculates all derivatives (dY/dt) and the energy generation rate.
 
+ + @@ -327,6 +365,8 @@ Private Attributes + + @@ -339,6 +379,9 @@ Private Attributes + + + @@ -357,6 +400,9 @@ Private Attributes + + + @@ -374,9 +420,38 @@ Private Attributes
  • Exporting the network to DOT and CSV formats for visualization and analysis.
    • See also
    engine_abstract.h
    -

    Constructor & Destructor Documentation

    +

    Member Enumeration Documentation

    + +

    ◆ JacobianMatrixState

    + +
    +
    +

    Private Attributes

    std::unordered_map< JacobianMatrixState, std::string > m_jacobianMatrixStateNameMap
     
    Config & m_config = Config::getInstance()
     
    quill::Logger * m_logger = LogManager::getInstance().getLogger("log")
    boost::numeric::ublas::compressed_matrix< double > m_jacobianMatrix
     Jacobian matrix (species x species).
     
    JacobianMatrixState m_jacobianMatrixState = JacobianMatrixState::UNINITIALIZED
     
    CppAD::ADFun< double > m_rhsADFun
     CppAD function for the right-hand side of the ODE.
     
    CppAD::sparse_rc< std::vector< size_t > > m_full_jacobian_sparsity_pattern
     Full sparsity pattern for the Jacobian matrix.
     
    std::set< std::pair< size_t, size_t > > m_full_sparsity_set
     For quick lookups of the base sparsity pattern.
     
    std::vector< std::unique_ptr< AtomicReverseRate > > m_atomicReverseRates
     
    screening::ScreeningType m_screeningType = screening::ScreeningType::BARE
    std::vector< PrecomputedReaction > m_precomputedReactions
     Precomputed reactions for efficiency.
     
    std::unordered_map< uint64_t, size_t > m_precomputedReactionIndexMap
     Set of hashed precomputed reactions for quick lookup.
     
    std::unique_ptr< partition::PartitionFunction > m_partitionFunction
     Partition function for the network.
     
    + + + + +
    + + + + +
    enum class gridfire::GraphEngine::JacobianMatrixState
    +     		+strongprivate
    +
    + + + + + +
    Enumerator
    UNINITIALIZED 
    STALE 
    READY_DENSE 
    READY_SPARSE 
    + +
    +
    +

    Constructor & Destructor Documentation

    -

    ◆ GraphEngine() [1/3]

    +

    ◆ GraphEngine() [1/4]

    @@ -410,12 +485,12 @@ Private Attributes

    This constructor builds the reaction network from the given composition using the build_reaclib_nuclear_network function.

    -
    See also
    build_reaclib_nuclear_network
    +
    See also
    build_reaclib_nuclear_network
    -

    ◆ GraphEngine() [2/3]

    +

    ◆ GraphEngine() [2/4]

    @@ -446,10 +521,49 @@ Private Attributes
    +
    +
    + +

    ◆ GraphEngine() [3/4]

    + +
    +
    + + + + + +
    + + + + + + + + + + + + + + + + + + + + + +
    gridfire::GraphEngine::GraphEngine (const fourdst::composition::Composition & composition,
    const partition::PartitionFunction & partitionFunction,
    BuildDepthType buildDepth,
    NetworkConstructionFlags reactionTypes )
    +     		+explicit
    +
    +
    -

    ◆ GraphEngine() [3/3]

    +

    ◆ GraphEngine() [4/4]

    @@ -483,8 +597,56 @@ Private Attributes

    Member Function Documentation

    - -

    ◆ calculateAllDerivatives()

    + +

    ◆ calculateAllDerivatives() [1/2]

    + +
    +
    +
    +template<IsArithmeticOrAD T>
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    StepDerivatives< T > gridfire::GraphEngine::calculateAllDerivatives (const std::vector< T > & Y_in,
    const T T9,
    const T rho,
    const T Ye,
    const T mue,
    const std::function< std::optional< size_t >(const fourdst::atomic::Species &)> speciesLookup,
    const std::function< bool(const reaction::Reaction &)> & reactionLookup ) const
    +
    + +
    +
    + +

    ◆ calculateAllDerivatives() [2/2]

    @@ -517,7 +679,17 @@ template<IsArithmeticOrAD T>
    - T mue ) const + T mue, + + + + + std::function< std::optional< size_t >(const fourdst::atomic::Species &)> speciesLookup, + + + + + const std::function< bool(const reaction::Reaction &)> & reactionLookup ) const @@ -541,6 +713,8 @@ template<IsArithmeticOrAD T>
    rhoDensity in g/cm^3. Ye mue + speciesLookup + reactionLookup @@ -549,8 +723,8 @@ template<IsArithmeticOrAD T>
    - -

    ◆ calculateAllDerivativesUsingPrecomputation()

    + +

    ◆ calculateAllDerivativesUsingPrecomputation()

    @@ -581,7 +755,12 @@ template<IsArithmeticOrAD T>
    - double rho ) const + double rho, + + + + + const reaction::ReactionSet & activeReactions ) const @@ -594,7 +773,7 @@ template<IsArithmeticOrAD T>
    -

    ◆ calculateEpsDerivatives()

    +

    ◆ calculateEpsDerivatives() [1/2]

    @@ -625,7 +804,7 @@ template<IsArithmeticOrAD T>
    -

    Calculate the derivatives of the energy generation rate with respect to T and rho.

    +

    Calculates the derivatives of the energy generation rate with respect to temperature and density.

    Parameters
    @@ -634,11 +813,65 @@ template<IsArithmeticOrAD T>
    compComposition object containing current abundances.
    -
    Returns
    EnergyDerivatives containing dEps/dT and dEps/dRho.
    -

    This method computes the partial derivatives of the specific nuclear energy generation rate with respect to temperature and density for the current state.

    +
    Returns
    EnergyDerivatives struct containing the derivatives.
    +

    This method computes the partial derivatives of the specific nuclear energy generation rate with respect to temperature (∂ε/∂T) and density (∂ε/∂ρ)

    +
    See also
    EnergyDerivatives

    Implements gridfire::DynamicEngine.

    +
    + + +

    ◆ calculateEpsDerivatives() [2/2]

    + +
    +
    + + + + + +
    + + + + + + + + + + + + + + + + + + + + + +
    EnergyDerivatives gridfire::GraphEngine::calculateEpsDerivatives (const fourdst::composition::Composition & comp,
    double T9,
    double rho,
    const reaction::ReactionSet & activeReactions ) const
    +     		+nodiscard
    +
    + +

    Calculates the derivatives of the energy generation rate with respect to temperature and density for a subset of reactions.

    +
    Parameters
    + + + + + +
    compComposition object containing current abundances.
    T9Temperature in units of 10^9 K.
    rhoDensity in g/cm^3.
    activeReactionsThe set of reactions to include in the calculation.
    +
    +
    +
    Returns
    EnergyDerivatives struct containing the derivatives.
    +

    This method computes the partial derivatives of the specific nuclear energy generation rate with respect to temperature (∂ε/∂T) and density (∂ε/∂ρ) considering only the specified subset of reactions. This allows for flexible calculations with different reaction sets without modifying the engine's internal state.

    +
    See also
    EnergyDerivatives
    +
    @@ -695,8 +928,8 @@ template<IsArithmeticOrAD T> - -

    ◆ calculateMolarReactionFlow() [2/2]

    + +

    ◆ calculateMolarReactionFlow() [2/2]

    @@ -719,12 +952,12 @@ template<IsArithmeticOrAD T>
    - const T T9, + T T9, - const T rho, + T rho, @@ -734,7 +967,12 @@ template<IsArithmeticOrAD T>
    - T mue ) const + T mue, + + + + + const std::function< std::optional< size_t >(const fourdst::atomic::Species &)> & speciesIDLookup ) const @@ -759,6 +997,7 @@ template<IsArithmeticOrAD T> rhoDensity in g/cm^3. Ye mue + speciesIDLookup @@ -767,8 +1006,8 @@ template<IsArithmeticOrAD T> - -

    ◆ calculateReverseMolarReactionFlow()

    + +

    ◆ calculateReverseMolarReactionFlow()

    @@ -781,12 +1020,12 @@ template<IsArithmeticOrAD T>
    T gridfire::GraphEngine::calculateReverseMolarReactionFlow ( - const T T9, + T T9, - const T rho, + T rho, @@ -870,8 +1109,8 @@ template<IsArithmeticOrAD T>
    - -

    ◆ calculateReverseRateTwoBody()

    + +

    ◆ calculateReverseRateTwoBody()

    @@ -887,17 +1126,17 @@ template<IsArithmeticOrAD T>
    - const double T9, + double T9, - const double forwardRate, + double forwardRate, - const double expFactor ) const + double expFactor ) const @@ -964,10 +1203,24 @@ template<IsArithmeticOrAD T>
    +

    Calculates the derivative of the reverse rate for a two-body reaction with respect to temperature.

    +
    Parameters
    + + + + + + +
    reactionThe reaction for which to calculate the derivative.
    T9Temperature in units of 10^9 K.
    rhoDensity in g/cm^3.
    compComposition object containing current abundances.
    reverseRateThe reverse rate of the reaction.
    +
    +
    +
    Returns
    Derivative of the reverse rate with respect to temperature.
    +

    This method computes the derivative of the reverse rate using automatic differentiation.

    +
    -

    ◆ calculateRHSAndEnergy()

    +

    ◆ calculateRHSAndEnergy() [1/2]

    @@ -1013,6 +1266,59 @@ template<IsArithmeticOrAD T>

    Implements gridfire::Engine.

    +
    + + +

    ◆ calculateRHSAndEnergy() [2/2]

    + +
    +
    + + + + + +
    + + + + + + + + + + + + + + + + + + + + + +
    std::expected< StepDerivatives< double >, expectations::StaleEngineError > gridfire::GraphEngine::calculateRHSAndEnergy (const fourdst::composition::Composition & comp,
    double T9,
    double rho,
    const reaction::ReactionSet & activeReactions ) const
    +     		+nodiscard
    +
    + +

    Calculates the right-hand side (dY/dt) and energy generation rate for a subset of reactions.

    +
    Parameters
    + + + + + +
    compComposition object containing current abundances.
    T9Temperature in units of 10^9 K.
    rhoDensity in g/cm^3.
    activeReactionsThe set of reactions to include in the calculation.
    +
    +
    +
    Returns
    StepDerivatives<double> containing dY/dt and energy generation rate.
    +

    This method calculates the time derivatives of all species and the specific nuclear energy generation rate considering only the specified subset of reactions. This allows for flexible calculations with different reaction sets without modifying the engine's internal state.

    +
    See also
    StepDerivatives
    +
    @@ -1038,6 +1344,51 @@ template<IsArithmeticOrAD T>
    +
    + + +

    ◆ collectComposition()

    + +
    +
    + + + + + +
    + + + + + + + +
    fourdst::composition::Composition gridfire::GraphEngine::collectComposition (fourdst::composition::Composition & comp) const
    +     		+overridevirtual
    +
    + +

    This will return the input comp with the molar abundances of any species not registered in that but registered in the engine active species set to 0.0.

    +
    Note
    Effectively this method does not change input composition; rather it ensures that all species which can be tracked by an instance of GraphEngine are registered in the composition object.
    +
    +If a species is in the input comp but not in the network
    +
    Parameters
    + + +
    compInput Composition
    +
    +
    +
    Returns
    A new composition where all members of the active species set are registered. And any members not in comp have a molar abundance set to 0.
    +
    Exceptions
    + + +
    BadCollectionErrorIf the input composition contains species not present in the network species set
    +
    +
    + +

    Implements gridfire::DynamicEngine.

    +
    @@ -1135,7 +1486,7 @@ template<IsArithmeticOrAD T> -

    ◆ generateJacobianMatrix() [1/2]

    +

    ◆ generateJacobianMatrix() [1/3]

    @@ -1183,7 +1534,7 @@ template<IsArithmeticOrAD T>
    -

    ◆ generateJacobianMatrix() [2/2]

    +

    ◆ generateJacobianMatrix() [2/3]

    @@ -1219,7 +1570,75 @@ template<IsArithmeticOrAD T>
    -

    Reimplemented from gridfire::DynamicEngine.

    +

    Generates the Jacobian matrix for the current state with a specified sparsity pattern.

    +
    Parameters
    + + + + + +
    compComposition object containing current abundances.
    T9Temperature in units of 10^9 K.
    rhoDensity in g/cm^3.
    sparsityPatternThe sparsity pattern to use for the Jacobian matrix.
    +
    +
    +

    This method computes and stores the Jacobian matrix (∂(dY/dt)_i/∂Y_j) for the current state using automatic differentiation, taking into account the provided sparsity pattern. The matrix can then be accessed via getJacobianMatrixEntry().

    +
    See also
    getJacobianMatrixEntry()
    + +

    Implements gridfire::DynamicEngine.

    + +
    + + +

    ◆ generateJacobianMatrix() [3/3]

    + +
    +
    + + + + + +
    + + + + + + + + + + + + + + + + + + + + + +
    void gridfire::GraphEngine::generateJacobianMatrix (const fourdst::composition::Composition & comp,
    double T9,
    double rho,
    const std::vector< fourdst::atomic::Species > & activeSpecies ) const
    +     		+overridevirtual
    +
    + +

    Generates the Jacobian matrix for the current state with a specified set of active species. generally this will be much faster than the full matrix generation. Here we use forward mode to generate the Jacobian only for the active species.

    +
    Parameters
    + + + + + +
    compThe Composition object containing current abundances.
    T9The temperature in units of 10^9 K.
    rhoThe density in g/cm^3.
    activeSpeciesA vector of Species objects representing the active species.
    +
    +
    +
    See also
    getJacobianMatrixEntry()
    +
    +generateJacobianMatrix()
    + +

    Implements gridfire::DynamicEngine.

    @@ -1483,7 +1902,7 @@ template<IsArithmeticOrAD T> -

    ◆ getSpeciesDestructionTimescales()

    +

    ◆ getSpeciesDestructionTimescales() [1/2]

    @@ -1514,8 +1933,72 @@ template<IsArithmeticOrAD T>
    +

    Computes destruction timescales for all species in the network.

    +
    Parameters
    + + + + +
    compComposition object containing current abundances.
    T9Temperature in units of 10^9 K.
    rhoDensity in g/cm^3.
    +
    +
    +
    Returns
    Map from Species to their destruction timescales (s).
    +

    This method estimates the destruction timescale for each species, which can be useful for understanding reaction flows and equilibrium states.

    +

    Implements gridfire::DynamicEngine.

    +
    + + +

    ◆ getSpeciesDestructionTimescales() [2/2]

    + +
    +
    + + + + + +
    + + + + + + + + + + + + + + + + + + + + + +
    std::expected< std::unordered_map< fourdst::atomic::Species, double >, expectations::StaleEngineError > gridfire::GraphEngine::getSpeciesDestructionTimescales (const fourdst::composition::Composition & comp,
    double T9,
    double rho,
    const reaction::ReactionSet & activeReactions ) const
    +     		+nodiscard
    +
    + +

    Computes destruction timescales for all species in the network considering a subset of reactions.

    +
    Parameters
    + + + + + +
    compComposition object containing current abundances.
    T9Temperature in units of 10^9 K.
    rhoDensity in g/cm^3.
    activeReactionsThe set of reactions to include in the calculation.
    +
    +
    +
    Returns
    Map from Species to their destruction timescales (s).
    +

    This method estimates the destruction timescale for each species, considering only the specified subset of reactions. This allows for flexible calculations with different reaction sets without modifying the engine's internal state.

    +
    @@ -1556,7 +2039,7 @@ template<IsArithmeticOrAD T> -

    ◆ getSpeciesTimescales()

    +

    ◆ getSpeciesTimescales() [1/2]

    @@ -1601,6 +2084,58 @@ template<IsArithmeticOrAD T>

    Implements gridfire::DynamicEngine.

    +
    + + +

    ◆ getSpeciesTimescales() [2/2]

    + +
    +
    + + + + + +
    + + + + + + + + + + + + + + + + + + + + + +
    std::expected< std::unordered_map< fourdst::atomic::Species, double >, expectations::StaleEngineError > gridfire::GraphEngine::getSpeciesTimescales (const fourdst::composition::Composition & comp,
    double T9,
    double rho,
    const reaction::ReactionSet & activeReactions ) const
    +     		+nodiscard
    +
    + +

    Computes timescales for all species in the network considering a subset of reactions.

    +
    Parameters
    + + + + + +
    compComposition object containing current abundances.
    T9Temperature in units of 10^9 K.
    rhoDensity in g/cm^3.
    activeReactionsThe set of reactions to include in the calculation.
    +
    +
    +
    Returns
    Map from Species to their characteristic timescales (s).
    +

    This method estimates the timescale for abundance change of each species, considering only the specified subset of reactions. This allows for flexible calculations with different reaction sets without modifying the engine's internal state.

    +
    @@ -1732,6 +2267,16 @@ template<IsArithmeticOrAD T>
    +

    Checks if the engine view is stale and needs to be updated.

    +
    Parameters
    + + +
    netInThe current network input (unused).
    +
    +
    +
    Returns
    True if the view is stale, false otherwise.
    +
    Deprecated
    This method is deprecated and will be removed in future versions. Stale states are returned as part of the results of methods that require the ability to report them.
    +

    Implements gridfire::DynamicEngine.

    @@ -1920,8 +2465,8 @@ template<IsArithmeticOrAD T> - -

    ◆ rebuild()

    + +

    ◆ rebuild()

    @@ -1937,7 +2482,7 @@ template<IsArithmeticOrAD T>
    - const BuildDepthType depth ) + BuildDepthType depth ) @@ -1993,31 +2538,6 @@ template<IsArithmeticOrAD T>
    - - - -

    ◆ recordEpsADTape()

    - -
    -
    - - - - - -
    - - - - - - - -
    void gridfire::GraphEngine::recordEpsADTape () const
    -     		-private
    -
    -
    @@ -2071,6 +2591,15 @@ template<IsArithmeticOrAD T>
    +

    Sets the reactions for the network.

    +
    Parameters
    + + +
    reactionsThe set of reactions to use in the network.
    +
    +
    +

    This method replaces the current set of reactions in the network with the provided set. It marks the engine as stale, requiring regeneration of matrices and recalculation of rates.

    +

    Implements gridfire::DynamicEngine.

    @@ -2097,7 +2626,8 @@ template<IsArithmeticOrAD T> -

    This method allows enabling or disabling precomputation of reaction rates for performance optimization. When enabled, reaction rates are computed once and stored for later use.

    +

    This method allows enabling or disabling precomputation of reaction rates for performance optimization. When enabled, reaction rates are computed once and stored for later use.

    +
    Postcondition
    If precomputation is enabled, reaction rates will be precomputed and cached. If disabled, reaction rates will be computed on-the-fly as needed.
    @@ -2159,7 +2689,8 @@ template<IsArithmeticOrAD T> -

    This method allows enabling or disabling reverse reactions in the engine. If disabled, only forward reactions will be considered in calculations.

    +

    This method allows enabling or disabling reverse reactions in the engine. If disabled, only forward reactions will be considered in calculations.

    +
    Postcondition
    If reverse reactions are enabled, the engine will consider both forward and reverse reactions in its calculations. If disabled, only forward reactions will be considered.
    @@ -2214,19 +2745,15 @@ template<IsArithmeticOrAD T>
    -

    Update the internal state of the engine.

    +

    Updates the state of the network and the composition to be usable for the current network.

    +

    For graph engine all this does is ensure that the returned composition has all the species in the network registered. if a species was already in the composition is will keep its abundance, otherwise it will be added with zero abundance.

    Parameters
    - +
    netInA struct containing the current network input, such as temperature, density, and composition.
    netInThe input netIn to use, this includes the composition, temperature, and density
    -

    This method is intended to be implemented by derived classes to update their internal state based on the provided network conditions. For example, an adaptive engine might use this to re-evaluate which reactions and species are active. For other engines that do not support manually updating, this method might do nothing.

    -
    Usage Example:
    NetIn input = { ... };
    -
    myEngine.update(input);
    -
    gridfire::NetIn
    Definition network.h:51
    -
    -
    Postcondition
    The internal state of the engine is updated to reflect the new conditions.
    +
    Returns
    The updated composition that includes all species in the network.

    Implements gridfire::DynamicEngine.

    @@ -2396,6 +2923,30 @@ template<IsArithmeticOrAD T>

    Full sparsity pattern for the Jacobian matrix.

    + + + +

    ◆ m_full_sparsity_set

    + +
    +
    + + + + + +
    + + + + +
    std::set<std::pair<size_t, size_t> > gridfire::GraphEngine::m_full_sparsity_set
    +     		+private
    +
    + +

    For quick lookups of the base sparsity pattern.

    +
    @@ -2468,6 +3019,60 @@ template<IsArithmeticOrAD T>

    Jacobian matrix (species x species).

    + + + +

    ◆ m_jacobianMatrixState

    + +
    +
    + + + + + +
    + + + + +
    JacobianMatrixState gridfire::GraphEngine::m_jacobianMatrixState = JacobianMatrixState::UNINITIALIZED
    +     		+mutableprivate
    +
    + +
    +
    + +

    ◆ m_jacobianMatrixStateNameMap

    + +
    +
    + + + + + +
    + + + + +
    std::unordered_map<JacobianMatrixState, std::string> gridfire::GraphEngine::m_jacobianMatrixStateNameMap
    +     		+private
    +
    +Initial value:
    = {
    +
    {JacobianMatrixState::UNINITIALIZED, "Uninitialized"},
    +
    {JacobianMatrixState::STALE, "Stale"},
    +
    {JacobianMatrixState::READY_DENSE, "Ready (dense)"},
    +
    {JacobianMatrixState::READY_SPARSE, "Ready (sparse)"},
    +
    }
    +
    gridfire::GraphEngine::JacobianMatrixState::READY_DENSE
    @ READY_DENSE
    Definition engine_graph.h:782
    +
    gridfire::GraphEngine::JacobianMatrixState::STALE
    @ STALE
    Definition engine_graph.h:781
    +
    gridfire::GraphEngine::JacobianMatrixState::READY_SPARSE
    @ READY_SPARSE
    Definition engine_graph.h:783
    +
    gridfire::GraphEngine::JacobianMatrixState::UNINITIALIZED
    @ UNINITIALIZED
    Definition engine_graph.h:780
    +
    @@ -2562,6 +3167,30 @@ template<IsArithmeticOrAD T>

    Partition function for the network.

    + + + +

    ◆ m_precomputedReactionIndexMap

    + +
    +
    + + + + + +
    + + + + +
    std::unordered_map<uint64_t, size_t> gridfire::GraphEngine::m_precomputedReactionIndexMap
    +     		+private
    +
    + +

    Set of hashed precomputed reactions for quick lookup.

    +
    diff --git a/docs/html/classgridfire_1_1_graph_engine.js b/docs/html/classgridfire_1_1_graph_engine.js index 69d37f4d..546f1a14 100644 --- a/docs/html/classgridfire_1_1_graph_engine.js +++ b/docs/html/classgridfire_1_1_graph_engine.js @@ -3,25 +3,37 @@ var classgridfire_1_1_graph_engine = [ "AtomicReverseRate", "classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html", "classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate" ], [ "constants", "structgridfire_1_1_graph_engine_1_1constants.html", "structgridfire_1_1_graph_engine_1_1constants" ], [ "PrecomputedReaction", "structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html", "structgridfire_1_1_graph_engine_1_1_precomputed_reaction" ], + [ "JacobianMatrixState", "classgridfire_1_1_graph_engine.html#ac94adcb6d39f7633f326f038dca15ec6", [ + [ "UNINITIALIZED", "classgridfire_1_1_graph_engine.html#ac94adcb6d39f7633f326f038dca15ec6add652546039b18970b8dcf2cff824268", null ], + [ "STALE", "classgridfire_1_1_graph_engine.html#ac94adcb6d39f7633f326f038dca15ec6a4d855a061b3066dc14a3b12ed26b5456", null ], + [ "READY_DENSE", "classgridfire_1_1_graph_engine.html#ac94adcb6d39f7633f326f038dca15ec6a162cb379760275c9685281ee27025cdb", null ], + [ "READY_SPARSE", "classgridfire_1_1_graph_engine.html#ac94adcb6d39f7633f326f038dca15ec6abf43af1b1ac8bc6cb42296815a429ae3", null ] + ] ], [ "GraphEngine", "classgridfire_1_1_graph_engine.html#a38aaafb1d9a6548bc8e8cb672417bbbe", null ], [ "GraphEngine", "classgridfire_1_1_graph_engine.html#a3a03fbd767f495ca667f23789b07c293", null ], + [ "GraphEngine", "classgridfire_1_1_graph_engine.html#a35552299e1b774386f1e603a702fc7c2", null ], [ "GraphEngine", "classgridfire_1_1_graph_engine.html#a514cc6b5482d6a27902975da17b5e39e", null ], - [ "calculateAllDerivatives", "classgridfire_1_1_graph_engine.html#a8873331f5ae40a3f640dedbbed685ed9", null ], - [ "calculateAllDerivativesUsingPrecomputation", "classgridfire_1_1_graph_engine.html#aef12443d7980301d8bb89f4ba4890450", null ], + [ "calculateAllDerivatives", "classgridfire_1_1_graph_engine.html#a0a4b3ab5955b2d89f1201b81f19a6103", null ], + [ "calculateAllDerivatives", "classgridfire_1_1_graph_engine.html#ac2da85a22894d8a2138f2e0741fe9475", null ], + [ "calculateAllDerivativesUsingPrecomputation", "classgridfire_1_1_graph_engine.html#abd6211ca7dd762e8a7bc9729ccb81917", null ], [ "calculateEpsDerivatives", "classgridfire_1_1_graph_engine.html#ae0c9159cc3467fd85d1a5895f1786c47", null ], + [ "calculateEpsDerivatives", "classgridfire_1_1_graph_engine.html#a27defac90fa7582455d168aec8bd036c", null ], [ "calculateMolarReactionFlow", "classgridfire_1_1_graph_engine.html#a1675859971f0bd2db0650f8da54ed7eb", null ], - [ "calculateMolarReactionFlow", "classgridfire_1_1_graph_engine.html#a2bea809d2efb3a5e7cc065ec80baebce", null ], - [ "calculateReverseMolarReactionFlow", "classgridfire_1_1_graph_engine.html#a972d0705351167dc889a2f6c442e7a93", null ], + [ "calculateMolarReactionFlow", "classgridfire_1_1_graph_engine.html#a2a43655ee34869126636f4fe9d687694", null ], + [ "calculateReverseMolarReactionFlow", "classgridfire_1_1_graph_engine.html#a1cd8c6f34ab262e5ad30631ee4afb0b2", null ], [ "calculateReverseRate", "classgridfire_1_1_graph_engine.html#accf01734524a706ad03c9b9898af54b3", null ], - [ "calculateReverseRateTwoBody", "classgridfire_1_1_graph_engine.html#a01fc9fd5d576b66d07360d05e821c755", null ], + [ "calculateReverseRateTwoBody", "classgridfire_1_1_graph_engine.html#af18853273cbd53317ee4389c2241281c", null ], [ "calculateReverseRateTwoBodyDerivative", "classgridfire_1_1_graph_engine.html#a9340db538a507b96e186b60ba0450205", null ], [ "calculateRHSAndEnergy", "classgridfire_1_1_graph_engine.html#a7acc98647427981a9602d251c9288012", null ], + [ "calculateRHSAndEnergy", "classgridfire_1_1_graph_engine.html#a2a8c5234f68e9c1806795e7a4e10922c", null ], [ "collectAtomicReverseRateAtomicBases", "classgridfire_1_1_graph_engine.html#a29b338630c959449c15881935ac30746", null ], + [ "collectComposition", "classgridfire_1_1_graph_engine.html#a746ba3f5f61701cfd4f15578c1a4914a", null ], [ "collectNetworkSpecies", "classgridfire_1_1_graph_engine.html#aedf42d83bfcc28313b6b6454034d2efa", null ], [ "exportToCSV", "classgridfire_1_1_graph_engine.html#a832e2fe066381811a3e0464806ff5e95", null ], [ "exportToDot", "classgridfire_1_1_graph_engine.html#adac8c7d62bae76e17fc060e86dadd929", null ], [ "generateJacobianMatrix", "classgridfire_1_1_graph_engine.html#ae11f6267077025ca342e2e263ad87e5e", null ], [ "generateJacobianMatrix", "classgridfire_1_1_graph_engine.html#a4e0bbc6448999e2ef06879270b7d3dec", null ], + [ "generateJacobianMatrix", "classgridfire_1_1_graph_engine.html#abd59415d74e3d1da0bc059fa64af1689", null ], [ "generateStoichiometryMatrix", "classgridfire_1_1_graph_engine.html#aed726d36ee2b3796beff6067a1e4db38", null ], [ "getDepth", "classgridfire_1_1_graph_engine.html#a166a5f4349580f9aa0b930afec73fcc4", null ], [ "getJacobianMatrixEntry", "classgridfire_1_1_graph_engine.html#a8ab5308629b8707922e5954776254aa6", null ], @@ -31,8 +43,10 @@ var classgridfire_1_1_graph_engine = [ "getPartitionFunction", "classgridfire_1_1_graph_engine.html#add98ece49ec5c538bddf3cc77004fe44", null ], [ "getScreeningModel", "classgridfire_1_1_graph_engine.html#a697f2004e0d02c59e83c7890742d7c9a", null ], [ "getSpeciesDestructionTimescales", "classgridfire_1_1_graph_engine.html#a47df5a9c448dd1ce8654df819a6cc8ff", null ], + [ "getSpeciesDestructionTimescales", "classgridfire_1_1_graph_engine.html#a496bfc97e8db72faa147d2dab94fa5f1", null ], [ "getSpeciesIndex", "classgridfire_1_1_graph_engine.html#a9e426e6c178dd80bd58090489d3b2be9", null ], [ "getSpeciesTimescales", "classgridfire_1_1_graph_engine.html#a7dde968244f3c4934c7738445c709232", null ], + [ "getSpeciesTimescales", "classgridfire_1_1_graph_engine.html#a578ecf0e3b0e5197ed6b33c7abf8f770", null ], [ "getStoichiometryMatrixEntry", "classgridfire_1_1_graph_engine.html#ad90a2d770ebf098f0d6d5f5339961e95", null ], [ "involvesSpecies", "classgridfire_1_1_graph_engine.html#aa6202cee0c3c481eda77cc9a91bc126b", null ], [ "isPrecomputationEnabled", "classgridfire_1_1_graph_engine.html#a015f8975701f028c29835d3a9794e00f", null ], @@ -43,9 +57,8 @@ var classgridfire_1_1_graph_engine = [ "populateSpeciesToIndexMap", "classgridfire_1_1_graph_engine.html#a47202c43342b96480070874bffce1391", null ], [ "precomputeNetwork", "classgridfire_1_1_graph_engine.html#a92644bc333bff69c5685be4552ca12fd", null ], [ "primeEngine", "classgridfire_1_1_graph_engine.html#ae7a371be61ab09b3fa4a93f05bd44e5e", null ], - [ "rebuild", "classgridfire_1_1_graph_engine.html#ad9d6c70ace5cbbf7f3aa7b31fce39490", null ], + [ "rebuild", "classgridfire_1_1_graph_engine.html#ad593a2d1b8fbbc01b63b0133357364ac", null ], [ "recordADTape", "classgridfire_1_1_graph_engine.html#ab29ef3225c8fcda012b10765df064b63", null ], - [ "recordEpsADTape", "classgridfire_1_1_graph_engine.html#a16b8cd1b0e19b4d4519596a4e22eaf5c", null ], [ "reserveJacobianMatrix", "classgridfire_1_1_graph_engine.html#a8d0c0bd54a2908cff62dae7af0c149b5", null ], [ "setNetworkReactions", "classgridfire_1_1_graph_engine.html#a52288e2629609c8438a3c9bc3f910016", null ], [ "setPrecomputation", "classgridfire_1_1_graph_engine.html#a6c5410878496abc349ba30b691cdf0f1", null ], @@ -60,13 +73,17 @@ var classgridfire_1_1_graph_engine = [ "m_depth", "classgridfire_1_1_graph_engine.html#a80c73690d5af247ff9f2ba8b00abce01", null ], [ "m_epsADFun", "classgridfire_1_1_graph_engine.html#a1d5f6a3f217af7f4d0f95bdf7916b774", null ], [ "m_full_jacobian_sparsity_pattern", "classgridfire_1_1_graph_engine.html#a19b2eea0e8d05ac90f9fd7120bdc6e06", null ], + [ "m_full_sparsity_set", "classgridfire_1_1_graph_engine.html#af147a6953dcbb70ba3cc93039ac21c35", null ], [ "m_indexToSpeciesMap", "classgridfire_1_1_graph_engine.html#a8ff064c9996772281984f88ee492d04a", null ], [ "m_jac_work", "classgridfire_1_1_graph_engine.html#a250cc6350dc052fbdfdf9a02066e7891", null ], [ "m_jacobianMatrix", "classgridfire_1_1_graph_engine.html#a2f1718c89d4aaad028102724d18fa910", null ], + [ "m_jacobianMatrixState", "classgridfire_1_1_graph_engine.html#ad730251f4cd877006f2520be84ac85e9", null ], + [ "m_jacobianMatrixStateNameMap", "classgridfire_1_1_graph_engine.html#adc3758335b680d41edfdf0c64eeb27c6", null ], [ "m_logger", "classgridfire_1_1_graph_engine.html#a483979fc154adc88d029b3b672066d53", null ], [ "m_networkSpecies", "classgridfire_1_1_graph_engine.html#a92d26068ba139e47d335f5fe9e2814cc", null ], [ "m_networkSpeciesMap", "classgridfire_1_1_graph_engine.html#a30e09ed0bce6aa5fc89beaa316a7b827", null ], [ "m_partitionFunction", "classgridfire_1_1_graph_engine.html#a3621f36d77ea8c738ad7de6e5b35ca3e", null ], + [ "m_precomputedReactionIndexMap", "classgridfire_1_1_graph_engine.html#a183cbef618742d97b2b6edb60522eb6c", null ], [ "m_precomputedReactions", "classgridfire_1_1_graph_engine.html#a5d431d5385b1219ba29689eb29601ea3", null ], [ "m_reactionIDMap", "classgridfire_1_1_graph_engine.html#a5d6cc63b99b467c2a976d1fbaaa1dfa3", null ], [ "m_reactions", "classgridfire_1_1_graph_engine.html#ad3b97595871d1f62ee7f4726b601ebef", null ], diff --git a/docs/html/classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate-members.html b/docs/html/classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate-members.html index f44ddc72..219bc39a 100644 --- a/docs/html/classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate-members.html +++ b/docs/html/classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -107,10 +107,12 @@ $(function(){initNavTree('classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate - - - - + + + + + +
    AtomicReverseRate(const reaction::Reaction &reaction, const GraphEngine &engine)gridfire::GraphEngine::AtomicReverseRateinline
    for_sparse_jac(size_t q, const CppAD::vector< std::set< size_t > > &r, CppAD::vector< std::set< size_t > > &s) overridegridfire::GraphEngine::AtomicReverseRate
    forward(size_t p, size_t q, const CppAD::vector< bool > &vx, CppAD::vector< bool > &vy, const CppAD::vector< double > &tx, CppAD::vector< double > &ty) overridegridfire::GraphEngine::AtomicReverseRate
    m_enginegridfire::GraphEngine::AtomicReverseRateprivate
    m_reactiongridfire::GraphEngine::AtomicReverseRateprivate
    rev_sparse_jac(size_t q, const CppAD::vector< std::set< size_t > > &rt, CppAD::vector< std::set< size_t > > &st) overridegridfire::GraphEngine::AtomicReverseRate
    for_sparse_jac(size_t q, const CppAD::vector< bool > &r, CppAD::vector< bool > &s, const CppAD::vector< double > &x) overridegridfire::GraphEngine::AtomicReverseRate
    forward(size_t p, size_t q, const CppAD::vector< bool > &vx, CppAD::vector< bool > &vy, const CppAD::vector< double > &tx, CppAD::vector< double > &ty) overridegridfire::GraphEngine::AtomicReverseRate
    m_enginegridfire::GraphEngine::AtomicReverseRateprivate
    m_reactiongridfire::GraphEngine::AtomicReverseRateprivate
    rev_sparse_jac(size_t q, const CppAD::vector< std::set< size_t > > &rt, CppAD::vector< std::set< size_t > > &st) overridegridfire::GraphEngine::AtomicReverseRate
    rev_sparse_jac(size_t q, const CppAD::vector< bool > &rt, CppAD::vector< bool > &st, const CppAD::vector< double > &x) overridegridfire::GraphEngine::AtomicReverseRate
    reverse(size_t q, const CppAD::vector< double > &tx, const CppAD::vector< double > &ty, CppAD::vector< double > &px, const CppAD::vector< double > &py) overridegridfire::GraphEngine::AtomicReverseRate
    diff --git a/docs/html/classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html b/docs/html/classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html index 33a367e5..b7c8bda7 100644 --- a/docs/html/classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html +++ b/docs/html/classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -125,6 +125,10 @@ Public Member Functions   bool rev_sparse_jac (size_t q, const CppAD::vector< std::set< size_t > > &rt, CppAD::vector< std::set< size_t > > &st) override   +bool for_sparse_jac (size_t q, const CppAD::vector< bool > &r, CppAD::vector< bool > &s, const CppAD::vector< double > &x) override +  +bool rev_sparse_jac (size_t q, const CppAD::vector< bool > &rt, CppAD::vector< bool > &st, const CppAD::vector< double > &x) override +  @@ -164,8 +168,47 @@ Private Attributes

    Member Function Documentation

    + +

    ◆ for_sparse_jac() [1/2]

    + +
    +
    +

    Private Attributes

    + + + + +
    + + + + + + + + + + + + + + + + + + + + + +
    bool gridfire::GraphEngine::AtomicReverseRate::for_sparse_jac (size_t q,
    const CppAD::vector< bool > & r,
    CppAD::vector< bool > & s,
    const CppAD::vector< double > & x )
    +     		+override
    +
    + +
    + -

    ◆ for_sparse_jac()

    +

    ◆ for_sparse_jac() [2/2]

    @@ -245,10 +288,49 @@ Private Attributes
    +
    +
    + +

    ◆ rev_sparse_jac() [1/2]

    + +
    +
    + + + + + +
    + + + + + + + + + + + + + + + + + + + + + +
    bool gridfire::GraphEngine::AtomicReverseRate::rev_sparse_jac (size_t q,
    const CppAD::vector< bool > & rt,
    CppAD::vector< bool > & st,
    const CppAD::vector< double > & x )
    +     		+override
    +
    +
    -

    ◆ rev_sparse_jac()

    +

    ◆ rev_sparse_jac() [2/2]

    diff --git a/docs/html/classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.js b/docs/html/classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.js index 36c296dc..3889ce82 100644 --- a/docs/html/classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.js +++ b/docs/html/classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.js @@ -1,8 +1,10 @@ var classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate = [ [ "AtomicReverseRate", "classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a20d8e668f0af5fad5b7eda12564dc7cf", null ], + [ "for_sparse_jac", "classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#aa23b5a552fdbaff04ebdb0972924f5f2", null ], [ "for_sparse_jac", "classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#aec41632c2a362be33a1f7ff04204cbf4", null ], [ "forward", "classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#ad9b8dd0e8ba9c7745e33acc9a649d2e0", null ], + [ "rev_sparse_jac", "classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#af7fdc6ea57dcac2a908215e63df79f6d", null ], [ "rev_sparse_jac", "classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a881d4daf2b973d523548cd8d4021bdc4", null ], [ "reverse", "classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a4e8ff268c4377599c8798c7929ec2d5e", null ], [ "m_engine", "classgridfire_1_1_graph_engine_1_1_atomic_reverse_rate.html#a75d355a0bef27217165644affd0cca4d", null ], diff --git a/docs/html/classgridfire_1_1_multiscale_partitioning_engine_view-members.html b/docs/html/classgridfire_1_1_multiscale_partitioning_engine_view-members.html index ca210048..aa321906 100644 --- a/docs/html/classgridfire_1_1_multiscale_partitioning_engine_view-members.html +++ b/docs/html/classgridfire_1_1_multiscale_partitioning_engine_view-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -110,12 +110,14 @@ $(function(){initNavTree('classgridfire_1_1_multiscale_partitioning_engine_view. calculateEpsDerivatives(const fourdst::composition::Composition &comp, double T9, double rho) const overridegridfire::MultiscalePartitioningEngineViewvirtual calculateMolarReactionFlow(const reaction::Reaction &reaction, const fourdst::composition::Composition &comp, double T9, double rho) const overridegridfire::MultiscalePartitioningEngineViewvirtual calculateRHSAndEnergy(const fourdst::composition::Composition &comp, double T9, double rho) const overridegridfire::MultiscalePartitioningEngineViewvirtual - constructCandidateGroups(const std::vector< std::vector< fourdst::atomic::Species > > &candidate_pools, const fourdst::composition::Composition &comp, double T9, double rho) constgridfire::MultiscalePartitioningEngineViewprivate - equilibrateNetwork(const fourdst::composition::Composition &comp, double T9, double rho)gridfire::MultiscalePartitioningEngineView - equilibrateNetwork(const NetIn &netIn)gridfire::MultiscalePartitioningEngineView - exportToDot(const std::string &filename, const fourdst::composition::Composition &Y, double T9, double rho) constgridfire::MultiscalePartitioningEngineView - generateJacobianMatrix(const fourdst::composition::Composition &comp, double T9, double rho) const overridegridfire::MultiscalePartitioningEngineViewvirtual - gridfire::DynamicEngine::generateJacobianMatrix(const fourdst::composition::Composition &comp, double T9, double rho, const SparsityPattern &sparsityPattern) constgridfire::DynamicEngineinlinevirtual + collectComposition(fourdst::composition::Composition &comp) const overridegridfire::MultiscalePartitioningEngineViewvirtual + constructCandidateGroups(const std::vector< std::vector< fourdst::atomic::Species > > &candidate_pools, const fourdst::composition::Composition &comp, double T9, double rho) constgridfire::MultiscalePartitioningEngineViewprivate + equilibrateNetwork(const fourdst::composition::Composition &comp, double T9, double rho)gridfire::MultiscalePartitioningEngineView + equilibrateNetwork(const NetIn &netIn)gridfire::MultiscalePartitioningEngineView + exportToDot(const std::string &filename, const fourdst::composition::Composition &comp, double T9, double rho) constgridfire::MultiscalePartitioningEngineView + generateJacobianMatrix(const fourdst::composition::Composition &comp, double T9, double rho) const overridegridfire::MultiscalePartitioningEngineViewvirtual + generateJacobianMatrix(const fourdst::composition::Composition &comp, double T9, double rho, const std::vector< fourdst::atomic::Species > &activeSpecies) const overridegridfire::MultiscalePartitioningEngineViewvirtual + generateJacobianMatrix(const fourdst::composition::Composition &comp, double T9, double rho, const SparsityPattern &sparsityPattern) const overridegridfire::MultiscalePartitioningEngineViewvirtual generateStoichiometryMatrix() overridegridfire::MultiscalePartitioningEngineViewvirtual getBaseEngine() const overridegridfire::MultiscalePartitioningEngineViewvirtual getDepth() constgridfire::DynamicEngineinlinevirtual @@ -125,37 +127,40 @@ $(function(){initNavTree('classgridfire_1_1_multiscale_partitioning_engine_view. getNetworkReactions() const overridegridfire::MultiscalePartitioningEngineViewvirtual getNetworkSpecies() const overridegridfire::MultiscalePartitioningEngineViewvirtual getScreeningModel() const overridegridfire::MultiscalePartitioningEngineViewvirtual - getSpeciesDestructionTimescales(const fourdst::composition::Composition &comp, double T9, double rho) const overridegridfire::MultiscalePartitioningEngineViewvirtual + getSpeciesDestructionTimescales(const fourdst::composition::Composition &comp, double T9, double rho) const overridegridfire::MultiscalePartitioningEngineViewvirtual getSpeciesIndex(const fourdst::atomic::Species &species) const overridegridfire::MultiscalePartitioningEngineViewvirtual getSpeciesTimescales(const fourdst::composition::Composition &comp, double T9, double rho) const overridegridfire::MultiscalePartitioningEngineViewvirtual getStoichiometryMatrixEntry(const fourdst::atomic::Species &species, const reaction::Reaction &reaction) const overridegridfire::MultiscalePartitioningEngineViewvirtual identifyMeanSlowestPool(const std::vector< std::vector< fourdst::atomic::Species > > &pools, const fourdst::composition::Composition &comp, double T9, double rho) constgridfire::MultiscalePartitioningEngineViewprivate - isStale(const NetIn &netIn) overridegridfire::MultiscalePartitioningEngineViewvirtual - m_activeReactionIndicesgridfire::MultiscalePartitioningEngineViewprivate - m_activeSpeciesIndicesgridfire::MultiscalePartitioningEngineViewprivate - m_algebraic_abundancesgridfire::MultiscalePartitioningEngineViewprivate - m_algebraic_speciesgridfire::MultiscalePartitioningEngineViewprivate - m_baseEnginegridfire::MultiscalePartitioningEngineViewprivate - m_cacheStatsgridfire::MultiscalePartitioningEngineViewmutableprivate - m_dynamic_speciesgridfire::MultiscalePartitioningEngineViewprivate - m_loggergridfire::MultiscalePartitioningEngineViewprivate - m_qse_abundance_cachegridfire::MultiscalePartitioningEngineViewmutableprivate - m_qse_groupsgridfire::MultiscalePartitioningEngineViewprivate - mapNetInToMolarAbundanceVector(const NetIn &netIn) const overridegridfire::MultiscalePartitioningEngineViewvirtual - MultiscalePartitioningEngineView(GraphEngine &baseEngine)gridfire::MultiscalePartitioningEngineViewexplicit - partitionByTimescale(const fourdst::composition::Composition &comp, double T9, double rho) constgridfire::MultiscalePartitioningEngineViewprivate - partitionNetwork(const fourdst::composition::Composition &comp, double T9, double rho)gridfire::MultiscalePartitioningEngineView - partitionNetwork(const NetIn &netIn)gridfire::MultiscalePartitioningEngineView - primeEngine(const NetIn &netIn) overridegridfire::MultiscalePartitioningEngineViewvirtual - QSEPartition typedefgridfire::MultiscalePartitioningEngineViewprivate - rebuild(const fourdst::composition::Composition &comp, BuildDepthType depth)gridfire::DynamicEngineinlinevirtual - setNetworkReactions(const reaction::ReactionSet &reactions) overridegridfire::MultiscalePartitioningEngineViewvirtual - setScreeningModel(screening::ScreeningType model) overridegridfire::MultiscalePartitioningEngineViewvirtual - solveQSEAbundances(const fourdst::composition::Composition &comp, double T9, double rho)gridfire::MultiscalePartitioningEngineViewprivate - update(const NetIn &netIn) overridegridfire::MultiscalePartitioningEngineViewvirtual - validateGroupsWithFluxAnalysis(const std::vector< QSEGroup > &candidate_groups, const fourdst::composition::Composition &comp, double T9, double rho) constgridfire::MultiscalePartitioningEngineViewprivate - ~Engine()=defaultgridfire::Enginevirtual - ~EngineView()=defaultgridfire::EngineView< DynamicEngine >virtual + involvesSpecies(const fourdst::atomic::Species &species) constgridfire::MultiscalePartitioningEngineView + involvesSpeciesInDynamic(const fourdst::atomic::Species &species) constgridfire::MultiscalePartitioningEngineView + involvesSpeciesInQSE(const fourdst::atomic::Species &species) constgridfire::MultiscalePartitioningEngineView + isStale(const NetIn &netIn) overridegridfire::MultiscalePartitioningEngineViewvirtual + m_activeReactionIndicesgridfire::MultiscalePartitioningEngineViewprivate + m_activeSpeciesIndicesgridfire::MultiscalePartitioningEngineViewprivate + m_algebraic_abundancesgridfire::MultiscalePartitioningEngineViewprivate + m_algebraic_speciesgridfire::MultiscalePartitioningEngineViewprivate + m_baseEnginegridfire::MultiscalePartitioningEngineViewprivate + m_cacheStatsgridfire::MultiscalePartitioningEngineViewmutableprivate + m_dynamic_speciesgridfire::MultiscalePartitioningEngineViewprivate + m_loggergridfire::MultiscalePartitioningEngineViewprivate + m_qse_abundance_cachegridfire::MultiscalePartitioningEngineViewmutableprivate + m_qse_groupsgridfire::MultiscalePartitioningEngineViewprivate + mapNetInToMolarAbundanceVector(const NetIn &netIn) const overridegridfire::MultiscalePartitioningEngineViewvirtual + MultiscalePartitioningEngineView(DynamicEngine &baseEngine)gridfire::MultiscalePartitioningEngineViewexplicit + partitionByTimescale(const fourdst::composition::Composition &comp, double T9, double rho) constgridfire::MultiscalePartitioningEngineViewprivate + partitionNetwork(const fourdst::composition::Composition &comp, double T9, double rho)gridfire::MultiscalePartitioningEngineView + partitionNetwork(const NetIn &netIn)gridfire::MultiscalePartitioningEngineView + primeEngine(const NetIn &netIn) overridegridfire::MultiscalePartitioningEngineViewvirtual + QSEPartition typedefgridfire::MultiscalePartitioningEngineViewprivate + rebuild(const fourdst::composition::Composition &comp, BuildDepthType depth)gridfire::DynamicEngineinlinevirtual + setNetworkReactions(const reaction::ReactionSet &reactions) overridegridfire::MultiscalePartitioningEngineViewvirtual + setScreeningModel(screening::ScreeningType model) overridegridfire::MultiscalePartitioningEngineViewvirtual + solveQSEAbundances(const fourdst::composition::Composition &comp, double T9, double rho)gridfire::MultiscalePartitioningEngineViewprivate + update(const NetIn &netIn) overridegridfire::MultiscalePartitioningEngineViewvirtual + validateGroupsWithFluxAnalysis(const std::vector< QSEGroup > &candidate_groups, const fourdst::composition::Composition &comp, double T9, double rho) constgridfire::MultiscalePartitioningEngineViewprivate + ~Engine()=defaultgridfire::Enginevirtual + ~EngineView()=defaultgridfire::EngineView< DynamicEngine >virtual
    diff --git a/docs/html/classgridfire_1_1_multiscale_partitioning_engine_view.html b/docs/html/classgridfire_1_1_multiscale_partitioning_engine_view.html index 3aac513e..bbcd13d3 100644 --- a/docs/html/classgridfire_1_1_multiscale_partitioning_engine_view.html +++ b/docs/html/classgridfire_1_1_multiscale_partitioning_engine_view.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -140,9 +140,9 @@ Classes - - - + + + @@ -155,6 +155,12 @@ Public Member Functions + + + + + + @@ -176,9 +182,9 @@ Public Member Functions - - - + + + @@ -203,9 +209,9 @@ Public Member Functions - - - + + + @@ -227,9 +233,16 @@ Public Member Functions + + + + + + + + + - - @@ -277,9 +290,9 @@ Private Attributes - - - + + + @@ -332,7 +345,7 @@ Private Attributes
    // The integrator will call calculateRHSAndEnergy, etc. on the multiscaleEngine.
    auto Y_initial = multiscaleEngine.mapNetInToMolarAbundanceVector({equilibratedComp, ...});
    auto derivatives = multiscaleEngine.calculateRHSAndEnergy(Y_initial, T9, rho);
    -
    gridfire::GraphEngine
    A reaction network engine that uses a graph-based representation.
    Definition engine_graph.h:97
    +
    gridfire::GraphEngine
    A reaction network engine that uses a graph-based representation.
    Definition engine_graph.h:99
    gridfire::MultiscalePartitioningEngineView
    An engine view that partitions the reaction network into multiple groups based on timescales.
    Definition engine_multiscale.h:180
    gridfire::NetIn
    Definition network.h:51
    @@ -364,8 +377,8 @@ Private Attributes

    Constructor & Destructor Documentation

    - -

    ◆ MultiscalePartitioningEngineView()

    + +

    ◆ MultiscalePartitioningEngineView()

    @@ -376,7 +389,7 @@ Private Attributes
    - +

    Public Member Functions

     MultiscalePartitioningEngineView (GraphEngine &baseEngine)
     Constructs a MultiscalePartitioningEngineView.
     
     MultiscalePartitioningEngineView (DynamicEngine &baseEngine)
     Constructs a MultiscalePartitioningEngineView.
     
    const std::vector< fourdst::atomic::Species > & getNetworkSpecies () const override
     Gets the list of species in the network.
     
    void generateJacobianMatrix (const fourdst::composition::Composition &comp, double T9, double rho) const override
     Generates the Jacobian matrix for the current state.
     
    void generateJacobianMatrix (const fourdst::composition::Composition &comp, double T9, double rho, const std::vector< fourdst::atomic::Species > &activeSpecies) const override
     Generates the Jacobian matrix for a subset of active species.
     
    void generateJacobianMatrix (const fourdst::composition::Composition &comp, double T9, double rho, const SparsityPattern &sparsityPattern) const override
     Generates the Jacobian matrix using a sparsity pattern.
     
    double getJacobianMatrixEntry (const fourdst::atomic::Species &rowSpecies, const fourdst::atomic::Species &colSpecies) const override
     Gets an entry from the previously generated Jacobian matrix.
     
    std::expected< std::unordered_map< fourdst::atomic::Species, double >, expectations::StaleEngineError > getSpeciesTimescales (const fourdst::composition::Composition &comp, double T9, double rho) const override
     Computes timescales for all species in the network.
     
    std::expected< std::unordered_map< fourdst::atomic::Species, double >, expectations::StaleEngineError > getSpeciesDestructionTimescales (const fourdst::composition::Composition &comp, double T9, double rho) const override
     Computes destruction timescales for all species in the network.
     
    std::expected< std::unordered_map< fourdst::atomic::Species, double >, expectations::StaleEngineError > getSpeciesDestructionTimescales (const fourdst::composition::Composition &comp, double T9, double rho) const override
     Computes destruction timescales for all species in the network.
     
    fourdst::composition::Composition update (const NetIn &netIn) override
     Updates the internal state of the engine, performing partitioning and QSE equilibration.
     
    void partitionNetwork (const NetIn &netIn)
     Partitions the network based on timescales from a NetIn struct.
     
    void exportToDot (const std::string &filename, const fourdst::composition::Composition &Y, double T9, double rho) const
     Exports the network to a DOT file for visualization.
     
    void exportToDot (const std::string &filename, const fourdst::composition::Composition &comp, double T9, double rho) const
     Exports the network to a DOT file for visualization.
     
    size_t getSpeciesIndex (const fourdst::atomic::Species &species) const override
     Gets the index of a species in the full network.
     
    fourdst::composition::Composition equilibrateNetwork (const NetIn &netIn)
     Equilibrates the network using QSE from a NetIn struct.
     
    bool involvesSpecies (const fourdst::atomic::Species &species) const
     
    bool involvesSpeciesInQSE (const fourdst::atomic::Species &species) const
     
    bool involvesSpeciesInDynamic (const fourdst::atomic::Species &species) const
     
    fourdst::composition::Composition collectComposition (fourdst::composition::Composition &comp) const override
     Collect the composition from this and sub engines.
     
    - Public Member Functions inherited from gridfire::DynamicEngine
    virtual void generateJacobianMatrix (const fourdst::composition::Composition &comp, double T9, double rho, const SparsityPattern &sparsityPattern) const
     
    virtual BuildDepthType getDepth () const
     Get the depth of the network.
     
    quill::Logger * m_logger = LogManager::getInstance().getLogger("log")
     Logger instance for logging messages.
     
    GraphEngine & m_baseEngine
     The base engine to which this view delegates calculations.
     
    DynamicEngine & m_baseEngine
     The base engine to which this view delegates calculations.
     
    std::vector< QSEGroup > m_qse_groups
     The list of identified equilibrium groups.
     
    gridfire::MultiscalePartitioningEngineView::MultiscalePartitioningEngineView (GraphEngine & baseEngine)DynamicEngine & baseEngine)
    @@ -644,6 +657,48 @@ Private Attributes

    Implements gridfire::Engine.

    +
    +
    + +

    ◆ collectComposition()

    + +
    +
    + + + + + +
    + + + + + + + +
    fourdst::composition::Composition gridfire::MultiscalePartitioningEngineView::collectComposition (fourdst::composition::Composition & comp) const
    +     		+overridevirtual
    +
    + +

    Collect the composition from this and sub engines.

    +

    This method operates by injecting the current equilibrium abundances for algebraic species into the composition object so that they can be bubbled up to the caller.

    Parameters
    + + +
    compInput Composition
    +
    +
    +
    Returns
    New composition which is comp + any edits from lower levels + the equilibrium abundances of all algebraic species.
    +
    Exceptions
    + + +
    BadCollectionErrorif there is a species in the algebraic species set which does not show up in the reported composition from the base engine.:w
    +
    +
    + +

    Implements gridfire::DynamicEngine.

    +
    @@ -769,8 +824,8 @@ Private Attributes - -

    ◆ exportToDot()

    + +

    ◆ exportToDot()

    @@ -783,7 +838,7 @@ Private Attributes - const fourdst::composition::Composition & Y, + const fourdst::composition::Composition & comp, @@ -802,7 +857,7 @@ Private Attributes
    Parameters
    - +
    filenameThe name of the DOT file to create.
    YVector of current molar abundances for the full network.
    compComposition object
    T9Temperature in units of 10^9 K.
    rhoDensity in g/cm^3.
    @@ -814,7 +869,7 @@ Private Attributes
    -

    ◆ generateJacobianMatrix()

    +

    ◆ generateJacobianMatrix() [1/3]

    @@ -867,6 +922,130 @@ Private Attributes

    Implements gridfire::DynamicEngine.

    +
    +
    + +

    ◆ generateJacobianMatrix() [2/3]

    + +
    +
    + + + + + +
    + + + + + + + + + + + + + + + + + + + + + +
    void gridfire::MultiscalePartitioningEngineView::generateJacobianMatrix (const fourdst::composition::Composition & comp,
    double T9,
    double rho,
    const SparsityPattern & sparsityPattern ) const
    +     		+overridevirtual
    +
    + +

    Generates the Jacobian matrix using a sparsity pattern.

    +
    Parameters
    + + + + + +
    compThe current composition.
    T9Temperature in units of 10^9 K.
    rhoDensity in g/cm^3.
    sparsityPatternThe sparsity pattern to use for the Jacobian.
    +
    +
    +
    Purpose
    To compute the Jacobian matrix while leveraging a known sparsity pattern for efficiency. This is effectively a lower level version of the active species method.
    +
    How
    It first checks the QSE cache. On a hit, it delegates to the base engine's generateJacobianMatrix method with the provided sparsity pattern.
    +
    Precondition
    The engine must have a valid QSE cache entry for the given state.
    +
    Postcondition
    The base engine's internal Jacobian is updated according to the sparsity pattern.
    +
    Exceptions
    + + +
    exceptions::StaleEngineErrorIf the QSE cache misses.
    +
    +
    + +

    Implements gridfire::DynamicEngine.

    + +
    +
    + +

    ◆ generateJacobianMatrix() [3/3]

    + +
    +
    + + + + + +
    + + + + + + + + + + + + + + + + + + + + + +
    void gridfire::MultiscalePartitioningEngineView::generateJacobianMatrix (const fourdst::composition::Composition & comp,
    double T9,
    double rho,
    const std::vector< fourdst::atomic::Species > & activeSpecies ) const
    +     		+overridevirtual
    +
    + +

    Generates the Jacobian matrix for a subset of active species.

    +
    Parameters
    + + + + + +
    compThe current composition.
    T9Temperature in units of 10^9 K.
    rhoDensity in g/cm^3.
    activeSpeciesThe subset of species to include in the Jacobian.
    +
    +
    +
    Purpose
    To compute a reduced Jacobian matrix for implicit solvers that only consider a subset of species.
    +
    How
    Similar to the full Jacobian generation, it first checks the QSE cache. On a hit, it calls the base engine's generateJacobianMatrix with the specified active species. The returned Jacobian still reflects the full network, but only for the active species subset.
    +
    Precondition
    The engine must have a valid QSE cache entry for the given state.
    +
    Postcondition
    The base engine's internal Jacobian is updated for the active species.
    +
    Exceptions
    + + +
    exceptions::StaleEngineErrorIf the QSE cache misses.
    +
    +
    + +

    Implements gridfire::DynamicEngine.

    +
    @@ -1127,8 +1306,8 @@ Private Attributes - -

    ◆ getSpeciesDestructionTimescales()

    + +

    ◆ getSpeciesDestructionTimescales()

    @@ -1137,7 +1316,7 @@ Private Attributes - + @@ -1371,6 +1550,57 @@ Private Attributes
    Purpose
    To identify the core set of dynamic species that will not be part of any QSE group.
    How
    It calculates the geometric mean of the destruction timescales for all species in each pool and returns the index of the pool with the maximum mean timescale.
    + + + +

    ◆ involvesSpecies()

    + +
    +
    +
    std::expected< std::unordered_map< fourdst::atomic::Species, double >, expectations::StaleEngineError > gridfire::MultiscalePartitioningEngineView::getSpeciesDestructionTimescales std::expected< std::unordered_map< Species, double >, expectations::StaleEngineError > gridfire::MultiscalePartitioningEngineView::getSpeciesDestructionTimescales ( const fourdst::composition::Composition & comp,
    + + + + + + +
    bool gridfire::MultiscalePartitioningEngineView::involvesSpecies (const fourdst::atomic::Species & species) const
    +
    + +
    +
    + +

    ◆ involvesSpeciesInDynamic()

    + +
    +
    + + + + + + + +
    bool gridfire::MultiscalePartitioningEngineView::involvesSpeciesInDynamic (const fourdst::atomic::Species & species) const
    +
    + +
    +
    + +

    ◆ involvesSpeciesInQSE()

    + +
    +
    + + + + + + + +
    bool gridfire::MultiscalePartitioningEngineView::involvesSpeciesInQSE (const fourdst::atomic::Species & species) const
    +
    +
    @@ -1931,8 +2161,8 @@ Private Attributes - -

    ◆ m_baseEngine

    + +

    ◆ m_baseEngine

    @@ -1941,7 +2171,7 @@ Private Attributes - +
    GraphEngine& gridfire::MultiscalePartitioningEngineView::m_baseEngineDynamicEngine& gridfire::MultiscalePartitioningEngineView::m_baseEngine
    diff --git a/docs/html/classgridfire_1_1_multiscale_partitioning_engine_view.js b/docs/html/classgridfire_1_1_multiscale_partitioning_engine_view.js index 2ac4a90e..041da557 100644 --- a/docs/html/classgridfire_1_1_multiscale_partitioning_engine_view.js +++ b/docs/html/classgridfire_1_1_multiscale_partitioning_engine_view.js @@ -4,17 +4,20 @@ var classgridfire_1_1_multiscale_partitioning_engine_view = [ "EigenFunctor", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor" ], [ "QSEGroup", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group" ], [ "QSEPartition", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a34b5fdb2078e748edfbe6846ecadd681", null ], - [ "MultiscalePartitioningEngineView", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a0df457c0f0f6f403a295335c84fd828f", null ], + [ "MultiscalePartitioningEngineView", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a1b3720628b22f038391949fffe6fc962", null ], [ "analyzeTimescalePoolConnectivity", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a05e45017bbb772c586f483bd527004ee", null ], [ "buildConnectivityGraph", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a5d1c11f3c0883385833462dd088f6f89", null ], [ "calculateEpsDerivatives", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a99f9116d5a18afcbf0e808ef111d1be8", null ], [ "calculateMolarReactionFlow", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a87687a960f263a4e1bc035e4d0a345db", null ], [ "calculateRHSAndEnergy", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a5c1ab19bc3394a5d29241ef02073c4cb", null ], + [ "collectComposition", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a7056e235c56be39e2a672988962b3948", null ], [ "constructCandidateGroups", "classgridfire_1_1_multiscale_partitioning_engine_view.html#aaabaae8e33ca8a05a2aa1f374e792795", null ], [ "equilibrateNetwork", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a2f0c45d4e2b2f9de5d961088f3ab0a9a", null ], [ "equilibrateNetwork", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a1b17f94386882ea1524147782b7a1ddc", null ], - [ "exportToDot", "classgridfire_1_1_multiscale_partitioning_engine_view.html#adfa1e133c49c0ef78b374d37e90a3372", null ], + [ "exportToDot", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a2e3c7d6320cd0fdc51b3a40d1ec6b262", null ], [ "generateJacobianMatrix", "classgridfire_1_1_multiscale_partitioning_engine_view.html#ab9f71bc9a1c0f98ec9cc1c7da00fd975", null ], + [ "generateJacobianMatrix", "classgridfire_1_1_multiscale_partitioning_engine_view.html#ac683ef0ba25356bc587749b69a582286", null ], + [ "generateJacobianMatrix", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a31e636745b8c427cee0319e6c61039be", null ], [ "generateStoichiometryMatrix", "classgridfire_1_1_multiscale_partitioning_engine_view.html#abe76a46784b1ebc8ad67a9eec40d369a", null ], [ "getBaseEngine", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a22bd1f0e821ed415611d75bac67063d1", null ], [ "getDynamicSpecies", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a1e04e8cb8c84b1bd033ac599accf0888", null ], @@ -23,11 +26,14 @@ var classgridfire_1_1_multiscale_partitioning_engine_view = [ "getNetworkReactions", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a253e51d6dc7226a863a123683049af61", null ], [ "getNetworkSpecies", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a696f74f5135bbd62169b6577f92fee80", null ], [ "getScreeningModel", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a7bfb4e6fec2f337a1dea69e3d4f1fc82", null ], - [ "getSpeciesDestructionTimescales", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a1a14b0c7ec882b2ad2370f7aa729b9f9", null ], + [ "getSpeciesDestructionTimescales", "classgridfire_1_1_multiscale_partitioning_engine_view.html#accbbe1bd96672e74919d00387673f180", null ], [ "getSpeciesIndex", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a8db21995e6878f4043f3a5a45bf36d5e", null ], [ "getSpeciesTimescales", "classgridfire_1_1_multiscale_partitioning_engine_view.html#aea2c3d2ae6ddf77bd4a9b07b86f3306b", null ], [ "getStoichiometryMatrixEntry", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a7140384baaaa0bd05ca448a0d8fec471", null ], [ "identifyMeanSlowestPool", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a70f4a0c4123b7f78305f64eb11beeeeb", null ], + [ "involvesSpecies", "classgridfire_1_1_multiscale_partitioning_engine_view.html#adde288ec903d0cf45cfc3031e3a1fa8b", null ], + [ "involvesSpeciesInDynamic", "classgridfire_1_1_multiscale_partitioning_engine_view.html#ae4961ef6ad6db601bfaa0721ede02369", null ], + [ "involvesSpeciesInQSE", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a3e23f9e7c9e72bf1d3de15f98157afdb", null ], [ "isStale", "classgridfire_1_1_multiscale_partitioning_engine_view.html#ae7847959fc5af2b83f5446dd73567b46", null ], [ "mapNetInToMolarAbundanceVector", "classgridfire_1_1_multiscale_partitioning_engine_view.html#aada497e8df74a295fdf5df7d7cdf64e0", null ], [ "partitionByTimescale", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a7aa4eb7a0d6e6d04b3e1aa1b1fb7f3f6", null ], @@ -43,7 +49,7 @@ var classgridfire_1_1_multiscale_partitioning_engine_view = [ "m_activeSpeciesIndices", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a57d97b11e80fa78ab5f509fce1f156b8", null ], [ "m_algebraic_abundances", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a3af2b37ce21829d9554d702cad074470", null ], [ "m_algebraic_species", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a4656c05b8235dbf4ec698b03a716a8c8", null ], - [ "m_baseEngine", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a0437c51f94bf834a11adf481b2afad93", null ], + [ "m_baseEngine", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a999b68226d658c9df2f4a3b890b9e5d1", null ], [ "m_cacheStats", "classgridfire_1_1_multiscale_partitioning_engine_view.html#aa81057b96cf46986151a5e8ef99a017a", null ], [ "m_dynamic_species", "classgridfire_1_1_multiscale_partitioning_engine_view.html#aec6126b5c4a397d090790d7b75f9f70f", null ], [ "m_logger", "classgridfire_1_1_multiscale_partitioning_engine_view.html#a7d357c775dcbb253a4001d172805380a", null ], diff --git a/docs/html/classgridfire_1_1_network-members.html b/docs/html/classgridfire_1_1_network-members.html index 0af330d7..670bbe1b 100644 --- a/docs/html/classgridfire_1_1_network-members.html +++ b/docs/html/classgridfire_1_1_network-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/classgridfire_1_1_network.html b/docs/html/classgridfire_1_1_network.html index fd4ef7fc..8dd742d5 100644 --- a/docs/html/classgridfire_1_1_network.html +++ b/docs/html/classgridfire_1_1_network.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/classgridfire_1_1_network_priming_engine_view-members.html b/docs/html/classgridfire_1_1_network_priming_engine_view-members.html index f81f8df2..8855af43 100644 --- a/docs/html/classgridfire_1_1_network_priming_engine_view-members.html +++ b/docs/html/classgridfire_1_1_network_priming_engine_view-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -109,12 +109,14 @@ $(function(){initNavTree('classgridfire_1_1_network_priming_engine_view.html','' calculateMolarReactionFlow(const reaction::Reaction &reaction, const fourdst::composition::Composition &comp, double T9, double rho) const overridegridfire::DefinedEngineViewvirtual calculateRHSAndEnergy(const fourdst::composition::Composition &comp, double T9, double rho) const overridegridfire::DefinedEngineViewvirtual collect(const std::vector< std::string > &peNames)gridfire::DefinedEngineViewprivate - constructPrimingReactionSet(const fourdst::atomic::Species &primingSpecies, const DynamicEngine &baseEngine) constgridfire::NetworkPrimingEngineViewprivate - constructReactionIndexMap() constgridfire::DefinedEngineViewprivate - constructSpeciesIndexMap() constgridfire::DefinedEngineViewprivate - DefinedEngineView(const std::vector< std::string > &peNames, DynamicEngine &baseEngine)gridfire::DefinedEngineView - generateJacobianMatrix(const fourdst::composition::Composition &comp, const double T9, const double rho) const overridegridfire::DefinedEngineViewvirtual - gridfire::DynamicEngine::generateJacobianMatrix(const fourdst::composition::Composition &comp, double T9, double rho, const SparsityPattern &sparsityPattern) constgridfire::DynamicEngineinlinevirtual + collectComposition(fourdst::composition::Composition &comp) const overridegridfire::DefinedEngineViewvirtual + constructPrimingReactionSet(const fourdst::atomic::Species &primingSpecies, const GraphEngine &baseEngine) constgridfire::NetworkPrimingEngineViewprivate + constructReactionIndexMap() constgridfire::DefinedEngineViewprivate + constructSpeciesIndexMap() constgridfire::DefinedEngineViewprivate + DefinedEngineView(const std::vector< std::string > &peNames, GraphEngine &baseEngine)gridfire::DefinedEngineView + generateJacobianMatrix(const fourdst::composition::Composition &comp, double T9, double rho) const overridegridfire::DefinedEngineViewvirtual + generateJacobianMatrix(const fourdst::composition::Composition &comp, double T9, double rho, const std::vector< fourdst::atomic::Species > &activeSpecies) const overridegridfire::DefinedEngineViewvirtual + generateJacobianMatrix(const fourdst::composition::Composition &comp, double T9, double rho, const SparsityPattern &sparsityPattern) const overridegridfire::DefinedEngineViewvirtual generateStoichiometryMatrix() overridegridfire::DefinedEngineViewvirtual getBaseEngine() const overridegridfire::DefinedEngineViewvirtual getDepth() constgridfire::DynamicEngineinlinevirtual @@ -122,34 +124,35 @@ $(function(){initNavTree('classgridfire_1_1_network_priming_engine_view.html','' getNetworkReactions() const overridegridfire::DefinedEngineViewvirtual getNetworkSpecies() const overridegridfire::DefinedEngineViewvirtual getScreeningModel() const overridegridfire::DefinedEngineViewvirtual - getSpeciesDestructionTimescales(const fourdst::composition::Composition &comp, double T9, double rho) const overridegridfire::DefinedEngineViewvirtual + getSpeciesDestructionTimescales(const fourdst::composition::Composition &comp, double T9, double rho) const overridegridfire::DefinedEngineViewvirtual getSpeciesIndex(const fourdst::atomic::Species &species) const overridegridfire::DefinedEngineViewvirtual getSpeciesTimescales(const fourdst::composition::Composition &comp, double T9, double rho) const overridegridfire::DefinedEngineViewvirtual getStoichiometryMatrixEntry(const fourdst::atomic::Species &species, const reaction::Reaction &reaction) const overridegridfire::DefinedEngineViewvirtual isStale(const NetIn &netIn) overridegridfire::DefinedEngineViewvirtual m_activeReactionsgridfire::DefinedEngineViewprivate - m_activeSpeciesgridfire::DefinedEngineViewprivate - m_baseEnginegridfire::DefinedEngineViewprotected - m_isStalegridfire::DefinedEngineViewprotected - m_loggergridfire::NetworkPrimingEngineViewprivate - m_primingSpeciesgridfire::NetworkPrimingEngineViewprivate - m_reactionIndexMapgridfire::DefinedEngineViewprivate - m_speciesIndexMapgridfire::DefinedEngineViewprivate - mapFullToView(const std::vector< double > &full) constgridfire::DefinedEngineViewprivate - mapNetInToMolarAbundanceVector(const NetIn &netIn) const overridegridfire::DefinedEngineViewvirtual - mapViewToFull(const std::vector< double > &defined) constgridfire::DefinedEngineViewprivate - mapViewToFullReactionIndex(size_t definedReactionIndex) constgridfire::DefinedEngineViewprivate - mapViewToFullSpeciesIndex(size_t definedSpeciesIndex) constgridfire::DefinedEngineViewprivate - NetworkPrimingEngineView(const std::string &primingSymbol, DynamicEngine &baseEngine)gridfire::NetworkPrimingEngineView - NetworkPrimingEngineView(const fourdst::atomic::Species &primingSpecies, DynamicEngine &baseEngine)gridfire::NetworkPrimingEngineView - primeEngine(const NetIn &netIn) overridegridfire::DefinedEngineViewvirtual - rebuild(const fourdst::composition::Composition &comp, BuildDepthType depth)gridfire::DynamicEngineinlinevirtual - setNetworkReactions(const reaction::ReactionSet &reactions) overridegridfire::DefinedEngineViewvirtual - setScreeningModel(screening::ScreeningType model) overridegridfire::DefinedEngineViewvirtual - update(const NetIn &netIn) overridegridfire::DefinedEngineViewvirtual - validateNetworkState() constgridfire::DefinedEngineViewprivate - ~Engine()=defaultgridfire::Enginevirtual - ~EngineView()=defaultgridfire::EngineView< DynamicEngine >virtual + m_activeSpeciesgridfire::DefinedEngineViewprivate + m_activeSpeciesVectorCachegridfire::DefinedEngineViewmutableprivate + m_baseEnginegridfire::DefinedEngineViewprotected + m_isStalegridfire::DefinedEngineViewprotected + m_loggergridfire::NetworkPrimingEngineViewprivate + m_primingSpeciesgridfire::NetworkPrimingEngineViewprivate + m_reactionIndexMapgridfire::DefinedEngineViewprivate + m_speciesIndexMapgridfire::DefinedEngineViewprivate + mapFullToView(const std::vector< double > &full) constgridfire::DefinedEngineViewprivate + mapNetInToMolarAbundanceVector(const NetIn &netIn) const overridegridfire::DefinedEngineViewvirtual + mapViewToFull(const std::vector< double > &defined) constgridfire::DefinedEngineViewprivate + mapViewToFullReactionIndex(size_t definedReactionIndex) constgridfire::DefinedEngineViewprivate + mapViewToFullSpeciesIndex(size_t definedSpeciesIndex) constgridfire::DefinedEngineViewprivate + NetworkPrimingEngineView(const std::string &primingSymbol, GraphEngine &baseEngine)gridfire::NetworkPrimingEngineView + NetworkPrimingEngineView(const fourdst::atomic::Species &primingSpecies, GraphEngine &baseEngine)gridfire::NetworkPrimingEngineView + primeEngine(const NetIn &netIn) overridegridfire::DefinedEngineViewvirtual + rebuild(const fourdst::composition::Composition &comp, BuildDepthType depth)gridfire::DynamicEngineinlinevirtual + setNetworkReactions(const reaction::ReactionSet &reactions) overridegridfire::DefinedEngineViewvirtual + setScreeningModel(screening::ScreeningType model) overridegridfire::DefinedEngineViewvirtual + update(const NetIn &netIn) overridegridfire::DefinedEngineViewvirtual + validateNetworkState() constgridfire::DefinedEngineViewprivate + ~Engine()=defaultgridfire::Enginevirtual + ~EngineView()=defaultgridfire::EngineView< DynamicEngine >virtual
    diff --git a/docs/html/classgridfire_1_1_network_priming_engine_view.html b/docs/html/classgridfire_1_1_network_priming_engine_view.html index 944adacf..6f9c8e6e 100644 --- a/docs/html/classgridfire_1_1_network_priming_engine_view.html +++ b/docs/html/classgridfire_1_1_network_priming_engine_view.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -127,17 +127,17 @@ Inheritance diagram for gridfire::NetworkPrimingEngineView:
    - - - - - - + + + + + + - - + + - + @@ -148,9 +148,15 @@ Public Member Functions - - - + + + + + + + + + @@ -171,8 +177,8 @@ Public Member Functions - - + + @@ -193,9 +199,10 @@ Public Member Functions + + + - - @@ -213,13 +220,13 @@ Public Member Functions

    Public Member Functions

     NetworkPrimingEngineView (const std::string &primingSymbol, DynamicEngine &baseEngine)
     Constructs the view by looking up the priming species by symbol.
     
     NetworkPrimingEngineView (const fourdst::atomic::Species &primingSpecies, DynamicEngine &baseEngine)
     Constructs the view using an existing Species object.
     
     NetworkPrimingEngineView (const std::string &primingSymbol, GraphEngine &baseEngine)
     Constructs the view by looking up the priming species by symbol.
     
     NetworkPrimingEngineView (const fourdst::atomic::Species &primingSpecies, GraphEngine &baseEngine)
     Constructs the view using an existing Species object.
     
    - Public Member Functions inherited from gridfire::DefinedEngineView
     DefinedEngineView (const std::vector< std::string > &peNames, DynamicEngine &baseEngine)
     
     DefinedEngineView (const std::vector< std::string > &peNames, GraphEngine &baseEngine)
     
    const DynamicEngine & getBaseEngine () const override
     Access the underlying engine instance.
     Get the base engine associated with this defined engine view.
     
    const std::vector< fourdst::atomic::Species > & getNetworkSpecies () const override
     Gets the list of active species in the network defined by the file.
    EnergyDerivatives calculateEpsDerivatives (const fourdst::composition::Composition &comp, double T9, double rho) const override
     Calculate the derivatives of the energy generation rate with respect to T and rho.
     
    void generateJacobianMatrix (const fourdst::composition::Composition &comp, const double T9, const double rho) const override
     Generates the Jacobian matrix for the active species.
     
    void generateJacobianMatrix (const fourdst::composition::Composition &comp, double T9, double rho) const override
     Generates the Jacobian matrix for the active species.
     
    void generateJacobianMatrix (const fourdst::composition::Composition &comp, double T9, double rho, const std::vector< fourdst::atomic::Species > &activeSpecies) const override
     Generates the Jacobian matrix for the active species.
     
    void generateJacobianMatrix (const fourdst::composition::Composition &comp, double T9, double rho, const SparsityPattern &sparsityPattern) const override
     Generates the Jacobian matrix for a given sparsity pattern.
     
    double getJacobianMatrixEntry (const fourdst::atomic::Species &rowSpecies, const fourdst::atomic::Species &colSpecies) const override
     Gets an entry from the Jacobian matrix for the active species.
     
    std::expected< std::unordered_map< fourdst::atomic::Species, double >, expectations::StaleEngineError > getSpeciesTimescales (const fourdst::composition::Composition &comp, double T9, double rho) const override
     Computes timescales for all active species in the network.
     
    std::expected< std::unordered_map< fourdst::atomic::Species, double >, expectations::StaleEngineError > getSpeciesDestructionTimescales (const fourdst::composition::Composition &comp, double T9, double rho) const override
     
    std::expected< std::unordered_map< fourdst::atomic::Species, double >, expectations::StaleEngineError > getSpeciesDestructionTimescales (const fourdst::composition::Composition &comp, double T9, double rho) const override
     
    fourdst::composition::Composition update (const NetIn &netIn) override
     Updates the engine view if it is marked as stale.
     
    PrimingReport primeEngine (const NetIn &netIn) override
     Prime the engine with initial conditions.
     
    fourdst::composition::Composition collectComposition (fourdst::composition::Composition &comp) const override
     Recursively collect composition from current engine and any sub engines if they exist.
     
    - Public Member Functions inherited from gridfire::DynamicEngine
    virtual void generateJacobianMatrix (const fourdst::composition::Composition &comp, double T9, double rho, const SparsityPattern &sparsityPattern) const
     
    virtual BuildDepthType getDepth () const
     Get the depth of the network.
     
    - - - + + +

    Private Member Functions

    std::vector< std::string > constructPrimingReactionSet (const fourdst::atomic::Species &primingSpecies, const DynamicEngine &baseEngine) const
     Constructs the set of reaction names that involve the priming species.
     
    std::vector< std::string > constructPrimingReactionSet (const fourdst::atomic::Species &primingSpecies, const GraphEngine &baseEngine) const
     Constructs the set of reaction names that involve the priming species.
     
    - + @@ -230,8 +237,8 @@ Additional Inherited Members - - + +

    Private Attributes

    quill::Logger * m_logger = fourdst::logging::LogManager::getInstance().getLogger("log")
    quill::Logger * m_logger = LogManager::getInstance().getLogger("log")
     
    fourdst::atomic::Species m_primingSpecies
     The priming species, if specified.
    - Protected Attributes inherited from gridfire::DefinedEngineView
    bool m_isStale = true
     
    DynamicEngine & m_baseEngine
     
    GraphEngine & m_baseEngine
     

    Detailed Description

    Provides a view of a DynamicEngine filtered to reactions involving a specified priming species.

    @@ -239,8 +246,8 @@ Additional Inherited Members

    See implementation in engine_priming.cpp for details on reaction set construction.

    Note
    Throws std::runtime_error if no priming reactions are found for the species.

    Constructor & Destructor Documentation

    - -

    ◆ NetworkPrimingEngineView() [1/2]

    + +

    ◆ NetworkPrimingEngineView() [1/2]

    @@ -253,7 +260,7 @@ Additional Inherited Members - DynamicEngine & baseEngine ) + GraphEngine & baseEngine )
    @@ -278,8 +285,8 @@ Additional Inherited Members
    - -

    ◆ NetworkPrimingEngineView() [2/2]

    + +

    ◆ NetworkPrimingEngineView() [2/2]

    @@ -292,7 +299,7 @@ Additional Inherited Members - DynamicEngine & baseEngine ) + GraphEngine & baseEngine )
    @@ -317,8 +324,8 @@ Additional Inherited Members

    Member Function Documentation

    - -

    ◆ constructPrimingReactionSet()

    + +

    ◆ constructPrimingReactionSet()

    @@ -334,7 +341,7 @@ Additional Inherited Members - const DynamicEngine & baseEngine ) const + const GraphEngine & baseEngine ) const @@ -375,7 +382,7 @@ Additional Inherited Members - +
    quill::Logger* gridfire::NetworkPrimingEngineView::m_logger = fourdst::logging::LogManager::getInstance().getLogger("log")quill::Logger* gridfire::NetworkPrimingEngineView::m_logger = LogManager::getInstance().getLogger("log")
    diff --git a/docs/html/classgridfire_1_1_network_priming_engine_view.js b/docs/html/classgridfire_1_1_network_priming_engine_view.js index a44e73fd..b8aeae09 100644 --- a/docs/html/classgridfire_1_1_network_priming_engine_view.js +++ b/docs/html/classgridfire_1_1_network_priming_engine_view.js @@ -1,8 +1,8 @@ var classgridfire_1_1_network_priming_engine_view = [ - [ "NetworkPrimingEngineView", "classgridfire_1_1_network_priming_engine_view.html#ad13ec8d4974421c72cffd88558d71177", null ], - [ "NetworkPrimingEngineView", "classgridfire_1_1_network_priming_engine_view.html#a96751b66dd11f1155d0c488f39f9f6a6", null ], - [ "constructPrimingReactionSet", "classgridfire_1_1_network_priming_engine_view.html#a91f60d8a6bd92dc5d5f6fcda8e89408f", null ], + [ "NetworkPrimingEngineView", "classgridfire_1_1_network_priming_engine_view.html#a0dee05df5ac4047ac0456006a4be4927", null ], + [ "NetworkPrimingEngineView", "classgridfire_1_1_network_priming_engine_view.html#af101fd7cf7237c208611e047396ce8d4", null ], + [ "constructPrimingReactionSet", "classgridfire_1_1_network_priming_engine_view.html#a43b669d725df289366ff21e9698d645a", null ], [ "m_logger", "classgridfire_1_1_network_priming_engine_view.html#a1eed366e916c4e9b7847ae52836f3c7d", null ], [ "m_primingSpecies", "classgridfire_1_1_network_priming_engine_view.html#aeb8f25d97e2459037cc999b974823cf5", null ] ]; \ No newline at end of file diff --git a/docs/html/classgridfire_1_1_reaction-members.html b/docs/html/classgridfire_1_1_reaction-members.html index a8fbed0c..fea4bfee 100644 --- a/docs/html/classgridfire_1_1_reaction-members.html +++ b/docs/html/classgridfire_1_1_reaction-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/classgridfire_1_1_reaction.html b/docs/html/classgridfire_1_1_reaction.html index d9511a4a..151824da 100644 --- a/docs/html/classgridfire_1_1_reaction.html +++ b/docs/html/classgridfire_1_1_reaction.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -208,7 +208,7 @@ Friends
    "H_1_H_1_to_H_2", "p(p,g)d", 1, {H_1, H_1}, {H_2}, 5.493, "st08", rate_coeffs
    );
    double rate = p_gamma_d.calculate_rate(0.1); // T9 = 0.1
    -
    gridfire::reaction::Reaction
    Represents a single nuclear reaction from a specific data source.
    Definition reaction.h:78
    +
    gridfire::reaction::Reaction
    Represents a single nuclear reaction from a specific data source.
    Definition reaction.h:92
    gridfire::reaction::Reaction::calculate_rate
    virtual double calculate_rate(double T9, double rho, double Ye, double mue, const std::vector< double > &Y, const std::unordered_map< size_t, fourdst::atomic::Species > &index_to_species_map) const =0
    Compute the temperature- and composition-dependent reaction rate.

    Constructor & Destructor Documentation

    diff --git a/docs/html/classgridfire_1_1_reaction_set-members.html b/docs/html/classgridfire_1_1_reaction_set-members.html index 313940f2..1056f4d4 100644 --- a/docs/html/classgridfire_1_1_reaction_set-members.html +++ b/docs/html/classgridfire_1_1_reaction_set-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -117,24 +117,25 @@ $(function(){initNavTree('classgridfire_1_1_reaction_set.html',''); initResizabl contains_species(const fourdst::atomic::Species &species) constgridfire::ReactionSet end()gridfire::ReactionSetinline end() constgridfire::ReactionSetinline - getReactionSetSpecies() constgridfire::ReactionSet - hash(uint64_t seed) constgridfire::ReactionSet - m_idgridfire::ReactionSetprivate - m_loggergridfire::ReactionSetprivate - m_reactionNameMapgridfire::ReactionSetprivate - m_reactionsgridfire::ReactionSetprivate - operator!=(const ReactionSet &other) constgridfire::ReactionSet - operator<<(std::ostream &os, const ReactionSet &rs)gridfire::ReactionSetfriend - operator=(const ReactionSet &other)gridfire::ReactionSet - operator==(const ReactionSet &other) constgridfire::ReactionSet - operator[](size_t index) constgridfire::ReactionSet - operator[](const std::string_view &id) constgridfire::ReactionSet - ReactionSet(std::vector< std::unique_ptr< Reaction > > &&reactions)gridfire::ReactionSetexplicit - ReactionSet(const std::vector< Reaction * > &reactions)gridfire::ReactionSetexplicit - ReactionSet()gridfire::ReactionSet - ReactionSet(const ReactionSet &other)gridfire::ReactionSet - remove_reaction(const Reaction &reaction)gridfire::ReactionSet - size() constgridfire::ReactionSetinline + extend(const ReactionSet &other)gridfire::ReactionSet + getReactionSetSpecies() constgridfire::ReactionSet + hash(uint64_t seed) constgridfire::ReactionSet + m_idgridfire::ReactionSetprivate + m_loggergridfire::ReactionSetprivate + m_reactionNameMapgridfire::ReactionSetprivate + m_reactionsgridfire::ReactionSetprivate + operator!=(const ReactionSet &other) constgridfire::ReactionSet + operator<<(std::ostream &os, const ReactionSet &rs)gridfire::ReactionSetfriend + operator=(const ReactionSet &other)gridfire::ReactionSet + operator==(const ReactionSet &other) constgridfire::ReactionSet + operator[](size_t index) constgridfire::ReactionSet + operator[](const std::string_view &id) constgridfire::ReactionSet + ReactionSet(std::vector< std::unique_ptr< Reaction > > &&reactions)gridfire::ReactionSetexplicit + ReactionSet(const std::vector< Reaction * > &reactions)gridfire::ReactionSetexplicit + ReactionSet()gridfire::ReactionSet + ReactionSet(const ReactionSet &other)gridfire::ReactionSet + remove_reaction(const Reaction &reaction)gridfire::ReactionSet + size() constgridfire::ReactionSetinline
    diff --git a/docs/html/classgridfire_1_1_reaction_set.html b/docs/html/classgridfire_1_1_reaction_set.html index 1b300db2..db77769e 100644 --- a/docs/html/classgridfire_1_1_reaction_set.html +++ b/docs/html/classgridfire_1_1_reaction_set.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -130,6 +130,8 @@ Public Member Functions   void add_reaction (std::unique_ptr< Reaction > &&reaction)   +void extend (const ReactionSet &other) +  void remove_reaction (const Reaction &reaction)  Removes a reaction from the set.
      @@ -639,6 +641,23 @@ Friends
    +
    +
    + +

    ◆ extend()

    + +
    +
    + + + + + + + +
    void gridfire::reaction::ReactionSet::extend (const ReactionSet & other)
    +
    +
    diff --git a/docs/html/classgridfire_1_1_reaction_set.js b/docs/html/classgridfire_1_1_reaction_set.js index be40af71..90500237 100644 --- a/docs/html/classgridfire_1_1_reaction_set.js +++ b/docs/html/classgridfire_1_1_reaction_set.js @@ -16,6 +16,7 @@ var classgridfire_1_1_reaction_set = [ "contains_species", "classgridfire_1_1_reaction_set.html#a5b872a8519740a6d06cfaed03784826a", null ], [ "end", "classgridfire_1_1_reaction_set.html#abae9fbc4b4306479a6cd3173ac628987", null ], [ "end", "classgridfire_1_1_reaction_set.html#a436f9c4b8f8a4e115b19728d57d8e105", null ], + [ "extend", "classgridfire_1_1_reaction_set.html#a6a4836776f5dd00158d2336e5bcc3222", null ], [ "getReactionSetSpecies", "classgridfire_1_1_reaction_set.html#a133ad8cca6a75d31ef8efe67801aef1b", null ], [ "hash", "classgridfire_1_1_reaction_set.html#ad28907fc08de978461d68cc5b77a3a99", null ], [ "operator!=", "classgridfire_1_1_reaction_set.html#a529189f464aebc6b5ac5c717f70e14b8", null ], diff --git a/docs/html/classgridfire_1_1approx8_1_1_approx8_network-members.html b/docs/html/classgridfire_1_1approx8_1_1_approx8_network-members.html index cd4fa782..4d1e4ca7 100644 --- a/docs/html/classgridfire_1_1approx8_1_1_approx8_network-members.html +++ b/docs/html/classgridfire_1_1approx8_1_1_approx8_network-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/classgridfire_1_1approx8_1_1_approx8_network.html b/docs/html/classgridfire_1_1approx8_1_1_approx8_network.html index 1078208c..3e7679a5 100644 --- a/docs/html/classgridfire_1_1approx8_1_1_approx8_network.html +++ b/docs/html/classgridfire_1_1approx8_1_1_approx8_network.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/classgridfire_1_1exceptions_1_1_bad_collection_error-members.html b/docs/html/classgridfire_1_1exceptions_1_1_bad_collection_error-members.html new file mode 100644 index 00000000..e5b55d84 --- /dev/null +++ b/docs/html/classgridfire_1_1exceptions_1_1_bad_collection_error-members.html @@ -0,0 +1,120 @@ + + + + + + + +GridFire: Member List + + + + + + + + + + + + + + + + + +
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    gridfire::exceptions::BadCollectionError Member List
    +
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    + +

    This is the complete list of members for gridfire::exceptions::BadCollectionError, including all inherited members.

    + + + + +
    BadCollectionError(std::string message)gridfire::exceptions::BadCollectionErrorinlineexplicit
    m_messagegridfire::exceptions::BadCollectionErrorprivate
    what() const noexcept overridegridfire::exceptions::BadCollectionErrorinline
    +
    + + + + diff --git a/docs/html/classgridfire_1_1exceptions_1_1_bad_collection_error.html b/docs/html/classgridfire_1_1exceptions_1_1_bad_collection_error.html new file mode 100644 index 00000000..17476714 --- /dev/null +++ b/docs/html/classgridfire_1_1exceptions_1_1_bad_collection_error.html @@ -0,0 +1,221 @@ + + + + + + + +GridFire: gridfire::exceptions::BadCollectionError Class Reference + + + + + + + + + + + + + + + + + +
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    +Public Member Functions | +Private Attributes | +List of all members
    +
    gridfire::exceptions::BadCollectionError Class Referencefinal
    +
    +
    + +

    #include <error_engine.h>

    +
    +Inheritance diagram for gridfire::exceptions::BadCollectionError:
    +
    +
    + + +gridfire::exceptions::EngineError + +
    + + + + + + +

    +Public Member Functions

     BadCollectionError (std::string message)
     
    const char * what () const noexcept override
     
    + + + +

    +Private Attributes

    std::string m_message
     
    +

    Constructor & Destructor Documentation

    + +

    ◆ BadCollectionError()

    + +
    +
    + + + + + +
    + + + + + + + +
    gridfire::exceptions::BadCollectionError::BadCollectionError (std::string message)
    +     		+inlineexplicit
    +
    + +
    +
    +

    Member Function Documentation

    + +

    ◆ what()

    + +
    +
    + + + + + +
    + + + + + + + +
    const char * gridfire::exceptions::BadCollectionError::what () const
    +     		+inlinenodiscardoverridenoexcept
    +
    + +
    +
    +

    Member Data Documentation

    + +

    ◆ m_message

    + +
    +
    + + + + + +
    + + + + +
    std::string gridfire::exceptions::BadCollectionError::m_message
    +     		+private
    +
    + +
    +
    +
    The documentation for this class was generated from the following file: +
    +
    + + + + diff --git a/docs/html/classgridfire_1_1exceptions_1_1_bad_collection_error.js b/docs/html/classgridfire_1_1exceptions_1_1_bad_collection_error.js new file mode 100644 index 00000000..639cafac --- /dev/null +++ b/docs/html/classgridfire_1_1exceptions_1_1_bad_collection_error.js @@ -0,0 +1,6 @@ +var classgridfire_1_1exceptions_1_1_bad_collection_error = +[ + [ "BadCollectionError", "classgridfire_1_1exceptions_1_1_bad_collection_error.html#a0d897039a648727ab4a8b54e50f10ce8", null ], + [ "what", "classgridfire_1_1exceptions_1_1_bad_collection_error.html#a9f970ded49f6a7de57bea42d322b9821", null ], + [ "m_message", "classgridfire_1_1exceptions_1_1_bad_collection_error.html#a1ff822ab63e39fdc2bd3f71ac6e04fcb", null ] +]; \ No newline at end of file diff --git a/docs/html/classgridfire_1_1exceptions_1_1_bad_collection_error.png b/docs/html/classgridfire_1_1exceptions_1_1_bad_collection_error.png new file mode 100644 index 00000000..b5d051e5 Binary files /dev/null and b/docs/html/classgridfire_1_1exceptions_1_1_bad_collection_error.png differ diff --git a/docs/html/classgridfire_1_1exceptions_1_1_engine_error.html b/docs/html/classgridfire_1_1exceptions_1_1_engine_error.html index 62383acb..0fd38627 100644 --- a/docs/html/classgridfire_1_1exceptions_1_1_engine_error.html +++ b/docs/html/classgridfire_1_1exceptions_1_1_engine_error.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -110,11 +110,16 @@ Inheritance diagram for gridfire::exceptions::EngineError:
    -gridfire::exceptions::FailedToPartitionEngineError -gridfire::exceptions::NetworkResizedError -gridfire::exceptions::StaleEngineError -gridfire::exceptions::StaleEngineTrigger -gridfire::exceptions::UnableToSetNetworkReactionsError +gridfire::exceptions::BadCollectionError +gridfire::exceptions::FailedToPartitionEngineError +gridfire::exceptions::JacobianError +gridfire::exceptions::NetworkResizedError +gridfire::exceptions::StaleEngineError +gridfire::exceptions::StaleEngineTrigger +gridfire::exceptions::UnableToSetNetworkReactionsError +gridfire::exceptions::StaleJacobianError +gridfire::exceptions::UninitializedJacobianError +gridfire::exceptions::UnknownJacobianError
    The documentation for this class was generated from the following file:
      diff --git a/docs/html/classgridfire_1_1exceptions_1_1_engine_error.png b/docs/html/classgridfire_1_1exceptions_1_1_engine_error.png index 0edeafe1..14cc8dfd 100644 Binary files a/docs/html/classgridfire_1_1exceptions_1_1_engine_error.png and b/docs/html/classgridfire_1_1exceptions_1_1_engine_error.png differ diff --git a/docs/html/classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error-members.html b/docs/html/classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error-members.html index 3f35cbc2..c4ae2a06 100644 --- a/docs/html/classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error-members.html +++ b/docs/html/classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error-members.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      @@ -105,7 +105,7 @@ $(function(){initNavTree('classgridfire_1_1exceptions_1_1_failed_to_partition_en

      This is the complete list of members for gridfire::exceptions::FailedToPartitionEngineError, including all inherited members.

      - +
      FailedToPartitionEngineError(const std::string &message)gridfire::exceptions::FailedToPartitionEngineErrorinlineexplicit
      FailedToPartitionEngineError(std::string message)gridfire::exceptions::FailedToPartitionEngineErrorinlineexplicit
      m_messagegridfire::exceptions::FailedToPartitionEngineErrorprivate
      what() const noexcept overridegridfire::exceptions::FailedToPartitionEngineErrorinline
      diff --git a/docs/html/classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html b/docs/html/classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html index ec164739..ede12452 100644 --- a/docs/html/classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html +++ b/docs/html/classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      @@ -120,8 +120,8 @@ Inheritance diagram for gridfire::exceptions::FailedToPartitionEngineError:

      Public Member Functions

      - FailedToPartitionEngineError (const std::string &message) -  + FailedToPartitionEngineError (std::string message) +  const char * what () const noexcept override   @@ -131,8 +131,8 @@ Private Attributes
       

      Constructor & Destructor Documentation

      - -

      ◆ FailedToPartitionEngineError()

      + +

      ◆ FailedToPartitionEngineError()

      @@ -143,7 +143,7 @@ Private Attributes gridfire::exceptions::FailedToPartitionEngineError::FailedToPartitionEngineError ( - const std::string & message) + std::string message) @@ -175,7 +175,7 @@ Private Attributes -inlineoverridenoexcept +inlinenodiscardoverridenoexcept
      diff --git a/docs/html/classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.js b/docs/html/classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.js index 044e1fee..a15d0887 100644 --- a/docs/html/classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.js +++ b/docs/html/classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.js @@ -1,6 +1,6 @@ var classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error = [ - [ "FailedToPartitionEngineError", "classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#a9b9e8752798876d34a444f61fc2f509a", null ], + [ "FailedToPartitionEngineError", "classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#a24372546a7d22fdca16a268909c64bd7", null ], [ "what", "classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#afe87ef508f5b20ca99ec70510747caff", null ], [ "m_message", "classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html#a77c9a660a2748c2e3a1c7e94edad1cf0", null ] ]; \ No newline at end of file diff --git a/docs/html/classgridfire_1_1exceptions_1_1_hashing_error-members.html b/docs/html/classgridfire_1_1exceptions_1_1_hashing_error-members.html new file mode 100644 index 00000000..49e5c944 --- /dev/null +++ b/docs/html/classgridfire_1_1exceptions_1_1_hashing_error-members.html @@ -0,0 +1,121 @@ + + + + + + + +GridFire: Member List + + + + + + + + + + + + + + + + + +
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      gridfire::exceptions::HashingError Member List
      +
      +
      + +

      This is the complete list of members for gridfire::exceptions::HashingError, including all inherited members.

      + + + + + +
      HashingError()=defaultgridfire::exceptions::HashingErrorexplicit
      HashingError(std::string message)gridfire::exceptions::HashingErrorinlineexplicit
      m_messagegridfire::exceptions::HashingErrorprivate
      what() const noexcept overridegridfire::exceptions::HashingErrorinline
      +
      + + + + diff --git a/docs/html/classgridfire_1_1exceptions_1_1_hashing_error.html b/docs/html/classgridfire_1_1exceptions_1_1_hashing_error.html new file mode 100644 index 00000000..bbc21311 --- /dev/null +++ b/docs/html/classgridfire_1_1exceptions_1_1_hashing_error.html @@ -0,0 +1,248 @@ + + + + + + + +GridFire: gridfire::exceptions::HashingError Class Reference + + + + + + + + + + + + + + + + + +
      +
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      GridFire v0.7.0-alpha +
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      +Public Member Functions | +Private Attributes | +List of all members
      +
      gridfire::exceptions::HashingError Class Referencefinal
      +
      +
      + +

      #include <error_utils.h>

      +
      +Inheritance diagram for gridfire::exceptions::HashingError:
      +
      +
      + + +gridfire::exceptions::UtilityError + +
      + + + + + + + + +

      +Public Member Functions

       HashingError ()=default
       
       HashingError (std::string message)
       
      const char * what () const noexcept override
       
      + + + +

      +Private Attributes

      std::string m_message
       
      +

      Constructor & Destructor Documentation

      + +

      ◆ HashingError() [1/2]

      + +
      +
      + + + + + +
      + + + + + + + +
      gridfire::exceptions::HashingError::HashingError ()
      +       		+explicitdefault
      +
      + +
      +
      + +

      ◆ HashingError() [2/2]

      + +
      +
      + + + + + +
      + + + + + + + +
      gridfire::exceptions::HashingError::HashingError (std::string message)
      +       		+inlineexplicit
      +
      + +
      +
      +

      Member Function Documentation

      + +

      ◆ what()

      + +
      +
      + + + + + +
      + + + + + + + +
      const char * gridfire::exceptions::HashingError::what () const
      +       		+inlinenodiscardoverridenoexcept
      +
      + +
      +
      +

      Member Data Documentation

      + +

      ◆ m_message

      + +
      +
      + + + + + +
      + + + + +
      std::string gridfire::exceptions::HashingError::m_message
      +       		+private
      +
      + +
      +
      +
      The documentation for this class was generated from the following file: +
      +
      + + + + diff --git a/docs/html/classgridfire_1_1exceptions_1_1_hashing_error.js b/docs/html/classgridfire_1_1exceptions_1_1_hashing_error.js new file mode 100644 index 00000000..e7810f3c --- /dev/null +++ b/docs/html/classgridfire_1_1exceptions_1_1_hashing_error.js @@ -0,0 +1,7 @@ +var classgridfire_1_1exceptions_1_1_hashing_error = +[ + [ "HashingError", "classgridfire_1_1exceptions_1_1_hashing_error.html#a42fd09bb0ce168f979d146368831142d", null ], + [ "HashingError", "classgridfire_1_1exceptions_1_1_hashing_error.html#afc587989d7504f3737aba7f092678c5b", null ], + [ "what", "classgridfire_1_1exceptions_1_1_hashing_error.html#a2ee9e7ea4af6a60ab1e69b1692a2b618", null ], + [ "m_message", "classgridfire_1_1exceptions_1_1_hashing_error.html#a50aeb5acdd6b046de5f7bb7d6c26dcb0", null ] +]; \ No newline at end of file diff --git a/docs/html/classgridfire_1_1exceptions_1_1_hashing_error.png b/docs/html/classgridfire_1_1exceptions_1_1_hashing_error.png new file mode 100644 index 00000000..0b59d37b Binary files /dev/null and b/docs/html/classgridfire_1_1exceptions_1_1_hashing_error.png differ diff --git a/docs/html/classgridfire_1_1exceptions_1_1_jacobian_error.html b/docs/html/classgridfire_1_1exceptions_1_1_jacobian_error.html new file mode 100644 index 00000000..b29d5b95 --- /dev/null +++ b/docs/html/classgridfire_1_1exceptions_1_1_jacobian_error.html @@ -0,0 +1,132 @@ + + + + + + + +GridFire: gridfire::exceptions::JacobianError Class Reference + + + + + + + + + + + + + + + + + +
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      gridfire::exceptions::JacobianError Class Reference
      +
      +
      + +

      #include <error_engine.h>

      +
      +Inheritance diagram for gridfire::exceptions::JacobianError:
      +
      +
      + + +gridfire::exceptions::EngineError +gridfire::exceptions::StaleJacobianError +gridfire::exceptions::UninitializedJacobianError +gridfire::exceptions::UnknownJacobianError + +
      +
      The documentation for this class was generated from the following file: +
      +
      + + + + diff --git a/docs/html/classgridfire_1_1exceptions_1_1_jacobian_error.png b/docs/html/classgridfire_1_1exceptions_1_1_jacobian_error.png new file mode 100644 index 00000000..5c2c5a2f Binary files /dev/null and b/docs/html/classgridfire_1_1exceptions_1_1_jacobian_error.png differ diff --git a/docs/html/classgridfire_1_1exceptions_1_1_network_resized_error-members.html b/docs/html/classgridfire_1_1exceptions_1_1_network_resized_error-members.html index e83aa29f..79529b98 100644 --- a/docs/html/classgridfire_1_1exceptions_1_1_network_resized_error-members.html +++ b/docs/html/classgridfire_1_1exceptions_1_1_network_resized_error-members.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      @@ -106,7 +106,7 @@ $(function(){initNavTree('classgridfire_1_1exceptions_1_1_network_resized_error.

      This is the complete list of members for gridfire::exceptions::NetworkResizedError, including all inherited members.

      - +
      m_messagegridfire::exceptions::NetworkResizedErrorprivate
      NetworkResizedError(const std::string &message)gridfire::exceptions::NetworkResizedErrorinlineexplicit
      NetworkResizedError(std::string message)gridfire::exceptions::NetworkResizedErrorinlineexplicit
      what() const noexcept overridegridfire::exceptions::NetworkResizedErrorinline
      diff --git a/docs/html/classgridfire_1_1exceptions_1_1_network_resized_error.html b/docs/html/classgridfire_1_1exceptions_1_1_network_resized_error.html index 8480aa76..e8ce5364 100644 --- a/docs/html/classgridfire_1_1exceptions_1_1_network_resized_error.html +++ b/docs/html/classgridfire_1_1exceptions_1_1_network_resized_error.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      @@ -120,8 +120,8 @@ Inheritance diagram for gridfire::exceptions::NetworkResizedError:
      - - + +

      Public Member Functions

       NetworkResizedError (const std::string &message)
       
       NetworkResizedError (std::string message)
       
      const char * what () const noexcept override
       
      @@ -131,8 +131,8 @@ Private Attributes
       

      Constructor & Destructor Documentation

      - -

      ◆ NetworkResizedError()

      + +

      ◆ NetworkResizedError()

      @@ -143,7 +143,7 @@ Private Attributes gridfire::exceptions::NetworkResizedError::NetworkResizedError ( - const std::string & message) + std::string message) @@ -175,7 +175,7 @@ Private Attributes -inlineoverridenoexcept +inlinenodiscardoverridenoexcept
      diff --git a/docs/html/classgridfire_1_1exceptions_1_1_network_resized_error.js b/docs/html/classgridfire_1_1exceptions_1_1_network_resized_error.js index aaffa8dc..bcc4a02e 100644 --- a/docs/html/classgridfire_1_1exceptions_1_1_network_resized_error.js +++ b/docs/html/classgridfire_1_1exceptions_1_1_network_resized_error.js @@ -1,6 +1,6 @@ var classgridfire_1_1exceptions_1_1_network_resized_error = [ - [ "NetworkResizedError", "classgridfire_1_1exceptions_1_1_network_resized_error.html#a80c0adb088e8083309591d24051b056b", null ], + [ "NetworkResizedError", "classgridfire_1_1exceptions_1_1_network_resized_error.html#a1386b2b78ae7760b40cfc5ddefa0ce3e", null ], [ "what", "classgridfire_1_1exceptions_1_1_network_resized_error.html#a80f09d037fff3c55a9b937b37d101cc1", null ], [ "m_message", "classgridfire_1_1exceptions_1_1_network_resized_error.html#a581527fc03fdd84a8309c147259ec09d", null ] ]; \ No newline at end of file diff --git a/docs/html/classgridfire_1_1exceptions_1_1_stale_engine_error-members.html b/docs/html/classgridfire_1_1exceptions_1_1_stale_engine_error-members.html index ca1e38d5..96d7719e 100644 --- a/docs/html/classgridfire_1_1exceptions_1_1_stale_engine_error-members.html +++ b/docs/html/classgridfire_1_1exceptions_1_1_stale_engine_error-members.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      @@ -106,7 +106,7 @@ $(function(){initNavTree('classgridfire_1_1exceptions_1_1_stale_engine_error.htm

      This is the complete list of members for gridfire::exceptions::StaleEngineError, including all inherited members.

      - +
      m_messagegridfire::exceptions::StaleEngineErrorprivate
      StaleEngineError(const std::string &message)gridfire::exceptions::StaleEngineErrorinlineexplicit
      StaleEngineError(std::string message)gridfire::exceptions::StaleEngineErrorinlineexplicit
      what() const noexcept overridegridfire::exceptions::StaleEngineErrorinline
      diff --git a/docs/html/classgridfire_1_1exceptions_1_1_stale_engine_error.html b/docs/html/classgridfire_1_1exceptions_1_1_stale_engine_error.html index 0bcd85ab..7985e420 100644 --- a/docs/html/classgridfire_1_1exceptions_1_1_stale_engine_error.html +++ b/docs/html/classgridfire_1_1exceptions_1_1_stale_engine_error.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      @@ -120,8 +120,8 @@ Inheritance diagram for gridfire::exceptions::StaleEngineError:
      - - + +

      Public Member Functions

       StaleEngineError (const std::string &message)
       
       StaleEngineError (std::string message)
       
      const char * what () const noexcept override
       
      @@ -131,8 +131,8 @@ Private Attributes
       

      Constructor & Destructor Documentation

      - -

      ◆ StaleEngineError()

      + +

      ◆ StaleEngineError()

      @@ -143,7 +143,7 @@ Private Attributes gridfire::exceptions::StaleEngineError::StaleEngineError ( - const std::string & message) + std::string message) @@ -175,7 +175,7 @@ Private Attributes -inlineoverridenoexcept +inlinenodiscardoverridenoexcept
      diff --git a/docs/html/classgridfire_1_1exceptions_1_1_stale_engine_error.js b/docs/html/classgridfire_1_1exceptions_1_1_stale_engine_error.js index f6d28c52..92092ab2 100644 --- a/docs/html/classgridfire_1_1exceptions_1_1_stale_engine_error.js +++ b/docs/html/classgridfire_1_1exceptions_1_1_stale_engine_error.js @@ -1,6 +1,6 @@ var classgridfire_1_1exceptions_1_1_stale_engine_error = [ - [ "StaleEngineError", "classgridfire_1_1exceptions_1_1_stale_engine_error.html#a6672e4c3f42260bba25d78e14ebd5a50", null ], + [ "StaleEngineError", "classgridfire_1_1exceptions_1_1_stale_engine_error.html#ade628b2919f3a4c7a8fda2c654029872", null ], [ "what", "classgridfire_1_1exceptions_1_1_stale_engine_error.html#a15c1b625e8e58a457e7bc5dbb464eff4", null ], [ "m_message", "classgridfire_1_1exceptions_1_1_stale_engine_error.html#a4eb62e3842302997e44e05d0770d77bb", null ] ]; \ No newline at end of file diff --git a/docs/html/classgridfire_1_1exceptions_1_1_stale_engine_trigger-members.html b/docs/html/classgridfire_1_1exceptions_1_1_stale_engine_trigger-members.html index f81b2888..7b25701b 100644 --- a/docs/html/classgridfire_1_1exceptions_1_1_stale_engine_trigger-members.html +++ b/docs/html/classgridfire_1_1exceptions_1_1_stale_engine_trigger-members.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      @@ -111,7 +111,7 @@ $(function(){initNavTree('classgridfire_1_1exceptions_1_1_stale_engine_trigger.h getState() constgridfire::exceptions::StaleEngineTriggerinline m_stategridfire::exceptions::StaleEngineTriggerprivate numSpecies() constgridfire::exceptions::StaleEngineTriggerinline - StaleEngineTrigger(const state &s)gridfire::exceptions::StaleEngineTriggerinlineexplicit + StaleEngineTrigger(state s)gridfire::exceptions::StaleEngineTriggerinlineexplicit temperature() constgridfire::exceptions::StaleEngineTriggerinline totalSteps() constgridfire::exceptions::StaleEngineTriggerinline what() const noexcept overridegridfire::exceptions::StaleEngineTriggerinline diff --git a/docs/html/classgridfire_1_1exceptions_1_1_stale_engine_trigger.html b/docs/html/classgridfire_1_1exceptions_1_1_stale_engine_trigger.html index 1b0e8164..521d431c 100644 --- a/docs/html/classgridfire_1_1exceptions_1_1_stale_engine_trigger.html +++ b/docs/html/classgridfire_1_1exceptions_1_1_stale_engine_trigger.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      @@ -126,8 +126,8 @@ Classes - - + + @@ -151,8 +151,8 @@ Private Attributes

      Public Member Functions

       StaleEngineTrigger (const state &s)
       
       StaleEngineTrigger (state s)
       
      const char * what () const noexcept override
       
      state getState () const
       

      Constructor & Destructor Documentation

      - -

      ◆ StaleEngineTrigger()

      + +

      ◆ StaleEngineTrigger()

      @@ -163,7 +163,7 @@ Private Attributes gridfire::exceptions::StaleEngineTrigger::StaleEngineTrigger ( - const state & s) + state s) @@ -195,7 +195,7 @@ Private Attributes -inline +inlinenodiscard
      @@ -220,7 +220,7 @@ Private Attributes -inline +inlinenodiscard
      @@ -245,7 +245,7 @@ Private Attributes -inline +inlinenodiscard
      @@ -270,7 +270,7 @@ Private Attributes -inline +inlinenodiscard
      @@ -295,7 +295,7 @@ Private Attributes -inline +inlinenodiscard
      @@ -320,7 +320,7 @@ Private Attributes -inline +inlinenodiscard
      @@ -345,7 +345,7 @@ Private Attributes -inline +inlinenodiscard
      @@ -370,7 +370,7 @@ Private Attributes -inlineoverridenoexcept +inlinenodiscardoverridenoexcept
      diff --git a/docs/html/classgridfire_1_1exceptions_1_1_stale_engine_trigger.js b/docs/html/classgridfire_1_1exceptions_1_1_stale_engine_trigger.js index f32eea4b..0a49b178 100644 --- a/docs/html/classgridfire_1_1exceptions_1_1_stale_engine_trigger.js +++ b/docs/html/classgridfire_1_1exceptions_1_1_stale_engine_trigger.js @@ -1,7 +1,7 @@ var classgridfire_1_1exceptions_1_1_stale_engine_trigger = [ [ "state", "structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html", "structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state" ], - [ "StaleEngineTrigger", "classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#afb50f1694a806e8bcaf99111d99aeb5d", null ], + [ "StaleEngineTrigger", "classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a3c7689e6e1e7269bae7275b099b2f387", null ], [ "density", "classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#ae8156ed7e659cb629da24a5b6734e2dc", null ], [ "energy", "classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#aeebfb529118f8dfcaf1422ae1768f2bf", null ], [ "getMolarAbundance", "classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a3183a0030b14253eb49d8304fb6665ea", null ], diff --git a/docs/html/classgridfire_1_1exceptions_1_1_stale_jacobian_error-members.html b/docs/html/classgridfire_1_1exceptions_1_1_stale_jacobian_error-members.html new file mode 100644 index 00000000..0b67c6d5 --- /dev/null +++ b/docs/html/classgridfire_1_1exceptions_1_1_stale_jacobian_error-members.html @@ -0,0 +1,120 @@ + + + + + + + +GridFire: Member List + + + + + + + + + + + + + + + + + +
      +
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      gridfire::exceptions::StaleJacobianError Member List
      +
      +
      + +

      This is the complete list of members for gridfire::exceptions::StaleJacobianError, including all inherited members.

      + + + + +
      m_messagegridfire::exceptions::StaleJacobianErrorprivate
      StaleJacobianError(std::string message)gridfire::exceptions::StaleJacobianErrorinlineexplicit
      what() const noexcept overridegridfire::exceptions::StaleJacobianErrorinline
      +
      + + + + diff --git a/docs/html/classgridfire_1_1exceptions_1_1_stale_jacobian_error.html b/docs/html/classgridfire_1_1exceptions_1_1_stale_jacobian_error.html new file mode 100644 index 00000000..ab13543a --- /dev/null +++ b/docs/html/classgridfire_1_1exceptions_1_1_stale_jacobian_error.html @@ -0,0 +1,222 @@ + + + + + + + +GridFire: gridfire::exceptions::StaleJacobianError Class Reference + + + + + + + + + + + + + + + + + +
      +
      + + + + + + +
      +
      GridFire v0.7.0-alpha +
      +
      General Purpose Nuclear Network
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      +Public Member Functions | +Private Attributes | +List of all members
      +
      gridfire::exceptions::StaleJacobianError Class Referencefinal
      +
      +
      + +

      #include <error_engine.h>

      +
      +Inheritance diagram for gridfire::exceptions::StaleJacobianError:
      +
      +
      + + +gridfire::exceptions::JacobianError +gridfire::exceptions::EngineError + +
      + + + + + + +

      +Public Member Functions

       StaleJacobianError (std::string message)
       
      const char * what () const noexcept override
       
      + + + +

      +Private Attributes

      std::string m_message
       
      +

      Constructor & Destructor Documentation

      + +

      ◆ StaleJacobianError()

      + +
      +
      + + + + + +
      + + + + + + + +
      gridfire::exceptions::StaleJacobianError::StaleJacobianError (std::string message)
      +       		+inlineexplicit
      +
      + +
      +
      +

      Member Function Documentation

      + +

      ◆ what()

      + +
      +
      + + + + + +
      + + + + + + + +
      const char * gridfire::exceptions::StaleJacobianError::what () const
      +       		+inlinenodiscardoverridenoexcept
      +
      + +
      +
      +

      Member Data Documentation

      + +

      ◆ m_message

      + +
      +
      + + + + + +
      + + + + +
      std::string gridfire::exceptions::StaleJacobianError::m_message
      +       		+private
      +
      + +
      +
      +
      The documentation for this class was generated from the following file: +
      +
      + + + + diff --git a/docs/html/classgridfire_1_1exceptions_1_1_stale_jacobian_error.js b/docs/html/classgridfire_1_1exceptions_1_1_stale_jacobian_error.js new file mode 100644 index 00000000..46c633ed --- /dev/null +++ b/docs/html/classgridfire_1_1exceptions_1_1_stale_jacobian_error.js @@ -0,0 +1,6 @@ +var classgridfire_1_1exceptions_1_1_stale_jacobian_error = +[ + [ "StaleJacobianError", "classgridfire_1_1exceptions_1_1_stale_jacobian_error.html#a0a1f6e905239147ba53b374e62bef505", null ], + [ "what", "classgridfire_1_1exceptions_1_1_stale_jacobian_error.html#ae7e9c94d3fd05f5954077b3178600857", null ], + [ "m_message", "classgridfire_1_1exceptions_1_1_stale_jacobian_error.html#a8cbd2bcb916369751f2154f8c7f58974", null ] +]; \ No newline at end of file diff --git a/docs/html/classgridfire_1_1exceptions_1_1_stale_jacobian_error.png b/docs/html/classgridfire_1_1exceptions_1_1_stale_jacobian_error.png new file mode 100644 index 00000000..a8f0d7b6 Binary files /dev/null and b/docs/html/classgridfire_1_1exceptions_1_1_stale_jacobian_error.png differ diff --git a/docs/html/classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error-members.html b/docs/html/classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error-members.html index ad830425..1a6b9204 100644 --- a/docs/html/classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error-members.html +++ b/docs/html/classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error-members.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      @@ -106,7 +106,7 @@ $(function(){initNavTree('classgridfire_1_1exceptions_1_1_unable_to_set_network_

      This is the complete list of members for gridfire::exceptions::UnableToSetNetworkReactionsError, including all inherited members.

      - +
      m_messagegridfire::exceptions::UnableToSetNetworkReactionsErrorprivate
      UnableToSetNetworkReactionsError(const std::string &message)gridfire::exceptions::UnableToSetNetworkReactionsErrorinlineexplicit
      UnableToSetNetworkReactionsError(std::string message)gridfire::exceptions::UnableToSetNetworkReactionsErrorinlineexplicit
      what() const noexcept overridegridfire::exceptions::UnableToSetNetworkReactionsErrorinline
      diff --git a/docs/html/classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html b/docs/html/classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html index b7a95245..cbf46623 100644 --- a/docs/html/classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html +++ b/docs/html/classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      @@ -120,8 +120,8 @@ Inheritance diagram for gridfire::exceptions::UnableToSetNetworkReactionsError:< - - + +

      Public Member Functions

       UnableToSetNetworkReactionsError (const std::string &message)
       
       UnableToSetNetworkReactionsError (std::string message)
       
      const char * what () const noexcept override
       
      @@ -131,8 +131,8 @@ Private Attributes
       

      Constructor & Destructor Documentation

      - -

      ◆ UnableToSetNetworkReactionsError()

      + +

      ◆ UnableToSetNetworkReactionsError()

      @@ -143,7 +143,7 @@ Private Attributes gridfire::exceptions::UnableToSetNetworkReactionsError::UnableToSetNetworkReactionsError ( - const std::string & message) + std::string message) @@ -175,7 +175,7 @@ Private Attributes -inlineoverridenoexcept +inlinenodiscardoverridenoexcept
      diff --git a/docs/html/classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.js b/docs/html/classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.js index 17bd857b..fdcd4f91 100644 --- a/docs/html/classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.js +++ b/docs/html/classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.js @@ -1,6 +1,6 @@ var classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error = [ - [ "UnableToSetNetworkReactionsError", "classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#acb3183c3dea755a8a26b00d638183c30", null ], + [ "UnableToSetNetworkReactionsError", "classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#a4f8e4f72384210c8fb73e104c718b1a6", null ], [ "what", "classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#a1619c3c96b1d89ce387705bbc1f36c69", null ], [ "m_message", "classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#af7ed18507088efc5587298a7e263f047", null ] ]; \ No newline at end of file diff --git a/docs/html/classgridfire_1_1exceptions_1_1_uninitialized_jacobian_error-members.html b/docs/html/classgridfire_1_1exceptions_1_1_uninitialized_jacobian_error-members.html new file mode 100644 index 00000000..f4c7215f --- /dev/null +++ b/docs/html/classgridfire_1_1exceptions_1_1_uninitialized_jacobian_error-members.html @@ -0,0 +1,120 @@ + + + + + + + +GridFire: Member List + + + + + + + + + + + + + + + + + +
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      gridfire::exceptions::UninitializedJacobianError Member List
      +
      +
      + +

      This is the complete list of members for gridfire::exceptions::UninitializedJacobianError, including all inherited members.

      + + + + +
      m_messagegridfire::exceptions::UninitializedJacobianErrorprivate
      UninitializedJacobianError(std::string message)gridfire::exceptions::UninitializedJacobianErrorinlineexplicit
      what() const noexcept overridegridfire::exceptions::UninitializedJacobianErrorinline
      +
      + + + + diff --git a/docs/html/classgridfire_1_1exceptions_1_1_uninitialized_jacobian_error.html b/docs/html/classgridfire_1_1exceptions_1_1_uninitialized_jacobian_error.html new file mode 100644 index 00000000..c95b0ba0 --- /dev/null +++ b/docs/html/classgridfire_1_1exceptions_1_1_uninitialized_jacobian_error.html @@ -0,0 +1,222 @@ + + + + + + + +GridFire: gridfire::exceptions::UninitializedJacobianError Class Reference + + + + + + + + + + + + + + + + + +
      +
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      +
      GridFire v0.7.0-alpha +
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      +Public Member Functions | +Private Attributes | +List of all members
      +
      gridfire::exceptions::UninitializedJacobianError Class Referencefinal
      +
      +
      + +

      #include <error_engine.h>

      +
      +Inheritance diagram for gridfire::exceptions::UninitializedJacobianError:
      +
      +
      + + +gridfire::exceptions::JacobianError +gridfire::exceptions::EngineError + +
      + + + + + + +

      +Public Member Functions

       UninitializedJacobianError (std::string message)
       
      const char * what () const noexcept override
       
      + + + +

      +Private Attributes

      std::string m_message
       
      +

      Constructor & Destructor Documentation

      + +

      ◆ UninitializedJacobianError()

      + +
      +
      + + + + + +
      + + + + + + + +
      gridfire::exceptions::UninitializedJacobianError::UninitializedJacobianError (std::string message)
      +       		+inlineexplicit
      +
      + +
      +
      +

      Member Function Documentation

      + +

      ◆ what()

      + +
      +
      + + + + + +
      + + + + + + + +
      const char * gridfire::exceptions::UninitializedJacobianError::what () const
      +       		+inlinenodiscardoverridenoexcept
      +
      + +
      +
      +

      Member Data Documentation

      + +

      ◆ m_message

      + +
      +
      + + + + + +
      + + + + +
      std::string gridfire::exceptions::UninitializedJacobianError::m_message
      +       		+private
      +
      + +
      +
      +
      The documentation for this class was generated from the following file: +
      +
      + + + + diff --git a/docs/html/classgridfire_1_1exceptions_1_1_uninitialized_jacobian_error.js b/docs/html/classgridfire_1_1exceptions_1_1_uninitialized_jacobian_error.js new file mode 100644 index 00000000..b9b5fa8f --- /dev/null +++ b/docs/html/classgridfire_1_1exceptions_1_1_uninitialized_jacobian_error.js @@ -0,0 +1,6 @@ +var classgridfire_1_1exceptions_1_1_uninitialized_jacobian_error = +[ + [ "UninitializedJacobianError", "classgridfire_1_1exceptions_1_1_uninitialized_jacobian_error.html#a54f2823488af43dfc942f6d7e860cf50", null ], + [ "what", "classgridfire_1_1exceptions_1_1_uninitialized_jacobian_error.html#abba5f6e2487bbc79b54dd578128dd8ef", null ], + [ "m_message", "classgridfire_1_1exceptions_1_1_uninitialized_jacobian_error.html#aa9abe57b96872bf7b5025eabc7656a02", null ] +]; \ No newline at end of file diff --git a/docs/html/classgridfire_1_1exceptions_1_1_uninitialized_jacobian_error.png b/docs/html/classgridfire_1_1exceptions_1_1_uninitialized_jacobian_error.png new file mode 100644 index 00000000..06570cc5 Binary files /dev/null and b/docs/html/classgridfire_1_1exceptions_1_1_uninitialized_jacobian_error.png differ diff --git a/docs/html/classgridfire_1_1exceptions_1_1_unknown_jacobian_error-members.html b/docs/html/classgridfire_1_1exceptions_1_1_unknown_jacobian_error-members.html new file mode 100644 index 00000000..9f5cfb19 --- /dev/null +++ b/docs/html/classgridfire_1_1exceptions_1_1_unknown_jacobian_error-members.html @@ -0,0 +1,120 @@ + + + + + + + +GridFire: Member List + + + + + + + + + + + + + + + + + +
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      gridfire::exceptions::UnknownJacobianError Member List
      +
      +
      + +

      This is the complete list of members for gridfire::exceptions::UnknownJacobianError, including all inherited members.

      + + + + +
      m_messagegridfire::exceptions::UnknownJacobianErrorprivate
      UnknownJacobianError(std::string message)gridfire::exceptions::UnknownJacobianErrorinlineexplicit
      what() const noexcept overridegridfire::exceptions::UnknownJacobianErrorinline
      +
      + + + + diff --git a/docs/html/classgridfire_1_1exceptions_1_1_unknown_jacobian_error.html b/docs/html/classgridfire_1_1exceptions_1_1_unknown_jacobian_error.html new file mode 100644 index 00000000..b576aa06 --- /dev/null +++ b/docs/html/classgridfire_1_1exceptions_1_1_unknown_jacobian_error.html @@ -0,0 +1,222 @@ + + + + + + + +GridFire: gridfire::exceptions::UnknownJacobianError Class Reference + + + + + + + + + + + + + + + + + +
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      +Public Member Functions | +Private Attributes | +List of all members
      +
      gridfire::exceptions::UnknownJacobianError Class Referencefinal
      +
      +
      + +

      #include <error_engine.h>

      +
      +Inheritance diagram for gridfire::exceptions::UnknownJacobianError:
      +
      +
      + + +gridfire::exceptions::JacobianError +gridfire::exceptions::EngineError + +
      + + + + + + +

      +Public Member Functions

       UnknownJacobianError (std::string message)
       
      const char * what () const noexcept override
       
      + + + +

      +Private Attributes

      std::string m_message
       
      +

      Constructor & Destructor Documentation

      + +

      ◆ UnknownJacobianError()

      + +
      +
      + + + + + +
      + + + + + + + +
      gridfire::exceptions::UnknownJacobianError::UnknownJacobianError (std::string message)
      +       		+inlineexplicit
      +
      + +
      +
      +

      Member Function Documentation

      + +

      ◆ what()

      + +
      +
      + + + + + +
      + + + + + + + +
      const char * gridfire::exceptions::UnknownJacobianError::what () const
      +       		+inlinenodiscardoverridenoexcept
      +
      + +
      +
      +

      Member Data Documentation

      + +

      ◆ m_message

      + +
      +
      + + + + + +
      + + + + +
      std::string gridfire::exceptions::UnknownJacobianError::m_message
      +       		+private
      +
      + +
      +
      +
      The documentation for this class was generated from the following file: +
      +
      + + + + diff --git a/docs/html/classgridfire_1_1exceptions_1_1_unknown_jacobian_error.js b/docs/html/classgridfire_1_1exceptions_1_1_unknown_jacobian_error.js new file mode 100644 index 00000000..71810f58 --- /dev/null +++ b/docs/html/classgridfire_1_1exceptions_1_1_unknown_jacobian_error.js @@ -0,0 +1,6 @@ +var classgridfire_1_1exceptions_1_1_unknown_jacobian_error = +[ + [ "UnknownJacobianError", "classgridfire_1_1exceptions_1_1_unknown_jacobian_error.html#a16f040eb003b7aca7f09aff7fd2636d5", null ], + [ "what", "classgridfire_1_1exceptions_1_1_unknown_jacobian_error.html#add5f3ec1fcd440b39dda6f37b92f8f29", null ], + [ "m_message", "classgridfire_1_1exceptions_1_1_unknown_jacobian_error.html#a0b75cbbf9890d97a2e49b5c0728020cd", null ] +]; \ No newline at end of file diff --git a/docs/html/classgridfire_1_1exceptions_1_1_unknown_jacobian_error.png b/docs/html/classgridfire_1_1exceptions_1_1_unknown_jacobian_error.png new file mode 100644 index 00000000..51d5672a Binary files /dev/null and b/docs/html/classgridfire_1_1exceptions_1_1_unknown_jacobian_error.png differ diff --git a/docs/html/classgridfire_1_1exceptions_1_1_utility_error.html b/docs/html/classgridfire_1_1exceptions_1_1_utility_error.html new file mode 100644 index 00000000..4ea2d86b --- /dev/null +++ b/docs/html/classgridfire_1_1exceptions_1_1_utility_error.html @@ -0,0 +1,129 @@ + + + + + + + +GridFire: gridfire::exceptions::UtilityError Class Reference + + + + + + + + + + + + + + + + + +
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      gridfire::exceptions::UtilityError Class Reference
      +
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      + +

      #include <error_utils.h>

      +
      +Inheritance diagram for gridfire::exceptions::UtilityError:
      +
      +
      + + +gridfire::exceptions::HashingError + +
      +
      The documentation for this class was generated from the following file: +
      +
      + + + + diff --git a/docs/html/classgridfire_1_1exceptions_1_1_utility_error.png b/docs/html/classgridfire_1_1exceptions_1_1_utility_error.png new file mode 100644 index 00000000..57feef2e Binary files /dev/null and b/docs/html/classgridfire_1_1exceptions_1_1_utility_error.png differ diff --git a/docs/html/classgridfire_1_1io_1_1_m_e_s_a_network_file_parser-members.html b/docs/html/classgridfire_1_1io_1_1_m_e_s_a_network_file_parser-members.html index 5dbc23ca..50b4913a 100644 --- a/docs/html/classgridfire_1_1io_1_1_m_e_s_a_network_file_parser-members.html +++ b/docs/html/classgridfire_1_1io_1_1_m_e_s_a_network_file_parser-members.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      diff --git a/docs/html/classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html b/docs/html/classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html index bdbc45d1..6415cdf1 100644 --- a/docs/html/classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html +++ b/docs/html/classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      diff --git a/docs/html/classgridfire_1_1io_1_1_network_file_parser-members.html b/docs/html/classgridfire_1_1io_1_1_network_file_parser-members.html index 9f7fdec6..2d918f2a 100644 --- a/docs/html/classgridfire_1_1io_1_1_network_file_parser-members.html +++ b/docs/html/classgridfire_1_1io_1_1_network_file_parser-members.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      diff --git a/docs/html/classgridfire_1_1io_1_1_network_file_parser.html b/docs/html/classgridfire_1_1io_1_1_network_file_parser.html index 0de812d3..c3d3a0c0 100644 --- a/docs/html/classgridfire_1_1io_1_1_network_file_parser.html +++ b/docs/html/classgridfire_1_1io_1_1_network_file_parser.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      diff --git a/docs/html/classgridfire_1_1io_1_1_simple_reaction_list_file_parser-members.html b/docs/html/classgridfire_1_1io_1_1_simple_reaction_list_file_parser-members.html index f82c4a0c..f84ff016 100644 --- a/docs/html/classgridfire_1_1io_1_1_simple_reaction_list_file_parser-members.html +++ b/docs/html/classgridfire_1_1io_1_1_simple_reaction_list_file_parser-members.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      diff --git a/docs/html/classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html b/docs/html/classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html index 8492e3f6..f7902975 100644 --- a/docs/html/classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html +++ b/docs/html/classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      diff --git a/docs/html/classgridfire_1_1partition_1_1_composite_partition_function-members.html b/docs/html/classgridfire_1_1partition_1_1_composite_partition_function-members.html index 1e1ae91b..71e9cbf8 100644 --- a/docs/html/classgridfire_1_1partition_1_1_composite_partition_function-members.html +++ b/docs/html/classgridfire_1_1partition_1_1_composite_partition_function-members.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      @@ -112,10 +112,11 @@ $(function(){initNavTree('classgridfire_1_1partition_1_1_composite_partition_fun evaluateDerivative(int z, int a, double T9) const overridegridfire::partition::CompositePartitionFunctionvirtual m_loggergridfire::partition::CompositePartitionFunctionprivate m_partitionFunctionsgridfire::partition::CompositePartitionFunctionprivate - selectPartitionFunction(const BasePartitionType type) constgridfire::partition::CompositePartitionFunctionprivate - supports(int z, int a) const overridegridfire::partition::CompositePartitionFunctionvirtual - type() const overridegridfire::partition::CompositePartitionFunctionvirtual - ~PartitionFunction()=defaultgridfire::partition::PartitionFunctionvirtual + m_supportCachegridfire::partition::CompositePartitionFunctionmutableprivate + selectPartitionFunction(BasePartitionType type) constgridfire::partition::CompositePartitionFunctionprivate + supports(int z, int a) const overridegridfire::partition::CompositePartitionFunctionvirtual + type() const overridegridfire::partition::CompositePartitionFunctionvirtual + ~PartitionFunction()=defaultgridfire::partition::PartitionFunctionvirtual
      diff --git a/docs/html/classgridfire_1_1partition_1_1_composite_partition_function.html b/docs/html/classgridfire_1_1partition_1_1_composite_partition_function.html index 0ca9a294..ad707c6f 100644 --- a/docs/html/classgridfire_1_1partition_1_1_composite_partition_function.html +++ b/docs/html/classgridfire_1_1partition_1_1_composite_partition_function.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      @@ -145,8 +145,8 @@ Public Member Functions - - + +

      Private Member Functions

      std::unique_ptr< PartitionFunction > selectPartitionFunction (const BasePartitionType type) const
       
      std::unique_ptr< PartitionFunction > selectPartitionFunction (BasePartitionType type) const
       
      @@ -155,6 +155,9 @@ Private Attributes + + +

      Private Attributes

      std::vector< std::unique_ptr< PartitionFunction > > m_partitionFunctions
       Set of partition functions to use in the composite partition function.
       
      std::unordered_map< uint_fast32_t, const PartitionFunction & > m_supportCache
       Cache mapping isotope keys to supporting partition functions for fast lookup.
       

      Detailed Description

      Combines multiple PartitionFunction instances into a single composite strategy.

      @@ -354,8 +357,8 @@ Private Attributes
      - -

      ◆ selectPartitionFunction()

      + +

      ◆ selectPartitionFunction()

      @@ -366,7 +369,7 @@ Private Attributes std::unique_ptr< PartitionFunction > gridfire::partition::CompositePartitionFunction::selectPartitionFunction ( - const BasePartitionType type) + BasePartitionType type) const @@ -505,6 +508,30 @@ Private Attributes

      Set of partition functions to use in the composite partition function.

      +
      +
      + +

      ◆ m_supportCache

      + +
      +
      + + + + + +
      + + + + +
      std::unordered_map<uint_fast32_t, const PartitionFunction&> gridfire::partition::CompositePartitionFunction::m_supportCache
      +       		+mutableprivate
      +
      + +

      Cache mapping isotope keys to supporting partition functions for fast lookup.

      +
      The documentation for this class was generated from the following files:
        diff --git a/docs/html/classgridfire_1_1partition_1_1_composite_partition_function.js b/docs/html/classgridfire_1_1partition_1_1_composite_partition_function.js index 13135a5e..13d231e9 100644 --- a/docs/html/classgridfire_1_1partition_1_1_composite_partition_function.js +++ b/docs/html/classgridfire_1_1partition_1_1_composite_partition_function.js @@ -5,9 +5,10 @@ var classgridfire_1_1partition_1_1_composite_partition_function = [ "clone", "classgridfire_1_1partition_1_1_composite_partition_function.html#a7b000d55c7d1f489e54a57f7f4e3808a", null ], [ "evaluate", "classgridfire_1_1partition_1_1_composite_partition_function.html#a8d6d278fcb5b8478b0e27535f877ee2b", null ], [ "evaluateDerivative", "classgridfire_1_1partition_1_1_composite_partition_function.html#ac8900afaa5edd24fcb8eaf19e7379183", null ], - [ "selectPartitionFunction", "classgridfire_1_1partition_1_1_composite_partition_function.html#a44325e313db7f8f901c0dd5d84d4845b", null ], + [ "selectPartitionFunction", "classgridfire_1_1partition_1_1_composite_partition_function.html#a32f397abf9e9ace9f0c721e4e14eb60b", null ], [ "supports", "classgridfire_1_1partition_1_1_composite_partition_function.html#ae8908a78f087ea516cdd5a4cdd449a9c", null ], [ "type", "classgridfire_1_1partition_1_1_composite_partition_function.html#a66560e21a4a7b08e8da135ce8279ed88", null ], [ "m_logger", "classgridfire_1_1partition_1_1_composite_partition_function.html#ae0fc1c6abdc86009ba0fc6c9f270ff8b", null ], - [ "m_partitionFunctions", "classgridfire_1_1partition_1_1_composite_partition_function.html#a85aaac230e9de2fd50d4d453f6d5def8", null ] + [ "m_partitionFunctions", "classgridfire_1_1partition_1_1_composite_partition_function.html#a85aaac230e9de2fd50d4d453f6d5def8", null ], + [ "m_supportCache", "classgridfire_1_1partition_1_1_composite_partition_function.html#a9aea5eda63b9be4d3b8f65c13d317dcc", null ] ]; \ No newline at end of file diff --git a/docs/html/classgridfire_1_1partition_1_1_ground_state_partition_function-members.html b/docs/html/classgridfire_1_1partition_1_1_ground_state_partition_function-members.html index 5679e5d3..d97e8345 100644 --- a/docs/html/classgridfire_1_1partition_1_1_ground_state_partition_function-members.html +++ b/docs/html/classgridfire_1_1partition_1_1_ground_state_partition_function-members.html @@ -29,7 +29,7 @@ -
        GridFire 0.6.0 +
        GridFire v0.7.0-alpha
        General Purpose Nuclear Network
        diff --git a/docs/html/classgridfire_1_1partition_1_1_ground_state_partition_function.html b/docs/html/classgridfire_1_1partition_1_1_ground_state_partition_function.html index b2667180..87b66201 100644 --- a/docs/html/classgridfire_1_1partition_1_1_ground_state_partition_function.html +++ b/docs/html/classgridfire_1_1partition_1_1_ground_state_partition_function.html @@ -29,7 +29,7 @@ -
        GridFire 0.6.0 +
        GridFire v0.7.0-alpha
        General Purpose Nuclear Network
        diff --git a/docs/html/classgridfire_1_1partition_1_1_partition_function-members.html b/docs/html/classgridfire_1_1partition_1_1_partition_function-members.html index 6ccd17ee..1ec7f2cf 100644 --- a/docs/html/classgridfire_1_1partition_1_1_partition_function-members.html +++ b/docs/html/classgridfire_1_1partition_1_1_partition_function-members.html @@ -29,7 +29,7 @@ -
        GridFire 0.6.0 +
        GridFire v0.7.0-alpha
        General Purpose Nuclear Network
        diff --git a/docs/html/classgridfire_1_1partition_1_1_partition_function.html b/docs/html/classgridfire_1_1partition_1_1_partition_function.html index 6727fecb..9f243ab8 100644 --- a/docs/html/classgridfire_1_1partition_1_1_partition_function.html +++ b/docs/html/classgridfire_1_1partition_1_1_partition_function.html @@ -29,7 +29,7 @@ -
        GridFire 0.6.0 +
        GridFire v0.7.0-alpha
        General Purpose Nuclear Network
        diff --git a/docs/html/classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function-members.html b/docs/html/classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function-members.html index 6456bb1f..29ce64d8 100644 --- a/docs/html/classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function-members.html +++ b/docs/html/classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function-members.html @@ -29,7 +29,7 @@ -
        GridFire 0.6.0 +
        GridFire v0.7.0-alpha
        General Purpose Nuclear Network
        diff --git a/docs/html/classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html b/docs/html/classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html index ba38ca35..d499dd8d 100644 --- a/docs/html/classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html +++ b/docs/html/classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html @@ -29,7 +29,7 @@ -
        GridFire 0.6.0 +
        GridFire v0.7.0-alpha
        General Purpose Nuclear Network
        diff --git a/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator-members.html b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator-members.html index 3a105bec..352741e2 100644 --- a/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator-members.html +++ b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator-members.html @@ -29,7 +29,7 @@ -
        GridFire 0.6.0 +
        GridFire v0.7.0-alpha
        General Purpose Nuclear Network
        @@ -106,10 +106,10 @@ $(function(){initNavTree('classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpola

        This is the complete list of members for gridfire::rates::weak::WeakRateInterpolator, including all inherited members.

        - - - - + + + +
        available_isotopes() constgridfire::rates::weak::WeakRateInterpolator
        get_rate_derivatives(uint16_t A, uint8_t Z, double t9, double log_rhoYe, double mu_e) constgridfire::rates::weak::WeakRateInterpolator
        get_rates(uint16_t A, uint8_t Z, double t9, double log_rhoYe, double mu_e) constgridfire::rates::weak::WeakRateInterpolator
        m_rate_tablegridfire::rates::weak::WeakRateInterpolatorprivate
        pack_isotope_id(uint16_t A, uint8_t Z)gridfire::rates::weak::WeakRateInterpolatorprivatestatic
        get_rate_derivatives(uint16_t A, uint8_t Z, double t9, double log_rhoYe) constgridfire::rates::weak::WeakRateInterpolator
        get_rates(uint16_t A, uint8_t Z, double t9, double log_rhoYe) constgridfire::rates::weak::WeakRateInterpolator
        m_loggergridfire::rates::weak::WeakRateInterpolatorprivate
        m_rate_tablegridfire::rates::weak::WeakRateInterpolatorprivate
        RowDataTable typedefgridfire::rates::weak::WeakRateInterpolator
        WeakRateInterpolator(const RowDataTable &raw_data)gridfire::rates::weak::WeakRateInterpolatorexplicit
        diff --git a/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html index a5f57e02..b1a04efc 100644 --- a/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html +++ b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html @@ -29,7 +29,7 @@ -
        GridFire 0.6.0 +
        GridFire v0.7.0-alpha
        General Purpose Nuclear Network
        @@ -102,7 +102,6 @@ $(function(){initNavTree('classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpola
        Public Types | Public Member Functions | -Static Private Member Functions | Private Attributes | List of all members
        gridfire::rates::weak::WeakRateInterpolator Class Reference
        @@ -128,21 +127,17 @@ Public Member Functions std::vector< fourdst::atomic::Species > available_isotopes () const  List isotopes for which tables are available.
          -std::expected< WeakRatePayload, InterpolationError > get_rates (uint16_t A, uint8_t Z, double t9, double log_rhoYe, double mu_e) const - Trilinear interpolation of weak-rate payload at a state.
        -  -std::expected< WeakRateDerivatives, InterpolationError > get_rate_derivatives (uint16_t A, uint8_t Z, double t9, double log_rhoYe, double mu_e) const - Finite-difference partial derivatives of the log10() fields.
        -  - - - - - + + + + + +

        -Static Private Member Functions

        static uint32_t pack_isotope_id (uint16_t A, uint8_t Z)
         Pack (A,Z) into a 32-bit key used for the internal map.
         
        std::expected< WeakRatePayload, InterpolationError > get_rates (uint16_t A, uint8_t Z, double t9, double log_rhoYe) const
         Trilinear interpolation of weak-rate payload at a state.
         
        std::expected< WeakRateDerivatives, InterpolationError > get_rate_derivatives (uint16_t A, uint8_t Z, double t9, double log_rhoYe) const
         Finite-difference partial derivatives of the log10() fields.
         
        + + @@ -150,8 +145,8 @@ Private Attributes

        Detailed Description

        3D table interpolator for tabulated weak reaction data by isotope.

        Builds per-isotope 3D grids over (T9, log10(rho*Ye), mu_e) and provides:

        Implementation summary (constructor): rows are grouped by (A,Z), then each group's unique axis values are collected and sorted to form the three axes; the 3D payload array is populated at each lattice point with the 6 log10() fields from the raw table.

        Member Typedef Documentation

        @@ -235,13 +230,13 @@ Private Attributes
        Example
        WeakRateInterpolator interp(rows);
        auto isotopes = interp.available_isotopes();
        -
        gridfire::rates::weak::WeakRateInterpolator::WeakRateInterpolator
        WeakRateInterpolator(const RowDataTable &raw_data)
        Construct the interpolator from raw weak-rate rows.
        Definition weak_interpolator.cpp:18
        +
        gridfire::rates::weak::WeakRateInterpolator::WeakRateInterpolator
        WeakRateInterpolator(const RowDataTable &raw_data)
        Construct the interpolator from raw weak-rate rows.
        Definition weak_interpolator.cpp:21
        - -

        ◆ get_rate_derivatives()

        + +

        ◆ get_rate_derivatives()

        @@ -267,12 +262,7 @@ Private Attributes
        - - - - - - +

        Private Attributes

        quill::Logger * m_logger = fourdst::logging::LogManager::getInstance().getLogger("log")
         
        std::unordered_map< uint32_t, IsotopeGrid > m_rate_table
         Per-isotope grids over (T9, log10(rho*Ye), mu_e) with payloads at lattice nodes.
         
        double log_rhoYe,
        double mu_e ) constdouble log_rhoYe ) const
        @@ -290,7 +280,6 @@ Private Attributes ZProton number of the isotope. t9Temperature in GK (10^9 K). log_rhoYeLog10 of rho*Ye (cgs density times electron fraction). - mu_eElectron chemical potential (MeV). @@ -302,8 +291,8 @@ Private Attributes
        - -

        ◆ get_rates()

        + +

        ◆ get_rates()

        @@ -329,12 +318,7 @@ Private Attributes - double log_rhoYe, - - - - - double mu_e ) const + double log_rhoYe ) const @@ -352,7 +336,6 @@ Private Attributes ZProton number of the isotope. t9Temperature in GK (10^9 K). log_rhoYeLog10 of rho*Ye (cgs density times electron fraction). - mu_eElectron chemical potential (MeV). @@ -367,8 +350,9 @@ Private Attributes
        - -

        ◆ pack_isotope_id()

        +

        Member Data Documentation

        + +

        ◆ m_logger

        @@ -377,29 +361,18 @@ Private Attributes - - - - - - - - +
        uint32_t gridfire::rates::weak::WeakRateInterpolator::pack_isotope_id (uint16_t A,
        uint8_t Z )quill::Logger* gridfire::rates::weak::WeakRateInterpolator::m_logger = fourdst::logging::LogManager::getInstance().getLogger("log")
        -staticprivate +private
        -

        Pack (A,Z) into a 32-bit key used for the internal map.

        -

        Layout: (A << 8) | Z. To unpack, use (key >> 8) for A and (key & 0xFF) for Z.

        -
        -

        Member Data Documentation

        ◆ m_rate_table

        diff --git a/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.js b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.js index c2fe2e6e..21d9d349 100644 --- a/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.js +++ b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.js @@ -3,8 +3,8 @@ var classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator = [ "RowDataTable", "classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#afd3e0e1c5edaf12609b5fc81c379e3e5", null ], [ "WeakRateInterpolator", "classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#a1efafe82d25d36b93a60a6fccbd5ca3d", null ], [ "available_isotopes", "classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#a976f84b6f6e33b5f3dd733a771afd7ba", null ], - [ "get_rate_derivatives", "classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#a48cec4c8f1e117f73d7e88c3597b4d16", null ], - [ "get_rates", "classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#ae36a65c29c34b004111d266dc668107b", null ], - [ "pack_isotope_id", "classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#ac73e9476c89ec7066999b0986bc0d9c1", null ], + [ "get_rate_derivatives", "classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#ac04ae382defc51645c632db6ad3830d7", null ], + [ "get_rates", "classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#a730c8e7fe5218c5ce077531bc7924d79", null ], + [ "m_logger", "classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#a2962864d8a6f8760a4228729838b6edb", null ], [ "m_rate_table", "classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#a7a01f956eccd3a0a90dd08984ca3f009", null ] ]; \ No newline at end of file diff --git a/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction-members.html b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction-members.html index 65ca3bd5..7e54ccd9 100644 --- a/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction-members.html +++ b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction-members.html @@ -29,7 +29,7 @@ -
        GridFire 0.6.0 +
        GridFire v0.7.0-alpha
        General Purpose Nuclear Network
        @@ -118,10 +118,10 @@ $(function(){initNavTree('classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html' contains_reactant(const fourdst::atomic::Species &species) const overridegridfire::rates::weak::WeakReactionvirtual get_log_neutrino_loss_from_payload(const WeakRatePayload &payload) constgridfire::rates::weak::WeakReactionprivate get_log_rate_from_payload(const WeakRatePayload &payload) constgridfire::rates::weak::WeakReactionprivate - getWeakRateInterpolator() constgridfire::rates::weak::WeakReactioninline + getWeakRateInterpolator() constgridfire::rates::weak::WeakReaction hash(uint64_t seed) const overridegridfire::rates::weak::WeakReactionvirtual - id() const overridegridfire::rates::weak::WeakReactioninlinevirtual - is_reverse() const overridegridfire::rates::weak::WeakReactioninlinevirtual + id() const overridegridfire::rates::weak::WeakReactionvirtual + is_reverse() const overridegridfire::rates::weak::WeakReactionvirtual m_atomicgridfire::rates::weak::WeakReactionmutableprivate m_constantsgridfire::rates::weak::WeakReactionprivate m_idgridfire::rates::weak::WeakReactionprivate @@ -129,19 +129,21 @@ $(function(){initNavTree('classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html' m_productgridfire::rates::weak::WeakReactionprivate m_product_agridfire::rates::weak::WeakReactionprivate m_product_zgridfire::rates::weak::WeakReactionprivate - m_reactantgridfire::rates::weak::WeakReactionprivate - m_reactant_agridfire::rates::weak::WeakReactionprivate - m_reactant_zgridfire::rates::weak::WeakReactionprivate + m_productsgridfire::rates::weak::WeakReactionprivate + m_reactantgridfire::rates::weak::WeakReactionprivate + m_reactant_agridfire::rates::weak::WeakReactionprivate + m_reactant_zgridfire::rates::weak::WeakReactionprivate + m_reactantsgridfire::rates::weak::WeakReactionprivate m_typegridfire::rates::weak::WeakReactionprivate - num_species() const overridegridfire::rates::weak::WeakReactioninlinevirtual + num_species() const overridegridfire::rates::weak::WeakReactionvirtual product_species() const overridegridfire::rates::weak::WeakReactionvirtual - products() const overridegridfire::rates::weak::WeakReactioninlinevirtual + products() const overridegridfire::rates::weak::WeakReactionvirtual qValue() const overridegridfire::rates::weak::WeakReactionvirtual reactant_species() const overridegridfire::rates::weak::WeakReactionvirtual - reactants() const overridegridfire::rates::weak::WeakReactioninlinevirtual + reactants() const overridegridfire::rates::weak::WeakReactionvirtual stoichiometry() const overridegridfire::rates::weak::WeakReactionvirtual stoichiometry(const fourdst::atomic::Species &species) const overridegridfire::rates::weak::WeakReactionvirtual - type() const overridegridfire::rates::weak::WeakReactioninlinevirtual + type() const overridegridfire::rates::weak::WeakReactionvirtual WeakReaction(const fourdst::atomic::Species &species, WeakReactionType type, const WeakRateInterpolator &interpolator)gridfire::rates::weak::WeakReactionexplicit ~Reaction()=defaultgridfire::reaction::Reactionvirtual
        diff --git a/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html index a6b0ddf0..2770297f 100644 --- a/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html +++ b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html @@ -29,7 +29,7 @@ -
        GridFire 0.6.0 +
        GridFire v0.7.0-alpha
        General Purpose Nuclear Network
        @@ -231,6 +231,10 @@ Private Attributes   fourdst::atomic::Species m_product   +std::vector< fourdst::atomic::Species > m_reactants +  +std::vector< fourdst::atomic::Species > m_products +  size_t m_reactant_a   size_t m_reactant_z @@ -946,7 +950,7 @@ template<IsArithmeticOrAD T>
        -inlinenodiscard +nodiscard
        @@ -1002,7 +1006,7 @@ template<IsArithmeticOrAD T>
        -inlinenodiscardoverridevirtual +nodiscardoverridevirtual
        @@ -1032,7 +1036,7 @@ template<IsArithmeticOrAD T>
        -inlinenodiscardoverridevirtual +nodiscardoverridevirtual
        @@ -1061,7 +1065,7 @@ template<IsArithmeticOrAD T>
        -inlinenodiscardoverridevirtual +nodiscardoverridevirtual
        @@ -1119,7 +1123,7 @@ template<IsArithmeticOrAD T>
        -inlinenodiscardoverridevirtual +nodiscardoverridevirtual
        @@ -1208,7 +1212,7 @@ template<IsArithmeticOrAD T>
        -inlinenodiscardoverridevirtual +nodiscardoverridevirtual
      @@ -1296,7 +1300,7 @@ template<IsArithmeticOrAD T>
      -inlinenodiscardoverridevirtual +nodiscardoverridevirtual
      @@ -1460,6 +1464,28 @@ template<IsArithmeticOrAD T>
      +
      +
      + +

      ◆ m_products

      + +
      +
      + + + + + +
      + + + + +
      std::vector<fourdst::atomic::Species> gridfire::rates::weak::WeakReaction::m_products
      +       		+private
      +
      +
      @@ -1526,6 +1552,28 @@ template<IsArithmeticOrAD T>
      +
      +
      + +

      ◆ m_reactants

      + +
      +
      + + + + + +
      + + + + +
      std::vector<fourdst::atomic::Species> gridfire::rates::weak::WeakReaction::m_reactants
      +       		+private
      +
      +
      diff --git a/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction.js b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction.js index 020c8097..c8dac2de 100644 --- a/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction.js +++ b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction.js @@ -36,8 +36,10 @@ var classgridfire_1_1rates_1_1weak_1_1_weak_reaction = [ "m_product", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aee395d13ed3a515d5c1d69bedffca5de", null ], [ "m_product_a", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a2567545c89eb847a15909b02fa0f383e", null ], [ "m_product_z", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ab1be1d3010ff539b8a911506734fd9cf", null ], + [ "m_products", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a71ca233a081c7aed54ace061ea362231", null ], [ "m_reactant", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aeaceef054714e2a9667986406107ba3a", null ], [ "m_reactant_a", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a37dfb1d460e78e81a6def62e7217e6f8", null ], [ "m_reactant_z", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a3d1b52076e102d07acb7200a7ee99165", null ], + [ "m_reactants", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a46c36a6e517fb00a2ac3cbb0f546a341", null ], [ "m_type", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a92c3590161c63c6ed4e7650d2b7beee3", null ] ]; \ No newline at end of file diff --git a/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate-members.html b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate-members.html index fe5af8fe..216c0094 100644 --- a/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate-members.html +++ b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate-members.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      @@ -107,12 +107,14 @@ $(function(){initNavTree('classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_a - - - - - - + + + + + + + +
      AtomicWeakRate(const WeakRateInterpolator &interpolator, const size_t a, const size_t z, const WeakReactionType type)gridfire::rates::weak::WeakReaction::AtomicWeakRateinline
      for_sparse_jac(size_t q, const CppAD::vector< std::set< size_t > > &r, CppAD::vector< std::set< size_t > > &s) overridegridfire::rates::weak::WeakReaction::AtomicWeakRate
      forward(size_t p, size_t q, const CppAD::vector< bool > &vx, CppAD::vector< bool > &vy, const CppAD::vector< double > &tx, CppAD::vector< double > &ty) overridegridfire::rates::weak::WeakReaction::AtomicWeakRate
      m_agridfire::rates::weak::WeakReaction::AtomicWeakRateprivate
      m_interpolatorgridfire::rates::weak::WeakReaction::AtomicWeakRateprivate
      m_typegridfire::rates::weak::WeakReaction::AtomicWeakRateprivate
      m_zgridfire::rates::weak::WeakReaction::AtomicWeakRateprivate
      rev_sparse_jac(size_t q, const CppAD::vector< std::set< size_t > > &rt, CppAD::vector< std::set< size_t > > &st) overridegridfire::rates::weak::WeakReaction::AtomicWeakRate
      for_sparse_jac(size_t q, const CppAD::vector< bool > &r, CppAD::vector< bool > &s, const CppAD::vector< double > &x) overridegridfire::rates::weak::WeakReaction::AtomicWeakRate
      forward(size_t p, size_t q, const CppAD::vector< bool > &vx, CppAD::vector< bool > &vy, const CppAD::vector< double > &tx, CppAD::vector< double > &ty) overridegridfire::rates::weak::WeakReaction::AtomicWeakRate
      m_agridfire::rates::weak::WeakReaction::AtomicWeakRateprivate
      m_interpolatorgridfire::rates::weak::WeakReaction::AtomicWeakRateprivate
      m_typegridfire::rates::weak::WeakReaction::AtomicWeakRateprivate
      m_zgridfire::rates::weak::WeakReaction::AtomicWeakRateprivate
      rev_sparse_jac(size_t q, const CppAD::vector< std::set< size_t > > &rt, CppAD::vector< std::set< size_t > > &st) overridegridfire::rates::weak::WeakReaction::AtomicWeakRate
      rev_sparse_jac(size_t q, const CppAD::vector< bool > &rt, CppAD::vector< bool > &st, const CppAD::vector< double > &x) overridegridfire::rates::weak::WeakReaction::AtomicWeakRate
      reverse(size_t q, const CppAD::vector< double > &tx, const CppAD::vector< double > &ty, CppAD::vector< double > &px, const CppAD::vector< double > &py) overridegridfire::rates::weak::WeakReaction::AtomicWeakRate
      diff --git a/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html index 603b1a28..f524799e 100644 --- a/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html +++ b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      @@ -133,6 +133,10 @@ Public Member Functions bool rev_sparse_jac (size_t q, const CppAD::vector< std::set< size_t > > &rt, CppAD::vector< std::set< size_t > > &st) override  Reverse-mode sparsity for Jacobian.
        +bool for_sparse_jac (size_t q, const CppAD::vector< bool > &r, CppAD::vector< bool > &s, const CppAD::vector< double > &x) override +  +bool rev_sparse_jac (size_t q, const CppAD::vector< bool > &rt, CppAD::vector< bool > &st, const CppAD::vector< double > &x) override +  @@ -200,8 +204,47 @@ Private Attributes

      Member Function Documentation

      + +

      ◆ for_sparse_jac() [1/2]

      + +
      +
      +

      Private Attributes

      + + + + +
      + + + + + + + + + + + + + + + + + + + + + +
      bool gridfire::rates::weak::WeakReaction::AtomicWeakRate::for_sparse_jac (size_t q,
      const CppAD::vector< bool > & r,
      CppAD::vector< bool > & s,
      const CppAD::vector< double > & x )
      +       		+override
      +
      + +
      +
      -

      ◆ for_sparse_jac()

      +

      ◆ for_sparse_jac() [2/2]

      @@ -285,10 +328,49 @@ Private Attributes

      Forward pass: compute rate and neutrino-loss values for AD. On failure to interpolate, throws a std::runtime_error with details; sets output sparsity such that both outputs depend on all inputs when any input is variable.

      +
      +
      + +

      ◆ rev_sparse_jac() [1/2]

      + +
      +
      + + + + + +
      + + + + + + + + + + + + + + + + + + + + + +
      bool gridfire::rates::weak::WeakReaction::AtomicWeakRate::rev_sparse_jac (size_t q,
      const CppAD::vector< bool > & rt,
      CppAD::vector< bool > & st,
      const CppAD::vector< double > & x )
      +       		+override
      +
      +
      -

      ◆ rev_sparse_jac()

      +

      ◆ rev_sparse_jac() [2/2]

      diff --git a/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.js b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.js index ecb0e7b8..33185e91 100644 --- a/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.js +++ b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.js @@ -1,8 +1,10 @@ var classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate = [ [ "AtomicWeakRate", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a46d76ca50ee00198a9f4a873c6ceb874", null ], + [ "for_sparse_jac", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#ae4c3bb00eafddb923be7ba4c3b6a25ff", null ], [ "for_sparse_jac", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a976a2ef2e58439429c1a6e94c27f4662", null ], [ "forward", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#ab4f12e8da29d4d158fb0adf2db31b4bb", null ], + [ "rev_sparse_jac", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a9f2681d58e10b6b740b4588efbce5ae5", null ], [ "rev_sparse_jac", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#ae9d61bdda761da89733408c232d7220e", null ], [ "reverse", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#aad13654ea15547c2c95035c3b7937d58", null ], [ "m_a", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a0beb567afdecd85e336b493ff85326bd", null ], diff --git a/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map-members.html b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map-members.html index 6b6f398d..26356a03 100644 --- a/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map-members.html +++ b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map-members.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      diff --git a/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html index 4cd604b5..271820f1 100644 --- a/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html +++ b/docs/html/classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      @@ -213,8 +213,8 @@ Private Attributes
      Example
      WeakReactionMap map;
      auto all = map.get_all_reactions();
      // iterate or group as needed
      -
      gridfire::rates::weak::WeakReactionMap::get_all_reactions
      std::vector< WeakReactionEntry > get_all_reactions() const
      Return a flat list of all weak reaction entries.
      Definition weak.cpp:133
      -
      gridfire::rates::weak::WeakReactionMap::WeakReactionMap
      WeakReactionMap()
      Construct the map by loading all weak reaction entries.
      Definition weak.cpp:74
      +
      gridfire::rates::weak::WeakReactionMap::get_all_reactions
      std::vector< WeakReactionEntry > get_all_reactions() const
      Return a flat list of all weak reaction entries.
      Definition weak.cpp:167
      +
      gridfire::rates::weak::WeakReactionMap::WeakReactionMap
      WeakReactionMap()
      Construct the map by loading all weak reaction entries.
      Definition weak.cpp:99
      @@ -258,7 +258,7 @@ Private Attributes
      } else {
      // handle WeakMapError::SPECIES_NOT_FOUND
      }
      -
      gridfire::rates::weak::WeakReactionMap::get_species_reactions
      std::expected< std::vector< WeakReactionEntry >, WeakMapError > get_species_reactions(const fourdst::atomic::Species &species) const
      Get all weak reaction entries for a given species.
      Definition weak.cpp:141
      +
      gridfire::rates::weak::WeakReactionMap::get_species_reactions
      std::expected< std::vector< WeakReactionEntry >, WeakMapError > get_species_reactions(const fourdst::atomic::Species &species) const
      Get all weak reaction entries for a given species.
      Definition weak.cpp:175
      diff --git a/docs/html/classgridfire_1_1reaction_1_1_logical_reaclib_reaction-members.html b/docs/html/classgridfire_1_1reaction_1_1_logical_reaclib_reaction-members.html index 441fee8c..a6c170e6 100644 --- a/docs/html/classgridfire_1_1reaction_1_1_logical_reaclib_reaction-members.html +++ b/docs/html/classgridfire_1_1reaction_1_1_logical_reaclib_reaction-members.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      @@ -127,38 +127,39 @@ $(function(){initNavTree('classgridfire_1_1reaction_1_1_logical_reaclib_reaction id() const overridegridfire::reaction::ReaclibReactioninlinevirtual is_reverse() const overridegridfire::reaction::ReaclibReactioninlinevirtual LogicalReaclibReaction(const std::vector< ReaclibReaction > &reactions)gridfire::reaction::LogicalReaclibReactionexplicit - m_chaptergridfire::reaction::ReaclibReactionprotected - m_idgridfire::reaction::ReaclibReactionprotected - m_loggergridfire::reaction::ReaclibReactionprotected - m_peNamegridfire::reaction::ReaclibReactionprotected - m_productsgridfire::reaction::ReaclibReactionprotected - m_qValuegridfire::reaction::ReaclibReactionprotected - m_rateCoefficientsgridfire::reaction::ReaclibReactionprotected - m_ratesgridfire::reaction::LogicalReaclibReactionprivate - m_reactantsgridfire::reaction::ReaclibReactionprotected - m_reversegridfire::reaction::ReaclibReactionprotected - m_sourceLabelgridfire::reaction::ReaclibReactionprotected - m_sourcesgridfire::reaction::LogicalReaclibReactionprivate - num_species() const overridegridfire::reaction::ReaclibReactionvirtual - operator!=(const ReaclibReaction &other) constgridfire::reaction::ReaclibReactioninline - operator<<(std::ostream &os, const LogicalReaclibReaction &r)gridfire::reaction::LogicalReaclibReactionfriend - operator==(const ReaclibReaction &other) constgridfire::reaction::ReaclibReactioninline - peName() constgridfire::reaction::ReaclibReactioninlinevirtual - product_species() const overridegridfire::reaction::ReaclibReactionvirtual - products() const overridegridfire::reaction::ReaclibReactioninlinevirtual - qValue() const overridegridfire::reaction::ReaclibReactioninlinevirtual - rateCoefficients() constgridfire::reaction::ReaclibReactioninline - ReaclibReaction(std::string_view id, std::string_view peName, int chapter, const std::vector< fourdst::atomic::Species > &reactants, const std::vector< fourdst::atomic::Species > &products, double qValue, std::string_view label, const RateCoefficientSet &sets, bool reverse=false)gridfire::reaction::ReaclibReaction - reactant_species() const overridegridfire::reaction::ReaclibReactionvirtual - reactants() const overridegridfire::reaction::ReaclibReactioninlinevirtual - size() constgridfire::reaction::LogicalReaclibReactioninline - sourceLabel() constgridfire::reaction::ReaclibReactioninline - sources() constgridfire::reaction::LogicalReaclibReactioninline - stoichiometry(const fourdst::atomic::Species &species) const overridegridfire::reaction::ReaclibReactionvirtual - stoichiometry() const overridegridfire::reaction::ReaclibReactionvirtual - type() const overridegridfire::reaction::LogicalReaclibReactioninlinevirtual - ~ReaclibReaction() override=defaultgridfire::reaction::ReaclibReaction - ~Reaction()=defaultgridfire::reaction::Reactionvirtual + LogicalReaclibReaction(const std::vector< ReaclibReaction > &reactions, bool reverse)gridfire::reaction::LogicalReaclibReactionexplicit + m_chaptergridfire::reaction::ReaclibReactionprotected + m_idgridfire::reaction::ReaclibReactionprotected + m_loggergridfire::reaction::ReaclibReactionprotected + m_peNamegridfire::reaction::ReaclibReactionprotected + m_productsgridfire::reaction::ReaclibReactionprotected + m_qValuegridfire::reaction::ReaclibReactionprotected + m_rateCoefficientsgridfire::reaction::ReaclibReactionprotected + m_ratesgridfire::reaction::LogicalReaclibReactionprivate + m_reactantsgridfire::reaction::ReaclibReactionprotected + m_reversegridfire::reaction::ReaclibReactionprotected + m_sourceLabelgridfire::reaction::ReaclibReactionprotected + m_sourcesgridfire::reaction::LogicalReaclibReactionprivate + num_species() const overridegridfire::reaction::ReaclibReactionvirtual + operator!=(const ReaclibReaction &other) constgridfire::reaction::ReaclibReactioninline + operator<<(std::ostream &os, const LogicalReaclibReaction &r)gridfire::reaction::LogicalReaclibReactionfriend + operator==(const ReaclibReaction &other) constgridfire::reaction::ReaclibReactioninline + peName() constgridfire::reaction::ReaclibReactioninlinevirtual + product_species() const overridegridfire::reaction::ReaclibReactionvirtual + products() const overridegridfire::reaction::ReaclibReactioninlinevirtual + qValue() const overridegridfire::reaction::ReaclibReactioninlinevirtual + rateCoefficients() constgridfire::reaction::ReaclibReactioninline + ReaclibReaction(std::string_view id, std::string_view peName, int chapter, const std::vector< fourdst::atomic::Species > &reactants, const std::vector< fourdst::atomic::Species > &products, double qValue, std::string_view label, const RateCoefficientSet &sets, bool reverse=false)gridfire::reaction::ReaclibReaction + reactant_species() const overridegridfire::reaction::ReaclibReactionvirtual + reactants() const overridegridfire::reaction::ReaclibReactioninlinevirtual + size() constgridfire::reaction::LogicalReaclibReactioninline + sourceLabel() constgridfire::reaction::ReaclibReactioninline + sources() constgridfire::reaction::LogicalReaclibReactioninline + stoichiometry(const fourdst::atomic::Species &species) const overridegridfire::reaction::ReaclibReactionvirtual + stoichiometry() const overridegridfire::reaction::ReaclibReactionvirtual + type() const overridegridfire::reaction::LogicalReaclibReactioninlinevirtual + ~ReaclibReaction() override=defaultgridfire::reaction::ReaclibReaction + ~Reaction()=defaultgridfire::reaction::Reactionvirtual
      diff --git a/docs/html/classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html b/docs/html/classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html index d51b5c20..964c6e6a 100644 --- a/docs/html/classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html +++ b/docs/html/classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      @@ -127,8 +127,10 @@ Inheritance diagram for gridfire::reaction::LogicalReaclibReaction:

      Public Member Functions

       LogicalReaclibReaction (const std::vector< ReaclibReaction > &reactions) - Constructs a LogicalReaction from a vector of Reaction objects.
      + Constructs a LogicalReaction from a vector of Reaction objects. Implicitly assumes that the logical reaction is for a forward (i.e. not reverse) reaction.
        + LogicalReaclibReaction (const std::vector< ReaclibReaction > &reactions, bool reverse) +  void add_reaction (const ReaclibReaction &reaction)  Adds another Reaction source to this logical reaction.
        @@ -321,7 +323,7 @@ Additional Inherited Members

      A LogicalReaclibReaction shares the same reactants and products but combines rates from different evaluations (e.g., "wc12" and "st08" for the same physical reaction). The total rate is the sum of the individual rates. It inherits from Reaction, using the properties of the first provided reaction as its base properties (reactants, products, Q-value, etc.).

      Constructor & Destructor Documentation

      -

      ◆ LogicalReaclibReaction()

      +

      ◆ LogicalReaclibReaction() [1/2]

      @@ -343,7 +345,7 @@ Additional Inherited Members
      -

      Constructs a LogicalReaction from a vector of Reaction objects.

      +

      Constructs a LogicalReaction from a vector of Reaction objects. Implicitly assumes that the logical reaction is for a forward (i.e. not reverse) reaction.

      Parameters
      @@ -357,6 +359,43 @@ Additional Inherited Members + + + +

      ◆ LogicalReaclibReaction() [2/2]

      + +
      +
      +
      reactionsA vector of reactions that represent the same logical process.
      + + + + +
      + + + + + + + + + + + +
      gridfire::reaction::LogicalReaclibReaction::LogicalReaclibReaction (const std::vector< ReaclibReaction > & reactions,
      bool reverse )
      +       		+explicit
      +
      +

      @breif Constructs a LogicalReaction from a vector of Reaction objects and allows the user to specify if the logical set is for a reverse reaction explicitly

      Parameters
      + + + +
      reactionsA vector of reactions that represent the same logical process
      reverseA flag to control if this logical reaction is reverse or not
      +
      +
      +
      Returns
      std::runtime_error if the provided reactions have inconsistent Q-values.
      +

      Member Function Documentation

      diff --git a/docs/html/classgridfire_1_1reaction_1_1_logical_reaclib_reaction.js b/docs/html/classgridfire_1_1reaction_1_1_logical_reaclib_reaction.js index 0ae5cb64..581e0f6e 100644 --- a/docs/html/classgridfire_1_1reaction_1_1_logical_reaclib_reaction.js +++ b/docs/html/classgridfire_1_1reaction_1_1_logical_reaclib_reaction.js @@ -1,6 +1,7 @@ var classgridfire_1_1reaction_1_1_logical_reaclib_reaction = [ [ "LogicalReaclibReaction", "classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a0ff112dca1f88070effb6700429b42b4", null ], + [ "LogicalReaclibReaction", "classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a7e6d50f866be9239ac620607741280cc", null ], [ "add_reaction", "classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a69508797ca0793f6d3f58de4e0b97667", null ], [ "begin", "classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a1353d7d2208497b38799bf69f574c275", null ], [ "begin", "classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a211b1332dc12a1fee942523dbc688272", null ], diff --git a/docs/html/classgridfire_1_1reaction_1_1_reaclib_reaction-members.html b/docs/html/classgridfire_1_1reaction_1_1_reaclib_reaction-members.html index b909b9aa..c08b58d1 100644 --- a/docs/html/classgridfire_1_1reaction_1_1_reaclib_reaction-members.html +++ b/docs/html/classgridfire_1_1reaction_1_1_reaclib_reaction-members.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      diff --git a/docs/html/classgridfire_1_1reaction_1_1_reaclib_reaction.html b/docs/html/classgridfire_1_1reaction_1_1_reaclib_reaction.html index 6309b854..d232c552 100644 --- a/docs/html/classgridfire_1_1reaction_1_1_reaclib_reaction.html +++ b/docs/html/classgridfire_1_1reaction_1_1_reaclib_reaction.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      diff --git a/docs/html/classgridfire_1_1reaction_1_1_reaction-members.html b/docs/html/classgridfire_1_1reaction_1_1_reaction-members.html index 57f8f692..d7a7fa9f 100644 --- a/docs/html/classgridfire_1_1reaction_1_1_reaction-members.html +++ b/docs/html/classgridfire_1_1reaction_1_1_reaction-members.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      diff --git a/docs/html/classgridfire_1_1reaction_1_1_reaction.html b/docs/html/classgridfire_1_1reaction_1_1_reaction.html index 86ef221d..87af8c64 100644 --- a/docs/html/classgridfire_1_1reaction_1_1_reaction.html +++ b/docs/html/classgridfire_1_1reaction_1_1_reaction.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      @@ -208,7 +208,7 @@ Friends
      "H_1_H_1_to_H_2", "p(p,g)d", 1, {H_1, H_1}, {H_2}, 5.493, "st08", rate_coeffs
      );
      double rate = p_gamma_d.calculate_rate(0.1); // T9 = 0.1
      -
      gridfire::reaction::Reaction
      Represents a single nuclear reaction from a specific data source.
      Definition reaction.h:78
      +
      gridfire::reaction::Reaction
      Represents a single nuclear reaction from a specific data source.
      Definition reaction.h:92
      gridfire::reaction::Reaction::calculate_rate
      virtual double calculate_rate(double T9, double rho, double Ye, double mue, const std::vector< double > &Y, const std::unordered_map< size_t, fourdst::atomic::Species > &index_to_species_map) const =0
      Compute the temperature- and composition-dependent reaction rate.

      Constructor & Destructor Documentation

      diff --git a/docs/html/classgridfire_1_1reaction_1_1_reaction_set-members.html b/docs/html/classgridfire_1_1reaction_1_1_reaction_set-members.html index fdb44a00..59e2f644 100644 --- a/docs/html/classgridfire_1_1reaction_1_1_reaction_set-members.html +++ b/docs/html/classgridfire_1_1reaction_1_1_reaction_set-members.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      @@ -117,24 +117,25 @@ $(function(){initNavTree('classgridfire_1_1reaction_1_1_reaction_set.html',''); contains_species(const fourdst::atomic::Species &species) constgridfire::reaction::ReactionSet end()gridfire::reaction::ReactionSetinline end() constgridfire::reaction::ReactionSetinline - getReactionSetSpecies() constgridfire::reaction::ReactionSet - hash(uint64_t seed) constgridfire::reaction::ReactionSet - m_idgridfire::reaction::ReactionSetprivate - m_loggergridfire::reaction::ReactionSetprivate - m_reactionNameMapgridfire::reaction::ReactionSetprivate - m_reactionsgridfire::reaction::ReactionSetprivate - operator!=(const ReactionSet &other) constgridfire::reaction::ReactionSet - operator<<(std::ostream &os, const ReactionSet &rs)gridfire::reaction::ReactionSetfriend - operator=(const ReactionSet &other)gridfire::reaction::ReactionSet - operator==(const ReactionSet &other) constgridfire::reaction::ReactionSet - operator[](size_t index) constgridfire::reaction::ReactionSet - operator[](const std::string_view &id) constgridfire::reaction::ReactionSet - ReactionSet(std::vector< std::unique_ptr< Reaction > > &&reactions)gridfire::reaction::ReactionSetexplicit - ReactionSet(const std::vector< Reaction * > &reactions)gridfire::reaction::ReactionSetexplicit - ReactionSet()gridfire::reaction::ReactionSet - ReactionSet(const ReactionSet &other)gridfire::reaction::ReactionSet - remove_reaction(const Reaction &reaction)gridfire::reaction::ReactionSet - size() constgridfire::reaction::ReactionSetinline + extend(const ReactionSet &other)gridfire::reaction::ReactionSet + getReactionSetSpecies() constgridfire::reaction::ReactionSet + hash(uint64_t seed) constgridfire::reaction::ReactionSet + m_idgridfire::reaction::ReactionSetprivate + m_loggergridfire::reaction::ReactionSetprivate + m_reactionNameMapgridfire::reaction::ReactionSetprivate + m_reactionsgridfire::reaction::ReactionSetprivate + operator!=(const ReactionSet &other) constgridfire::reaction::ReactionSet + operator<<(std::ostream &os, const ReactionSet &rs)gridfire::reaction::ReactionSetfriend + operator=(const ReactionSet &other)gridfire::reaction::ReactionSet + operator==(const ReactionSet &other) constgridfire::reaction::ReactionSet + operator[](size_t index) constgridfire::reaction::ReactionSet + operator[](const std::string_view &id) constgridfire::reaction::ReactionSet + ReactionSet(std::vector< std::unique_ptr< Reaction > > &&reactions)gridfire::reaction::ReactionSetexplicit + ReactionSet(const std::vector< Reaction * > &reactions)gridfire::reaction::ReactionSetexplicit + ReactionSet()gridfire::reaction::ReactionSet + ReactionSet(const ReactionSet &other)gridfire::reaction::ReactionSet + remove_reaction(const Reaction &reaction)gridfire::reaction::ReactionSet + size() constgridfire::reaction::ReactionSetinline
      diff --git a/docs/html/classgridfire_1_1reaction_1_1_reaction_set.html b/docs/html/classgridfire_1_1reaction_1_1_reaction_set.html index d177acf5..af17e687 100644 --- a/docs/html/classgridfire_1_1reaction_1_1_reaction_set.html +++ b/docs/html/classgridfire_1_1reaction_1_1_reaction_set.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      @@ -130,6 +130,8 @@ Public Member Functions   void add_reaction (std::unique_ptr< Reaction > &&reaction)   +void extend (const ReactionSet &other) +  void remove_reaction (const Reaction &reaction)  Removes a reaction from the set.
        @@ -639,6 +641,23 @@ Friends
      +
      +
      + +

      ◆ extend()

      + +
      +
      + + + + + + + +
      void gridfire::reaction::ReactionSet::extend (const ReactionSet & other)
      +
      +
      diff --git a/docs/html/classgridfire_1_1reaction_1_1_reaction_set.js b/docs/html/classgridfire_1_1reaction_1_1_reaction_set.js index badada54..17df9d96 100644 --- a/docs/html/classgridfire_1_1reaction_1_1_reaction_set.js +++ b/docs/html/classgridfire_1_1reaction_1_1_reaction_set.js @@ -16,6 +16,7 @@ var classgridfire_1_1reaction_1_1_reaction_set = [ "contains_species", "classgridfire_1_1reaction_1_1_reaction_set.html#a5b872a8519740a6d06cfaed03784826a", null ], [ "end", "classgridfire_1_1reaction_1_1_reaction_set.html#abae9fbc4b4306479a6cd3173ac628987", null ], [ "end", "classgridfire_1_1reaction_1_1_reaction_set.html#a436f9c4b8f8a4e115b19728d57d8e105", null ], + [ "extend", "classgridfire_1_1reaction_1_1_reaction_set.html#a6a4836776f5dd00158d2336e5bcc3222", null ], [ "getReactionSetSpecies", "classgridfire_1_1reaction_1_1_reaction_set.html#a133ad8cca6a75d31ef8efe67801aef1b", null ], [ "hash", "classgridfire_1_1reaction_1_1_reaction_set.html#ad28907fc08de978461d68cc5b77a3a99", null ], [ "operator!=", "classgridfire_1_1reaction_1_1_reaction_set.html#a529189f464aebc6b5ac5c717f70e14b8", null ], diff --git a/docs/html/classgridfire_1_1screening_1_1_bare_screening_model-members.html b/docs/html/classgridfire_1_1screening_1_1_bare_screening_model-members.html index 4a275c9e..89266d02 100644 --- a/docs/html/classgridfire_1_1screening_1_1_bare_screening_model-members.html +++ b/docs/html/classgridfire_1_1screening_1_1_bare_screening_model-members.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      diff --git a/docs/html/classgridfire_1_1screening_1_1_bare_screening_model.html b/docs/html/classgridfire_1_1screening_1_1_bare_screening_model.html index 988cecea..e85667cd 100644 --- a/docs/html/classgridfire_1_1screening_1_1_bare_screening_model.html +++ b/docs/html/classgridfire_1_1screening_1_1_bare_screening_model.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      diff --git a/docs/html/classgridfire_1_1screening_1_1_intermediate_screening_model-members.html b/docs/html/classgridfire_1_1screening_1_1_intermediate_screening_model-members.html index f775b3c0..8d97ead4 100644 --- a/docs/html/classgridfire_1_1screening_1_1_intermediate_screening_model-members.html +++ b/docs/html/classgridfire_1_1screening_1_1_intermediate_screening_model-members.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      diff --git a/docs/html/classgridfire_1_1screening_1_1_intermediate_screening_model.html b/docs/html/classgridfire_1_1screening_1_1_intermediate_screening_model.html index 86d5a77f..8457b32f 100644 --- a/docs/html/classgridfire_1_1screening_1_1_intermediate_screening_model.html +++ b/docs/html/classgridfire_1_1screening_1_1_intermediate_screening_model.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      diff --git a/docs/html/classgridfire_1_1screening_1_1_screening_model-members.html b/docs/html/classgridfire_1_1screening_1_1_screening_model-members.html index 90331c59..4071afa1 100644 --- a/docs/html/classgridfire_1_1screening_1_1_screening_model-members.html +++ b/docs/html/classgridfire_1_1screening_1_1_screening_model-members.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      diff --git a/docs/html/classgridfire_1_1screening_1_1_screening_model.html b/docs/html/classgridfire_1_1screening_1_1_screening_model.html index f824d92c..0eb09a9a 100644 --- a/docs/html/classgridfire_1_1screening_1_1_screening_model.html +++ b/docs/html/classgridfire_1_1screening_1_1_screening_model.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      diff --git a/docs/html/classgridfire_1_1screening_1_1_weak_screening_model-members.html b/docs/html/classgridfire_1_1screening_1_1_weak_screening_model-members.html index e6a92475..4f198c18 100644 --- a/docs/html/classgridfire_1_1screening_1_1_weak_screening_model-members.html +++ b/docs/html/classgridfire_1_1screening_1_1_weak_screening_model-members.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      diff --git a/docs/html/classgridfire_1_1screening_1_1_weak_screening_model.html b/docs/html/classgridfire_1_1screening_1_1_weak_screening_model.html index f9ac713c..392b03c5 100644 --- a/docs/html/classgridfire_1_1screening_1_1_weak_screening_model.html +++ b/docs/html/classgridfire_1_1screening_1_1_weak_screening_model.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      diff --git a/docs/html/classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy-members.html b/docs/html/classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy-members.html index 373f2a40..23f66e70 100644 --- a/docs/html/classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy-members.html +++ b/docs/html/classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy-members.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      @@ -114,33 +114,34 @@ $(function(){initNavTree('classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy. CVODESolverStrategy(CVODESolverStrategy &&)=deletegridfire::solver::CVODESolverStrategy describe_callback_context() const overridegridfire::solver::CVODESolverStrategyvirtual evaluate(const NetIn &netIn) overridegridfire::solver::CVODESolverStrategyvirtual - get_stdout_logging_enabled() constgridfire::solver::CVODESolverStrategy - initialize_cvode_integration_resources(uint64_t N, size_t numSpecies, double current_time, const fourdst::composition::Composition &composition, double absTol, double relTol, double accumulatedEnergy)gridfire::solver::CVODESolverStrategyprivate - log_step_diagnostics(const CVODEUserData &user_data) constgridfire::solver::CVODESolverStrategyprivate - m_callbackgridfire::solver::CVODESolverStrategyprivate - m_configgridfire::solver::CVODESolverStrategyprivate - m_constraintsgridfire::solver::CVODESolverStrategyprivate - m_cvode_memgridfire::solver::CVODESolverStrategyprivate - m_enginegridfire::solver::NetworkSolverStrategy< DynamicEngine >protected + evaluate(const NetIn &netIn, bool displayTrigger)gridfire::solver::CVODESolverStrategy + get_stdout_logging_enabled() constgridfire::solver::CVODESolverStrategy + initialize_cvode_integration_resources(uint64_t N, size_t numSpecies, double current_time, const fourdst::composition::Composition &composition, double absTol, double relTol, double accumulatedEnergy)gridfire::solver::CVODESolverStrategyprivate + log_step_diagnostics(const CVODEUserData &user_data, bool displayJacobianStiffness) constgridfire::solver::CVODESolverStrategyprivate + m_callbackgridfire::solver::CVODESolverStrategyprivate + m_configgridfire::solver::CVODESolverStrategyprivate + m_constraintsgridfire::solver::CVODESolverStrategyprivate + m_cvode_memgridfire::solver::CVODESolverStrategyprivate m_enginegridfire::solver::NetworkSolverStrategy< DynamicEngine >protected - m_Jgridfire::solver::CVODESolverStrategyprivate - m_loggergridfire::solver::CVODESolverStrategyprivate - m_LSgridfire::solver::CVODESolverStrategyprivate - m_num_stepsgridfire::solver::CVODESolverStrategyprivate - m_stdout_logging_enabledgridfire::solver::CVODESolverStrategyprivate - m_sun_ctxgridfire::solver::CVODESolverStrategyprivate - m_Ygridfire::solver::CVODESolverStrategyprivate - m_YErrgridfire::solver::CVODESolverStrategyprivate - NetworkSolverStrategy(DynamicEngine &engine)gridfire::solver::NetworkSolverStrategy< DynamicEngine >inlineexplicit + m_enginegridfire::solver::NetworkSolverStrategy< DynamicEngine >protected + m_Jgridfire::solver::CVODESolverStrategyprivate + m_loggergridfire::solver::CVODESolverStrategyprivate + m_LSgridfire::solver::CVODESolverStrategyprivate + m_num_stepsgridfire::solver::CVODESolverStrategyprivate + m_stdout_logging_enabledgridfire::solver::CVODESolverStrategyprivate + m_sun_ctxgridfire::solver::CVODESolverStrategyprivate + m_Ygridfire::solver::CVODESolverStrategyprivate + m_YErrgridfire::solver::CVODESolverStrategyprivate NetworkSolverStrategy(DynamicEngine &engine)gridfire::solver::NetworkSolverStrategy< DynamicEngine >inlineexplicit - operator=(const CVODESolverStrategy &)=deletegridfire::solver::CVODESolverStrategy - operator=(CVODESolverStrategy &&)=deletegridfire::solver::CVODESolverStrategy - set_callback(const std::any &callback) overridegridfire::solver::CVODESolverStrategyvirtual - set_stdout_logging_enabled(const bool value)gridfire::solver::CVODESolverStrategy - TimestepCallback typedefgridfire::solver::CVODESolverStrategy - ~CVODESolverStrategy() overridegridfire::solver::CVODESolverStrategy - ~NetworkSolverStrategy()=defaultgridfire::solver::NetworkSolverStrategy< DynamicEngine >virtual + NetworkSolverStrategy(DynamicEngine &engine)gridfire::solver::NetworkSolverStrategy< DynamicEngine >inlineexplicit + operator=(const CVODESolverStrategy &)=deletegridfire::solver::CVODESolverStrategy + operator=(CVODESolverStrategy &&)=deletegridfire::solver::CVODESolverStrategy + set_callback(const std::any &callback) overridegridfire::solver::CVODESolverStrategyvirtual + set_stdout_logging_enabled(bool logging_enabled)gridfire::solver::CVODESolverStrategy + TimestepCallback typedefgridfire::solver::CVODESolverStrategy + ~CVODESolverStrategy() overridegridfire::solver::CVODESolverStrategy ~NetworkSolverStrategy()=defaultgridfire::solver::NetworkSolverStrategy< DynamicEngine >virtual + ~NetworkSolverStrategy()=defaultgridfire::solver::NetworkSolverStrategy< DynamicEngine >virtual
      diff --git a/docs/html/classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html b/docs/html/classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html index 5f24d48e..87b30092 100644 --- a/docs/html/classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html +++ b/docs/html/classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      @@ -159,15 +159,18 @@ Public Member Functions NetOut evaluate (const NetIn &netIn) override  Integrate from t=0 to netIn.tMax and return final composition and energy.
        +NetOut evaluate (const NetIn &netIn, bool displayTrigger) + Call to evaluate which will let the user control if the trigger reasoning is displayed.
      +  void set_callback (const std::any &callback) override  Install a timestep callback.
        bool get_stdout_logging_enabled () const  Whether per-step logs are printed to stdout and CVode is stepped with CV_ONE_STEP.
        -void set_stdout_logging_enabled (const bool value) - Enable/disable per-step stdout logging.
      -  +void set_stdout_logging_enabled (bool logging_enabled) + Enable/disable per-step stdout logging.
      +  std::vector< std::tuple< std::string, std::string > > describe_callback_context () const override  Schema of fields exposed to the timestep callback context.
        @@ -196,9 +199,9 @@ Private Member Functions void cleanup_cvode_resources (bool memFree)  Destroy CVODE vectors/linear algebra and optionally the CVODE memory block.
        -void log_step_diagnostics (const CVODEUserData &user_data) const - Compute and print per-component error ratios; run diagnostic helpers.
      -  +void log_step_diagnostics (const CVODEUserData &user_data, bool displayJacobianStiffness) const + Compute and print per-component error ratios; run diagnostic helpers.
      +  @@ -233,9 +236,9 @@ Private Attributes - - - + + + @@ -278,8 +281,8 @@ Additional Inherited Members
      in.composition = initialComposition;
      auto out = solver.evaluate(in);
      std::cout << "Final energy: " << out.energy << " erg/g\n";
      -
      gridfire::solver::CVODESolverStrategy
      Stiff ODE integrator backed by SUNDIALS CVODE (BDF) for network + energy.
      Definition CVODE_solver_strategy.h:77
      -
      gridfire::solver::CVODESolverStrategy::CVODESolverStrategy
      CVODESolverStrategy(DynamicEngine &engine)
      Construct the CVODE strategy and create a SUNDIALS context.
      Definition CVODE_solver_strategy.cpp:121
      +
      gridfire::solver::CVODESolverStrategy
      Stiff ODE integrator backed by SUNDIALS CVODE (BDF) for network + energy.
      Definition CVODE_solver_strategy.h:81
      +
      gridfire::solver::CVODESolverStrategy::CVODESolverStrategy
      CVODESolverStrategy(DynamicEngine &engine)
      Construct the CVODE strategy and create a SUNDIALS context.
      Definition CVODE_solver_strategy.cpp:127
      gridfire::solver
      Definition solver.h:12
      gridfire::NetIn
      Definition network.h:51
      gridfire::NetIn::density
      double density
      Density in g/cm^3.
      Definition network.h:56
      @@ -632,7 +635,7 @@ Additional Inherited Members -

      ◆ evaluate()

      +

      ◆ evaluate() [1/2]

      @@ -660,7 +663,7 @@ Additional Inherited Members
    • Repeatedly calls CVode in single-step or normal mode depending on stdout logging.
    • Wraps RHS to capture exceptions::StaleEngineTrigger as a recoverable step failure; if present after a step, it is rethrown for upstream handling.
    • Prints/collects diagnostics per step (step size, energy, solver iterations).
      • -
    • On trigger activation, rebuilds CVODE resources to reflect a changed network and reinitializes the state using the latest engine composition, preserving energy.
      • +
    • On trigger activation, rebuilds CVODE resources to reflect a changed network and reinitialized the state using the latest engine composition, preserving energy.
    • At the end, converts molar abundances to mass fractions and assembles NetOut, including derivatives of energy w.r.t. T and rho from the engine.
      • Parameters
      @@ -680,6 +683,44 @@ Additional Inherited Members

      Implements gridfire::solver::NetworkSolverStrategy< DynamicEngine >.

      +
      +
      + +

      ◆ evaluate() [2/2]

      + +
      +
      +

      Static Private Member Functions

      SUNLinearSolver m_LS = nullptr
       Dense linear solver.
       
      TimestepCallback m_callback
       Optional per-step callback.
       
      std::optional< TimestepCallback > m_callback
       Optional per-step callback.
       
      int m_num_steps = 0
       CVODE step counter (used for diagnostics and triggers).
       
      + + + + + + + + + + +
      NetOut gridfire::solver::CVODESolverStrategy::evaluate (const NetIn & netIn,
      bool displayTrigger )
      +
      + +

      Call to evaluate which will let the user control if the trigger reasoning is displayed.

      +
      Parameters
      + + + +
      netInInputs: temperature [K], density [g cm^-3], tMax [s], composition.
      displayTriggerBoolean flag to control if trigger reasoning is displayed
      +
      +
      +
      Returns
      NetOut containing final Composition, accumulated energy [erg/g], step count, and dEps/dT, dEps/dRho.
      +
      Exceptions
      + + + +
      std::runtime_errorIf any CVODE or SUNDIALS call fails (negative return codes), or if internal consistency checks fail during engine updates.
      exceptions::StaleEngineTriggerPropagated if the engine signals a stale state during RHS evaluation (captured in the wrapper then rethrown here).
      +
      +
      +
      @@ -766,8 +807,8 @@ Additional Inherited Members
      - -

      ◆ log_step_diagnostics()

      + +

      ◆ log_step_diagnostics()

      @@ -778,8 +819,12 @@ Additional Inherited Members void gridfire::solver::CVODESolverStrategy::log_step_diagnostics ( - const CVODEUserData & user_data) - const + const CVODEUserData & user_data, + + + + + bool displayJacobianStiffness ) const @@ -790,7 +835,7 @@ Additional Inherited Members

      Compute and print per-component error ratios; run diagnostic helpers.

      -

      Gathers CVODE's estimated local errors, converts the state to a Composition, and prints a sorted table of species with highest error ratios; then invokes diagnostic routines to inspect Jacobian stiffness and species balance.

      +

      Gathers CVODE's estimated local errors, converts the state to a Composition, and prints a sorted table of species with the highest error ratios; then invokes diagnostic routines to inspect Jacobian stiffness and species balance.

      @@ -885,8 +930,8 @@ Additional Inherited Members
      - -

      ◆ set_stdout_logging_enabled()

      + +

      ◆ set_stdout_logging_enabled()

      @@ -894,19 +939,25 @@ Additional Inherited Members void gridfire::solver::CVODESolverStrategy::set_stdout_logging_enabled ( - const bool value) + bool logging_enabled)

      Enable/disable per-step stdout logging.

      +
      Parameters
      + + +
      logging_enabledFlag to control if a timestep summary is written to standard output or not
      +
      +

      Member Data Documentation

      - -

      ◆ m_callback

      + +

      ◆ m_callback

      @@ -915,7 +966,7 @@ Additional Inherited Members - +
      TimestepCallback gridfire::solver::CVODESolverStrategy::m_callbackstd::optional<TimestepCallback> gridfire::solver::CVODESolverStrategy::m_callback
      diff --git a/docs/html/classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.js b/docs/html/classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.js index 2d050c92..449049d1 100644 --- a/docs/html/classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.js +++ b/docs/html/classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.js @@ -13,14 +13,15 @@ var classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy = [ "cvode_rhs_wrapper", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a14c620ef75749c8ef3dfdb84132e5620", null ], [ "describe_callback_context", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a5dfb7a2ce0008d41dee4aa596a4e1ce4", null ], [ "evaluate", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ab8224d205ea3a28d9c723631c2f00b53", null ], + [ "evaluate", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a167e44c002243314aa58c84715490804", null ], [ "get_stdout_logging_enabled", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a87b7b39e2a15cc30b118c8e6fda9a1a6", null ], [ "initialize_cvode_integration_resources", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#afc6c55237df4af240c4c842305085d91", null ], - [ "log_step_diagnostics", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a53c14f504e5b7827b4bab4a0a7a13341", null ], + [ "log_step_diagnostics", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ae52199012091f7179bf95ae7f492fbe1", null ], [ "operator=", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#af500df838024c82724eaf7fe1cb9b8e8", null ], [ "operator=", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ad26879fafcee9ecb21cc7c5ac0db1692", null ], [ "set_callback", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a77638ef3d2279009e5a57bbd3f0eb63b", null ], - [ "set_stdout_logging_enabled", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a46dacb6eb075f2aadac0e56972deeaa3", null ], - [ "m_callback", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a50c7b4e1ff2c88ce424c745478414e30", null ], + [ "set_stdout_logging_enabled", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a9857665a1198e24aac6add02afc6e306", null ], + [ "m_callback", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#aa8fb7a0b39e6bb7b97a4a98422f06482", null ], [ "m_config", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a202fe9e6499aac5f6813e036ee4ed2d5", null ], [ "m_constraints", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a50d8f309ca897fa83b16db0a1701b339", null ], [ "m_cvode_mem", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#ab5a8fa55e36685cac50c1dbdd8dbfa57", null ], diff --git a/docs/html/classgridfire_1_1solver_1_1_network_solver_strategy-members.html b/docs/html/classgridfire_1_1solver_1_1_network_solver_strategy-members.html index efcb0060..a84602b9 100644 --- a/docs/html/classgridfire_1_1solver_1_1_network_solver_strategy-members.html +++ b/docs/html/classgridfire_1_1solver_1_1_network_solver_strategy-members.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      diff --git a/docs/html/classgridfire_1_1solver_1_1_network_solver_strategy.html b/docs/html/classgridfire_1_1solver_1_1_network_solver_strategy.html index f337755e..6ebd9868 100644 --- a/docs/html/classgridfire_1_1solver_1_1_network_solver_strategy.html +++ b/docs/html/classgridfire_1_1solver_1_1_network_solver_strategy.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      diff --git a/docs/html/classgridfire_1_1solver_1_1_solver_context_base-members.html b/docs/html/classgridfire_1_1solver_1_1_solver_context_base-members.html new file mode 100644 index 00000000..55ff07a9 --- /dev/null +++ b/docs/html/classgridfire_1_1solver_1_1_solver_context_base-members.html @@ -0,0 +1,119 @@ + + + + + + + +GridFire: Member List + + + + + + + + + + + + + + + + + +
      +
      + + + + + + +
      +
      GridFire v0.7.0-alpha +
      +
      General Purpose Nuclear Network
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      gridfire::solver::SolverContextBase Member List
      +
      +
      + +

      This is the complete list of members for gridfire::solver::SolverContextBase, including all inherited members.

      + + + +
      describe() const =0gridfire::solver::SolverContextBasepure virtual
      ~SolverContextBase()=defaultgridfire::solver::SolverContextBasevirtual
      +
      + + + + diff --git a/docs/html/classgridfire_1_1solver_1_1_solver_context_base.html b/docs/html/classgridfire_1_1solver_1_1_solver_context_base.html new file mode 100644 index 00000000..3bbd0c77 --- /dev/null +++ b/docs/html/classgridfire_1_1solver_1_1_solver_context_base.html @@ -0,0 +1,206 @@ + + + + + + + +GridFire: gridfire::solver::SolverContextBase Struct Reference + + + + + + + + + + + + + + + + + +
      +
      + + + + + + +
      +
      GridFire v0.7.0-alpha +
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      General Purpose Nuclear Network
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      +Public Member Functions | +List of all members
      +
      gridfire::solver::SolverContextBase Struct Referenceabstract
      +
      +
      + +

      Base class for solver callback contexts. + More...

      + +

      #include <solver.h>

      +
      +Inheritance diagram for gridfire::solver::SolverContextBase:
      +
      +
      + + +PySolverContextBase +gridfire::solver::CVODESolverStrategy::TimestepContext + +
      + + + + + + + +

      +Public Member Functions

      virtual ~SolverContextBase ()=default
       
      virtual std::vector< std::tuple< std::string, std::string > > describe () const =0
       Describe the context for callback functions.
       
      +

      Detailed Description

      +

      Base class for solver callback contexts.

      +

      This struct serves as a base class for contexts that can be papubl;ssed to solver callbacks, it enforces that derived classes implement a describe method that returns a vector of tuples describing the context that a callback will receive when called.

      +

      Constructor & Destructor Documentation

      + +

      ◆ ~SolverContextBase()

      + +
      +
      + + + + + +
      + + + + + + + +
      virtual gridfire::solver::SolverContextBase::~SolverContextBase ()
      +       		+virtualdefault
      +
      + +
      +
      +

      Member Function Documentation

      + +

      ◆ describe()

      + +
      +
      + + + + + +
      + + + + + + + +
      virtual std::vector< std::tuple< std::string, std::string > > gridfire::solver::SolverContextBase::describe () const
      +       		+nodiscardpure virtual
      +
      + +

      Describe the context for callback functions.

      +
      Returns
      A vector of tuples, each containing a string for the parameters name and a string for its type.
      +

      This method should be overridden by derived classes to provide a description of the context that will be passed to the callback function. The intent of this method is that an end user can investigate the context that will be passed to the callback function, and use this information to craft their own callback function.

      + +

      Implemented in gridfire::solver::CVODESolverStrategy::TimestepContext, and PySolverContextBase.

      + +
      +
      +
      The documentation for this struct was generated from the following file:
        +
      • src/include/gridfire/solver/solver.h
        • +
      +
      +
      + + + + diff --git a/docs/html/classgridfire_1_1solver_1_1_solver_context_base.js b/docs/html/classgridfire_1_1solver_1_1_solver_context_base.js new file mode 100644 index 00000000..88d06f02 --- /dev/null +++ b/docs/html/classgridfire_1_1solver_1_1_solver_context_base.js @@ -0,0 +1,5 @@ +var classgridfire_1_1solver_1_1_solver_context_base = +[ + [ "~SolverContextBase", "classgridfire_1_1solver_1_1_solver_context_base.html#ab1abf9e5ff7f53a6cebe5e00ea5fc0c8", null ], + [ "describe", "classgridfire_1_1solver_1_1_solver_context_base.html#a9cbef3cabc8524e542613ee50d8860c6", null ] +]; \ No newline at end of file diff --git a/docs/html/classgridfire_1_1solver_1_1_solver_context_base.png b/docs/html/classgridfire_1_1solver_1_1_solver_context_base.png new file mode 100644 index 00000000..362d5fa8 Binary files /dev/null and b/docs/html/classgridfire_1_1solver_1_1_solver_context_base.png differ diff --git a/docs/html/classgridfire_1_1trigger_1_1_and_trigger-members.html b/docs/html/classgridfire_1_1trigger_1_1_and_trigger-members.html index 71c7a2fd..ebaf3a8f 100644 --- a/docs/html/classgridfire_1_1trigger_1_1_and_trigger-members.html +++ b/docs/html/classgridfire_1_1trigger_1_1_and_trigger-members.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      @@ -113,11 +113,13 @@ $(function(){initNavTree('classgridfire_1_1trigger_1_1_and_trigger.html',''); in m_hitsgridfire::trigger::AndTrigger< TriggerContextStruct >mutableprivate m_missesgridfire::trigger::AndTrigger< TriggerContextStruct >mutableprivate m_resetsgridfire::trigger::AndTrigger< TriggerContextStruct >mutableprivate - m_updatesgridfire::trigger::AndTrigger< TriggerContextStruct >mutableprivate - name() const overridegridfire::trigger::AndTrigger< TriggerContextStruct >virtual - numMisses() const overridegridfire::trigger::AndTrigger< TriggerContextStruct >virtual - numTriggers() const overridegridfire::trigger::AndTrigger< TriggerContextStruct >virtual - reset() overridegridfire::trigger::AndTrigger< TriggerContextStruct >virtual + m_stepsgridfire::trigger::AndTrigger< TriggerContextStruct >mutableprivate + m_updatesgridfire::trigger::AndTrigger< TriggerContextStruct >mutableprivate + name() const overridegridfire::trigger::AndTrigger< TriggerContextStruct >virtual + numMisses() const overridegridfire::trigger::AndTrigger< TriggerContextStruct >virtual + numTriggers() const overridegridfire::trigger::AndTrigger< TriggerContextStruct >virtual + reset() overridegridfire::trigger::AndTrigger< TriggerContextStruct >virtual + step(const TriggerContextStruct &ctx) overridegridfire::trigger::AndTrigger< TriggerContextStruct >virtual update(const TriggerContextStruct &ctx) overridegridfire::trigger::AndTrigger< TriggerContextStruct >virtual why(const TriggerContextStruct &ctx) const overridegridfire::trigger::AndTrigger< TriggerContextStruct >virtual ~AndTrigger() override=defaultgridfire::trigger::AndTrigger< TriggerContextStruct > diff --git a/docs/html/classgridfire_1_1trigger_1_1_and_trigger.html b/docs/html/classgridfire_1_1trigger_1_1_and_trigger.html index fce467f9..e0f09280 100644 --- a/docs/html/classgridfire_1_1trigger_1_1_and_trigger.html +++ b/docs/html/classgridfire_1_1trigger_1_1_and_trigger.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      @@ -135,6 +135,9 @@ Public Member Functions void update (const TriggerContextStruct &ctx) override  Update both sub-triggers and increment update counter.
        +void step (const TriggerContextStruct &ctx) override + similar to update but intended to be run on every step not just those where the trigger triggered
      +  void reset () override  Reset both sub-triggers and local counters.
        @@ -172,6 +175,8 @@ Private Attributes   size_t m_resets = 0   +size_t m_steps = 0 + 

      Detailed Description

      template<typename TriggerContextStruct>
      @@ -180,7 +185,7 @@ class gridfire::trigger::AndTrigger< TriggerContextStruct >

      Logica

      Counters (mutable) are incremented inside const check(): m_hits on true; m_misses on false; m_updates on each update(); m_resets on reset().

      Example
      auto t = AndTrigger(ctxA, ctxB);
      if (t.check(ctx)) { (void)ctx; }
      -
      gridfire::trigger::AndTrigger::AndTrigger
      AndTrigger(std::unique_ptr< Trigger< TriggerContextStruct > > A, std::unique_ptr< Trigger< TriggerContextStruct > > B)
      Construct AND from two triggers (ownership transferred).
      Definition trigger_logical.h:196
      +
      gridfire::trigger::AndTrigger::AndTrigger
      AndTrigger(std::unique_ptr< Trigger< TriggerContextStruct > > A, std::unique_ptr< Trigger< TriggerContextStruct > > B)
      Construct AND from two triggers (ownership transferred).
      Definition trigger_logical.h:204

      Constructor & Destructor Documentation

      @@ -420,6 +425,43 @@ template<typename TriggerContextStruct>

      Implements gridfire::trigger::Trigger< TriggerContextStruct >.

      +
      +
      + +

      ◆ step()

      + +
      +
      +
      +template<typename TriggerContextStruct>
      + + + + + +
      + + + + + + + +
      void gridfire::trigger::AndTrigger< TriggerContextStruct >::step (const TriggerContextStruct & ctx)
      +       		+overridevirtual
      +
      + +

      similar to update but intended to be run on every step not just those where the trigger triggered

      +
      Parameters
      + + +
      ctxContext snapshot used to update state.
      +
      +
      + +

      Implements gridfire::trigger::Trigger< TriggerContextStruct >.

      +
      @@ -603,6 +645,30 @@ template<typename TriggerContextStruct>
      +
      +
      + +

      ◆ m_steps

      + +
      +
      +
      +template<typename TriggerContextStruct>
      + + + + + +
      + + + + +
      size_t gridfire::trigger::AndTrigger< TriggerContextStruct >::m_steps = 0
      +       		+mutableprivate
      +
      +
      diff --git a/docs/html/classgridfire_1_1trigger_1_1_and_trigger.js b/docs/html/classgridfire_1_1trigger_1_1_and_trigger.js index ce645271..6e1f773d 100644 --- a/docs/html/classgridfire_1_1trigger_1_1_and_trigger.js +++ b/docs/html/classgridfire_1_1trigger_1_1_and_trigger.js @@ -8,6 +8,7 @@ var classgridfire_1_1trigger_1_1_and_trigger = [ "numMisses", "classgridfire_1_1trigger_1_1_and_trigger.html#addfd61f8cb234881f535fb8f4d618d74", null ], [ "numTriggers", "classgridfire_1_1trigger_1_1_and_trigger.html#afffb4281569963183d7db3ed1568eb3a", null ], [ "reset", "classgridfire_1_1trigger_1_1_and_trigger.html#a2436d8643911ade907e03fb29531ceaa", null ], + [ "step", "classgridfire_1_1trigger_1_1_and_trigger.html#a8e743e8ebe71f9ded835177db6fad908", null ], [ "update", "classgridfire_1_1trigger_1_1_and_trigger.html#a62f7dbbcf0554caa68e3d778580b3c1d", null ], [ "why", "classgridfire_1_1trigger_1_1_and_trigger.html#a01033721e8f5d90483d65c904399cf96", null ], [ "m_A", "classgridfire_1_1trigger_1_1_and_trigger.html#a99be74b126d50c15d21c0724d933af87", null ], @@ -15,5 +16,6 @@ var classgridfire_1_1trigger_1_1_and_trigger = [ "m_hits", "classgridfire_1_1trigger_1_1_and_trigger.html#a43e6a9c01b163ab92a0b413bfba52ef5", null ], [ "m_misses", "classgridfire_1_1trigger_1_1_and_trigger.html#a1714656e907edfcba2d354ff5d7c9ceb", null ], [ "m_resets", "classgridfire_1_1trigger_1_1_and_trigger.html#ae3ff88ddb15d04e798fc03c6c941e312", null ], + [ "m_steps", "classgridfire_1_1trigger_1_1_and_trigger.html#afd8d79e83f83473f0df64e96b63aa1f1", null ], [ "m_updates", "classgridfire_1_1trigger_1_1_and_trigger.html#a7f88c1139e1b05baed44614104d601b4", null ] ]; \ No newline at end of file diff --git a/docs/html/classgridfire_1_1trigger_1_1_every_nth_trigger-members.html b/docs/html/classgridfire_1_1trigger_1_1_every_nth_trigger-members.html index 38550b26..5f0901c9 100644 --- a/docs/html/classgridfire_1_1trigger_1_1_every_nth_trigger-members.html +++ b/docs/html/classgridfire_1_1trigger_1_1_every_nth_trigger-members.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      @@ -114,11 +114,13 @@ $(function(){initNavTree('classgridfire_1_1trigger_1_1_every_nth_trigger.html',' m_missesgridfire::trigger::EveryNthTrigger< TriggerContextStruct >mutableprivate m_Ngridfire::trigger::EveryNthTrigger< TriggerContextStruct >private m_resetsgridfire::trigger::EveryNthTrigger< TriggerContextStruct >mutableprivate - m_updatesgridfire::trigger::EveryNthTrigger< TriggerContextStruct >mutableprivate - name() const overridegridfire::trigger::EveryNthTrigger< TriggerContextStruct >virtual - numMisses() const overridegridfire::trigger::EveryNthTrigger< TriggerContextStruct >virtual - numTriggers() const overridegridfire::trigger::EveryNthTrigger< TriggerContextStruct >virtual - reset() overridegridfire::trigger::EveryNthTrigger< TriggerContextStruct >virtual + m_stepsgridfire::trigger::EveryNthTrigger< TriggerContextStruct >mutableprivate + m_updatesgridfire::trigger::EveryNthTrigger< TriggerContextStruct >mutableprivate + name() const overridegridfire::trigger::EveryNthTrigger< TriggerContextStruct >virtual + numMisses() const overridegridfire::trigger::EveryNthTrigger< TriggerContextStruct >virtual + numTriggers() const overridegridfire::trigger::EveryNthTrigger< TriggerContextStruct >virtual + reset() overridegridfire::trigger::EveryNthTrigger< TriggerContextStruct >virtual + step(const TriggerContextStruct &ctx) overridegridfire::trigger::EveryNthTrigger< TriggerContextStruct >virtual update(const TriggerContextStruct &ctx) overridegridfire::trigger::EveryNthTrigger< TriggerContextStruct >virtual why(const TriggerContextStruct &ctx) const overridegridfire::trigger::EveryNthTrigger< TriggerContextStruct >virtual ~EveryNthTrigger() override=defaultgridfire::trigger::EveryNthTrigger< TriggerContextStruct > diff --git a/docs/html/classgridfire_1_1trigger_1_1_every_nth_trigger.html b/docs/html/classgridfire_1_1trigger_1_1_every_nth_trigger.html index 29112ca8..8b438b95 100644 --- a/docs/html/classgridfire_1_1trigger_1_1_every_nth_trigger.html +++ b/docs/html/classgridfire_1_1trigger_1_1_every_nth_trigger.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      @@ -134,6 +134,9 @@ Public Member Functions void update (const TriggerContextStruct &ctx) override  Update any internal state with the given context (e.g., counters, windows).
        +void step (const TriggerContextStruct &ctx) override + similar to update but intended to be run on every step not just those where the trigger triggered
      +  void reset () override  Reset internal state and diagnostics counters.
        @@ -173,6 +176,8 @@ Private Attributes   size_t m_resets = 0   +size_t m_steps = 0 + 

      Detailed Description

      template<typename TriggerContextStruct>
      @@ -435,6 +440,43 @@ template<typename TriggerContextStruct>

      Implements gridfire::trigger::Trigger< TriggerContextStruct >.

      +
      +
      + +

      ◆ step()

      + +
      +
      +
      +template<typename TriggerContextStruct>
      + + + + + +
      + + + + + + + +
      void gridfire::trigger::EveryNthTrigger< TriggerContextStruct >::step (const TriggerContextStruct & ctx)
      +       		+overridevirtual
      +
      + +

      similar to update but intended to be run on every step not just those where the trigger triggered

      +
      Parameters
      + + +
      ctxContext snapshot used to update state.
      +
      +
      + +

      Implements gridfire::trigger::Trigger< TriggerContextStruct >.

      +
      @@ -655,6 +697,30 @@ template<typename TriggerContextStruct>
      +
      +
      + +

      ◆ m_steps

      + +
      +
      +
      +template<typename TriggerContextStruct>
      + + + + + +
      + + + + +
      size_t gridfire::trigger::EveryNthTrigger< TriggerContextStruct >::m_steps = 0
      +       		+mutableprivate
      +
      +
      diff --git a/docs/html/classgridfire_1_1trigger_1_1_every_nth_trigger.js b/docs/html/classgridfire_1_1trigger_1_1_every_nth_trigger.js index 166c3dba..36be0bd6 100644 --- a/docs/html/classgridfire_1_1trigger_1_1_every_nth_trigger.js +++ b/docs/html/classgridfire_1_1trigger_1_1_every_nth_trigger.js @@ -8,6 +8,7 @@ var classgridfire_1_1trigger_1_1_every_nth_trigger = [ "numMisses", "classgridfire_1_1trigger_1_1_every_nth_trigger.html#ae7776f4a526db3245e64a74a3b0172d3", null ], [ "numTriggers", "classgridfire_1_1trigger_1_1_every_nth_trigger.html#a7e5568c9d7799b7f80ad0d3efe2cd143", null ], [ "reset", "classgridfire_1_1trigger_1_1_every_nth_trigger.html#abf218d255bde157540b51cd6a54f6eb1", null ], + [ "step", "classgridfire_1_1trigger_1_1_every_nth_trigger.html#a26d0aca39087a1f69e96e0701ca83f81", null ], [ "update", "classgridfire_1_1trigger_1_1_every_nth_trigger.html#a0dd783afab7ef6005f0241f9de7b31f6", null ], [ "why", "classgridfire_1_1trigger_1_1_every_nth_trigger.html#a3bf0d69122f801deca4b62db47262d9b", null ], [ "m_A", "classgridfire_1_1trigger_1_1_every_nth_trigger.html#a27f1fd8c8a93576f83a4f3320469c83a", null ], @@ -16,5 +17,6 @@ var classgridfire_1_1trigger_1_1_every_nth_trigger = [ "m_misses", "classgridfire_1_1trigger_1_1_every_nth_trigger.html#a0a5c2c5aedc779c1535d3839c6a6596e", null ], [ "m_N", "classgridfire_1_1trigger_1_1_every_nth_trigger.html#a652ba8d1ac36b9713f426eedf2b1ead0", null ], [ "m_resets", "classgridfire_1_1trigger_1_1_every_nth_trigger.html#a87b6e54f3a0536d20709d7e746ec575d", null ], + [ "m_steps", "classgridfire_1_1trigger_1_1_every_nth_trigger.html#acefe02899ade9aa595e04f3ec34f251a", null ], [ "m_updates", "classgridfire_1_1trigger_1_1_every_nth_trigger.html#ab0a33f49be02d34b27f75edf75dbc06d", null ] ]; \ No newline at end of file diff --git a/docs/html/classgridfire_1_1trigger_1_1_logical_trigger-members.html b/docs/html/classgridfire_1_1trigger_1_1_logical_trigger-members.html index 3d8d7d55..a9b1fb93 100644 --- a/docs/html/classgridfire_1_1trigger_1_1_logical_trigger-members.html +++ b/docs/html/classgridfire_1_1trigger_1_1_logical_trigger-members.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      @@ -111,9 +111,10 @@ $(function(){initNavTree('classgridfire_1_1trigger_1_1_logical_trigger.html','') numMisses() const =0gridfire::trigger::Trigger< TriggerContextStruct >pure virtual numTriggers() const =0gridfire::trigger::Trigger< TriggerContextStruct >pure virtual reset()=0gridfire::trigger::Trigger< TriggerContextStruct >pure virtual - update(const TriggerContextStruct &ctx)=0gridfire::trigger::Trigger< TriggerContextStruct >pure virtual - why(const TriggerContextStruct &ctx) const =0gridfire::trigger::Trigger< TriggerContextStruct >pure virtual - ~Trigger()=defaultgridfire::trigger::Trigger< TriggerContextStruct >virtual + step(const TriggerContextStruct &ctx)=0gridfire::trigger::Trigger< TriggerContextStruct >pure virtual + update(const TriggerContextStruct &ctx)=0gridfire::trigger::Trigger< TriggerContextStruct >pure virtual + why(const TriggerContextStruct &ctx) const =0gridfire::trigger::Trigger< TriggerContextStruct >pure virtual + ~Trigger()=defaultgridfire::trigger::Trigger< TriggerContextStruct >virtual
      diff --git a/docs/html/classgridfire_1_1trigger_1_1_logical_trigger.html b/docs/html/classgridfire_1_1trigger_1_1_logical_trigger.html index 70778799..062ae96c 100644 --- a/docs/html/classgridfire_1_1trigger_1_1_logical_trigger.html +++ b/docs/html/classgridfire_1_1trigger_1_1_logical_trigger.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      @@ -132,6 +132,9 @@ Additional Inherited Members virtual void update (const TriggerContextStruct &ctx)=0  Update any internal state with the given context (e.g., counters, windows).
        +virtual void step (const TriggerContextStruct &ctx)=0 + similar to update but intended to be run on every step not just those where the trigger triggered
      +  virtual void reset ()=0  Reset internal state and diagnostics counters.
        diff --git a/docs/html/classgridfire_1_1trigger_1_1_not_trigger-members.html b/docs/html/classgridfire_1_1trigger_1_1_not_trigger-members.html index 27e51025..46560a74 100644 --- a/docs/html/classgridfire_1_1trigger_1_1_not_trigger-members.html +++ b/docs/html/classgridfire_1_1trigger_1_1_not_trigger-members.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      @@ -111,12 +111,14 @@ $(function(){initNavTree('classgridfire_1_1trigger_1_1_not_trigger.html',''); in m_hitsgridfire::trigger::NotTrigger< TriggerContextStruct >mutableprivate m_missesgridfire::trigger::NotTrigger< TriggerContextStruct >mutableprivate m_resetsgridfire::trigger::NotTrigger< TriggerContextStruct >mutableprivate - m_updatesgridfire::trigger::NotTrigger< TriggerContextStruct >mutableprivate - name() const overridegridfire::trigger::NotTrigger< TriggerContextStruct >virtual - NotTrigger(std::unique_ptr< Trigger< TriggerContextStruct > > A)gridfire::trigger::NotTrigger< TriggerContextStruct >explicit - numMisses() const overridegridfire::trigger::NotTrigger< TriggerContextStruct >virtual - numTriggers() const overridegridfire::trigger::NotTrigger< TriggerContextStruct >virtual - reset() overridegridfire::trigger::NotTrigger< TriggerContextStruct >virtual + m_stepsgridfire::trigger::NotTrigger< TriggerContextStruct >mutableprivate + m_updatesgridfire::trigger::NotTrigger< TriggerContextStruct >mutableprivate + name() const overridegridfire::trigger::NotTrigger< TriggerContextStruct >virtual + NotTrigger(std::unique_ptr< Trigger< TriggerContextStruct > > A)gridfire::trigger::NotTrigger< TriggerContextStruct >explicit + numMisses() const overridegridfire::trigger::NotTrigger< TriggerContextStruct >virtual + numTriggers() const overridegridfire::trigger::NotTrigger< TriggerContextStruct >virtual + reset() overridegridfire::trigger::NotTrigger< TriggerContextStruct >virtual + step(const TriggerContextStruct &ctx) overridegridfire::trigger::NotTrigger< TriggerContextStruct >virtual update(const TriggerContextStruct &ctx) overridegridfire::trigger::NotTrigger< TriggerContextStruct >virtual why(const TriggerContextStruct &ctx) const overridegridfire::trigger::NotTrigger< TriggerContextStruct >virtual ~NotTrigger() override=defaultgridfire::trigger::NotTrigger< TriggerContextStruct > diff --git a/docs/html/classgridfire_1_1trigger_1_1_not_trigger.html b/docs/html/classgridfire_1_1trigger_1_1_not_trigger.html index 8959a508..4d7e1eeb 100644 --- a/docs/html/classgridfire_1_1trigger_1_1_not_trigger.html +++ b/docs/html/classgridfire_1_1trigger_1_1_not_trigger.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      @@ -134,6 +134,9 @@ Public Member Functions void update (const TriggerContextStruct &ctx) override  Update any internal state with the given context (e.g., counters, windows).
        +void step (const TriggerContextStruct &ctx) override + similar to update but intended to be run on every step not just those where the trigger triggered
      +  void reset () override  Reset internal state and diagnostics counters.
        @@ -169,6 +172,8 @@ Private Attributes   size_t m_resets = 0   +size_t m_steps = 0 + 

      Detailed Description

      template<typename TriggerContextStruct>
      @@ -421,6 +426,43 @@ template<typename TriggerContextStruct>

      Implements gridfire::trigger::Trigger< TriggerContextStruct >.

      +
      +
      + +

      ◆ step()

      + +
      +
      +
      +template<typename TriggerContextStruct>
      + + + + + +
      + + + + + + + +
      void gridfire::trigger::NotTrigger< TriggerContextStruct >::step (const TriggerContextStruct & ctx)
      +       		+overridevirtual
      +
      + +

      similar to update but intended to be run on every step not just those where the trigger triggered

      +
      Parameters
      + + +
      ctxContext snapshot used to update state.
      +
      +
      + +

      Implements gridfire::trigger::Trigger< TriggerContextStruct >.

      +
      @@ -593,6 +635,30 @@ template<typename TriggerContextStruct>
      +
      +
      + +

      ◆ m_steps

      + +
      +
      +
      +template<typename TriggerContextStruct>
      + + + + + +
      + + + + +
      size_t gridfire::trigger::NotTrigger< TriggerContextStruct >::m_steps = 0
      +       		+mutableprivate
      +
      +
      diff --git a/docs/html/classgridfire_1_1trigger_1_1_not_trigger.js b/docs/html/classgridfire_1_1trigger_1_1_not_trigger.js index 4874e0fb..f5be4fd8 100644 --- a/docs/html/classgridfire_1_1trigger_1_1_not_trigger.js +++ b/docs/html/classgridfire_1_1trigger_1_1_not_trigger.js @@ -8,11 +8,13 @@ var classgridfire_1_1trigger_1_1_not_trigger = [ "numMisses", "classgridfire_1_1trigger_1_1_not_trigger.html#a2f9b0d6a6ac54f6371c5a208c06826ea", null ], [ "numTriggers", "classgridfire_1_1trigger_1_1_not_trigger.html#ae2d27d72af9e1fbf711a58e4583b43a3", null ], [ "reset", "classgridfire_1_1trigger_1_1_not_trigger.html#afe337517b77e5433d92ded3a64565141", null ], + [ "step", "classgridfire_1_1trigger_1_1_not_trigger.html#a5096cb7e70ea357f28e1b9fc8301c793", null ], [ "update", "classgridfire_1_1trigger_1_1_not_trigger.html#a846432abf33c7602af0fbb5475c0ad32", null ], [ "why", "classgridfire_1_1trigger_1_1_not_trigger.html#abfb3eb7befba646ce9f11f36a63750ae", null ], [ "m_A", "classgridfire_1_1trigger_1_1_not_trigger.html#a0d7818e59a8d86e86053bcb6d5d7d2b8", null ], [ "m_hits", "classgridfire_1_1trigger_1_1_not_trigger.html#a86404f57e0e0683fc56e0e49321e5e3b", null ], [ "m_misses", "classgridfire_1_1trigger_1_1_not_trigger.html#aa1253080cd57cdf0be6780773ce6c73c", null ], [ "m_resets", "classgridfire_1_1trigger_1_1_not_trigger.html#adb9c36fa46a30c28e68c59a7d3bd825d", null ], + [ "m_steps", "classgridfire_1_1trigger_1_1_not_trigger.html#a2e1e78f3bf9fe0edcb9094c778826629", null ], [ "m_updates", "classgridfire_1_1trigger_1_1_not_trigger.html#ae4830ed152643770b0888b040475b000", null ] ]; \ No newline at end of file diff --git a/docs/html/classgridfire_1_1trigger_1_1_or_trigger-members.html b/docs/html/classgridfire_1_1trigger_1_1_or_trigger-members.html index f5b5d3c2..8992e432 100644 --- a/docs/html/classgridfire_1_1trigger_1_1_or_trigger-members.html +++ b/docs/html/classgridfire_1_1trigger_1_1_or_trigger-members.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      @@ -112,12 +112,14 @@ $(function(){initNavTree('classgridfire_1_1trigger_1_1_or_trigger.html',''); ini m_hitsgridfire::trigger::OrTrigger< TriggerContextStruct >mutableprivate m_missesgridfire::trigger::OrTrigger< TriggerContextStruct >mutableprivate m_resetsgridfire::trigger::OrTrigger< TriggerContextStruct >mutableprivate - m_updatesgridfire::trigger::OrTrigger< TriggerContextStruct >mutableprivate - name() const overridegridfire::trigger::OrTrigger< TriggerContextStruct >virtual - numMisses() const overridegridfire::trigger::OrTrigger< TriggerContextStruct >virtual - numTriggers() const overridegridfire::trigger::OrTrigger< TriggerContextStruct >virtual - OrTrigger(std::unique_ptr< Trigger< TriggerContextStruct > > A, std::unique_ptr< Trigger< TriggerContextStruct > > B)gridfire::trigger::OrTrigger< TriggerContextStruct > - reset() overridegridfire::trigger::OrTrigger< TriggerContextStruct >virtual + m_stepsgridfire::trigger::OrTrigger< TriggerContextStruct >mutableprivate + m_updatesgridfire::trigger::OrTrigger< TriggerContextStruct >mutableprivate + name() const overridegridfire::trigger::OrTrigger< TriggerContextStruct >virtual + numMisses() const overridegridfire::trigger::OrTrigger< TriggerContextStruct >virtual + numTriggers() const overridegridfire::trigger::OrTrigger< TriggerContextStruct >virtual + OrTrigger(std::unique_ptr< Trigger< TriggerContextStruct > > A, std::unique_ptr< Trigger< TriggerContextStruct > > B)gridfire::trigger::OrTrigger< TriggerContextStruct > + reset() overridegridfire::trigger::OrTrigger< TriggerContextStruct >virtual + step(const TriggerContextStruct &ctx) overridegridfire::trigger::OrTrigger< TriggerContextStruct >virtual update(const TriggerContextStruct &ctx) overridegridfire::trigger::OrTrigger< TriggerContextStruct >virtual why(const TriggerContextStruct &ctx) const overridegridfire::trigger::OrTrigger< TriggerContextStruct >virtual ~OrTrigger() override=defaultgridfire::trigger::OrTrigger< TriggerContextStruct > diff --git a/docs/html/classgridfire_1_1trigger_1_1_or_trigger.html b/docs/html/classgridfire_1_1trigger_1_1_or_trigger.html index bee700f1..d6f10644 100644 --- a/docs/html/classgridfire_1_1trigger_1_1_or_trigger.html +++ b/docs/html/classgridfire_1_1trigger_1_1_or_trigger.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      @@ -134,6 +134,9 @@ Public Member Functions void update (const TriggerContextStruct &ctx) override  Update any internal state with the given context (e.g., counters, windows).
        +void step (const TriggerContextStruct &ctx) override + similar to update but intended to be run on every step not just those where the trigger triggered
      +  void reset () override  Reset internal state and diagnostics counters.
        @@ -171,6 +174,8 @@ Private Attributes   size_t m_resets = 0   +size_t m_steps = 0 + 

      Detailed Description

      template<typename TriggerContextStruct>
      @@ -419,6 +424,43 @@ template<typename TriggerContextStruct>

      Implements gridfire::trigger::Trigger< TriggerContextStruct >.

      +
      +
      + +

      ◆ step()

      + +
      +
      +
      +template<typename TriggerContextStruct>
      + + + + + +
      + + + + + + + +
      void gridfire::trigger::OrTrigger< TriggerContextStruct >::step (const TriggerContextStruct & ctx)
      +       		+overridevirtual
      +
      + +

      similar to update but intended to be run on every step not just those where the trigger triggered

      +
      Parameters
      + + +
      ctxContext snapshot used to update state.
      +
      +
      + +

      Implements gridfire::trigger::Trigger< TriggerContextStruct >.

      +
      @@ -615,6 +657,30 @@ template<typename TriggerContextStruct>
      +
      +
      + +

      ◆ m_steps

      + +
      +
      +
      +template<typename TriggerContextStruct>
      + + + + + +
      + + + + +
      size_t gridfire::trigger::OrTrigger< TriggerContextStruct >::m_steps = 0
      +       		+mutableprivate
      +
      +
      diff --git a/docs/html/classgridfire_1_1trigger_1_1_or_trigger.js b/docs/html/classgridfire_1_1trigger_1_1_or_trigger.js index 9d055d1a..95ee591f 100644 --- a/docs/html/classgridfire_1_1trigger_1_1_or_trigger.js +++ b/docs/html/classgridfire_1_1trigger_1_1_or_trigger.js @@ -8,6 +8,7 @@ var classgridfire_1_1trigger_1_1_or_trigger = [ "numMisses", "classgridfire_1_1trigger_1_1_or_trigger.html#a0b3a7f45604dbb27e832d9559dd20997", null ], [ "numTriggers", "classgridfire_1_1trigger_1_1_or_trigger.html#afc7d3eae8306ee383d76997ac3803327", null ], [ "reset", "classgridfire_1_1trigger_1_1_or_trigger.html#ab42043e55c81bac5d3f981bc139579de", null ], + [ "step", "classgridfire_1_1trigger_1_1_or_trigger.html#a95a801aafb5aaa9a22566ebf722a1150", null ], [ "update", "classgridfire_1_1trigger_1_1_or_trigger.html#a775dac97d109c5fcd5c0287ca98f308c", null ], [ "why", "classgridfire_1_1trigger_1_1_or_trigger.html#a7bca0da16353f4b04a2f40fb29c07922", null ], [ "m_A", "classgridfire_1_1trigger_1_1_or_trigger.html#a6da04b5b15371f7087be03bb337dbdd6", null ], @@ -15,5 +16,6 @@ var classgridfire_1_1trigger_1_1_or_trigger = [ "m_hits", "classgridfire_1_1trigger_1_1_or_trigger.html#a35d519d5266c68b696b779b275574ebf", null ], [ "m_misses", "classgridfire_1_1trigger_1_1_or_trigger.html#ae72e6e9f1fbfbd11fbfe9aa6d4ff5a3b", null ], [ "m_resets", "classgridfire_1_1trigger_1_1_or_trigger.html#adc6f560d9199455ba98d85eadfe02847", null ], + [ "m_steps", "classgridfire_1_1trigger_1_1_or_trigger.html#a596db4a92ebf789cea1c431d3d2220c7", null ], [ "m_updates", "classgridfire_1_1trigger_1_1_or_trigger.html#af595a5daab0f5b3ffc450c6de6737517", null ] ]; \ No newline at end of file diff --git a/docs/html/classgridfire_1_1trigger_1_1_trigger-members.html b/docs/html/classgridfire_1_1trigger_1_1_trigger-members.html index 348c6a70..058b3b17 100644 --- a/docs/html/classgridfire_1_1trigger_1_1_trigger-members.html +++ b/docs/html/classgridfire_1_1trigger_1_1_trigger-members.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      @@ -111,9 +111,10 @@ $(function(){initNavTree('classgridfire_1_1trigger_1_1_trigger.html',''); initRe numMisses() const =0gridfire::trigger::Trigger< TriggerContextStruct >pure virtual numTriggers() const =0gridfire::trigger::Trigger< TriggerContextStruct >pure virtual reset()=0gridfire::trigger::Trigger< TriggerContextStruct >pure virtual - update(const TriggerContextStruct &ctx)=0gridfire::trigger::Trigger< TriggerContextStruct >pure virtual - why(const TriggerContextStruct &ctx) const =0gridfire::trigger::Trigger< TriggerContextStruct >pure virtual - ~Trigger()=defaultgridfire::trigger::Trigger< TriggerContextStruct >virtual + step(const TriggerContextStruct &ctx)=0gridfire::trigger::Trigger< TriggerContextStruct >pure virtual + update(const TriggerContextStruct &ctx)=0gridfire::trigger::Trigger< TriggerContextStruct >pure virtual + why(const TriggerContextStruct &ctx) const =0gridfire::trigger::Trigger< TriggerContextStruct >pure virtual + ~Trigger()=defaultgridfire::trigger::Trigger< TriggerContextStruct >virtual
      diff --git a/docs/html/classgridfire_1_1trigger_1_1_trigger.html b/docs/html/classgridfire_1_1trigger_1_1_trigger.html index 33221723..99c787fb 100644 --- a/docs/html/classgridfire_1_1trigger_1_1_trigger.html +++ b/docs/html/classgridfire_1_1trigger_1_1_trigger.html @@ -29,7 +29,7 @@ -
      GridFire 0.6.0 +
      GridFire v0.7.0-alpha
      General Purpose Nuclear Network
      @@ -135,6 +135,9 @@ Public Member Functions virtual void update (const TriggerContextStruct &ctx)=0  Update any internal state with the given context (e.g., counters, windows).
        +virtual void step (const TriggerContextStruct &ctx)=0 + similar to update but intended to be run on every step not just those where the trigger triggered
      +  virtual void reset ()=0  Reset internal state and diagnostics counters.
        @@ -237,7 +240,7 @@ template<typename TriggerContextStruct>
      Returns
      true if the condition is satisfied; false otherwise.
      -

      Implemented in gridfire::trigger::AndTrigger< TriggerContextStruct >, gridfire::trigger::EveryNthTrigger< TriggerContextStruct >, gridfire::trigger::NotTrigger< TriggerContextStruct >, gridfire::trigger::OrTrigger< TriggerContextStruct >, gridfire::trigger::solver::CVODE::OffDiagonalTrigger, gridfire::trigger::solver::CVODE::SimulationTimeTrigger, and gridfire::trigger::solver::CVODE::TimestepCollapseTrigger.

      +

      Implemented in gridfire::trigger::AndTrigger< TriggerContextStruct >, gridfire::trigger::EveryNthTrigger< TriggerContextStruct >, gridfire::trigger::NotTrigger< TriggerContextStruct >, gridfire::trigger::OrTrigger< TriggerContextStruct >, gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger, gridfire::trigger::solver::CVODE::OffDiagonalTrigger, gridfire::trigger::solver::CVODE::SimulationTimeTrigger, and gridfire::trigger::solver::CVODE::TimestepCollapseTrigger.

    @@ -268,7 +271,7 @@ template<typename TriggerContextStruct>

    Human-readable description of this trigger's logic.

    -

    Implemented in gridfire::trigger::AndTrigger< TriggerContextStruct >, gridfire::trigger::EveryNthTrigger< TriggerContextStruct >, gridfire::trigger::NotTrigger< TriggerContextStruct >, gridfire::trigger::OrTrigger< TriggerContextStruct >, gridfire::trigger::solver::CVODE::OffDiagonalTrigger, gridfire::trigger::solver::CVODE::SimulationTimeTrigger, and gridfire::trigger::solver::CVODE::TimestepCollapseTrigger.

    +

    Implemented in gridfire::trigger::AndTrigger< TriggerContextStruct >, gridfire::trigger::EveryNthTrigger< TriggerContextStruct >, gridfire::trigger::NotTrigger< TriggerContextStruct >, gridfire::trigger::OrTrigger< TriggerContextStruct >, gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger, gridfire::trigger::solver::CVODE::OffDiagonalTrigger, gridfire::trigger::solver::CVODE::SimulationTimeTrigger, and gridfire::trigger::solver::CVODE::TimestepCollapseTrigger.

    @@ -299,7 +302,7 @@ template<typename TriggerContextStruct>

    Short, stable name for this trigger (suitable for logs/UI).

    -

    Implemented in gridfire::trigger::AndTrigger< TriggerContextStruct >, gridfire::trigger::EveryNthTrigger< TriggerContextStruct >, gridfire::trigger::NotTrigger< TriggerContextStruct >, gridfire::trigger::OrTrigger< TriggerContextStruct >, gridfire::trigger::solver::CVODE::OffDiagonalTrigger, gridfire::trigger::solver::CVODE::SimulationTimeTrigger, and gridfire::trigger::solver::CVODE::TimestepCollapseTrigger.

    +

    Implemented in gridfire::trigger::AndTrigger< TriggerContextStruct >, gridfire::trigger::EveryNthTrigger< TriggerContextStruct >, gridfire::trigger::NotTrigger< TriggerContextStruct >, gridfire::trigger::OrTrigger< TriggerContextStruct >, gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger, gridfire::trigger::solver::CVODE::OffDiagonalTrigger, gridfire::trigger::solver::CVODE::SimulationTimeTrigger, and gridfire::trigger::solver::CVODE::TimestepCollapseTrigger.

    @@ -330,7 +333,7 @@ template<typename TriggerContextStruct>

    Total number of times this trigger evaluated to false since last reset.

    -

    Implemented in gridfire::trigger::AndTrigger< TriggerContextStruct >, gridfire::trigger::EveryNthTrigger< TriggerContextStruct >, gridfire::trigger::NotTrigger< TriggerContextStruct >, gridfire::trigger::OrTrigger< TriggerContextStruct >, gridfire::trigger::solver::CVODE::OffDiagonalTrigger, gridfire::trigger::solver::CVODE::SimulationTimeTrigger, and gridfire::trigger::solver::CVODE::TimestepCollapseTrigger.

    +

    Implemented in gridfire::trigger::AndTrigger< TriggerContextStruct >, gridfire::trigger::EveryNthTrigger< TriggerContextStruct >, gridfire::trigger::NotTrigger< TriggerContextStruct >, gridfire::trigger::OrTrigger< TriggerContextStruct >, gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger, gridfire::trigger::solver::CVODE::OffDiagonalTrigger, gridfire::trigger::solver::CVODE::SimulationTimeTrigger, and gridfire::trigger::solver::CVODE::TimestepCollapseTrigger.

    @@ -361,7 +364,7 @@ template<typename TriggerContextStruct>

    Total number of times this trigger evaluated to true since last reset.

    -

    Implemented in gridfire::trigger::AndTrigger< TriggerContextStruct >, gridfire::trigger::EveryNthTrigger< TriggerContextStruct >, gridfire::trigger::NotTrigger< TriggerContextStruct >, gridfire::trigger::OrTrigger< TriggerContextStruct >, gridfire::trigger::solver::CVODE::OffDiagonalTrigger, gridfire::trigger::solver::CVODE::SimulationTimeTrigger, and gridfire::trigger::solver::CVODE::TimestepCollapseTrigger.

    +

    Implemented in gridfire::trigger::AndTrigger< TriggerContextStruct >, gridfire::trigger::EveryNthTrigger< TriggerContextStruct >, gridfire::trigger::NotTrigger< TriggerContextStruct >, gridfire::trigger::OrTrigger< TriggerContextStruct >, gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger, gridfire::trigger::solver::CVODE::OffDiagonalTrigger, gridfire::trigger::solver::CVODE::SimulationTimeTrigger, and gridfire::trigger::solver::CVODE::TimestepCollapseTrigger.

    @@ -392,7 +395,44 @@ template<typename TriggerContextStruct>

    Reset internal state and diagnostics counters.

    -

    Implemented in gridfire::trigger::AndTrigger< TriggerContextStruct >, gridfire::trigger::EveryNthTrigger< TriggerContextStruct >, gridfire::trigger::NotTrigger< TriggerContextStruct >, gridfire::trigger::OrTrigger< TriggerContextStruct >, gridfire::trigger::solver::CVODE::OffDiagonalTrigger, gridfire::trigger::solver::CVODE::SimulationTimeTrigger, and gridfire::trigger::solver::CVODE::TimestepCollapseTrigger.

    +

    Implemented in gridfire::trigger::AndTrigger< TriggerContextStruct >, gridfire::trigger::EveryNthTrigger< TriggerContextStruct >, gridfire::trigger::NotTrigger< TriggerContextStruct >, gridfire::trigger::OrTrigger< TriggerContextStruct >, gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger, gridfire::trigger::solver::CVODE::OffDiagonalTrigger, gridfire::trigger::solver::CVODE::SimulationTimeTrigger, and gridfire::trigger::solver::CVODE::TimestepCollapseTrigger.

    + + + + +

    ◆ step()

    + +
    +
    +
    +template<typename TriggerContextStruct>
    + + + + + +
    + + + + + + + +
    virtual void gridfire::trigger::Trigger< TriggerContextStruct >::step (const TriggerContextStruct & ctx)
    +     		+pure virtual
    +
    + +

    similar to update but intended to be run on every step not just those where the trigger triggered

    +
    Parameters
    + + +
    ctxContext snapshot used to update state.
    +
    +
    + +

    Implemented in gridfire::trigger::AndTrigger< TriggerContextStruct >, gridfire::trigger::EveryNthTrigger< TriggerContextStruct >, gridfire::trigger::NotTrigger< TriggerContextStruct >, gridfire::trigger::OrTrigger< TriggerContextStruct >, gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger, gridfire::trigger::solver::CVODE::OffDiagonalTrigger, gridfire::trigger::solver::CVODE::SimulationTimeTrigger, and gridfire::trigger::solver::CVODE::TimestepCollapseTrigger.

    @@ -429,7 +469,7 @@ template<typename TriggerContextStruct> -

    Implemented in gridfire::trigger::AndTrigger< TriggerContextStruct >, gridfire::trigger::EveryNthTrigger< TriggerContextStruct >, gridfire::trigger::NotTrigger< TriggerContextStruct >, gridfire::trigger::OrTrigger< TriggerContextStruct >, gridfire::trigger::solver::CVODE::OffDiagonalTrigger, gridfire::trigger::solver::CVODE::SimulationTimeTrigger, and gridfire::trigger::solver::CVODE::TimestepCollapseTrigger.

    +

    Implemented in gridfire::trigger::AndTrigger< TriggerContextStruct >, gridfire::trigger::EveryNthTrigger< TriggerContextStruct >, gridfire::trigger::NotTrigger< TriggerContextStruct >, gridfire::trigger::OrTrigger< TriggerContextStruct >, gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger, gridfire::trigger::solver::CVODE::OffDiagonalTrigger, gridfire::trigger::solver::CVODE::SimulationTimeTrigger, and gridfire::trigger::solver::CVODE::TimestepCollapseTrigger.

    @@ -467,7 +507,7 @@ template<typename TriggerContextStruct>
    Returns
    A TriggerResult tree with a boolean value and per-cause details.
    -

    Implemented in gridfire::trigger::AndTrigger< TriggerContextStruct >, gridfire::trigger::EveryNthTrigger< TriggerContextStruct >, gridfire::trigger::NotTrigger< TriggerContextStruct >, gridfire::trigger::OrTrigger< TriggerContextStruct >, gridfire::trigger::solver::CVODE::OffDiagonalTrigger, gridfire::trigger::solver::CVODE::SimulationTimeTrigger, and gridfire::trigger::solver::CVODE::TimestepCollapseTrigger.

    +

    Implemented in gridfire::trigger::AndTrigger< TriggerContextStruct >, gridfire::trigger::EveryNthTrigger< TriggerContextStruct >, gridfire::trigger::NotTrigger< TriggerContextStruct >, gridfire::trigger::OrTrigger< TriggerContextStruct >, gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger, gridfire::trigger::solver::CVODE::OffDiagonalTrigger, gridfire::trigger::solver::CVODE::SimulationTimeTrigger, and gridfire::trigger::solver::CVODE::TimestepCollapseTrigger.

    diff --git a/docs/html/classgridfire_1_1trigger_1_1_trigger.js b/docs/html/classgridfire_1_1trigger_1_1_trigger.js index 27b6fb39..63888b9f 100644 --- a/docs/html/classgridfire_1_1trigger_1_1_trigger.js +++ b/docs/html/classgridfire_1_1trigger_1_1_trigger.js @@ -7,6 +7,7 @@ var classgridfire_1_1trigger_1_1_trigger = [ "numMisses", "classgridfire_1_1trigger_1_1_trigger.html#a81848e5af844795d879b6d885a2701d7", null ], [ "numTriggers", "classgridfire_1_1trigger_1_1_trigger.html#a4ea3abfb76a09c4f55ad05d73a2cf12d", null ], [ "reset", "classgridfire_1_1trigger_1_1_trigger.html#af652af761675736419b961b6946c728d", null ], + [ "step", "classgridfire_1_1trigger_1_1_trigger.html#a4b7ffa4d8d31e2118a8e86172be51041", null ], [ "update", "classgridfire_1_1trigger_1_1_trigger.html#a048899795704f68668960454d118a6fc", null ], [ "why", "classgridfire_1_1trigger_1_1_trigger.html#a9f020d828ca36a601b780566cc3377ea", null ] ]; \ No newline at end of file diff --git a/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger-members.html b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger-members.html new file mode 100644 index 00000000..4f1659ef --- /dev/null +++ b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger-members.html @@ -0,0 +1,140 @@ + + + + + + + +GridFire: Member List + + + + + + + + + + + + + + + + + +
    +
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    GridFire v0.7.0-alpha +
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    gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger Member List
    +
    +
    + +

    This is the complete list of members for gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger, including all inherited members.

    + + + + + + + + + + + + + + + + + + + + + + + + +
    abs_failure(const gridfire::solver::CVODESolverStrategy::TimestepContext &ctx) constgridfire::trigger::solver::CVODE::ConvergenceFailureTriggerprivate
    check(const gridfire::solver::CVODESolverStrategy::TimestepContext &ctx) const overridegridfire::trigger::solver::CVODE::ConvergenceFailureTriggervirtual
    ConvergenceFailureTrigger(size_t totalFailures, float relativeFailureRate, size_t windowSize)gridfire::trigger::solver::CVODE::ConvergenceFailureTriggerexplicit
    current_mean() constgridfire::trigger::solver::CVODE::ConvergenceFailureTriggerprivate
    describe() const overridegridfire::trigger::solver::CVODE::ConvergenceFailureTriggervirtual
    m_hitsgridfire::trigger::solver::CVODE::ConvergenceFailureTriggermutableprivate
    m_loggergridfire::trigger::solver::CVODE::ConvergenceFailureTriggerprivate
    m_missesgridfire::trigger::solver::CVODE::ConvergenceFailureTriggermutableprivate
    m_relativeFailureRategridfire::trigger::solver::CVODE::ConvergenceFailureTriggerprivate
    m_resetsgridfire::trigger::solver::CVODE::ConvergenceFailureTriggermutableprivate
    m_totalFailuresgridfire::trigger::solver::CVODE::ConvergenceFailureTriggerprivate
    m_updatesgridfire::trigger::solver::CVODE::ConvergenceFailureTriggermutableprivate
    m_windowgridfire::trigger::solver::CVODE::ConvergenceFailureTriggerprivate
    m_windowSizegridfire::trigger::solver::CVODE::ConvergenceFailureTriggerprivate
    name() const overridegridfire::trigger::solver::CVODE::ConvergenceFailureTriggervirtual
    numMisses() const overridegridfire::trigger::solver::CVODE::ConvergenceFailureTriggervirtual
    numTriggers() const overridegridfire::trigger::solver::CVODE::ConvergenceFailureTriggervirtual
    rel_failure(const gridfire::solver::CVODESolverStrategy::TimestepContext &ctx) constgridfire::trigger::solver::CVODE::ConvergenceFailureTriggerprivate
    reset() overridegridfire::trigger::solver::CVODE::ConvergenceFailureTriggervirtual
    step(const gridfire::solver::CVODESolverStrategy::TimestepContext &ctx) overridegridfire::trigger::solver::CVODE::ConvergenceFailureTriggervirtual
    update(const gridfire::solver::CVODESolverStrategy::TimestepContext &ctx) overridegridfire::trigger::solver::CVODE::ConvergenceFailureTriggervirtual
    why(const gridfire::solver::CVODESolverStrategy::TimestepContext &ctx) const overridegridfire::trigger::solver::CVODE::ConvergenceFailureTriggervirtual
    ~Trigger()=defaultgridfire::trigger::Trigger< gridfire::solver::CVODESolverStrategy::TimestepContext >virtual
    +
    + + + + diff --git a/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.html b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.html new file mode 100644 index 00000000..039291c1 --- /dev/null +++ b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.html @@ -0,0 +1,800 @@ + + + + + + + +GridFire: gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger Class Reference + + + + + + + + + + + + + + + + + +
    +
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    +Public Member Functions | +Private Attributes | +List of all members
    +
    gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger Class Referencefinal
    +
    +
    + +

    #include <engine_partitioning_trigger.h>

    +
    +Inheritance diagram for gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger:
    +
    +
    + + +gridfire::trigger::Trigger< gridfire::solver::CVODESolverStrategy::TimestepContext > + +
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +

    +Public Member Functions

     ConvergenceFailureTrigger (size_t totalFailures, float relativeFailureRate, size_t windowSize)
     
    bool check (const gridfire::solver::CVODESolverStrategy::TimestepContext &ctx) const override
     Evaluate the trigger condition against the provided context.
     
    void update (const gridfire::solver::CVODESolverStrategy::TimestepContext &ctx) override
     Update any internal state with the given context (e.g., counters, windows).
     
    void step (const gridfire::solver::CVODESolverStrategy::TimestepContext &ctx) override
     similar to update but intended to be run on every step not just those where the trigger triggered
     
    void reset () override
     Reset internal state and diagnostics counters.
     
    std::string name () const override
     Short, stable name for this trigger (suitable for logs/UI).
     
    std::string describe () const override
     Human-readable description of this trigger's logic.
     
    TriggerResult why (const gridfire::solver::CVODESolverStrategy::TimestepContext &ctx) const override
     Explain why the last evaluation would be true/false in a structured way.
     
    size_t numTriggers () const override
     Total number of times this trigger evaluated to true since last reset.
     
    size_t numMisses () const override
     Total number of times this trigger evaluated to false since last reset.
     
    - Public Member Functions inherited from gridfire::trigger::Trigger< gridfire::solver::CVODESolverStrategy::TimestepContext >
    virtual ~Trigger ()=default
     Virtual destructor for polymorphic use.
     
    + + + + +

    +Private Attributes

    quill::Logger * m_logger = fourdst::logging::LogManager::getInstance().getLogger("log")
     Logger used for trace/error diagnostics.
     
    + + + + + + + + + + + + + + + + + + + + + + + +

    Diagnostics counters

    size_t m_hits = 0
     
    size_t m_misses = 0
     
    size_t m_updates = 0
     
    size_t m_resets = 0
     
    size_t m_totalFailures
     
    float m_relativeFailureRate
     
    size_t m_windowSize
     
    std::deque< size_t > m_window
     
    float current_mean () const
     
    bool abs_failure (const gridfire::solver::CVODESolverStrategy::TimestepContext &ctx) const
     
    bool rel_failure (const gridfire::solver::CVODESolverStrategy::TimestepContext &ctx) const
     
    +

    Constructor & Destructor Documentation

    + +

    ◆ ConvergenceFailureTrigger()

    + +
    +
    + + + + + +
    + + + + + + + + + + + + + + + + +
    gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::ConvergenceFailureTrigger (size_t totalFailures,
    float relativeFailureRate,
    size_t windowSize )
    +     		+explicit
    +
    + +
    +
    +

    Member Function Documentation

    + +

    ◆ abs_failure()

    + +
    +
    + + + + + +
    + + + + + + + +
    bool gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::abs_failure (const gridfire::solver::CVODESolverStrategy::TimestepContext & ctx) const
    +     		+private
    +
    + +
    +
    + +

    ◆ check()

    + +
    +
    + + + + + +
    + + + + + + + +
    bool gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::check (const gridfire::solver::CVODESolverStrategy::TimestepContext & ctx) const
    +     		+overridevirtual
    +
    + +

    Evaluate the trigger condition against the provided context.

    +
    Parameters
    + + +
    ctxContext snapshot (immutable view) used to evaluate the condition.
    +
    +
    +
    Returns
    true if the condition is satisfied; false otherwise.
    + +

    Implements gridfire::trigger::Trigger< gridfire::solver::CVODESolverStrategy::TimestepContext >.

    + +
    +
    + +

    ◆ current_mean()

    + +
    +
    + + + + + +
    + + + + + + + +
    float gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::current_mean () const
    +     		+private
    +
    + +
    +
    + +

    ◆ describe()

    + +
    +
    + + + + + +
    + + + + + + + +
    std::string gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::describe () const
    +     		+nodiscardoverridevirtual
    +
    + +

    Human-readable description of this trigger's logic.

    + +

    Implements gridfire::trigger::Trigger< gridfire::solver::CVODESolverStrategy::TimestepContext >.

    + +
    +
    + +

    ◆ name()

    + +
    +
    + + + + + +
    + + + + + + + +
    std::string gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::name () const
    +     		+nodiscardoverridevirtual
    +
    + +

    Short, stable name for this trigger (suitable for logs/UI).

    + +

    Implements gridfire::trigger::Trigger< gridfire::solver::CVODESolverStrategy::TimestepContext >.

    + +
    +
    + +

    ◆ numMisses()

    + +
    +
    + + + + + +
    + + + + + + + +
    size_t gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::numMisses () const
    +     		+nodiscardoverridevirtual
    +
    + +

    Total number of times this trigger evaluated to false since last reset.

    + +

    Implements gridfire::trigger::Trigger< gridfire::solver::CVODESolverStrategy::TimestepContext >.

    + +
    +
    + +

    ◆ numTriggers()

    + +
    +
    + + + + + +
    + + + + + + + +
    size_t gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::numTriggers () const
    +     		+nodiscardoverridevirtual
    +
    + +

    Total number of times this trigger evaluated to true since last reset.

    + +

    Implements gridfire::trigger::Trigger< gridfire::solver::CVODESolverStrategy::TimestepContext >.

    + +
    +
    + +

    ◆ rel_failure()

    + +
    +
    + + + + + +
    + + + + + + + +
    bool gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::rel_failure (const gridfire::solver::CVODESolverStrategy::TimestepContext & ctx) const
    +     		+private
    +
    + +
    +
    + +

    ◆ reset()

    + +
    +
    + + + + + +
    + + + + + + + +
    void gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::reset ()
    +     		+overridevirtual
    +
    + +

    Reset internal state and diagnostics counters.

    + +

    Implements gridfire::trigger::Trigger< gridfire::solver::CVODESolverStrategy::TimestepContext >.

    + +
    +
    + +

    ◆ step()

    + +
    +
    + + + + + +
    + + + + + + + +
    void gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::step (const gridfire::solver::CVODESolverStrategy::TimestepContext & ctx)
    +     		+overridevirtual
    +
    + +

    similar to update but intended to be run on every step not just those where the trigger triggered

    +
    Parameters
    + + +
    ctxContext snapshot used to update state.
    +
    +
    + +

    Implements gridfire::trigger::Trigger< gridfire::solver::CVODESolverStrategy::TimestepContext >.

    + +
    +
    + +

    ◆ update()

    + +
    +
    + + + + + +
    + + + + + + + +
    void gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::update (const gridfire::solver::CVODESolverStrategy::TimestepContext & ctx)
    +     		+overridevirtual
    +
    + +

    Update any internal state with the given context (e.g., counters, windows).

    +
    Parameters
    + + +
    ctxContext snapshot used to update state.
    +
    +
    + +

    Implements gridfire::trigger::Trigger< gridfire::solver::CVODESolverStrategy::TimestepContext >.

    + +
    +
    + +

    ◆ why()

    + +
    +
    + + + + + +
    + + + + + + + +
    TriggerResult gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::why (const gridfire::solver::CVODESolverStrategy::TimestepContext & ctx) const
    +     		+nodiscardoverridevirtual
    +
    + +

    Explain why the last evaluation would be true/false in a structured way.

    +
    Parameters
    + + +
    ctxContext snapshot for the explanation.
    +
    +
    +
    Returns
    A TriggerResult tree with a boolean value and per-cause details.
    + +

    Implements gridfire::trigger::Trigger< gridfire::solver::CVODESolverStrategy::TimestepContext >.

    + +
    +
    +

    Member Data Documentation

    + +

    ◆ m_hits

    + +
    +
    + + + + + +
    + + + + +
    size_t gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::m_hits = 0
    +     		+mutableprivate
    +
    + +
    +
    + +

    ◆ m_logger

    + +
    +
    + + + + + +
    + + + + +
    quill::Logger* gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::m_logger = fourdst::logging::LogManager::getInstance().getLogger("log")
    +     		+private
    +
    + +

    Logger used for trace/error diagnostics.

    + +
    +
    + +

    ◆ m_misses

    + +
    +
    + + + + + +
    + + + + +
    size_t gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::m_misses = 0
    +     		+mutableprivate
    +
    + +
    +
    + +

    ◆ m_relativeFailureRate

    + +
    +
    + + + + + +
    + + + + +
    float gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::m_relativeFailureRate
    +     		+private
    +
    + +
    +
    + +

    ◆ m_resets

    + +
    +
    + + + + + +
    + + + + +
    size_t gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::m_resets = 0
    +     		+mutableprivate
    +
    + +
    +
    + +

    ◆ m_totalFailures

    + +
    +
    + + + + + +
    + + + + +
    size_t gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::m_totalFailures
    +     		+private
    +
    + +
    +
    + +

    ◆ m_updates

    + +
    +
    + + + + + +
    + + + + +
    size_t gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::m_updates = 0
    +     		+mutableprivate
    +
    + +
    +
    + +

    ◆ m_window

    + +
    +
    + + + + + +
    + + + + +
    std::deque<size_t> gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::m_window
    +     		+private
    +
    + +
    +
    + +

    ◆ m_windowSize

    + +
    +
    + + + + + +
    + + + + +
    size_t gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::m_windowSize
    +     		+private
    +
    + +
    +
    +
    The documentation for this class was generated from the following files: +
    +
    + + + + diff --git a/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.js b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.js new file mode 100644 index 00000000..e747c203 --- /dev/null +++ b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.js @@ -0,0 +1,25 @@ +var classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger = +[ + [ "ConvergenceFailureTrigger", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.html#a63010d8ba73689dda0c2228a1462aae2", null ], + [ "abs_failure", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.html#a5ae9ce66d4bbafd83145f8545a32d33a", null ], + [ "check", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.html#ae8765656a45319335c2bb90c3fb3d308", null ], + [ "current_mean", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.html#a3d8d9eafff17ea6a283afbc7e8b450bb", null ], + [ "describe", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.html#aa2bb19e4a1e24f6fd7f86d0c80ebbec3", null ], + [ "name", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.html#a92a57cea3b58bd7948c3c3fb4f75619b", null ], + [ "numMisses", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.html#aa26bf911c73b7f2ec343d473caf13718", null ], + [ "numTriggers", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.html#aa7cc311316539b2d348422ba907dc64e", null ], + [ "rel_failure", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.html#a4180dc6761c073acd82583a834ca09fd", null ], + [ "reset", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.html#a0bcab0247b3db618b76bd6769cf9a2ea", null ], + [ "step", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.html#aaef2090ed67a7c27967821f75a61e524", null ], + [ "update", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.html#ae47bbdf6edae798f30866c1ac4104cc1", null ], + [ "why", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.html#aedd397b71cd5b1ad26a0b21a34cf5631", null ], + [ "m_hits", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.html#afd5c9867790fc5ef453bc6a5e5494766", null ], + [ "m_logger", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.html#abb65f2fb74ea74a7f078b4e14f8bc949", null ], + [ "m_misses", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.html#a1b28f79b7d5d4b6a947bdf75c049739f", null ], + [ "m_relativeFailureRate", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.html#a19795b0ebf01df3e70fe858cfb527d08", null ], + [ "m_resets", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.html#a270dae9d1f4e3ee410389e113d7f0857", null ], + [ "m_totalFailures", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.html#a9e116ac645ba31906dae26234c47c3f4", null ], + [ "m_updates", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.html#acf63dd6e786231ac6c16e590d01bc6eb", null ], + [ "m_window", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.html#a8df9f55e0af1a16ee56678a109f08920", null ], + [ "m_windowSize", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.html#abf4814a4423cfbe816b07d5eea4efea4", null ] +]; \ No newline at end of file diff --git a/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.png b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.png new file mode 100644 index 00000000..471d1f89 Binary files /dev/null and b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.png differ diff --git a/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger-members.html b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger-members.html index 5734d667..db1e9d10 100644 --- a/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger-members.html +++ b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -118,9 +118,10 @@ $(function(){initNavTree('classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_o numTriggers() const overridegridfire::trigger::solver::CVODE::OffDiagonalTriggervirtual OffDiagonalTrigger(double threshold)gridfire::trigger::solver::CVODE::OffDiagonalTriggerexplicit reset() overridegridfire::trigger::solver::CVODE::OffDiagonalTriggervirtual - update(const gridfire::solver::CVODESolverStrategy::TimestepContext &ctx) overridegridfire::trigger::solver::CVODE::OffDiagonalTriggervirtual - why(const gridfire::solver::CVODESolverStrategy::TimestepContext &ctx) const overridegridfire::trigger::solver::CVODE::OffDiagonalTriggervirtual - ~Trigger()=defaultgridfire::trigger::Trigger< gridfire::solver::CVODESolverStrategy::TimestepContext >virtual + step(const gridfire::solver::CVODESolverStrategy::TimestepContext &ctx) overridegridfire::trigger::solver::CVODE::OffDiagonalTriggervirtual + update(const gridfire::solver::CVODESolverStrategy::TimestepContext &ctx) overridegridfire::trigger::solver::CVODE::OffDiagonalTriggervirtual + why(const gridfire::solver::CVODESolverStrategy::TimestepContext &ctx) const overridegridfire::trigger::solver::CVODE::OffDiagonalTriggervirtual + ~Trigger()=defaultgridfire::trigger::Trigger< gridfire::solver::CVODESolverStrategy::TimestepContext >virtual
    diff --git a/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html index c170caef..6da0c005 100644 --- a/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html +++ b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -132,6 +132,9 @@ Public Member Functions void update (const gridfire::solver::CVODESolverStrategy::TimestepContext &ctx) override  Record an update; does not mutate any Jacobian-related state.
      +void step (const gridfire::solver::CVODESolverStrategy::TimestepContext &ctx) override + similar to update but intended to be run on every step not just those where the trigger triggered
    +  void reset () override  Reset counters to zero.
      @@ -409,6 +412,41 @@ Private Attributes

    Implements gridfire::trigger::Trigger< gridfire::solver::CVODESolverStrategy::TimestepContext >.

    +
    + + +

    ◆ step()

    + +
    +
    + + + + + +
    + + + + + + + +
    void gridfire::trigger::solver::CVODE::OffDiagonalTrigger::step (const gridfire::solver::CVODESolverStrategy::TimestepContext & ctx)
    +     		+overridevirtual
    +
    + +

    similar to update but intended to be run on every step not just those where the trigger triggered

    +
    Parameters
    + + +
    ctxContext snapshot used to update state.
    +
    +
    + +

    Implements gridfire::trigger::Trigger< gridfire::solver::CVODESolverStrategy::TimestepContext >.

    +
    diff --git a/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.js b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.js index 07d188d3..f6a08f10 100644 --- a/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.js +++ b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.js @@ -7,6 +7,7 @@ var classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger = [ "numMisses", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a0e1ad148f9f3232992a4b16e440c249a", null ], [ "numTriggers", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a32980aaf6d9c7632c024b4b74b1d9e70", null ], [ "reset", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a9b782cbf033ed2023da6b2d55dcefc4e", null ], + [ "step", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a8b882c6ba6e267d7051031140bbb7ad6", null ], [ "update", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a179cb09a91d5c638d7a347137b208767", null ], [ "why", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a3af973e466ba62ebf1e41c608355e327", null ], [ "m_hits", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a0d3b7c1d1057f442417c2f8c2a7177c5", null ], diff --git a/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger-members.html b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger-members.html index 0e771037..c172645c 100644 --- a/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger-members.html +++ b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -120,9 +120,10 @@ $(function(){initNavTree('classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_s numTriggers() const overridegridfire::trigger::solver::CVODE::SimulationTimeTriggervirtual reset() overridegridfire::trigger::solver::CVODE::SimulationTimeTriggervirtual SimulationTimeTrigger(double interval)gridfire::trigger::solver::CVODE::SimulationTimeTriggerexplicit - update(const gridfire::solver::CVODESolverStrategy::TimestepContext &ctx) overridegridfire::trigger::solver::CVODE::SimulationTimeTriggervirtual - why(const gridfire::solver::CVODESolverStrategy::TimestepContext &ctx) const overridegridfire::trigger::solver::CVODE::SimulationTimeTriggervirtual - ~Trigger()=defaultgridfire::trigger::Trigger< gridfire::solver::CVODESolverStrategy::TimestepContext >virtual + step(const gridfire::solver::CVODESolverStrategy::TimestepContext &ctx) overridegridfire::trigger::solver::CVODE::SimulationTimeTriggervirtual + update(const gridfire::solver::CVODESolverStrategy::TimestepContext &ctx) overridegridfire::trigger::solver::CVODE::SimulationTimeTriggervirtual + why(const gridfire::solver::CVODESolverStrategy::TimestepContext &ctx) const overridegridfire::trigger::solver::CVODE::SimulationTimeTriggervirtual + ~Trigger()=defaultgridfire::trigger::Trigger< gridfire::solver::CVODESolverStrategy::TimestepContext >virtual
    diff --git a/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html index 910b9ad7..1f9b8932 100644 --- a/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html +++ b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -132,6 +132,9 @@ Public Member Functions void update (const gridfire::solver::CVODESolverStrategy::TimestepContext &ctx) override  Update internal state; if check(ctx) is true, advance last_trigger_time.
      +void step (const gridfire::solver::CVODESolverStrategy::TimestepContext &ctx) override + similar to update but intended to be run on every step not just those where the trigger triggered
    +  void reset () override  Reset counters and last trigger bookkeeping (time and delta) to zero.
      @@ -413,6 +416,41 @@ Private Attributes

    Implements gridfire::trigger::Trigger< gridfire::solver::CVODESolverStrategy::TimestepContext >.

    +
    + + +

    ◆ step()

    + +
    +
    + + + + + +
    + + + + + + + +
    void gridfire::trigger::solver::CVODE::SimulationTimeTrigger::step (const gridfire::solver::CVODESolverStrategy::TimestepContext & ctx)
    +     		+overridevirtual
    +
    + +

    similar to update but intended to be run on every step not just those where the trigger triggered

    +
    Parameters
    + + +
    ctxContext snapshot used to update state.
    +
    +
    + +

    Implements gridfire::trigger::Trigger< gridfire::solver::CVODESolverStrategy::TimestepContext >.

    +
    diff --git a/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.js b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.js index 2e6bcfef..4c0b6ad3 100644 --- a/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.js +++ b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.js @@ -7,6 +7,7 @@ var classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger [ "numMisses", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a273eb8a3e80d1235d2b3f252e55c5b50", null ], [ "numTriggers", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a34d285584ea96f71b99eefad8c738296", null ], [ "reset", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#af4034fa431e6c88fd05c50cce31b2fa0", null ], + [ "step", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#aafc7f40bde2c78f4d100b6f9da771831", null ], [ "update", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a468bf58f66417493501c59d7a8aabc98", null ], [ "why", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a9dfab0b765d3a4c362cecd860d59f58a", null ], [ "m_hits", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a2b1b4a9ef137e76d39e7a7dcb6cf725d", null ], diff --git a/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger-members.html b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger-members.html index c489608b..9e35b12a 100644 --- a/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger-members.html +++ b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -120,11 +120,12 @@ $(function(){initNavTree('classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_t numMisses() const overridegridfire::trigger::solver::CVODE::TimestepCollapseTriggervirtual numTriggers() const overridegridfire::trigger::solver::CVODE::TimestepCollapseTriggervirtual reset() overridegridfire::trigger::solver::CVODE::TimestepCollapseTriggervirtual - TimestepCollapseTrigger(double threshold, bool relative)gridfire::trigger::solver::CVODE::TimestepCollapseTriggerexplicit - TimestepCollapseTrigger(double threshold, bool relative, size_t windowSize)gridfire::trigger::solver::CVODE::TimestepCollapseTriggerexplicit - update(const gridfire::solver::CVODESolverStrategy::TimestepContext &ctx) overridegridfire::trigger::solver::CVODE::TimestepCollapseTriggervirtual - why(const gridfire::solver::CVODESolverStrategy::TimestepContext &ctx) const overridegridfire::trigger::solver::CVODE::TimestepCollapseTriggervirtual - ~Trigger()=defaultgridfire::trigger::Trigger< gridfire::solver::CVODESolverStrategy::TimestepContext >virtual + step(const gridfire::solver::CVODESolverStrategy::TimestepContext &ctx) overridegridfire::trigger::solver::CVODE::TimestepCollapseTriggervirtual + TimestepCollapseTrigger(double threshold, bool relative)gridfire::trigger::solver::CVODE::TimestepCollapseTriggerexplicit + TimestepCollapseTrigger(double threshold, bool relative, size_t windowSize)gridfire::trigger::solver::CVODE::TimestepCollapseTriggerexplicit + update(const gridfire::solver::CVODESolverStrategy::TimestepContext &ctx) overridegridfire::trigger::solver::CVODE::TimestepCollapseTriggervirtual + why(const gridfire::solver::CVODESolverStrategy::TimestepContext &ctx) const overridegridfire::trigger::solver::CVODE::TimestepCollapseTriggervirtual + ~Trigger()=defaultgridfire::trigger::Trigger< gridfire::solver::CVODESolverStrategy::TimestepContext >virtual
    diff --git a/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html index 6fe23afe..4dd7f611 100644 --- a/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html +++ b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -135,6 +135,9 @@ Public Member Functions void update (const gridfire::solver::CVODESolverStrategy::TimestepContext &ctx) override  Update sliding window with the most recent dt and increment update counter.
      +void step (const gridfire::solver::CVODESolverStrategy::TimestepContext &ctx) override + similar to update but intended to be run on every step not just those where the trigger triggered
    +  void reset () override  Reset counters and clear the dt window.
      @@ -487,6 +490,41 @@ Private Attributes

    Implements gridfire::trigger::Trigger< gridfire::solver::CVODESolverStrategy::TimestepContext >.

    +
    + + +

    ◆ step()

    + +
    +
    + + + + + +
    + + + + + + + +
    void gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::step (const gridfire::solver::CVODESolverStrategy::TimestepContext & ctx)
    +     		+overridevirtual
    +
    + +

    similar to update but intended to be run on every step not just those where the trigger triggered

    +
    Parameters
    + + +
    ctxContext snapshot used to update state.
    +
    +
    + +

    Implements gridfire::trigger::Trigger< gridfire::solver::CVODESolverStrategy::TimestepContext >.

    +
    diff --git a/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.js b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.js index 51386877..076eb356 100644 --- a/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.js +++ b/docs/html/classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.js @@ -8,6 +8,7 @@ var classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigg [ "numMisses", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a94bb1de08a5ff55e1874f595f8c8965c", null ], [ "numTriggers", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ad2a7c2567b100f97a024f65818ecefed", null ], [ "reset", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a0fe6af73b11b820561bd4e5552890d4e", null ], + [ "step", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a9723e389aeba05fdb3d4fd1dcc1ba07d", null ], [ "update", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#af6bff6a484e8729445c26620b489665d", null ], [ "why", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a22d8bc7aacbc388108225c26158e918c", null ], [ "m_hits", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#aff23db33140aa6a5a2ad36eda77b833d", null ], diff --git a/docs/html/classgridfire_1_1utils_1_1_column-members.html b/docs/html/classgridfire_1_1utils_1_1_column-members.html index a64b0dc3..b661fd0d 100644 --- a/docs/html/classgridfire_1_1utils_1_1_column-members.html +++ b/docs/html/classgridfire_1_1utils_1_1_column-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/classgridfire_1_1utils_1_1_column.html b/docs/html/classgridfire_1_1utils_1_1_column.html index 83b1c4cb..e74928c1 100644 --- a/docs/html/classgridfire_1_1utils_1_1_column.html +++ b/docs/html/classgridfire_1_1utils_1_1_column.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/classgridfire_1_1utils_1_1_column_base-members.html b/docs/html/classgridfire_1_1utils_1_1_column_base-members.html index ed50ceb0..d3a74839 100644 --- a/docs/html/classgridfire_1_1utils_1_1_column_base-members.html +++ b/docs/html/classgridfire_1_1utils_1_1_column_base-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/classgridfire_1_1utils_1_1_column_base.html b/docs/html/classgridfire_1_1utils_1_1_column_base.html index bd58b49d..7e8b431d 100644 --- a/docs/html/classgridfire_1_1utils_1_1_column_base.html +++ b/docs/html/classgridfire_1_1utils_1_1_column_base.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/concept_0d012022023301355052304263320136165002200160012126_1_1_is_dynamic_engine.html b/docs/html/concept_0d012022023301355052304263320136165002200160012126_1_1_is_dynamic_engine.html index da277047..588e8e56 100644 --- a/docs/html/concept_0d012022023301355052304263320136165002200160012126_1_1_is_dynamic_engine.html +++ b/docs/html/concept_0d012022023301355052304263320136165002200160012126_1_1_is_dynamic_engine.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -105,7 +105,7 @@ $(function(){initNavTree('concept_0d01202202330135505230426332013616500220016001

    Concept definition

    template<typename T>
    concept @012022023301355052304263320136165002200160012126::IsDynamicEngine = std::is_base_of_v<gridfire::DynamicEngine, T>
    - +
    diff --git a/docs/html/conceptgridfire_1_1_engine_type.html b/docs/html/conceptgridfire_1_1_engine_type.html index 55ac12d9..29c1940e 100644 --- a/docs/html/conceptgridfire_1_1_engine_type.html +++ b/docs/html/conceptgridfire_1_1_engine_type.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/conceptgridfire_1_1_is_arithmetic_or_a_d.html b/docs/html/conceptgridfire_1_1_is_arithmetic_or_a_d.html index 8c6826e7..d49766b6 100644 --- a/docs/html/conceptgridfire_1_1_is_arithmetic_or_a_d.html +++ b/docs/html/conceptgridfire_1_1_is_arithmetic_or_a_d.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/concepts.html b/docs/html/concepts.html index feb52c5b..47b7cea9 100644 --- a/docs/html/concepts.html +++ b/docs/html/concepts.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/construction_8cpp.html b/docs/html/construction_8cpp.html index 61a56575..c980cb40 100644 --- a/docs/html/construction_8cpp.html +++ b/docs/html/construction_8cpp.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -113,6 +113,7 @@ $(function(){initNavTree('construction_8cpp.html',''); initResizable(true); }); #include <ranges>
    #include <stdexcept>
    #include <memory>
    +#include <cmath>
    #include "gridfire/reaction/reaction.h"
    #include "gridfire/reaction/reaclib.h"
    #include "fourdst/composition/composition.h"
    @@ -135,8 +136,8 @@ Namespaces - - + +

    Functions

    ReactionSet gridfire::build_nuclear_network (const Composition &composition, const rates::weak::WeakRateInterpolator &weak_interpolator, BuildDepthType maxLayers, bool reverse_reaclib)
     
    ReactionSet gridfire::build_nuclear_network (const Composition &composition, const rates::weak::WeakRateInterpolator &weakInterpolator, BuildDepthType maxLayers, NetworkConstructionFlags ReactionTypes)
     
    diff --git a/docs/html/construction_8cpp.js b/docs/html/construction_8cpp.js index 51520520..01ceecc2 100644 --- a/docs/html/construction_8cpp.js +++ b/docs/html/construction_8cpp.js @@ -2,5 +2,5 @@ var construction_8cpp = [ [ "gridfire::ReactionSet", "classgridfire_1_1_reaction_set.html", "classgridfire_1_1_reaction_set" ], [ "gridfire::Reaction", "classgridfire_1_1_reaction.html", "classgridfire_1_1_reaction" ], - [ "gridfire::build_nuclear_network", "namespacegridfire.html#a58a036e8883e75a8abd3e18798563f71", null ] + [ "gridfire::build_nuclear_network", "namespacegridfire.html#ad0e3ec7cfe044c50929f378289f5fab9", null ] ]; \ No newline at end of file diff --git a/docs/html/construction_8h.html b/docs/html/construction_8h.html index 3aecabd2..8ecb3c00 100644 --- a/docs/html/construction_8h.html +++ b/docs/html/construction_8h.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -101,6 +101,7 @@ $(function(){initNavTree('construction_8h.html',''); initResizable(true); });
    Namespaces | +Enumerations | Functions
    construction.h File Reference
    @@ -116,11 +117,41 @@ Namespaces namespace  gridfire   + + + +

    +Enumerations

    enum class  gridfire::NetworkConstructionFlags : uint32_t {
    +  gridfire::NONE = 0 +, gridfire::STRONG = 1 << 0 +, gridfire::BETA_MINUS = 1 << 1 +, gridfire::BETA_PLUS = 1 << 2 +,
    +  gridfire::ELECTRON_CAPTURE = 1 << 3 +, gridfire::POSITRON_CAPTURE = 1 << 4 +, gridfire::REACLIB_WEAK = 1 << 5 +, gridfire::WRL_WEAK = BETA_MINUS | BETA_PLUS | ELECTRON_CAPTURE | POSITRON_CAPTURE +,
    +  gridfire::REACLIB = STRONG | REACLIB_WEAK +, gridfire::DEFAULT = REACLIB +, gridfire::ALL = STRONG | WRL_WEAK +
    + }
     
    - - - + + + + + + + + + + + + +

    Functions

    reaction::ReactionSet gridfire::build_reaclib_nuclear_network (const fourdst::composition::Composition &composition, const rates::weak::WeakRateInterpolator &weakInterpolator, BuildDepthType maxLayers=NetworkBuildDepth::Full, bool reverse=false)
     Builds a nuclear reaction network from the Reaclib library based on an initial composition.
     
    constexpr auto gridfire::to_underlying (NetworkConstructionFlags f) noexcept
     
    NetworkConstructionFlags gridfire::operator| (const NetworkConstructionFlags lhs, const NetworkConstructionFlags rhs)
     
    NetworkConstructionFlags gridfire::operator& (const NetworkConstructionFlags lhs, const NetworkConstructionFlags rhs)
     
    bool gridfire::has_flag (const NetworkConstructionFlags flags, const NetworkConstructionFlags flag_to_check)
     
    std::string gridfire::NetworkConstructionFlagsToString (NetworkConstructionFlags flags)
     
    reaction::ReactionSet gridfire::build_nuclear_network (const fourdst::composition::Composition &composition, const rates::weak::WeakRateInterpolator &weakInterpolator, BuildDepthType maxLayers=NetworkBuildDepth::Full, NetworkConstructionFlags ReactionTypes=NetworkConstructionFlags::DEFAULT)
     Builds a nuclear reaction network from the Reaclib library based on an initial composition.
     
    diff --git a/docs/html/construction_8h.js b/docs/html/construction_8h.js index 4fec1e51..0159a460 100644 --- a/docs/html/construction_8h.js +++ b/docs/html/construction_8h.js @@ -1,4 +1,22 @@ var construction_8h = [ - [ "gridfire::build_reaclib_nuclear_network", "namespacegridfire.html#a384323338f13166d87c7ac047434bd38", null ] + [ "gridfire::NetworkConstructionFlags", "namespacegridfire.html#ad7f0577c2f88caaf0cec6cf80c04892b", [ + [ "gridfire::NetworkConstructionFlags::NONE", "namespacegridfire.html#ad7f0577c2f88caaf0cec6cf80c04892bab50339a10e1de285ac99d4c3990b8693", null ], + [ "gridfire::NetworkConstructionFlags::STRONG", "namespacegridfire.html#ad7f0577c2f88caaf0cec6cf80c04892ba3dfb3ae3cdaa322f0388f1a531c39520", null ], + [ "gridfire::NetworkConstructionFlags::BETA_MINUS", "namespacegridfire.html#ad7f0577c2f88caaf0cec6cf80c04892ba079cbe546b094a3228f3d2308de42371", null ], + [ "gridfire::NetworkConstructionFlags::BETA_PLUS", "namespacegridfire.html#ad7f0577c2f88caaf0cec6cf80c04892baec3e428817690ce788dd410655d44ac7", null ], + [ "gridfire::NetworkConstructionFlags::ELECTRON_CAPTURE", "namespacegridfire.html#ad7f0577c2f88caaf0cec6cf80c04892ba26b6967eb578cb1b08373b342bf72ef7", null ], + [ "gridfire::NetworkConstructionFlags::POSITRON_CAPTURE", "namespacegridfire.html#ad7f0577c2f88caaf0cec6cf80c04892bae0be5539e1cf1c424806baa62540aa9d", null ], + [ "gridfire::NetworkConstructionFlags::REACLIB_WEAK", "namespacegridfire.html#ad7f0577c2f88caaf0cec6cf80c04892bab736eb13fff62c962f63232ec57f2692", null ], + [ "gridfire::NetworkConstructionFlags::WRL_WEAK", "namespacegridfire.html#ad7f0577c2f88caaf0cec6cf80c04892bafc9a7c10ff86192133ca7a280783bfe4", null ], + [ "gridfire::NetworkConstructionFlags::REACLIB", "namespacegridfire.html#ad7f0577c2f88caaf0cec6cf80c04892baf9885ed04411bef7b70f78b643c6a220", null ], + [ "gridfire::NetworkConstructionFlags::DEFAULT", "namespacegridfire.html#ad7f0577c2f88caaf0cec6cf80c04892ba5b39c8b553c821e7cddc6da64b5bd2ee", null ], + [ "gridfire::NetworkConstructionFlags::ALL", "namespacegridfire.html#ad7f0577c2f88caaf0cec6cf80c04892ba5fb1f955b45e38e31789286a1790398d", null ] + ] ], + [ "gridfire::build_nuclear_network", "namespacegridfire.html#a0bc156f634a447f88a19de3be961c00b", null ], + [ "gridfire::has_flag", "namespacegridfire.html#a5ad8e76156fd708fe6f3bb0f2ad8650b", null ], + [ "gridfire::NetworkConstructionFlagsToString", "namespacegridfire.html#a7c96c92c72485f364466c6b979959ef7", null ], + [ "gridfire::operator&", "namespacegridfire.html#a6de955e2cf2f0e0241bceabdee69f3f6", null ], + [ "gridfire::operator|", "namespacegridfire.html#a1504ccf93263bae031d95d4d3880999e", null ], + [ "gridfire::to_underlying", "namespacegridfire.html#a0c42ac7834a0ecb0e36c1e673a403349", null ] ]; \ No newline at end of file diff --git a/docs/html/deprecated.html b/docs/html/deprecated.html new file mode 100644 index 00000000..18ef9ee9 --- /dev/null +++ b/docs/html/deprecated.html @@ -0,0 +1,119 @@ + + + + + + + +GridFire: Deprecated List + + + + + + + + + + + + + + + + + +
    +
    + + + + + + +
    +
    GridFire v0.7.0-alpha +
    +
    General Purpose Nuclear Network
    +
    +
    + + + + + + + + +
    +
    + +
    +
    +
    + +
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    +
    + + +
    +
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    +
    +
    +
    Loading...
    +
    Searching...
    +
    No Matches
    +
    +
    +
    +
    + +
    +
    Deprecated List
    +
    +
    +
    +
    Member gridfire::GraphEngine::isStale (const NetIn &netIn) override
    +
    This method is deprecated and will be removed in future versions. Stale states are returned as part of the results of methods that require the ability to report them.
    +
    +
    +
    +
    + + + + diff --git a/docs/html/dir_048d8e0a5613c02d1dd32a8c2b4fae8e.html b/docs/html/dir_048d8e0a5613c02d1dd32a8c2b4fae8e.html index c90c6e67..ac550e5c 100644 --- a/docs/html/dir_048d8e0a5613c02d1dd32a8c2b4fae8e.html +++ b/docs/html/dir_048d8e0a5613c02d1dd32a8c2b4fae8e.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/dir_1ae9febcce3c81c54e014e2202672ae2.html b/docs/html/dir_1ae9febcce3c81c54e014e2202672ae2.html index 33af38d7..5065b98b 100644 --- a/docs/html/dir_1ae9febcce3c81c54e014e2202672ae2.html +++ b/docs/html/dir_1ae9febcce3c81c54e014e2202672ae2.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/dir_1c671bae89ad45c4f6571bd7c3fca7f2.html b/docs/html/dir_1c671bae89ad45c4f6571bd7c3fca7f2.html index efbeb734..17f003d9 100644 --- a/docs/html/dir_1c671bae89ad45c4f6571bd7c3fca7f2.html +++ b/docs/html/dir_1c671bae89ad45c4f6571bd7c3fca7f2.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/dir_1d1d50ce0d70b163d7d102a960190628.html b/docs/html/dir_1d1d50ce0d70b163d7d102a960190628.html index 6972d6ee..6b48aeff 100644 --- a/docs/html/dir_1d1d50ce0d70b163d7d102a960190628.html +++ b/docs/html/dir_1d1d50ce0d70b163d7d102a960190628.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/dir_230a420a279f78b45ea47b2d650bf1a7.html b/docs/html/dir_230a420a279f78b45ea47b2d650bf1a7.html index d0a7d598..37ddfc26 100644 --- a/docs/html/dir_230a420a279f78b45ea47b2d650bf1a7.html +++ b/docs/html/dir_230a420a279f78b45ea47b2d650bf1a7.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/dir_3626e0c0e3c5d7812d6b277dfa4ec364.html b/docs/html/dir_3626e0c0e3c5d7812d6b277dfa4ec364.html index 94e0ff27..7f352943 100644 --- a/docs/html/dir_3626e0c0e3c5d7812d6b277dfa4ec364.html +++ b/docs/html/dir_3626e0c0e3c5d7812d6b277dfa4ec364.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/dir_3c6e26120bd25666a475751afc8a34bc.html b/docs/html/dir_3c6e26120bd25666a475751afc8a34bc.html index e98f44d2..32c5d830 100644 --- a/docs/html/dir_3c6e26120bd25666a475751afc8a34bc.html +++ b/docs/html/dir_3c6e26120bd25666a475751afc8a34bc.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/dir_3cc0b3e3c66436f74054a789a4a47fbc.html b/docs/html/dir_3cc0b3e3c66436f74054a789a4a47fbc.html index 490a60b5..bce5618c 100644 --- a/docs/html/dir_3cc0b3e3c66436f74054a789a4a47fbc.html +++ b/docs/html/dir_3cc0b3e3c66436f74054a789a4a47fbc.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/dir_43d540904cac5d711ae55af9d63e6471.html b/docs/html/dir_43d540904cac5d711ae55af9d63e6471.html index 2ff8d6e5..a457b93d 100644 --- a/docs/html/dir_43d540904cac5d711ae55af9d63e6471.html +++ b/docs/html/dir_43d540904cac5d711ae55af9d63e6471.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/dir_49e56c817e5e54854c35e136979f97ca.html b/docs/html/dir_49e56c817e5e54854c35e136979f97ca.html index 149bcd07..922364a7 100644 --- a/docs/html/dir_49e56c817e5e54854c35e136979f97ca.html +++ b/docs/html/dir_49e56c817e5e54854c35e136979f97ca.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/dir_4eba3bf96e8b886928c6be1f4154164d.html b/docs/html/dir_4eba3bf96e8b886928c6be1f4154164d.html index a30cb2f3..b0446d6f 100644 --- a/docs/html/dir_4eba3bf96e8b886928c6be1f4154164d.html +++ b/docs/html/dir_4eba3bf96e8b886928c6be1f4154164d.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/dir_4fd0dc9a50f7a53e22cb356c650f915e.html b/docs/html/dir_4fd0dc9a50f7a53e22cb356c650f915e.html index 73d1ea11..11e08b47 100644 --- a/docs/html/dir_4fd0dc9a50f7a53e22cb356c650f915e.html +++ b/docs/html/dir_4fd0dc9a50f7a53e22cb356c650f915e.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/dir_5c0d64f70903e893b1efe571a4b8de29.html b/docs/html/dir_5c0d64f70903e893b1efe571a4b8de29.html index cc1035a8..4112ee44 100644 --- a/docs/html/dir_5c0d64f70903e893b1efe571a4b8de29.html +++ b/docs/html/dir_5c0d64f70903e893b1efe571a4b8de29.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/dir_64012712bac8d4927da7703e58c6c3c3.html b/docs/html/dir_64012712bac8d4927da7703e58c6c3c3.html index 9ca1043f..bd8f67ce 100644 --- a/docs/html/dir_64012712bac8d4927da7703e58c6c3c3.html +++ b/docs/html/dir_64012712bac8d4927da7703e58c6c3c3.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/dir_65bc51589f8002bfcb72faf47ab41180.html b/docs/html/dir_65bc51589f8002bfcb72faf47ab41180.html index ab10c183..3783ef28 100644 --- a/docs/html/dir_65bc51589f8002bfcb72faf47ab41180.html +++ b/docs/html/dir_65bc51589f8002bfcb72faf47ab41180.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/dir_67aa14af464fbd247881f6980be7deb5.html b/docs/html/dir_67aa14af464fbd247881f6980be7deb5.html index cdc4bf8f..529311c5 100644 --- a/docs/html/dir_67aa14af464fbd247881f6980be7deb5.html +++ b/docs/html/dir_67aa14af464fbd247881f6980be7deb5.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/dir_68267d1309a1af8e8297ef4c3efbcdba.html b/docs/html/dir_68267d1309a1af8e8297ef4c3efbcdba.html index 8a7daf60..c26f0b5b 100644 --- a/docs/html/dir_68267d1309a1af8e8297ef4c3efbcdba.html +++ b/docs/html/dir_68267d1309a1af8e8297ef4c3efbcdba.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/dir_6ccae78e9032a1b4db4873aea5f3b43d.html b/docs/html/dir_6ccae78e9032a1b4db4873aea5f3b43d.html index cf73e40a..2ad975be 100644 --- a/docs/html/dir_6ccae78e9032a1b4db4873aea5f3b43d.html +++ b/docs/html/dir_6ccae78e9032a1b4db4873aea5f3b43d.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/dir_6f67cad5a3dd5daef2b4bab22419acbf.html b/docs/html/dir_6f67cad5a3dd5daef2b4bab22419acbf.html index 4fa3a49c..f556f876 100644 --- a/docs/html/dir_6f67cad5a3dd5daef2b4bab22419acbf.html +++ b/docs/html/dir_6f67cad5a3dd5daef2b4bab22419acbf.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/dir_736d89e8e2b688d729ae4656e8c69720.html b/docs/html/dir_736d89e8e2b688d729ae4656e8c69720.html index fdfdbcce..4107e35a 100644 --- a/docs/html/dir_736d89e8e2b688d729ae4656e8c69720.html +++ b/docs/html/dir_736d89e8e2b688d729ae4656e8c69720.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/dir_7eae81c2ec58ffa76af06bb25bb86137.html b/docs/html/dir_7eae81c2ec58ffa76af06bb25bb86137.html index 4361d844..dc8bb798 100644 --- a/docs/html/dir_7eae81c2ec58ffa76af06bb25bb86137.html +++ b/docs/html/dir_7eae81c2ec58ffa76af06bb25bb86137.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/dir_80d0745b866022f2047f807b3376dff7.html b/docs/html/dir_80d0745b866022f2047f807b3376dff7.html index be4e267c..cab3f557 100644 --- a/docs/html/dir_80d0745b866022f2047f807b3376dff7.html +++ b/docs/html/dir_80d0745b866022f2047f807b3376dff7.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/dir_87d18a4dc5174905bfd7d2dc734defe6.html b/docs/html/dir_87d18a4dc5174905bfd7d2dc734defe6.html index 09a41786..fae4b933 100644 --- a/docs/html/dir_87d18a4dc5174905bfd7d2dc734defe6.html +++ b/docs/html/dir_87d18a4dc5174905bfd7d2dc734defe6.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/dir_897cfbcdbf2b76d535de4ec754728fa0.html b/docs/html/dir_897cfbcdbf2b76d535de4ec754728fa0.html index 6e36d4ef..948d6ef9 100644 --- a/docs/html/dir_897cfbcdbf2b76d535de4ec754728fa0.html +++ b/docs/html/dir_897cfbcdbf2b76d535de4ec754728fa0.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/dir_8e34b6fea5a3d13256b367f27bc2135d.html b/docs/html/dir_8e34b6fea5a3d13256b367f27bc2135d.html index dcd98783..62e434b2 100644 --- a/docs/html/dir_8e34b6fea5a3d13256b367f27bc2135d.html +++ b/docs/html/dir_8e34b6fea5a3d13256b367f27bc2135d.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -105,6 +105,10 @@ $(function(){initNavTree('dir_8e34b6fea5a3d13256b367f27bc2135d.html',''); initRe + + + + diff --git a/docs/html/dir_8e34b6fea5a3d13256b367f27bc2135d.js b/docs/html/dir_8e34b6fea5a3d13256b367f27bc2135d.js index 6c36881c..b1a7bab0 100644 --- a/docs/html/dir_8e34b6fea5a3d13256b367f27bc2135d.js +++ b/docs/html/dir_8e34b6fea5a3d13256b367f27bc2135d.js @@ -1,5 +1,7 @@ var dir_8e34b6fea5a3d13256b367f27bc2135d = [ + [ "general_composition.h", "general__composition_8h.html", "general__composition_8h" ], + [ "hashing.h", "hashing_8h.html", "hashing_8h" ], [ "logging.h", "logging_8h.html", "logging_8h" ], [ "table_format.h", "table__format_8h.html", "table__format_8h" ] ]; \ No newline at end of file diff --git a/docs/html/dir_902e06e9d82d80b06df7be6e417fa9ee.html b/docs/html/dir_902e06e9d82d80b06df7be6e417fa9ee.html index d397cf16..a2c4ad53 100644 --- a/docs/html/dir_902e06e9d82d80b06df7be6e417fa9ee.html +++ b/docs/html/dir_902e06e9d82d80b06df7be6e417fa9ee.html @@ -29,7 +29,7 @@ diff --git a/docs/html/dir_97105ebeaecd797c90bf23079fd9b0e6.html b/docs/html/dir_97105ebeaecd797c90bf23079fd9b0e6.html index 3acb270a..86eb78a5 100644 --- a/docs/html/dir_97105ebeaecd797c90bf23079fd9b0e6.html +++ b/docs/html/dir_97105ebeaecd797c90bf23079fd9b0e6.html @@ -29,7 +29,7 @@ diff --git a/docs/html/dir_9f35e0f3e3878d201f80e9b6c966a769.html b/docs/html/dir_9f35e0f3e3878d201f80e9b6c966a769.html index a1b7d456..025b8b09 100644 --- a/docs/html/dir_9f35e0f3e3878d201f80e9b6c966a769.html +++ b/docs/html/dir_9f35e0f3e3878d201f80e9b6c966a769.html @@ -29,7 +29,7 @@ diff --git a/docs/html/dir_a2537f6f0ba382cc4200a69fb7d9b7da.html b/docs/html/dir_a2537f6f0ba382cc4200a69fb7d9b7da.html index 22954bdf..013b2fd1 100644 --- a/docs/html/dir_a2537f6f0ba382cc4200a69fb7d9b7da.html +++ b/docs/html/dir_a2537f6f0ba382cc4200a69fb7d9b7da.html @@ -29,7 +29,7 @@ diff --git a/docs/html/dir_ab918a70d5de27403bd1202d71acc71b.html b/docs/html/dir_ab918a70d5de27403bd1202d71acc71b.html index 5b3a2719..097fd6c0 100644 --- a/docs/html/dir_ab918a70d5de27403bd1202d71acc71b.html +++ b/docs/html/dir_ab918a70d5de27403bd1202d71acc71b.html @@ -29,7 +29,7 @@ diff --git a/docs/html/dir_ad59de2d6f32552fa0ecb4acca2fbb0b.html b/docs/html/dir_ad59de2d6f32552fa0ecb4acca2fbb0b.html index 88968b4d..4153a4c1 100644 --- a/docs/html/dir_ad59de2d6f32552fa0ecb4acca2fbb0b.html +++ b/docs/html/dir_ad59de2d6f32552fa0ecb4acca2fbb0b.html @@ -29,7 +29,7 @@ diff --git a/docs/html/dir_aff155d61c3b73b9ab7dcdc908c4d49e.html b/docs/html/dir_aff155d61c3b73b9ab7dcdc908c4d49e.html index 15c42888..e2cc5bd0 100644 --- a/docs/html/dir_aff155d61c3b73b9ab7dcdc908c4d49e.html +++ b/docs/html/dir_aff155d61c3b73b9ab7dcdc908c4d49e.html @@ -29,7 +29,7 @@ diff --git a/docs/html/dir_b0553efdd4ad7f265c0580564941af0c.html b/docs/html/dir_b0553efdd4ad7f265c0580564941af0c.html index e5f4a222..21c97937 100644 --- a/docs/html/dir_b0553efdd4ad7f265c0580564941af0c.html +++ b/docs/html/dir_b0553efdd4ad7f265c0580564941af0c.html @@ -29,7 +29,7 @@ diff --git a/docs/html/dir_b0856f6b0d80ccb263b2f415c91f9e17.html b/docs/html/dir_b0856f6b0d80ccb263b2f415c91f9e17.html index 8d65f7da..76e66d34 100644 --- a/docs/html/dir_b0856f6b0d80ccb263b2f415c91f9e17.html +++ b/docs/html/dir_b0856f6b0d80ccb263b2f415c91f9e17.html @@ -29,7 +29,7 @@ diff --git a/docs/html/dir_b854c27c088682f074a57cfa949846df.html b/docs/html/dir_b854c27c088682f074a57cfa949846df.html index 75cc85a0..fef23837 100644 --- a/docs/html/dir_b854c27c088682f074a57cfa949846df.html +++ b/docs/html/dir_b854c27c088682f074a57cfa949846df.html @@ -29,7 +29,7 @@ diff --git a/docs/html/dir_b893969db6254951682857c720518fa8.html b/docs/html/dir_b893969db6254951682857c720518fa8.html index 7c6a2fed..313d24ac 100644 --- a/docs/html/dir_b893969db6254951682857c720518fa8.html +++ b/docs/html/dir_b893969db6254951682857c720518fa8.html @@ -29,7 +29,7 @@ diff --git a/docs/html/dir_bf5ef66fceb9aacde9848923f7632729.html b/docs/html/dir_bf5ef66fceb9aacde9848923f7632729.html index 9e1d031f..9b320493 100644 --- a/docs/html/dir_bf5ef66fceb9aacde9848923f7632729.html +++ b/docs/html/dir_bf5ef66fceb9aacde9848923f7632729.html @@ -29,7 +29,7 @@ diff --git a/docs/html/dir_bfff093b02c380358955f421b7f67de5.html b/docs/html/dir_bfff093b02c380358955f421b7f67de5.html index a4f4f7aa..ac6949ae 100644 --- a/docs/html/dir_bfff093b02c380358955f421b7f67de5.html +++ b/docs/html/dir_bfff093b02c380358955f421b7f67de5.html @@ -29,7 +29,7 @@ diff --git a/docs/html/dir_c34d5e8363cf0aa3fabc4f3fad3412a4.html b/docs/html/dir_c34d5e8363cf0aa3fabc4f3fad3412a4.html index 7aab31bc..fd2a3fdf 100644 --- a/docs/html/dir_c34d5e8363cf0aa3fabc4f3fad3412a4.html +++ b/docs/html/dir_c34d5e8363cf0aa3fabc4f3fad3412a4.html @@ -29,7 +29,7 @@ diff --git a/docs/html/dir_c73541f51459c9e567d01a066f229f1c.html b/docs/html/dir_c73541f51459c9e567d01a066f229f1c.html index f9724c6d..e9299399 100644 --- a/docs/html/dir_c73541f51459c9e567d01a066f229f1c.html +++ b/docs/html/dir_c73541f51459c9e567d01a066f229f1c.html @@ -29,7 +29,7 @@ diff --git a/docs/html/dir_c85d3e3c5052e9ad9ce18c6863244a25.html b/docs/html/dir_c85d3e3c5052e9ad9ce18c6863244a25.html index 92704a94..b353db41 100644 --- a/docs/html/dir_c85d3e3c5052e9ad9ce18c6863244a25.html +++ b/docs/html/dir_c85d3e3c5052e9ad9ce18c6863244a25.html @@ -29,7 +29,7 @@ diff --git a/docs/html/dir_c99e86cd0291aa23d2204e664fe571c1.html b/docs/html/dir_c99e86cd0291aa23d2204e664fe571c1.html index 09016e2d..9bd550b3 100644 --- a/docs/html/dir_c99e86cd0291aa23d2204e664fe571c1.html +++ b/docs/html/dir_c99e86cd0291aa23d2204e664fe571c1.html @@ -29,7 +29,7 @@ diff --git a/docs/html/dir_cd87a60aa1dbf4ee960e0533fd7a9743.html b/docs/html/dir_cd87a60aa1dbf4ee960e0533fd7a9743.html index d5e64b46..a6dd43ad 100644 --- a/docs/html/dir_cd87a60aa1dbf4ee960e0533fd7a9743.html +++ b/docs/html/dir_cd87a60aa1dbf4ee960e0533fd7a9743.html @@ -29,7 +29,7 @@ @@ -107,6 +107,8 @@ $(function(){initNavTree('dir_cd87a60aa1dbf4ee960e0533fd7a9743.html',''); initRe Files + +

    Files

     general_composition.h
     
     hashing.h
     
     logging.h
     
     table_format.h
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
     error_engine.h
     
     error_utils.h
     
     exceptions.h
     
    diff --git a/docs/html/dir_cd87a60aa1dbf4ee960e0533fd7a9743.js b/docs/html/dir_cd87a60aa1dbf4ee960e0533fd7a9743.js index 91b7f39a..aac57677 100644 --- a/docs/html/dir_cd87a60aa1dbf4ee960e0533fd7a9743.js +++ b/docs/html/dir_cd87a60aa1dbf4ee960e0533fd7a9743.js @@ -1,5 +1,6 @@ var dir_cd87a60aa1dbf4ee960e0533fd7a9743 = [ [ "error_engine.h", "error__engine_8h.html", "error__engine_8h" ], + [ "error_utils.h", "error__utils_8h.html", "error__utils_8h" ], [ "exceptions.h", "exceptions_8h.html", null ] ]; \ No newline at end of file diff --git a/docs/html/dir_d0a49494bbb6e91de214e6669adf5efa.html b/docs/html/dir_d0a49494bbb6e91de214e6669adf5efa.html index 81959ecf..49d17412 100644 --- a/docs/html/dir_d0a49494bbb6e91de214e6669adf5efa.html +++ b/docs/html/dir_d0a49494bbb6e91de214e6669adf5efa.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/dir_d2ba15782ddae84c3d0c5f0e63bda236.html b/docs/html/dir_d2ba15782ddae84c3d0c5f0e63bda236.html index 06676fcb..7c87e801 100644 --- a/docs/html/dir_d2ba15782ddae84c3d0c5f0e63bda236.html +++ b/docs/html/dir_d2ba15782ddae84c3d0c5f0e63bda236.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/dir_d5492b42d970deba31f48df1b35a6c47.html b/docs/html/dir_d5492b42d970deba31f48df1b35a6c47.html index a03d7680..d4bd03bc 100644 --- a/docs/html/dir_d5492b42d970deba31f48df1b35a6c47.html +++ b/docs/html/dir_d5492b42d970deba31f48df1b35a6c47.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/dir_d70391a28a381da2f0629437a1b6db28.html b/docs/html/dir_d70391a28a381da2f0629437a1b6db28.html index 710e6548..69e7a600 100644 --- a/docs/html/dir_d70391a28a381da2f0629437a1b6db28.html +++ b/docs/html/dir_d70391a28a381da2f0629437a1b6db28.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/dir_da65b9a371696ae0281f77edf1c03876.html b/docs/html/dir_da65b9a371696ae0281f77edf1c03876.html index ef002016..56c24c89 100644 --- a/docs/html/dir_da65b9a371696ae0281f77edf1c03876.html +++ b/docs/html/dir_da65b9a371696ae0281f77edf1c03876.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/dir_dd8201c056cb17022d2864e6e5aa368d.html b/docs/html/dir_dd8201c056cb17022d2864e6e5aa368d.html index 76cfc138..cbbe1abf 100644 --- a/docs/html/dir_dd8201c056cb17022d2864e6e5aa368d.html +++ b/docs/html/dir_dd8201c056cb17022d2864e6e5aa368d.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/dir_e2a8863ee8e7cd9122c04bdba1c35a3b.html b/docs/html/dir_e2a8863ee8e7cd9122c04bdba1c35a3b.html index e888a2b0..3f340947 100644 --- a/docs/html/dir_e2a8863ee8e7cd9122c04bdba1c35a3b.html +++ b/docs/html/dir_e2a8863ee8e7cd9122c04bdba1c35a3b.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/dir_e87948a39c0c6c3f66d9f5f967ab86bd.html b/docs/html/dir_e87948a39c0c6c3f66d9f5f967ab86bd.html index 2bfc34e9..cb09dc88 100644 --- a/docs/html/dir_e87948a39c0c6c3f66d9f5f967ab86bd.html +++ b/docs/html/dir_e87948a39c0c6c3f66d9f5f967ab86bd.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/dir_f2d7b0c77cb2532170ac94ead6e4ba70.html b/docs/html/dir_f2d7b0c77cb2532170ac94ead6e4ba70.html index 61ca5e28..2f4c7daa 100644 --- a/docs/html/dir_f2d7b0c77cb2532170ac94ead6e4ba70.html +++ b/docs/html/dir_f2d7b0c77cb2532170ac94ead6e4ba70.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/dir_f4383b1846ef599868e873d917f1344c.html b/docs/html/dir_f4383b1846ef599868e873d917f1344c.html index ae42d4dd..1d4efa43 100644 --- a/docs/html/dir_f4383b1846ef599868e873d917f1344c.html +++ b/docs/html/dir_f4383b1846ef599868e873d917f1344c.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/dir_f575fd282ecf3769a887e0c3d3cafd55.html b/docs/html/dir_f575fd282ecf3769a887e0c3d3cafd55.html index 90d5b367..48ceb5c8 100644 --- a/docs/html/dir_f575fd282ecf3769a887e0c3d3cafd55.html +++ b/docs/html/dir_f575fd282ecf3769a887e0c3d3cafd55.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/dir_fe5109f07276e0a4a472af6b22fd99c7.html b/docs/html/dir_fe5109f07276e0a4a472af6b22fd99c7.html index 10d72452..3e27267a 100644 --- a/docs/html/dir_fe5109f07276e0a4a472af6b22fd99c7.html +++ b/docs/html/dir_fe5109f07276e0a4a472af6b22fd99c7.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/dir_fe7d6b610561b6ccbae8c0cd892464cf.html b/docs/html/dir_fe7d6b610561b6ccbae8c0cd892464cf.html index b93617ad..3c5bd81d 100644 --- a/docs/html/dir_fe7d6b610561b6ccbae8c0cd892464cf.html +++ b/docs/html/dir_fe7d6b610561b6ccbae8c0cd892464cf.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/dir_fedd162cb41c94f7e299c266e75251fd.html b/docs/html/dir_fedd162cb41c94f7e299c266e75251fd.html index fb2c0ac9..6e05f674 100644 --- a/docs/html/dir_fedd162cb41c94f7e299c266e75251fd.html +++ b/docs/html/dir_fedd162cb41c94f7e299c266e75251fd.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/doxygen_crawl.html b/docs/html/doxygen_crawl.html index 262a0799..0cc61d5f 100644 --- a/docs/html/doxygen_crawl.html +++ b/docs/html/doxygen_crawl.html @@ -17,21 +17,24 @@ - - - + + + + + + - - + - + + + - - + @@ -51,8 +54,8 @@ - + @@ -70,6 +73,9 @@ + + + @@ -96,6 +102,7 @@ + @@ -105,6 +112,7 @@ + @@ -113,6 +121,7 @@ + @@ -124,45 +133,48 @@ + + + + + - - - + - - + + + - @@ -170,9 +182,12 @@ + + + @@ -194,9 +209,9 @@ + - @@ -204,24 +219,28 @@ - + - + + + - + + + @@ -231,21 +250,23 @@ + + + - @@ -253,21 +274,30 @@ - + + + + + + + + + + - + @@ -275,9 +305,10 @@ - + + @@ -285,26 +316,29 @@ + + - - - + + + + @@ -314,6 +348,7 @@ + @@ -323,14 +358,18 @@ + + + - + + @@ -352,11 +391,11 @@ + - - - + + @@ -398,6 +437,7 @@ + @@ -426,39 +466,67 @@ + + + + + + - + + + + + + + + - - + + - + + + + + - + + + + + + + + + + + + @@ -482,11 +550,12 @@ - + + @@ -531,11 +600,11 @@ - + + - - + @@ -550,9 +619,11 @@ + + @@ -584,8 +655,10 @@ + + @@ -605,6 +678,7 @@ + @@ -699,6 +773,7 @@ + @@ -743,14 +818,12 @@ + - - - @@ -758,6 +831,8 @@ + + @@ -766,6 +841,7 @@ + @@ -779,6 +855,10 @@ + + + + @@ -789,6 +869,7 @@ + @@ -796,12 +877,14 @@ + + @@ -814,6 +897,7 @@ + @@ -821,8 +905,10 @@ + + @@ -841,9 +927,11 @@ + + @@ -860,10 +948,35 @@ + + + + + + + + + + + + + + + + + + + + + + + + + @@ -876,6 +989,7 @@ + @@ -896,6 +1010,7 @@ + @@ -911,6 +1026,7 @@ + @@ -941,6 +1057,7 @@ + @@ -1002,18 +1119,32 @@ + + + + + + + + + + + + + + @@ -1036,6 +1167,7 @@ + @@ -1123,11 +1255,13 @@ + + @@ -1212,22 +1346,25 @@ - + + - - + - + + - - + + + + + - @@ -1238,9 +1375,23 @@ - + + + + + + + + + + + + + + + @@ -1327,6 +1478,8 @@ + + @@ -1342,8 +1495,18 @@ + + + + + + + + + + @@ -1445,10 +1608,12 @@ + + @@ -1500,8 +1665,11 @@ + + + @@ -1633,7 +1801,6 @@ - @@ -1651,12 +1818,12 @@ - - - - - - + + + + + + @@ -1722,20 +1889,18 @@ + - + + - - - - @@ -1745,6 +1910,9 @@ + + + diff --git a/docs/html/dynamic__engine__diagnostics_8cpp.html b/docs/html/dynamic__engine__diagnostics_8cpp.html index c82a3dbe..e0081932 100644 --- a/docs/html/dynamic__engine__diagnostics_8cpp.html +++ b/docs/html/dynamic__engine__diagnostics_8cpp.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/dynamic__engine__diagnostics_8h.html b/docs/html/dynamic__engine__diagnostics_8h.html index 2c4b07bf..2ce0760e 100644 --- a/docs/html/dynamic__engine__diagnostics_8h.html +++ b/docs/html/dynamic__engine__diagnostics_8h.html @@ -29,7 +29,7 @@ -
    +
    +
    + +

    ◆ register_engine_building_type_bindings()

    + +
    +
    + + + + + + + +
    void register_engine_building_type_bindings (pybind11::module & m)
    +
    + +
    +
    + +

    ◆ register_engine_construction_bindings()

    + +
    +
    + + + + + + + +
    void register_engine_construction_bindings (pybind11::module & m)
    +
    + +
    +
    + +

    ◆ register_engine_diagnostic_bindings()

    + +
    +
    + + + + + + + +
    void register_engine_diagnostic_bindings (pybind11::module & m)
    +
    + +
    +
    + +

    ◆ register_engine_priming_bindings()

    + +
    +
    + + + + + + + +
    void register_engine_priming_bindings (pybind11::module & m)
    +
    + +
    +
    + +

    ◆ register_engine_procedural_bindings()

    + +
    +
    + + + + + + + +
    void register_engine_procedural_bindings (pybind11::module & m)
    +
    + +
    +
    + +

    ◆ register_engine_reporting_type_bindings()

    + +
    +
    + + + + + + + +
    void register_engine_reporting_type_bindings (pybind11::module & m)
    +
    + +
    +
    + +

    ◆ register_engine_type_bindings()

    + +
    +
    + + + + + + + +
    void register_engine_type_bindings (pybind11::module & m)
    +
    +
    diff --git a/docs/html/engine_2bindings_8cpp.js b/docs/html/engine_2bindings_8cpp.js index a481736b..ad24585e 100644 --- a/docs/html/engine_2bindings_8cpp.js +++ b/docs/html/engine_2bindings_8cpp.js @@ -6,5 +6,12 @@ var engine_2bindings_8cpp = [ "con_stype_register_graph_engine_bindings", "engine_2bindings_8cpp.html#a73d427751e6a64952d52e7c2cc84d065", null ], [ "register_base_engine_bindings", "engine_2bindings_8cpp.html#a766b8bf2c08f2e81486752261ec89642", null ], [ "register_engine_bindings", "engine_2bindings_8cpp.html#ac2df9cd0e71d39b97ddd47b3e7024b0c", null ], + [ "register_engine_building_type_bindings", "engine_2bindings_8cpp.html#a3ec1c283d60332e61affc063d0e1639f", null ], + [ "register_engine_construction_bindings", "engine_2bindings_8cpp.html#aad8d3f0fef8c740df9a98c53800190c9", null ], + [ "register_engine_diagnostic_bindings", "engine_2bindings_8cpp.html#a1f595355667895199f3c3c39383fad33", null ], + [ "register_engine_priming_bindings", "engine_2bindings_8cpp.html#a3974cc99c2970c71b9a5fca0217f5b6e", null ], + [ "register_engine_procedural_bindings", "engine_2bindings_8cpp.html#ae3c140c5303eeaa6e02b3a3c4d4d4c36", null ], + [ "register_engine_reporting_type_bindings", "engine_2bindings_8cpp.html#a66ce33948e3d9d5837b244298c8ca2b6", null ], + [ "register_engine_type_bindings", "engine_2bindings_8cpp.html#a2fe8fd1a44f7b623fdf51e453e5149b9", null ], [ "register_engine_view_bindings", "engine_2bindings_8cpp.html#ac12de48f4164b679dd7afb03c83ec4bf", null ] ]; \ No newline at end of file diff --git a/docs/html/engine_2bindings_8h.html b/docs/html/engine_2bindings_8h.html index b3104797..10f24852 100644 --- a/docs/html/engine_2bindings_8h.html +++ b/docs/html/engine_2bindings_8h.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -120,6 +120,20 @@ Functions   void con_stype_register_graph_engine_bindings (const pybind11::module &m)   +void register_engine_diagnostic_bindings (pybind11::module &m) +  +void register_engine_procedural_bindings (pybind11::module &m) +  +void register_engine_construction_bindings (pybind11::module &m) +  +void register_engine_priming_bindings (pybind11::module &m) +  +void register_engine_type_bindings (pybind11::module &m) +  +void register_engine_building_type_bindings (pybind11::module &m) +  +void register_engine_reporting_type_bindings (pybind11::module &m) + 

    Function Documentation

    @@ -205,6 +219,125 @@ Functions
    +
    +
    + +

    ◆ register_engine_building_type_bindings()

    + +
    +
    + + + + + + + +
    void register_engine_building_type_bindings (pybind11::module & m)
    +
    + +
    +
    + +

    ◆ register_engine_construction_bindings()

    + +
    +
    + + + + + + + +
    void register_engine_construction_bindings (pybind11::module & m)
    +
    + +
    +
    + +

    ◆ register_engine_diagnostic_bindings()

    + +
    +
    + + + + + + + +
    void register_engine_diagnostic_bindings (pybind11::module & m)
    +
    + +
    +
    + +

    ◆ register_engine_priming_bindings()

    + +
    +
    + + + + + + + +
    void register_engine_priming_bindings (pybind11::module & m)
    +
    + +
    +
    + +

    ◆ register_engine_procedural_bindings()

    + +
    +
    + + + + + + + +
    void register_engine_procedural_bindings (pybind11::module & m)
    +
    + +
    +
    + +

    ◆ register_engine_reporting_type_bindings()

    + +
    +
    + + + + + + + +
    void register_engine_reporting_type_bindings (pybind11::module & m)
    +
    + +
    +
    + +

    ◆ register_engine_type_bindings()

    + +
    +
    + + + + + + + +
    void register_engine_type_bindings (pybind11::module & m)
    +
    +
    diff --git a/docs/html/engine_2bindings_8h.js b/docs/html/engine_2bindings_8h.js index 918be22e..4bad1318 100644 --- a/docs/html/engine_2bindings_8h.js +++ b/docs/html/engine_2bindings_8h.js @@ -5,5 +5,12 @@ var engine_2bindings_8h = [ "con_stype_register_graph_engine_bindings", "engine_2bindings_8h.html#a73d427751e6a64952d52e7c2cc84d065", null ], [ "register_base_engine_bindings", "engine_2bindings_8h.html#a766b8bf2c08f2e81486752261ec89642", null ], [ "register_engine_bindings", "engine_2bindings_8h.html#a73a2ec4150b3954550f16b97102ec993", null ], + [ "register_engine_building_type_bindings", "engine_2bindings_8h.html#a3ec1c283d60332e61affc063d0e1639f", null ], + [ "register_engine_construction_bindings", "engine_2bindings_8h.html#aad8d3f0fef8c740df9a98c53800190c9", null ], + [ "register_engine_diagnostic_bindings", "engine_2bindings_8h.html#a1f595355667895199f3c3c39383fad33", null ], + [ "register_engine_priming_bindings", "engine_2bindings_8h.html#a3974cc99c2970c71b9a5fca0217f5b6e", null ], + [ "register_engine_procedural_bindings", "engine_2bindings_8h.html#ae3c140c5303eeaa6e02b3a3c4d4d4c36", null ], + [ "register_engine_reporting_type_bindings", "engine_2bindings_8h.html#a66ce33948e3d9d5837b244298c8ca2b6", null ], + [ "register_engine_type_bindings", "engine_2bindings_8h.html#a2fe8fd1a44f7b623fdf51e453e5149b9", null ], [ "register_engine_view_bindings", "engine_2bindings_8h.html#ac12de48f4164b679dd7afb03c83ec4bf", null ] ]; \ No newline at end of file diff --git a/docs/html/engine_8h.html b/docs/html/engine_8h.html index 5939a33c..67534239 100644 --- a/docs/html/engine_8h.html +++ b/docs/html/engine_8h.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -154,7 +154,7 @@ GraphEngine Example
    // Create a GraphEngine
    gridfire::GraphEngine engine(composition);
    -
    gridfire::GraphEngine
    A reaction network engine that uses a graph-based representation.
    Definition engine_graph.h:97
    +
    gridfire::GraphEngine
    A reaction network engine that uses a graph-based representation.
    Definition engine_graph.h:99
    engine_graph.h

    AdaptiveEngineView Example

    @@ -189,7 +189,7 @@ DefinedEngineView Example
    // Create a DefinedEngineView
    std::vector<std::string> peNames = {"p(p,e+)d", "he4(a,g)be8"};
    gridfire::DefinedEngineView engine(peNames, baseEngine);
    -
    gridfire::DefinedEngineView
    Definition engine_defined.h:16
    +
    gridfire::DefinedEngineView
    Definition engine_defined.h:17
    engine_defined.h

    MultiscalePartitioningEngineView Example

    @@ -224,7 +224,7 @@ NetworkPrimingEngineView Example
    // Create a NetworkPrimingEngineView
    std::string primingSymbol = "p";
    gridfire::NetworkPrimingEngineView engine(primingSymbol, baseEngine);
    -
    gridfire::NetworkPrimingEngineView
    Provides a view of a DynamicEngine filtered to reactions involving a specified priming species.
    Definition engine_priming.h:28
    +
    gridfire::NetworkPrimingEngineView
    Provides a view of a DynamicEngine filtered to reactions involving a specified priming species.
    Definition engine_priming.h:26
    engine_priming.h
    diff --git a/docs/html/engine__abstract_8h.html b/docs/html/engine__abstract_8h.html index 3b9ef391..adb2257e 100644 --- a/docs/html/engine__abstract_8h.html +++ b/docs/html/engine__abstract_8h.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/engine__adaptive_8cpp.html b/docs/html/engine__adaptive_8cpp.html index 761c4bc6..c4a4282f 100644 --- a/docs/html/engine__adaptive_8cpp.html +++ b/docs/html/engine__adaptive_8cpp.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/engine__adaptive_8h.html b/docs/html/engine__adaptive_8h.html index d8083594..71e03b2c 100644 --- a/docs/html/engine__adaptive_8h.html +++ b/docs/html/engine__adaptive_8h.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/engine__approx8_8cpp.html b/docs/html/engine__approx8_8cpp.html index 4ecb30aa..e35f205f 100644 --- a/docs/html/engine__approx8_8cpp.html +++ b/docs/html/engine__approx8_8cpp.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/engine__approx8_8h.html b/docs/html/engine__approx8_8h.html index 35ea9d1e..c33bfc85 100644 --- a/docs/html/engine__approx8_8h.html +++ b/docs/html/engine__approx8_8h.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/engine__defined_8cpp.html b/docs/html/engine__defined_8cpp.html index c202d6c0..d5628970 100644 --- a/docs/html/engine__defined_8cpp.html +++ b/docs/html/engine__defined_8cpp.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -105,11 +105,13 @@ $(function(){initNavTree('engine__defined_8cpp.html',''); initResizable(true); }
    #include "gridfire/engine/views/engine_defined.h"
    +#include "gridfire/engine/engine_graph.h"
    #include <ranges>
    #include "quill/LogMacros.h"
    #include <string>
    #include <vector>
    #include <unordered_set>
    +#include <set>
    #include <stdexcept>
    #include <unordered_map>
    #include <utility>
    diff --git a/docs/html/engine__defined_8h.html b/docs/html/engine__defined_8h.html index ceba7651..44949a6c 100644 --- a/docs/html/engine__defined_8h.html +++ b/docs/html/engine__defined_8h.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -107,6 +107,7 @@ $(function(){initNavTree('engine__defined_8h.html',''); initResizable(true); });
    #include "gridfire/engine/views/engine_view_abstract.h"
    #include "gridfire/engine/engine_abstract.h"
    +#include "gridfire/engine/engine_graph.h"
    #include "gridfire/io/network_file.h"
    #include "gridfire/network.h"
    #include "fourdst/config/config.h"
    diff --git a/docs/html/engine__graph_8cpp.html b/docs/html/engine__graph_8cpp.html index 4d29bcc5..18452b34 100644 --- a/docs/html/engine__graph_8cpp.html +++ b/docs/html/engine__graph_8cpp.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -111,6 +111,8 @@ $(function(){initNavTree('engine__graph_8cpp.html',''); initResizable(true); }); #include "gridfire/engine/procedures/priming.h"
    #include "gridfire/partition/partition_ground.h"
    #include "gridfire/engine/procedures/construction.h"
    +#include "gridfire/utils/hashing.h"
    +#include "gridfire/utils/table_format.h"
    #include "fourdst/composition/species.h"
    #include "fourdst/composition/atomicSpecies.h"
    #include "quill/LogMacros.h"
    diff --git a/docs/html/engine__graph_8h.html b/docs/html/engine__graph_8h.html index e68fd966..bcbf6c43 100644 --- a/docs/html/engine__graph_8h.html +++ b/docs/html/engine__graph_8h.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -123,6 +123,7 @@ $(function(){initNavTree('engine__graph_8h.html',''); initResizable(true); }); #include <vector>
    #include <memory>
    #include <ranges>
    +#include <functional>
    #include <boost/numeric/ublas/matrix_sparse.hpp>
    #include "cppad/cppad.hpp"
    #include "cppad/utility/sparse_rc.hpp"
    diff --git a/docs/html/engine__multiscale_8cpp.html b/docs/html/engine__multiscale_8cpp.html index 0cb344fc..6b5b5160 100644 --- a/docs/html/engine__multiscale_8cpp.html +++ b/docs/html/engine__multiscale_8cpp.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -107,11 +107,13 @@ $(function(){initNavTree('engine__multiscale_8cpp.html',''); initResizable(true)
    #include "gridfire/engine/views/engine_multiscale.h"
    #include "gridfire/exceptions/error_engine.h"
    #include "gridfire/engine/procedures/priming.h"
    +#include "gridfire/utils/general_composition.h"
    #include <stdexcept>
    #include <vector>
    #include <ranges>
    #include <unordered_map>
    #include <unordered_set>
    +#include <fstream>
    #include <queue>
    #include <algorithm>
    #include "quill/LogMacros.h"
    diff --git a/docs/html/engine__multiscale_8h.html b/docs/html/engine__multiscale_8h.html index 5f86b444..c38e4984 100644 --- a/docs/html/engine__multiscale_8h.html +++ b/docs/html/engine__multiscale_8h.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/engine__partitioning__trigger_8cpp.html b/docs/html/engine__partitioning__trigger_8cpp.html index b2d1b8f0..309c22ec 100644 --- a/docs/html/engine__partitioning__trigger_8cpp.html +++ b/docs/html/engine__partitioning__trigger_8cpp.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/engine__partitioning__trigger_8h.html b/docs/html/engine__partitioning__trigger_8h.html index 1fb2e2dd..7fb52bda 100644 --- a/docs/html/engine__partitioning__trigger_8h.html +++ b/docs/html/engine__partitioning__trigger_8h.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -128,6 +128,8 @@ Classes class  gridfire::trigger::solver::CVODE::TimestepCollapseTrigger  Triggers when the timestep deviates from its recent average beyond a threshold. More...
      +class  gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger +  diff --git a/docs/html/engine__partitioning__trigger_8h.js b/docs/html/engine__partitioning__trigger_8h.js index 9525abb6..77352210 100644 --- a/docs/html/engine__partitioning__trigger_8h.js +++ b/docs/html/engine__partitioning__trigger_8h.js @@ -3,5 +3,6 @@ var engine__partitioning__trigger_8h = [ "gridfire::trigger::solver::CVODE::SimulationTimeTrigger", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger" ], [ "gridfire::trigger::solver::CVODE::OffDiagonalTrigger", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger" ], [ "gridfire::trigger::solver::CVODE::TimestepCollapseTrigger", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger" ], + [ "gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.html", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger" ], [ "gridfire::trigger::solver::CVODE::makeEnginePartitioningTrigger", "namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html#a26555ea09be620dabc5f9644be8f9908", null ] ]; \ No newline at end of file diff --git a/docs/html/engine__priming_8cpp.html b/docs/html/engine__priming_8cpp.html index 2a3b86da..7a5f4e76 100644 --- a/docs/html/engine__priming_8cpp.html +++ b/docs/html/engine__priming_8cpp.html @@ -29,7 +29,7 @@ diff --git a/docs/html/engine__priming_8h.html b/docs/html/engine__priming_8h.html index d093b446..ddf17eff 100644 --- a/docs/html/engine__priming_8h.html +++ b/docs/html/engine__priming_8h.html @@ -29,7 +29,7 @@ @@ -105,8 +105,7 @@ $(function(){initNavTree('engine__priming_8h.html',''); initResizable(true); });
    engine_priming.h File Reference
    -
    #include "gridfire/engine/engine_abstract.h"
    -#include "gridfire/engine/views/engine_defined.h"
    +
    #include "gridfire/engine/views/engine_defined.h"
    #include "fourdst/logging/logging.h"
    #include "fourdst/composition/atomicSpecies.h"
    #include "quill/Logger.h"
    diff --git a/docs/html/engine__procedures_8h.html b/docs/html/engine__procedures_8h.html index 452649b0..ac221e83 100644 --- a/docs/html/engine__procedures_8h.html +++ b/docs/html/engine__procedures_8h.html @@ -29,7 +29,7 @@
    diff --git a/docs/html/engine__types_8h.html b/docs/html/engine__types_8h.html index 6e9b97d9..0015c775 100644 --- a/docs/html/engine__types_8h.html +++ b/docs/html/engine__types_8h.html @@ -29,7 +29,7 @@ diff --git a/docs/html/engine__view__abstract_8h.html b/docs/html/engine__view__abstract_8h.html index cfae0a77..f100520b 100644 --- a/docs/html/engine__view__abstract_8h.html +++ b/docs/html/engine__view__abstract_8h.html @@ -29,7 +29,7 @@ diff --git a/docs/html/engine__views_8h.html b/docs/html/engine__views_8h.html index 97ef41d2..76873010 100644 --- a/docs/html/engine__views_8h.html +++ b/docs/html/engine__views_8h.html @@ -29,7 +29,7 @@ diff --git a/docs/html/error__engine_8h.html b/docs/html/error__engine_8h.html index 1f6282cb..3a71b985 100644 --- a/docs/html/error__engine_8h.html +++ b/docs/html/error__engine_8h.html @@ -29,7 +29,7 @@ @@ -107,6 +107,7 @@ $(function(){initNavTree('error__engine_8h.html',''); initResizable(true); });
    #include <exception>
    #include <string>
    +#include <utility>
    #include <vector>

    Namespaces
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    + + + + + + + + + +

    @@ -125,6 +126,16 @@ Classes

     
    class  gridfire::exceptions::UnableToSetNetworkReactionsError
     
    class  gridfire::exceptions::JacobianError
     
    class  gridfire::exceptions::StaleJacobianError
     
    class  gridfire::exceptions::UninitializedJacobianError
     
    class  gridfire::exceptions::UnknownJacobianError
     
    class  gridfire::exceptions::BadCollectionError
     
    diff --git a/docs/html/error__engine_8h.js b/docs/html/error__engine_8h.js index d7150734..5efa78da 100644 --- a/docs/html/error__engine_8h.js +++ b/docs/html/error__engine_8h.js @@ -6,5 +6,10 @@ var error__engine_8h = [ "gridfire::exceptions::StaleEngineError", "classgridfire_1_1exceptions_1_1_stale_engine_error.html", "classgridfire_1_1exceptions_1_1_stale_engine_error" ], [ "gridfire::exceptions::FailedToPartitionEngineError", "classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html", "classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error" ], [ "gridfire::exceptions::NetworkResizedError", "classgridfire_1_1exceptions_1_1_network_resized_error.html", "classgridfire_1_1exceptions_1_1_network_resized_error" ], - [ "gridfire::exceptions::UnableToSetNetworkReactionsError", "classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html", "classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error" ] + [ "gridfire::exceptions::UnableToSetNetworkReactionsError", "classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html", "classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error" ], + [ "gridfire::exceptions::JacobianError", "classgridfire_1_1exceptions_1_1_jacobian_error.html", null ], + [ "gridfire::exceptions::StaleJacobianError", "classgridfire_1_1exceptions_1_1_stale_jacobian_error.html", "classgridfire_1_1exceptions_1_1_stale_jacobian_error" ], + [ "gridfire::exceptions::UninitializedJacobianError", "classgridfire_1_1exceptions_1_1_uninitialized_jacobian_error.html", "classgridfire_1_1exceptions_1_1_uninitialized_jacobian_error" ], + [ "gridfire::exceptions::UnknownJacobianError", "classgridfire_1_1exceptions_1_1_unknown_jacobian_error.html", "classgridfire_1_1exceptions_1_1_unknown_jacobian_error" ], + [ "gridfire::exceptions::BadCollectionError", "classgridfire_1_1exceptions_1_1_bad_collection_error.html", "classgridfire_1_1exceptions_1_1_bad_collection_error" ] ]; \ No newline at end of file diff --git a/docs/html/error__utils_8h.html b/docs/html/error__utils_8h.html new file mode 100644 index 00000000..99ec54af --- /dev/null +++ b/docs/html/error__utils_8h.html @@ -0,0 +1,136 @@ + + + + + + + +GridFire: src/include/gridfire/exceptions/error_utils.h File Reference + + + + + + + + + + + + + + + + + +
    +
    +

    Namespaces

    + + + + + +
    +
    GridFire v0.7.0-alpha +
    +
    General Purpose Nuclear Network
    +
    +
    + + + + + + + + +
    +
    + +
    +
    +
    + +
    + +
    +
    + + +
    +
    +
    +
    +
    +
    Loading...
    +
    Searching...
    +
    No Matches
    +
    +
    +
    +
    + +
    +
    +Classes | +Namespaces
    +
    error_utils.h File Reference
    +
    +
    +
    #include <exception>
    +#include <string>
    +#include <utility>
    +
    + + + + + +

    +Classes

    class  gridfire::exceptions::UtilityError
     
    class  gridfire::exceptions::HashingError
     
    + + + + + +

    +Namespaces

    namespace  gridfire
     
    namespace  gridfire::exceptions
     
    +
    +
    + + + + diff --git a/docs/html/error__utils_8h.js b/docs/html/error__utils_8h.js new file mode 100644 index 00000000..af4a5af2 --- /dev/null +++ b/docs/html/error__utils_8h.js @@ -0,0 +1,5 @@ +var error__utils_8h = +[ + [ "gridfire::exceptions::UtilityError", "classgridfire_1_1exceptions_1_1_utility_error.html", null ], + [ "gridfire::exceptions::HashingError", "classgridfire_1_1exceptions_1_1_hashing_error.html", "classgridfire_1_1exceptions_1_1_hashing_error" ] +]; \ No newline at end of file diff --git a/docs/html/examples.html b/docs/html/examples.html index 0efe8130..a8a25424 100644 --- a/docs/html/examples.html +++ b/docs/html/examples.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/exceptions_2bindings_8cpp.html b/docs/html/exceptions_2bindings_8cpp.html index 82340a93..4ab0b7d9 100644 --- a/docs/html/exceptions_2bindings_8cpp.html +++ b/docs/html/exceptions_2bindings_8cpp.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/exceptions_2bindings_8h.html b/docs/html/exceptions_2bindings_8h.html index ce0e2800..97b562e4 100644 --- a/docs/html/exceptions_2bindings_8h.html +++ b/docs/html/exceptions_2bindings_8h.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/exceptions_8h.html b/docs/html/exceptions_8h.html index d19ea8e6..dc56b148 100644 --- a/docs/html/exceptions_8h.html +++ b/docs/html/exceptions_8h.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -103,6 +103,7 @@ $(function(){initNavTree('exceptions_8h.html',''); initResizable(true); });
    #include "gridfire/exceptions/error_engine.h"
    +#include "gridfire/exceptions/error_utils.h"
    diff --git a/docs/html/expectations_2bindings_8cpp.html b/docs/html/expectations_2bindings_8cpp.html index 5491af09..ad680575 100644 --- a/docs/html/expectations_2bindings_8cpp.html +++ b/docs/html/expectations_2bindings_8cpp.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/expectations_2bindings_8h.html b/docs/html/expectations_2bindings_8h.html index 2f567207..f5438591 100644 --- a/docs/html/expectations_2bindings_8h.html +++ b/docs/html/expectations_2bindings_8h.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/expectations_8h.html b/docs/html/expectations_8h.html index c65186db..2f324744 100644 --- a/docs/html/expectations_8h.html +++ b/docs/html/expectations_8h.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/expected__engine_8h.html b/docs/html/expected__engine_8h.html index 68eebd33..2cb4b88b 100644 --- a/docs/html/expected__engine_8h.html +++ b/docs/html/expected__engine_8h.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/files.html b/docs/html/files.html index eccadf2c..7b2763f9 100644 --- a/docs/html/files.html +++ b/docs/html/files.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -133,7 +133,8 @@ $(function(){initNavTree('files.html',''); initResizable(true); });  engine_graph.h  ► exceptions  error_engine.h - exceptions.h + error_utils.h + exceptions.h  ► expectations  expectations.h  expected_engine.h @@ -182,8 +183,10 @@ $(function(){initNavTree('files.html',''); initResizable(true); });  trigger_logical.hCombinators for composing triggers with boolean logic (AND/OR/NOT/EveryNth)  trigger_result.hStructured explanation node for trigger evaluations  ► utils - logging.h - table_format.h + general_composition.h + hashing.h + logging.h + table_format.h  network.h  ▼ lib  ▼ engine diff --git a/docs/html/functions.html b/docs/html/functions.html index 1165d263..919cd3fd 100644 --- a/docs/html/functions.html +++ b/docs/html/functions.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -111,9 +111,12 @@ $(function(){initNavTree('functions.html',''); initResizable(true); });
  • a4 : gridfire::reaction::RateCoefficientSet
  • a5 : gridfire::reaction::RateCoefficientSet
  • a6 : gridfire::reaction::RateCoefficientSet
    • +
  • abs_failure() : gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger
  • AdaptiveEngineView() : gridfire::AdaptiveEngineView
  • add_reaction() : gridfire::reaction::LogicalReaclibReaction, gridfire::reaction::ReactionSet, gridfire::ReactionSet
  • ADDouble : gridfire::screening::BareScreeningModel, gridfire::screening::ScreeningModel
    • +
  • addSpeciesToAlgebraic() : gridfire::MultiscalePartitioningEngineView::QSEGroup
    • +
  • addSpeciesToSeed() : gridfire::MultiscalePartitioningEngineView::QSEGroup
  • affected_species_indices : gridfire::GraphEngine::PrecomputedReaction
  • aIon : gridfire::approx8::Approx8Net
  • algebraic_species : gridfire::MultiscalePartitioningEngineView::QSEGroup
    • diff --git a/docs/html/functions_b.html b/docs/html/functions_b.html index 693e124b..90bea59f 100644 --- a/docs/html/functions_b.html +++ b/docs/html/functions_b.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -103,6 +103,7 @@ $(function(){initNavTree('functions_b.html',''); initResizable(true); });

    - b -

    @@ -224,6 +237,7 @@ $(function(){initNavTree('namespacemembers.html',''); initResizable(true); });
  • ScreeningType : gridfire::screening
  • selectScreeningModel() : gridfire::screening
  • SparsityPattern : gridfire
    • +
  • splitmix64() : gridfire::utils::hashing::reaction
  • StaleEngineErrorTypes : gridfire::expectations
  • stringToBasePartitionType : gridfire::partition
  • sum_product() : gridfire::approx8
    • @@ -232,6 +246,7 @@ $(function(){initNavTree('namespacemembers.html',''); initResizable(true); });

    - t -

    diff --git a/docs/html/namespacemembers_enum.html b/docs/html/namespacemembers_enum.html index dfe99e3e..9e0dc187 100644 --- a/docs/html/namespacemembers_enum.html +++ b/docs/html/namespacemembers_enum.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -104,6 +104,7 @@ $(function(){initNavTree('namespacemembers_enum.html',''); initResizable(true);
  • EngineErrorTypes : gridfire::expectations
  • InterpolationErrorType : gridfire::rates::weak
  • NetworkBuildDepth : gridfire
    • +
  • NetworkConstructionFlags : gridfire
  • NetworkFormat : gridfire
  • NeutrinoTypes : gridfire::rates::weak
  • PrimingReportStatus : gridfire
    • diff --git a/docs/html/namespacemembers_eval.html b/docs/html/namespacemembers_eval.html index 965eed3c..ffbaad6d 100644 --- a/docs/html/namespacemembers_eval.html +++ b/docs/html/namespacemembers_eval.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/namespacemembers_func.html b/docs/html/namespacemembers_func.html index e9957a5f..63a474d4 100644 --- a/docs/html/namespacemembers_func.html +++ b/docs/html/namespacemembers_func.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -102,8 +102,7 @@ $(function(){initNavTree('namespacemembers_func.html',''); initResizable(true);
    Here is a list of all namespace functions with links to the namespace documentation for each function:

    - b -

      -
    • build_nuclear_network() : gridfire
      • -
    • build_reaclib_nuclear_network() : gridfire
      • +
    • build_nuclear_network() : gridfire
    @@ -112,8 +111,8 @@ $(function(){initNavTree('namespacemembers_func.html',''); initResizable(true);
  • c12c12_rate() : gridfire::approx8
  • c12o16_rate() : gridfire::approx8
  • c12p_rate() : gridfire::approx8
    • -
  • calculateCreationRate() : gridfire
    • -
  • calculateDestructionRateConstant() : gridfire
    • +
  • calculateCreationRate() : gridfire
    • +
  • calculateDestructionRateConstant() : gridfire
    • @@ -123,7 +122,7 @@ $(function(){initNavTree('namespacemembers_func.html',''); initResizable(true);

    - f -

    @@ -136,6 +135,9 @@ $(function(){initNavTree('namespacemembers_func.html',''); initResizable(true);

    - h -

    @@ -150,6 +152,11 @@ $(function(){initNavTree('namespacemembers_func.html',''); initResizable(true);

    - m -

    @@ -160,13 +167,16 @@ $(function(){initNavTree('namespacemembers_func.html',''); initResizable(true);
  • n15pg_frac() : gridfire::approx8
  • n15pg_rate() : gridfire::approx8
  • ne20a_rate() : gridfire::approx8
    • +
  • NetworkConstructionFlagsToString() : gridfire

    • - o -

    @@ -174,7 +184,7 @@ $(function(){initNavTree('namespacemembers_func.html',''); initResizable(true);
  • packReactionSet() : gridfire::reaction
  • parseSpeciesString() : gridfire::reaclib
  • pp_rate() : gridfire::approx8
    • -
  • primeNetwork() : gridfire
    • +
  • primeNetwork() : gridfire
  • printWhy() : gridfire::trigger
    • @@ -187,11 +197,13 @@ $(function(){initNavTree('namespacemembers_func.html',''); initResizable(true);

    - s -

    - t -

    diff --git a/docs/html/namespacemembers_type.html b/docs/html/namespacemembers_type.html index 565c737a..29a98699 100644 --- a/docs/html/namespacemembers_type.html +++ b/docs/html/namespacemembers_type.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/namespacemembers_vars.html b/docs/html/namespacemembers_vars.html index 98d36d09..f2b24da0 100644 --- a/docs/html/namespacemembers_vars.html +++ b/docs/html/namespacemembers_vars.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -107,6 +107,8 @@ $(function(){initNavTree('namespacemembers_vars.html',''); initResizable(true);
  • MIN_DENSITY_THRESHOLD : gridfire
  • MIN_JACOBIAN_THRESHOLD : gridfire
  • PrimingReportStatusStrings : gridfire
    • +
  • ReactionPhysicalTypeNames : gridfire::reaction
    • +
  • ReactionTypeNames : gridfire::reaction
  • RT_TEMPERATURE_GRID_T9 : gridfire::partition
  • s_all_reaclib_reactions_ptr : gridfire::reaclib
  • s_initialized : gridfire::reaclib
    • diff --git a/docs/html/namespaces.html b/docs/html/namespaces.html index cfe01710..a4c01595 100644 --- a/docs/html/namespaces.html +++ b/docs/html/namespaces.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -121,7 +121,9 @@ $(function(){initNavTree('namespaces.html',''); initResizable(true); });  ▼Ntrigger  ▼Nsolver  NCVODE - Nutils + ▼Nutils + ▼Nhashing + Nreaction  NstdSTL namespace
    diff --git a/docs/html/namespacestd.html b/docs/html/namespacestd.html index 63f8c1a9..8c190d60 100644 --- a/docs/html/namespacestd.html +++ b/docs/html/namespacestd.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -205,6 +205,8 @@ Classes   struct  hash< gridfire::QSECacheKey >   +struct  hash< gridfire::rates::weak::TableAxes > +  struct  hash< gridfire::reaction::Reaction >   struct  hash< gridfire::reaction::ReactionSet > diff --git a/docs/html/namespacestd.js b/docs/html/namespacestd.js index 6f9dd718..f505b8fb 100644 --- a/docs/html/namespacestd.js +++ b/docs/html/namespacestd.js @@ -1,6 +1,7 @@ var namespacestd = [ [ "hash< gridfire::QSECacheKey >", "structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html", "structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4" ], + [ "hash< gridfire::rates::weak::TableAxes >", "structstd_1_1hash_3_01gridfire_1_1rates_1_1weak_1_1_table_axes_01_4.html", "structstd_1_1hash_3_01gridfire_1_1rates_1_1weak_1_1_table_axes_01_4" ], [ "hash< gridfire::reaction::Reaction >", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4" ], [ "hash< gridfire::reaction::ReactionSet >", 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+"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a03d2b9a7ab8b282118ff9e9e2e8c2894":[6,0,0,21,0,0,2], +"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a03d2b9a7ab8b282118ff9e9e2e8c2894":[8,0,0,20,0,0,2], +"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a6311ae17c1ee52b36e68aaf4ad066387":[6,0,0,21,0,0,5], +"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a6311ae17c1ee52b36e68aaf4ad066387":[8,0,0,20,0,0,5], +"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a8fa91234134aca6058a27b9a926fdb8a":[6,0,0,21,0,0,3], +"structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html#ac558e59f790508a5e8522c412be5b505a8fa91234134aca6058a27b9a926fdb8a":[8,0,0,20,0,0,3] }; diff --git a/docs/html/network_8cpp.html b/docs/html/network_8cpp.html index 690c4929..ba3407b9 100644 --- a/docs/html/network_8cpp.html +++ b/docs/html/network_8cpp.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/network_8h.html b/docs/html/network_8h.html index fc512c24..dec5cceb 100644 --- a/docs/html/network_8h.html +++ b/docs/html/network_8h.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/network__file_8cpp.html b/docs/html/network__file_8cpp.html index f7334ceb..ccf20711 100644 --- a/docs/html/network__file_8cpp.html +++ b/docs/html/network__file_8cpp.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/network__file_8h.html b/docs/html/network__file_8h.html index 4b8e60f0..2aeee873 100644 --- a/docs/html/network__file_8h.html +++ b/docs/html/network__file_8h.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/pages.html b/docs/html/pages.html index 2ae929a1..4696b00d 100644 --- a/docs/html/pages.html +++ b/docs/html/pages.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -105,6 +105,7 @@ $(function(){initNavTree('pages.html',''); initResizable(true); });
    Here is a list of all related documentation pages:
    +
     GridFire Python Usage Guide
     Deprecated List
    diff --git a/docs/html/partition_2bindings_8cpp.html b/docs/html/partition_2bindings_8cpp.html index 78daf90d..a709bfc9 100644 --- a/docs/html/partition_2bindings_8cpp.html +++ b/docs/html/partition_2bindings_8cpp.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/partition_2bindings_8h.html b/docs/html/partition_2bindings_8h.html index e5657e5d..fe57fe8f 100644 --- a/docs/html/partition_2bindings_8h.html +++ b/docs/html/partition_2bindings_8h.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/partition_8h.html b/docs/html/partition_8h.html index c83dc652..a8840498 100644 --- a/docs/html/partition_8h.html +++ b/docs/html/partition_8h.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/partition__abstract_8h.html b/docs/html/partition__abstract_8h.html index 05083fa8..aa4b0efe 100644 --- a/docs/html/partition__abstract_8h.html +++ b/docs/html/partition__abstract_8h.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/partition__composite_8cpp.html b/docs/html/partition__composite_8cpp.html index d2898704..e5a0ab20 100644 --- a/docs/html/partition__composite_8cpp.html +++ b/docs/html/partition__composite_8cpp.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -109,6 +109,7 @@ $(function(){initNavTree('partition__composite_8cpp.html',''); initResizable(tru #include <set>
    #include "gridfire/partition/partition_ground.h"
    #include "gridfire/partition/partition_rauscher_thielemann.h"
    +#include "gridfire/utils/hashing.h"
    #include "quill/LogMacros.h"
    @@ -109,7 +109,6 @@ $(function(){initNavTree('partition__composite_8h.html',''); initResizable(true) #include "gridfire/partition/partition_types.h"
    #include "fourdst/logging/logging.h"
    #include <string>
    -#include <unordered_map>
    #include <vector>
    #include <memory>

    diff --git a/docs/html/partition__composite_8h.html b/docs/html/partition__composite_8h.html index 51aec503..e5feb6d6 100644 --- a/docs/html/partition__composite_8h.html +++ b/docs/html/partition__composite_8h.html @@ -29,7 +29,7 @@

    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/partition__ground_8cpp.html b/docs/html/partition__ground_8cpp.html index 86d5051c..cb93a035 100644 --- a/docs/html/partition__ground_8cpp.html +++ b/docs/html/partition__ground_8cpp.html @@ -29,7 +29,7 @@ diff --git a/docs/html/partition__ground_8h.html b/docs/html/partition__ground_8h.html index 04fce562..59ea6a47 100644 --- a/docs/html/partition__ground_8h.html +++ b/docs/html/partition__ground_8h.html @@ -29,7 +29,7 @@ diff --git a/docs/html/partition__rauscher__thielemann_8cpp.html b/docs/html/partition__rauscher__thielemann_8cpp.html index 075fd6b9..38d7de36 100644 --- a/docs/html/partition__rauscher__thielemann_8cpp.html +++ b/docs/html/partition__rauscher__thielemann_8cpp.html @@ -29,7 +29,7 @@ diff --git a/docs/html/partition__rauscher__thielemann_8h.html b/docs/html/partition__rauscher__thielemann_8h.html index ab668f05..2963053d 100644 --- a/docs/html/partition__rauscher__thielemann_8h.html +++ b/docs/html/partition__rauscher__thielemann_8h.html @@ -29,7 +29,7 @@ diff --git a/docs/html/partition__types_8h.html b/docs/html/partition__types_8h.html index c8d1cfbf..99e6946f 100644 --- a/docs/html/partition__types_8h.html +++ b/docs/html/partition__types_8h.html @@ -29,7 +29,7 @@ diff --git a/docs/html/priming_8cpp.html b/docs/html/priming_8cpp.html index 9ee843ee..bb4e4e4e 100644 --- a/docs/html/priming_8cpp.html +++ b/docs/html/priming_8cpp.html @@ -29,7 +29,7 @@ @@ -122,15 +122,15 @@ Namespaces
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    - - - - - - - - - + + + + + + + + +

    Functions

    const reaction::Reaction * gridfire::findDominantCreationChannel (const DynamicEngine &engine, const Species &species, const fourdst::composition::Composition &comp, const double T9, const double rho)
     
    PrimingReport gridfire::primeNetwork (const NetIn &netIn, DynamicEngine &engine)
     Primes absent species in the network to their equilibrium abundances.
     
    double gridfire::calculateDestructionRateConstant (const DynamicEngine &engine, const Species &species, const Composition &comp, const double T9, const double rho)
     
    double gridfire::calculateCreationRate (const DynamicEngine &engine, const Species &species, const Composition &comp, const double T9, const double rho)
     
    const reaction::Reaction * gridfire::findDominantCreationChannel (const DynamicEngine &engine, const Species &species, const Composition &comp, const double T9, const double rho, const std::optional< std::vector< reaction::ReactionType > > &reactionsTypesToIgnore)
     
    PrimingReport gridfire::primeNetwork (const NetIn &netIn, GraphEngine &engine, const std::optional< std::vector< reaction::ReactionType > > &ignoredReactionTypes)
     Primes absent species in the network to their equilibrium abundances.
     
    double gridfire::calculateDestructionRateConstant (const DynamicEngine &engine, const Species &species, const Composition &composition, const double T9, const double rho, const std::optional< std::vector< reaction::ReactionType > > &reactionTypesToIgnore)
     
    double gridfire::calculateCreationRate (const DynamicEngine &engine, const Species &species, const Composition &composition, const double T9, const double rho, const std::optional< std::vector< reaction::ReactionType > > &reactionTypesToIgnore)
     
    diff --git a/docs/html/priming_8cpp.js b/docs/html/priming_8cpp.js index 6f4c16ad..81cb6a5a 100644 --- a/docs/html/priming_8cpp.js +++ b/docs/html/priming_8cpp.js @@ -1,7 +1,7 @@ var priming_8cpp = [ - [ "gridfire::calculateCreationRate", "namespacegridfire.html#a553717597efebcea94232a4a1d80e31d", null ], - [ "gridfire::calculateDestructionRateConstant", "namespacegridfire.html#a023dc09e48b62e3f93f9a8b70cb2c63f", null ], - [ "gridfire::findDominantCreationChannel", "namespacegridfire.html#a2fe2e0bd4b2d4b9e0c70cc4eb9d7c48f", null ], - [ "gridfire::primeNetwork", "namespacegridfire.html#a3cd451f4b7a7bc7c2d7007ebb343e9ac", null ] + [ "gridfire::calculateCreationRate", "namespacegridfire.html#a41733bdcb8f8027e48855f9b493401a6", null ], + [ "gridfire::calculateDestructionRateConstant", "namespacegridfire.html#ac73e0b3ba4d1a411197979672e6e70ef", null ], + [ "gridfire::findDominantCreationChannel", "namespacegridfire.html#a831f081d9eb1db7129677c50c5590d57", null ], + [ "gridfire::primeNetwork", "namespacegridfire.html#a66905e14e8bb9a353889d9d014c61d12", null ] ]; \ No newline at end of file diff --git a/docs/html/priming_8h.html b/docs/html/priming_8h.html index 42647bf7..89e86469 100644 --- a/docs/html/priming_8h.html +++ b/docs/html/priming_8h.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -106,6 +106,7 @@ $(function(){initNavTree('priming_8h.html',''); initResizable(true); });
    #include "gridfire/engine/engine_abstract.h"
    +#include "gridfire/engine/engine_graph.h"
    #include "gridfire/network.h"
    #include "fourdst/composition/atomicSpecies.h"
    @@ -116,15 +117,15 @@ Namespaces
    - - - - - - - - - + + + + + + + + +

    Functions

    PrimingReport gridfire::primeNetwork (const NetIn &netIn, DynamicEngine &engine)
     Primes absent species in the network to their equilibrium abundances.
     
    double gridfire::calculateDestructionRateConstant (const DynamicEngine &engine, const fourdst::atomic::Species &species, const fourdst::composition::Composition &composition, double T9, double rho)
     Computes the destruction rate constant for a specific species.
     
    double gridfire::calculateCreationRate (const DynamicEngine &engine, const fourdst::atomic::Species &species, const fourdst::composition::Composition &composition, double T9, double rho)
     Computes the creation rate for a specific species.
     
    PrimingReport gridfire::primeNetwork (const NetIn &netIn, GraphEngine &engine, const std::optional< std::vector< reaction::ReactionType > > &ignoredReactionTypes)
     Primes absent species in the network to their equilibrium abundances.
     
    double gridfire::calculateDestructionRateConstant (const DynamicEngine &engine, const fourdst::atomic::Species &species, const fourdst::composition::Composition &composition, double T9, double rho, const std::optional< std::vector< reaction::ReactionType > > &reactionTypesToIgnore)
     Computes the destruction rate constant for a specific species.
     
    double gridfire::calculateCreationRate (const DynamicEngine &engine, const fourdst::atomic::Species &species, const fourdst::composition::Composition &composition, double T9, double rho, const std::optional< std::vector< reaction::ReactionType > > &reactionTypesToIgnore)
     Computes the creation rate for a specific species.
     
    diff --git a/docs/html/priming_8h.js b/docs/html/priming_8h.js index b597ded0..90bba963 100644 --- a/docs/html/priming_8h.js +++ b/docs/html/priming_8h.js @@ -1,6 +1,6 @@ var priming_8h = [ - [ "gridfire::calculateCreationRate", "namespacegridfire.html#a8995b949592d59850e45a3fd27306369", null ], - [ "gridfire::calculateDestructionRateConstant", "namespacegridfire.html#ab6e14208fad69f4031411a9346c12397", null ], - [ "gridfire::primeNetwork", "namespacegridfire.html#a3cd451f4b7a7bc7c2d7007ebb343e9ac", null ] + [ "gridfire::calculateCreationRate", "namespacegridfire.html#afe8beb35efa1d8708187c8eb2d4a37b3", null ], + [ "gridfire::calculateDestructionRateConstant", "namespacegridfire.html#a4a5cebf9768d6401c1f0e7f50e9f4d5d", null ], + [ "gridfire::primeNetwork", "namespacegridfire.html#a66905e14e8bb9a353889d9d014c61d12", null ] ]; \ No newline at end of file diff --git a/docs/html/py__engine_8cpp.html b/docs/html/py__engine_8cpp.html index 2e10f9d7..9b9de42a 100644 --- a/docs/html/py__engine_8cpp.html +++ b/docs/html/py__engine_8cpp.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/py__engine_8h.html b/docs/html/py__engine_8h.html index 825a09ae..94addef7 100644 --- a/docs/html/py__engine_8h.html +++ b/docs/html/py__engine_8h.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/py__io_8cpp.html b/docs/html/py__io_8cpp.html index c80d40ea..02be71df 100644 --- a/docs/html/py__io_8cpp.html +++ b/docs/html/py__io_8cpp.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/py__io_8h.html b/docs/html/py__io_8h.html index 535a257c..a33f84b5 100644 --- a/docs/html/py__io_8h.html +++ b/docs/html/py__io_8h.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
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    @@ -114,6 +114,8 @@ $(function(){initNavTree('py__solver_8h.html',''); initResizable(true); }); Classes class  PyDynamicNetworkSolverStrategy   +class  PySolverContextBase + 
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    @@ -109,6 +109,7 @@ $(function(){initNavTree('reaction_8cpp.html',''); initResizable(true); });
    #include "gridfire/reaction/reaction.h"
    #include <string_view>
    #include <string>
    +#include <utility>
    #include <vector>
    #include <unordered_set>
    #include <algorithm>
    diff --git a/docs/html/reaction_8h.html b/docs/html/reaction_8h.html index dd9dac3c..011cc478 100644 --- a/docs/html/reaction_8h.html +++ b/docs/html/reaction_8h.html @@ -29,7 +29,7 @@ -
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    @@ -103,14 +103,17 @@ $(function(){initNavTree('reaction_8h.html',''); initResizable(true); }); Classes | Namespaces | Enumerations | -Functions
    +Functions | +Variables
    reaction.h File Reference

    Defines classes for representing and managing nuclear reactions. More...

    -
    #include <string_view>
    +
    #include <expected>
    +#include <ranges>
    +#include <string_view>
    #include "fourdst/composition/atomicSpecies.h"
    #include "fourdst/logging/logging.h"
    #include "quill/Logger.h"
    @@ -155,6 +158,13 @@ Enumerations Functions ReactionSet gridfire::reaction::packReactionSet (const ReactionSet &reactionSet)   + + + + + +

    +Variables

    static std::unordered_map< ReactionType, std::string > gridfire::reaction::ReactionTypeNames
     
    static std::unordered_map< ReactionType, std::string > gridfire::reaction::ReactionPhysicalTypeNames
     

    Detailed Description

    Defines classes for representing and managing nuclear reactions.

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    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -105,12 +105,14 @@ $(function(){initNavTree('solver_2bindings_8cpp.html',''); initResizable(true);
    #include <pybind11/pybind11.h>
    +#include <pybind11/functional.h>
    #include <pybind11/stl.h>
    #include <pybind11/stl_bind.h>
    #include <pybind11/numpy.h>
    +#include <functional>
    #include <boost/numeric/ublas/vector.hpp>
    #include "bindings.h"
    -#include "gridfire/solver/solver.h"
    +#include "gridfire/solver/strategies/CVODE_solver_strategy.h"
    #include "trampoline/py_solver.h"
    diff --git a/docs/html/solver_8h.html b/docs/html/solver_8h.html index 30a4c8ef..d7857345 100644 --- a/docs/html/solver_8h.html +++ b/docs/html/solver_8h.html @@ -29,7 +29,7 @@ @@ -116,8 +116,8 @@ $(function(){initNavTree('solver_8h.html',''); initResizable(true); });

    diff --git a/docs/html/solver_2bindings_8h.html b/docs/html/solver_2bindings_8h.html index b6d03326..e781dec4 100644 --- a/docs/html/solver_2bindings_8h.html +++ b/docs/html/solver_2bindings_8h.html @@ -29,7 +29,7 @@

    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    - - + + diff --git a/docs/html/solver_8h.js b/docs/html/solver_8h.js index cf9a1be2..b9e1001c 100644 --- a/docs/html/solver_8h.js +++ b/docs/html/solver_8h.js @@ -1,6 +1,6 @@ var solver_8h = [ - [ "gridfire::solver::SolverContextBase", "structgridfire_1_1solver_1_1_solver_context_base.html", "structgridfire_1_1solver_1_1_solver_context_base" ], + [ "gridfire::solver::SolverContextBase", "classgridfire_1_1solver_1_1_solver_context_base.html", "classgridfire_1_1solver_1_1_solver_context_base" ], [ "gridfire::solver::NetworkSolverStrategy< EngineT >", "classgridfire_1_1solver_1_1_network_solver_strategy.html", "classgridfire_1_1solver_1_1_network_solver_strategy" ], [ "gridfire::solver::DynamicNetworkSolverStrategy", "namespacegridfire_1_1solver.html#a8118d08bc25e439754b43a3f5ecc1db3", null ] ]; \ No newline at end of file diff --git a/docs/html/solver__interfaces_8h.html b/docs/html/solver__interfaces_8h.html index 46e34746..977ad40f 100644 --- a/docs/html/solver__interfaces_8h.html +++ b/docs/html/solver__interfaces_8h.html @@ -29,7 +29,7 @@ diff --git a/docs/html/structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow-members.html b/docs/html/structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow-members.html index e167b916..0c5a42b4 100644 --- a/docs/html/structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow-members.html +++ b/docs/html/structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow-members.html @@ -29,7 +29,7 @@ diff --git a/docs/html/structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html b/docs/html/structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html index cee47f94..71a2dc76 100644 --- a/docs/html/structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html +++ b/docs/html/structgridfire_1_1_adaptive_engine_view_1_1_reaction_flow.html @@ -29,7 +29,7 @@ diff --git a/docs/html/structgridfire_1_1_energy_derivatives-members.html b/docs/html/structgridfire_1_1_energy_derivatives-members.html index bd5b7daa..6a604239 100644 --- a/docs/html/structgridfire_1_1_energy_derivatives-members.html +++ b/docs/html/structgridfire_1_1_energy_derivatives-members.html @@ -29,7 +29,7 @@ diff --git a/docs/html/structgridfire_1_1_energy_derivatives.html b/docs/html/structgridfire_1_1_energy_derivatives.html index ef6d0adc..2e42d492 100644 --- a/docs/html/structgridfire_1_1_energy_derivatives.html +++ b/docs/html/structgridfire_1_1_energy_derivatives.html @@ -29,7 +29,7 @@ diff --git a/docs/html/structgridfire_1_1_graph_engine_1_1_precomputed_reaction-members.html b/docs/html/structgridfire_1_1_graph_engine_1_1_precomputed_reaction-members.html index db900e97..40c3d1c6 100644 --- a/docs/html/structgridfire_1_1_graph_engine_1_1_precomputed_reaction-members.html +++ b/docs/html/structgridfire_1_1_graph_engine_1_1_precomputed_reaction-members.html @@ -29,7 +29,7 @@ @@ -108,7 +108,9 @@ $(function(){initNavTree('structgridfire_1_1_graph_engine_1_1_precomputed_reacti - + + + diff --git a/docs/html/structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html b/docs/html/structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html index 16885bc2..2260e81c 100644 --- a/docs/html/structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html +++ b/docs/html/structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html @@ -29,7 +29,7 @@ @@ -110,6 +110,10 @@ $(function(){initNavTree('structgridfire_1_1_graph_engine_1_1_precomputed_reacti Public Attributes + + + + @@ -173,6 +177,20 @@ Public Attributes

    Classes

    struct  gridfire::solver::SolverContextBase
     Base class for solver callback contexts. More...
    struct  gridfire::solver::SolverContextBase
     Base class for solver callback contexts. More...
     
    class  gridfire::solver::NetworkSolverStrategy< EngineT >
     Abstract base class for network solver strategies. More...
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    affected_species_indicesgridfire::GraphEngine::PrecomputedReaction
    product_powersgridfire::GraphEngine::PrecomputedReaction
    reactant_powersgridfire::GraphEngine::PrecomputedReaction
    reaction_indexgridfire::GraphEngine::PrecomputedReaction
    reaction_hashgridfire::GraphEngine::PrecomputedReaction
    reaction_indexgridfire::GraphEngine::PrecomputedReaction
    reaction_typegridfire::GraphEngine::PrecomputedReaction
    reverse_symmetry_factorgridfire::GraphEngine::PrecomputedReaction
    stoichiometric_coefficientsgridfire::GraphEngine::PrecomputedReaction
    symmetry_factorgridfire::GraphEngine::PrecomputedReaction
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    size_t reaction_index
     
    reaction::ReactionType reaction_type
     
    uint64_t reaction_hash
     
    std::vector< size_t > unique_reactant_indices
     
    std::vector< int > reactant_powers
    +
    +
    + +

    ◆ reaction_hash

    + +
    +
    + + + + +
    uint64_t gridfire::GraphEngine::PrecomputedReaction::reaction_hash
    +
    +
    @@ -187,6 +205,20 @@ Public Attributes
    +
    +
    + +

    ◆ reaction_type

    + +
    +
    + + + + +
    reaction::ReactionType gridfire::GraphEngine::PrecomputedReaction::reaction_type
    +
    +
    diff --git a/docs/html/structgridfire_1_1_graph_engine_1_1_precomputed_reaction.js b/docs/html/structgridfire_1_1_graph_engine_1_1_precomputed_reaction.js index 09aa470c..295a4580 100644 --- a/docs/html/structgridfire_1_1_graph_engine_1_1_precomputed_reaction.js +++ b/docs/html/structgridfire_1_1_graph_engine_1_1_precomputed_reaction.js @@ -3,7 +3,9 @@ var structgridfire_1_1_graph_engine_1_1_precomputed_reaction = [ "affected_species_indices", "structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a3e2e67e532970738d20491ea56b170f3", null ], [ "product_powers", "structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a3ce63aa3ad88568f4eb0d3ca2414209f", null ], [ "reactant_powers", "structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a03d596c88289e21e7bd18711e3a1f275", null ], + [ "reaction_hash", "structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a6e1e24901c70ee44b0529e1391355752", null ], [ "reaction_index", "structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a93635f6940d3534e949f402503c3d497", null ], + [ "reaction_type", "structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#ad96b3f981fb2fbad63323b158d98b2ac", null ], [ "reverse_symmetry_factor", "structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a6bcfe2230dd54b088180d34389266b07", null ], [ "stoichiometric_coefficients", "structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a7a7e9167b19e339e0d69544b9c00e79c", null ], [ "symmetry_factor", "structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#ac42504e868c0b9fd9ac9a405ea739f0e", null ], diff --git a/docs/html/structgridfire_1_1_graph_engine_1_1constants-members.html b/docs/html/structgridfire_1_1_graph_engine_1_1constants-members.html index 1a9c1576..ecca8465 100644 --- a/docs/html/structgridfire_1_1_graph_engine_1_1constants-members.html +++ b/docs/html/structgridfire_1_1_graph_engine_1_1constants-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1_graph_engine_1_1constants.html b/docs/html/structgridfire_1_1_graph_engine_1_1constants.html index 087ac6f3..9061b759 100644 --- a/docs/html/structgridfire_1_1_graph_engine_1_1constants.html +++ b/docs/html/structgridfire_1_1_graph_engine_1_1constants.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats-members.html b/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats-members.html index d5700e0e..17b0081e 100644 --- a/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats-members.html +++ b/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html b/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html index 63ce8610..17c456e8 100644 --- a/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html +++ b/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_cache_stats.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -377,12 +377,12 @@ Public Attributes
    {operators::GetSpeciesDestructionTimescales, 0},
    {operators::Other, 0}
    }
    -
    gridfire::MultiscalePartitioningEngineView::CacheStats::operators::CalculateMolarReactionFlow
    @ CalculateMolarReactionFlow
    Definition engine_multiscale.h:892
    - - - -
    gridfire::MultiscalePartitioningEngineView::CacheStats::operators::GetSpeciesDestructionTimescales
    @ GetSpeciesDestructionTimescales
    Definition engine_multiscale.h:894
    - +
    gridfire::MultiscalePartitioningEngineView::CacheStats::operators::CalculateMolarReactionFlow
    @ CalculateMolarReactionFlow
    Definition engine_multiscale.h:975
    + + + +
    gridfire::MultiscalePartitioningEngineView::CacheStats::operators::GetSpeciesDestructionTimescales
    @ GetSpeciesDestructionTimescales
    Definition engine_multiscale.h:977
    +

    Map from operators to the number of cache hits for that operator.

    diff --git a/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor-members.html b/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor-members.html index c51f568b..9bf6a894 100644 --- a/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor-members.html +++ b/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html b/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html index 1183a7c2..19ca3444 100644 --- a/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html +++ b/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_eigen_functor.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -148,7 +148,7 @@ Public Attributes  Pointer to the MultiscalePartitioningEngineView instance.
      const std::set< fourdst::atomic::Species > & m_qse_solve_species - Indices of the species to solve for in the QSE group.
    + The set of species to solve for in the QSE group.
      const fourdst::composition::Composition & m_initial_comp  Initial abundances of all species in the full network.
    @@ -453,7 +453,7 @@ Public Attributes
    -

    Indices of the species to solve for in the QSE group.

    +

    The set of species to solve for in the QSE group.

    diff --git a/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group-members.html b/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group-members.html index c69c55e5..1cbba806 100644 --- a/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group-members.html +++ b/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -105,6 +105,8 @@ $(function(){initNavTree('structgridfire_1_1_multiscale_partitioning_engine_view

    This is the complete list of members for gridfire::MultiscalePartitioningEngineView::QSEGroup, including all inherited members.

    + + @@ -112,8 +114,9 @@ $(function(){initNavTree('structgridfire_1_1_multiscale_partitioning_engine_view - - + + +
    addSpeciesToAlgebraic(const fourdst::atomic::Species &species)gridfire::MultiscalePartitioningEngineView::QSEGroup
    addSpeciesToSeed(const fourdst::atomic::Species &species)gridfire::MultiscalePartitioningEngineView::QSEGroup
    algebraic_speciesgridfire::MultiscalePartitioningEngineView::QSEGroup
    is_in_equilibriumgridfire::MultiscalePartitioningEngineView::QSEGroup
    mean_timescalegridfire::MultiscalePartitioningEngineView::QSEGroup
    operator<(const QSEGroup &other) constgridfire::MultiscalePartitioningEngineView::QSEGroup
    operator==(const QSEGroup &other) constgridfire::MultiscalePartitioningEngineView::QSEGroup
    operator>(const QSEGroup &other) constgridfire::MultiscalePartitioningEngineView::QSEGroup
    seed_speciesgridfire::MultiscalePartitioningEngineView::QSEGroup
    toString() constgridfire::MultiscalePartitioningEngineView::QSEGroup
    removeSpecies(const fourdst::atomic::Species &species)gridfire::MultiscalePartitioningEngineView::QSEGroup
    seed_speciesgridfire::MultiscalePartitioningEngineView::QSEGroup
    toString() constgridfire::MultiscalePartitioningEngineView::QSEGroup
    diff --git a/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html b/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html index 063c3996..052b1fed 100644 --- a/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html +++ b/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -112,6 +112,12 @@ $(function(){initNavTree('structgridfire_1_1_multiscale_partitioning_engine_view + + + + + + @@ -146,6 +152,40 @@ Public Attributes

    Struct representing a QSE group.

    Purpose
    A container to hold all information about a set of species that are potentially in quasi-steady-state equilibrium with each other.

    Member Function Documentation

    + +

    ◆ addSpeciesToAlgebraic()

    + +
    +
    +

    Public Member Functions

    void removeSpecies (const fourdst::atomic::Species &species)
     
    void addSpeciesToAlgebraic (const fourdst::atomic::Species &species)
     
    void addSpeciesToSeed (const fourdst::atomic::Species &species)
     
    bool operator< (const QSEGroup &other) const
     Less-than operator for QSEGroup, used for sorting.
     
    + + + + + + +
    void gridfire::MultiscalePartitioningEngineView::QSEGroup::addSpeciesToAlgebraic (const fourdst::atomic::Species & species)
    +
    + +
    +
    + +

    ◆ addSpeciesToSeed()

    + +
    +
    + + + + + + + +
    void gridfire::MultiscalePartitioningEngineView::QSEGroup::addSpeciesToSeed (const fourdst::atomic::Species & species)
    +
    + +
    +

    ◆ operator!=()

    @@ -248,6 +288,23 @@ Public Attributes
    Returns
    True if this group's mean timescale is greater than the other's.
    +
    +
    + +

    ◆ removeSpecies()

    + +
    +
    + + + + + + + +
    void gridfire::MultiscalePartitioningEngineView::QSEGroup::removeSpecies (const fourdst::atomic::Species & species)
    +
    +
    diff --git a/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.js b/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.js index 1ecf6449..164469b9 100644 --- a/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.js +++ b/docs/html/structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.js @@ -1,9 +1,12 @@ var structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group = [ + [ "addSpeciesToAlgebraic", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#ae44fee7c866646095a6eda15b01adb21", null ], + [ "addSpeciesToSeed", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#af3e62337397d603302305ca6412db02c", null ], [ "operator!=", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#ac81f994476d580a92686e7f84b726c2a", null ], [ "operator<", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a2d09ce96d0d7cfe8f0aeb01f22f07a06", null ], [ "operator==", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a82c2256254ca88e141672891e5228f88", null ], [ "operator>", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a77d5ebb3b85649bddab09e5ee7fac50a", null ], + [ "removeSpecies", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#aa47f2a4d1f1cdb599382d4a43f92fe7c", null ], [ "toString", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a165b68f0ebb30cda5ffaafa7c0f27617", null ], [ "algebraic_species", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#aff54b71dd17051bc991f747a328c7d8e", null ], [ "is_in_equilibrium", "structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#af8dc75a5e022510ec13da0be8c53aa06", null ], diff --git a/docs/html/structgridfire_1_1_net_in-members.html b/docs/html/structgridfire_1_1_net_in-members.html index 412d7a19..d8df8f34 100644 --- a/docs/html/structgridfire_1_1_net_in-members.html +++ b/docs/html/structgridfire_1_1_net_in-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1_net_in.html b/docs/html/structgridfire_1_1_net_in.html index 0df51612..c9650b5f 100644 --- a/docs/html/structgridfire_1_1_net_in.html +++ b/docs/html/structgridfire_1_1_net_in.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1_net_out-members.html b/docs/html/structgridfire_1_1_net_out-members.html index 3762e16f..b91a9ab6 100644 --- a/docs/html/structgridfire_1_1_net_out-members.html +++ b/docs/html/structgridfire_1_1_net_out-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1_net_out.html b/docs/html/structgridfire_1_1_net_out.html index 24153a8b..d79b624a 100644 --- a/docs/html/structgridfire_1_1_net_out.html +++ b/docs/html/structgridfire_1_1_net_out.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1_priming_report-members.html b/docs/html/structgridfire_1_1_priming_report-members.html index 04146d0d..f09fa145 100644 --- a/docs/html/structgridfire_1_1_priming_report-members.html +++ b/docs/html/structgridfire_1_1_priming_report-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1_priming_report.html b/docs/html/structgridfire_1_1_priming_report.html index 5d5f3105..7b433e52 100644 --- a/docs/html/structgridfire_1_1_priming_report.html +++ b/docs/html/structgridfire_1_1_priming_report.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1_q_s_e_cache_config-members.html b/docs/html/structgridfire_1_1_q_s_e_cache_config-members.html index faa99d3b..5d7a12c4 100644 --- a/docs/html/structgridfire_1_1_q_s_e_cache_config-members.html +++ b/docs/html/structgridfire_1_1_q_s_e_cache_config-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1_q_s_e_cache_config.html b/docs/html/structgridfire_1_1_q_s_e_cache_config.html index bf7e150e..bd58d59d 100644 --- a/docs/html/structgridfire_1_1_q_s_e_cache_config.html +++ b/docs/html/structgridfire_1_1_q_s_e_cache_config.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1_q_s_e_cache_key-members.html b/docs/html/structgridfire_1_1_q_s_e_cache_key-members.html index 326edad7..c2810849 100644 --- a/docs/html/structgridfire_1_1_q_s_e_cache_key-members.html +++ b/docs/html/structgridfire_1_1_q_s_e_cache_key-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1_q_s_e_cache_key.html b/docs/html/structgridfire_1_1_q_s_e_cache_key.html index 5b6ccb9c..4ec5b74f 100644 --- a/docs/html/structgridfire_1_1_q_s_e_cache_key.html +++ b/docs/html/structgridfire_1_1_q_s_e_cache_key.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1_step_derivatives-members.html b/docs/html/structgridfire_1_1_step_derivatives-members.html index 0e7771bc..d95d5570 100644 --- a/docs/html/structgridfire_1_1_step_derivatives-members.html +++ b/docs/html/structgridfire_1_1_step_derivatives-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1_step_derivatives.html b/docs/html/structgridfire_1_1_step_derivatives.html index 698c045f..0a07d427 100644 --- a/docs/html/structgridfire_1_1_step_derivatives.html +++ b/docs/html/structgridfire_1_1_step_derivatives.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1approx8_1_1_approx8_net-members.html b/docs/html/structgridfire_1_1approx8_1_1_approx8_net-members.html index 8c868697..420ffea9 100644 --- a/docs/html/structgridfire_1_1approx8_1_1_approx8_net-members.html +++ b/docs/html/structgridfire_1_1approx8_1_1_approx8_net-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1approx8_1_1_approx8_net.html b/docs/html/structgridfire_1_1approx8_1_1_approx8_net.html index 545ca526..6af64cb4 100644 --- a/docs/html/structgridfire_1_1approx8_1_1_approx8_net.html +++ b/docs/html/structgridfire_1_1approx8_1_1_approx8_net.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1approx8_1_1_jacobian-members.html b/docs/html/structgridfire_1_1approx8_1_1_jacobian-members.html index eba621a5..b134badc 100644 --- a/docs/html/structgridfire_1_1approx8_1_1_jacobian-members.html +++ b/docs/html/structgridfire_1_1approx8_1_1_jacobian-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1approx8_1_1_jacobian.html b/docs/html/structgridfire_1_1approx8_1_1_jacobian.html index 0c09efab..5edd45a9 100644 --- a/docs/html/structgridfire_1_1approx8_1_1_jacobian.html +++ b/docs/html/structgridfire_1_1approx8_1_1_jacobian.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1approx8_1_1_o_d_e-members.html b/docs/html/structgridfire_1_1approx8_1_1_o_d_e-members.html index 0c46a7bd..f5404f2e 100644 --- a/docs/html/structgridfire_1_1approx8_1_1_o_d_e-members.html +++ b/docs/html/structgridfire_1_1approx8_1_1_o_d_e-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1approx8_1_1_o_d_e.html b/docs/html/structgridfire_1_1approx8_1_1_o_d_e.html index 1467b63f..5cd4f7be 100644 --- a/docs/html/structgridfire_1_1approx8_1_1_o_d_e.html +++ b/docs/html/structgridfire_1_1approx8_1_1_o_d_e.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state-members.html b/docs/html/structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state-members.html index 43827468..97fdbd7b 100644 --- a/docs/html/structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state-members.html +++ b/docs/html/structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html b/docs/html/structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html index ec255f83..1df58e95 100644 --- a/docs/html/structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html +++ b/docs/html/structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1expectations_1_1_engine_error-members.html b/docs/html/structgridfire_1_1expectations_1_1_engine_error-members.html index 0e66abc2..28d95392 100644 --- a/docs/html/structgridfire_1_1expectations_1_1_engine_error-members.html +++ b/docs/html/structgridfire_1_1expectations_1_1_engine_error-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1expectations_1_1_engine_error.html b/docs/html/structgridfire_1_1expectations_1_1_engine_error.html index a7be4427..4cb37d85 100644 --- a/docs/html/structgridfire_1_1expectations_1_1_engine_error.html +++ b/docs/html/structgridfire_1_1expectations_1_1_engine_error.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1expectations_1_1_engine_index_error-members.html b/docs/html/structgridfire_1_1expectations_1_1_engine_index_error-members.html index 028a5b69..6c12fc78 100644 --- a/docs/html/structgridfire_1_1expectations_1_1_engine_index_error-members.html +++ b/docs/html/structgridfire_1_1expectations_1_1_engine_index_error-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1expectations_1_1_engine_index_error.html b/docs/html/structgridfire_1_1expectations_1_1_engine_index_error.html index 6035d718..71486267 100644 --- a/docs/html/structgridfire_1_1expectations_1_1_engine_index_error.html +++ b/docs/html/structgridfire_1_1expectations_1_1_engine_index_error.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1expectations_1_1_stale_engine_error-members.html b/docs/html/structgridfire_1_1expectations_1_1_stale_engine_error-members.html index 6176860a..77f007fb 100644 --- a/docs/html/structgridfire_1_1expectations_1_1_stale_engine_error-members.html +++ b/docs/html/structgridfire_1_1expectations_1_1_stale_engine_error-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1expectations_1_1_stale_engine_error.html b/docs/html/structgridfire_1_1expectations_1_1_stale_engine_error.html index 537b495f..20b3805b 100644 --- a/docs/html/structgridfire_1_1expectations_1_1_stale_engine_error.html +++ b/docs/html/structgridfire_1_1expectations_1_1_stale_engine_error.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -103,7 +103,7 @@ $(function(){initNavTree('structgridfire_1_1expectations_1_1_stale_engine_error. Public Member Functions | Public Attributes | List of all members
    -
    gridfire::expectations::StaleEngineError Struct Reference
    +
    gridfire::expectations::StaleEngineError Struct Referencefinal
    diff --git a/docs/html/structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope-members.html b/docs/html/structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope-members.html index b7934bd0..e9c319bd 100644 --- a/docs/html/structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope-members.html +++ b/docs/html/structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html b/docs/html/structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html index 3510d560..8210efff 100644 --- a/docs/html/structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html +++ b/docs/html/structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points-members.html b/docs/html/structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points-members.html index 2173a297..e217240a 100644 --- a/docs/html/structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points-members.html +++ b/docs/html/structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html b/docs/html/structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html index d73dd2ed..49238599 100644 --- a/docs/html/structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html +++ b/docs/html/structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data-members.html b/docs/html/structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data-members.html index 96a00a8f..cf0f5207 100644 --- a/docs/html/structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data-members.html +++ b/docs/html/structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html b/docs/html/structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html index 9b040331..12b2b2dd 100644 --- a/docs/html/structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html +++ b/docs/html/structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record-members.html b/docs/html/structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record-members.html index a7d54f61..4e402b94 100644 --- a/docs/html/structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record-members.html +++ b/docs/html/structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html b/docs/html/structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html index 60de3c98..54ef7bc9 100644 --- a/docs/html/structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html +++ b/docs/html/structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1_bounds_error_info-members.html b/docs/html/structgridfire_1_1rates_1_1weak_1_1_bounds_error_info-members.html index 6a0e6dfd..3002cea9 100644 --- a/docs/html/structgridfire_1_1rates_1_1weak_1_1_bounds_error_info-members.html +++ b/docs/html/structgridfire_1_1rates_1_1weak_1_1_bounds_error_info-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html b/docs/html/structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html index 36042dfe..f1310a13 100644 --- a/docs/html/structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html +++ b/docs/html/structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1_interpolation_error-members.html b/docs/html/structgridfire_1_1rates_1_1weak_1_1_interpolation_error-members.html index f72c67a8..84370c77 100644 --- a/docs/html/structgridfire_1_1rates_1_1weak_1_1_interpolation_error-members.html +++ b/docs/html/structgridfire_1_1rates_1_1weak_1_1_interpolation_error-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html b/docs/html/structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html index f1ab0a94..ecc2b72e 100644 --- a/docs/html/structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html +++ b/docs/html/structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1_isotope_grid-members.html b/docs/html/structgridfire_1_1rates_1_1weak_1_1_isotope_grid-members.html index 2e979679..b320839f 100644 --- a/docs/html/structgridfire_1_1rates_1_1weak_1_1_isotope_grid-members.html +++ b/docs/html/structgridfire_1_1rates_1_1weak_1_1_isotope_grid-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -106,9 +106,8 @@ $(function(){initNavTree('structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html'

    This is the complete list of members for gridfire::rates::weak::IsotopeGrid, including all inherited members.

    - - - + +
    datagridfire::rates::weak::IsotopeGrid
    mue_axisgridfire::rates::weak::IsotopeGrid
    rhoYe_axisgridfire::rates::weak::IsotopeGrid
    t9_axisgridfire::rates::weak::IsotopeGrid
    rhoYe_axisgridfire::rates::weak::IsotopeGrid
    t9_axisgridfire::rates::weak::IsotopeGrid
    diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html b/docs/html/structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html index c8ca1ab2..a4f80b5e 100644 --- a/docs/html/structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html +++ b/docs/html/structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -106,7 +106,7 @@ $(function(){initNavTree('structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html'
    -

    Regular 3D grid and payloads for a single isotope (A,Z). +

    Regular 2D grid and payloads for a single isotope (A,Z). More...

    #include <weak_types.h>

    @@ -119,16 +119,14 @@ Public Attributes std::vector< double > rhoYe_axis  Unique sorted log10(rho*Ye) grid.
      -std::vector< double > mue_axis - Unique sorted mu_e grid.
    -  std::vector< WeakRatePayload > data - Payloads at each grid node.
    + MuE axis for each (T9, log_rhoYe) pair (the table is ragged in mu_e). This is also where the payloads are stored.
     

    Detailed Description

    -

    Regular 3D grid and payloads for a single isotope (A,Z).

    -

    Axes are monotonically increasing per dimension. Data vector is laid out in row-major order with index computed as: index = ((i_t9 * rhoYe_axis.size() + j_rhoYe) * mue_axis.size()) + k_mue

    +

    Regular 2D grid and payloads for a single isotope (A,Z).

    +

    Axes are monotonically increasing per dimension. Data vector is laid out in row-major order with index computed as:

    +

    index = i_t9 * N_rhoYe + j_rhoYe

    Member Data Documentation

    ◆ data

    @@ -142,23 +140,7 @@ Public Attributes
    -

    Payloads at each grid node.

    - -
    -
    - -

    ◆ mue_axis

    - -
    -
    - - - - -
    std::vector<double> gridfire::rates::weak::IsotopeGrid::mue_axis
    -
    - -

    Unique sorted mu_e grid.

    +

    MuE axis for each (T9, log_rhoYe) pair (the table is ragged in mu_e). This is also where the payloads are stored.

    diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1_isotope_grid.js b/docs/html/structgridfire_1_1rates_1_1weak_1_1_isotope_grid.js index c348e9ff..d9161bf8 100644 --- a/docs/html/structgridfire_1_1rates_1_1weak_1_1_isotope_grid.js +++ b/docs/html/structgridfire_1_1rates_1_1weak_1_1_isotope_grid.js @@ -1,7 +1,6 @@ var structgridfire_1_1rates_1_1weak_1_1_isotope_grid = [ [ "data", "structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html#ad0df5ef84e3a78d881838a3bb014db83", null ], - [ "mue_axis", "structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html#a82cc218ce48dcb835d07422dad927a5a", null ], [ "rhoYe_axis", "structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html#a30362f5bb497ae74cf6a10fd701273a0", null ], [ "t9_axis", "structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html#a99da523669d85aa0a628d35a077d541c", null ] ]; \ No newline at end of file diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1_rate_data_row-members.html b/docs/html/structgridfire_1_1rates_1_1weak_1_1_rate_data_row-members.html index 87cf330e..83de81e7 100644 --- a/docs/html/structgridfire_1_1rates_1_1weak_1_1_rate_data_row-members.html +++ b/docs/html/structgridfire_1_1rates_1_1weak_1_1_rate_data_row-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html b/docs/html/structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html index 28e1eb1b..38b7d033 100644 --- a/docs/html/structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html +++ b/docs/html/structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives-members.html b/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives-members.html index bfc37a44..6b66ea53 100644 --- a/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives-members.html +++ b/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives-members.html @@ -29,7 +29,7 @@ -
    diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html b/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html index 384dc727..8fa38789 100644 --- a/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html +++ b/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -106,108 +106,108 @@ $(function(){initNavTree('structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivati
    -

    Partial derivatives of the log10() fields w.r.t. (T9, log10(rho*Ye), mu_e). +

    Partial derivatives of the log10() fields w.r.t. (T9, log10(rho*Ye)). More...

    #include <weak_types.h>

    - - - - - - - - - - - - + + + + + + + + + + + +

    Public Attributes

    std::array< double, 3 > d_log_beta_plus
     
    std::array< double, 3 > d_log_electron_capture
     
    std::array< double, 3 > d_log_neutrino_loss_ec
     
    std::array< double, 3 > d_log_beta_minus
     
    std::array< double, 3 > d_log_positron_capture
     
    std::array< double, 3 > d_log_antineutrino_loss_bd
     
    std::array< double, 2 > d_log_beta_plus
     
    std::array< double, 2 > d_log_electron_capture
     
    std::array< double, 2 > d_log_neutrino_loss_ec
     
    std::array< double, 2 > d_log_beta_minus
     
    std::array< double, 2 > d_log_positron_capture
     
    std::array< double, 2 > d_log_antineutrino_loss_bd
     

    Detailed Description

    -

    Partial derivatives of the log10() fields w.r.t. (T9, log10(rho*Ye), mu_e).

    -

    Array ordering is [d/dT9, d/dlogRhoYe, d/dMuE] for each corresponding field.

    +

    Partial derivatives of the log10() fields w.r.t. (T9, log10(rho*Ye)).

    +

    Array ordering is [d/dT9, d/dlogRhoYe] for each corresponding field.

    Member Data Documentation

    - -

    ◆ d_log_antineutrino_loss_bd

    + +

    ◆ d_log_antineutrino_loss_bd

    - +
    std::array<double, 3> gridfire::rates::weak::WeakRateDerivatives::d_log_antineutrino_loss_bdstd::array<double, 2> gridfire::rates::weak::WeakRateDerivatives::d_log_antineutrino_loss_bd
    - -

    ◆ d_log_beta_minus

    + +

    ◆ d_log_beta_minus

    - +
    std::array<double, 3> gridfire::rates::weak::WeakRateDerivatives::d_log_beta_minusstd::array<double, 2> gridfire::rates::weak::WeakRateDerivatives::d_log_beta_minus
    - -

    ◆ d_log_beta_plus

    + +

    ◆ d_log_beta_plus

    - +
    std::array<double, 3> gridfire::rates::weak::WeakRateDerivatives::d_log_beta_plusstd::array<double, 2> gridfire::rates::weak::WeakRateDerivatives::d_log_beta_plus
    - -

    ◆ d_log_electron_capture

    + +

    ◆ d_log_electron_capture

    - +
    std::array<double, 3> gridfire::rates::weak::WeakRateDerivatives::d_log_electron_capturestd::array<double, 2> gridfire::rates::weak::WeakRateDerivatives::d_log_electron_capture
    - -

    ◆ d_log_neutrino_loss_ec

    + +

    ◆ d_log_neutrino_loss_ec

    - +
    std::array<double, 3> gridfire::rates::weak::WeakRateDerivatives::d_log_neutrino_loss_ecstd::array<double, 2> gridfire::rates::weak::WeakRateDerivatives::d_log_neutrino_loss_ec
    - -

    ◆ d_log_positron_capture

    + +

    ◆ d_log_positron_capture

    - +
    std::array<double, 3> gridfire::rates::weak::WeakRateDerivatives::d_log_positron_capturestd::array<double, 2> gridfire::rates::weak::WeakRateDerivatives::d_log_positron_capture
    diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.js b/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.js index 712a2cee..109ab3b3 100644 --- a/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.js +++ b/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.js @@ -1,9 +1,9 @@ var structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives = [ - [ "d_log_antineutrino_loss_bd", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a87894b5fdb0323c41f8e1e179ffefd1e", null ], - [ "d_log_beta_minus", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a54ba76b67d037954af1cbd6052becc61", null ], - [ "d_log_beta_plus", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#ab79353551bc5f832c986d24384d8a53a", null ], - [ "d_log_electron_capture", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a5e15e3d4d03288bd6f5dfc7054120514", null ], - [ "d_log_neutrino_loss_ec", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a415f5ff7ee18cc241eab5fbf6a0cdc17", null ], - [ "d_log_positron_capture", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a3cf82898078fcc9aa69344b4d2cf8783", null ] + [ "d_log_antineutrino_loss_bd", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a5f6e7e1c799fbdc9822397a86454cf3f", null ], + [ "d_log_beta_minus", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a4d631203f78251f58ccfe5292c12cd56", null ], + [ "d_log_beta_plus", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#af7f41ee20e21693d5a78abdfd93161d4", null ], + [ "d_log_electron_capture", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a38a088b882131fa00bab789eeaca3dc3", null ], + [ "d_log_neutrino_loss_ec", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a8a3167159eeaffbf3052528f5067cbac", null ], + [ "d_log_positron_capture", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#a66e72144cc2398e0ff5f8b43ad9d15e8", null ] ]; \ No newline at end of file diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload-members.html b/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload-members.html index 3b82390b..867f3ce0 100644 --- a/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload-members.html +++ b/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html b/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html index 6ef25e32..aa51dee3 100644 --- a/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html +++ b/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants-members.html b/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants-members.html index 8e7cf76f..63087ba5 100644 --- a/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants-members.html +++ b/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html b/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html index 1c0cd709..a40550e5 100644 --- a/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html +++ b/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry-members.html b/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry-members.html index 5d7c580e..2e962a45 100644 --- a/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry-members.html +++ b/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html b/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html index ad6e60de..39854334 100644 --- a/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html +++ b/docs/html/structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -144,7 +144,7 @@ Friends
    Example
    WeakReactionEntry e{WeakReactionType::ELECTRON_CAPTURE, 3.0f, 6.0f, 2.0f, -2.3f, -1.7f};
    std::cout << e << "\n"; // prints a compact summary
    gridfire::rates::weak::WeakReactionType::ELECTRON_CAPTURE
    @ ELECTRON_CAPTURE
    e− capture: (Z, e−) -> Z-1 + ν_e
    Definition weak_types.h:55
    -
    gridfire::rates::weak::WeakReactionEntry
    A single weak-reaction data point (type, state, and log values).
    Definition weak_types.h:200
    +
    gridfire::rates::weak::WeakReactionEntry
    A single weak-reaction data point (type, state, and log values).
    Definition weak_types.h:213

    Friends And Related Symbol Documentation

    diff --git a/docs/html/structgridfire_1_1reaclib_1_1_reaction_record-members.html b/docs/html/structgridfire_1_1reaclib_1_1_reaction_record-members.html index 69f71e7f..23b64493 100644 --- a/docs/html/structgridfire_1_1reaclib_1_1_reaction_record-members.html +++ b/docs/html/structgridfire_1_1reaclib_1_1_reaction_record-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1reaclib_1_1_reaction_record.html b/docs/html/structgridfire_1_1reaclib_1_1_reaction_record.html index cf230069..2b039364 100644 --- a/docs/html/structgridfire_1_1reaclib_1_1_reaction_record.html +++ b/docs/html/structgridfire_1_1reaclib_1_1_reaction_record.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1reaction_1_1_rate_coefficient_set-members.html b/docs/html/structgridfire_1_1reaction_1_1_rate_coefficient_set-members.html index da7f81f4..b2ef3c93 100644 --- a/docs/html/structgridfire_1_1reaction_1_1_rate_coefficient_set-members.html +++ b/docs/html/structgridfire_1_1reaction_1_1_rate_coefficient_set-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1reaction_1_1_rate_coefficient_set.html b/docs/html/structgridfire_1_1reaction_1_1_rate_coefficient_set.html index cbdac5e2..51a678c3 100644 --- a/docs/html/structgridfire_1_1reaction_1_1_rate_coefficient_set.html +++ b/docs/html/structgridfire_1_1reaction_1_1_rate_coefficient_set.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data-members.html b/docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data-members.html index 9b8a2d61..f049ea12 100644 --- a/docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data-members.html +++ b/docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html b/docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html index 19dc3065..4473b281 100644 --- a/docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html +++ b/docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context-members.html b/docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context-members.html index d9bb98ec..02328ec6 100644 --- a/docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context-members.html +++ b/docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -105,6 +105,8 @@ $(function(){initNavTree('structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy

    This is the complete list of members for gridfire::solver::CVODESolverStrategy::TimestepContext, including all inherited members.

    + + @@ -115,8 +117,8 @@ $(function(){initNavTree('structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy - - + +
    currentConvergenceFailuresgridfire::solver::CVODESolverStrategy::TimestepContext
    currentNonlinearIterationsgridfire::solver::CVODESolverStrategy::TimestepContext
    describe() const overridegridfire::solver::CVODESolverStrategy::TimestepContextvirtual
    dtgridfire::solver::CVODESolverStrategy::TimestepContext
    enginegridfire::solver::CVODESolverStrategy::TimestepContext
    stategridfire::solver::CVODESolverStrategy::TimestepContext
    tgridfire::solver::CVODESolverStrategy::TimestepContext
    T9gridfire::solver::CVODESolverStrategy::TimestepContext
    TimestepContext(double t, const N_Vector &state, double dt, double last_step_time, double t9, double rho, size_t num_steps, const DynamicEngine &engine, const std::vector< fourdst::atomic::Species > &networkSpecies)gridfire::solver::CVODESolverStrategy::TimestepContext
    ~SolverContextBase()=defaultgridfire::solver::SolverContextBasevirtual
    TimestepContext(double t, const N_Vector &state, double dt, double last_step_time, double t9, double rho, size_t num_steps, const DynamicEngine &engine, const std::vector< fourdst::atomic::Species > &networkSpecies, size_t currentConvergenceFailure, size_t currentNonlinearIterations)gridfire::solver::CVODESolverStrategy::TimestepContext
    ~SolverContextBase()=defaultgridfire::solver::SolverContextBasevirtual
    diff --git a/docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html b/docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html index 5fea06c5..ef72fedf 100644 --- a/docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html +++ b/docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -117,21 +117,21 @@ Inheritance diagram for gridfire::solver::CVODESolverStrategy::TimestepContext:<
    -gridfire::solver::SolverContextBase +gridfire::solver::SolverContextBase
    - - - + + + - - - + + +

    Public Member Functions

     TimestepContext (double t, const N_Vector &state, double dt, double last_step_time, double t9, double rho, size_t num_steps, const DynamicEngine &engine, const std::vector< fourdst::atomic::Species > &networkSpecies)
     Construct a context snapshot.
     
     TimestepContext (double t, const N_Vector &state, double dt, double last_step_time, double t9, double rho, size_t num_steps, const DynamicEngine &engine, const std::vector< fourdst::atomic::Species > &networkSpecies, size_t currentConvergenceFailure, size_t currentNonlinearIterations)
     Construct a context snapshot.
     
    std::vector< std::tuple< std::string, std::string > > describe () const override
     Human-readable description of the context fields.
     
    - Public Member Functions inherited from gridfire::solver::SolverContextBase
    virtual ~SolverContextBase ()=default
     
    - Public Member Functions inherited from gridfire::solver::SolverContextBase
    virtual ~SolverContextBase ()=default
     
    @@ -162,13 +162,19 @@ Public Attributes + + + + + +

    Public Attributes

    const std::vector< fourdst::atomic::Species > & networkSpecies
     Species layout.
     
    const size_t currentConvergenceFailures
     Total number of convergence failures.
     
    const size_t currentNonlinearIterations
     Total number of non linear iterations.
     

    Detailed Description

    Immutable view of the current integration state passed to callbacks.

    Fields capture CVODE time/state, step size, thermodynamic state, the engine reference, and the list of network species used to interpret the state vector layout.

    Constructor & Destructor Documentation

    - -

    ◆ TimestepContext()

    + +

    ◆ TimestepContext()

    @@ -216,7 +222,17 @@ Public Attributes - const std::vector< fourdst::atomic::Species > & networkSpecies ) + const std::vector< fourdst::atomic::Species > & networkSpecies, + + + + + size_t currentConvergenceFailure, + + + + + size_t currentNonlinearIterations )
    @@ -251,11 +267,43 @@ Public Attributes

    Human-readable description of the context fields.

    -

    Implements gridfire::solver::SolverContextBase.

    +

    Implements gridfire::solver::SolverContextBase.

    Member Data Documentation

    + +

    ◆ currentConvergenceFailures

    + +
    +
    + + + + +
    const size_t gridfire::solver::CVODESolverStrategy::TimestepContext::currentConvergenceFailures
    +
    + +

    Total number of convergence failures.

    + +
    +
    + +

    ◆ currentNonlinearIterations

    + +
    +
    + + + + +
    const size_t gridfire::solver::CVODESolverStrategy::TimestepContext::currentNonlinearIterations
    +
    + +

    Total number of non linear iterations.

    + +
    +

    ◆ dt

    diff --git a/docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.js b/docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.js index 22021c92..96695fa7 100644 --- a/docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.js +++ b/docs/html/structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.js @@ -1,7 +1,9 @@ var structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context = [ - [ "TimestepContext", "structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a406b36ce5f192c855eb3c8dcf0fde0bd", null ], + [ "TimestepContext", "structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a1637965300527d09bfc9f690272d7264", null ], [ "describe", "structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#ae3c6320ce7a8f41c9ae36c42d62b4204", null ], + [ "currentConvergenceFailures", "structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#adef40af49e162d2429db1030f6341d96", null ], + [ "currentNonlinearIterations", "structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#aefa6b183bf963f6e01c5157b7c0f158a", null ], [ "dt", "structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a6442d15673e6385bb6fdd11e1179c487", null ], [ "engine", "structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#af8c233f893bf740e81c5254d84534067", null ], [ "last_step_time", "structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a4a92187c15b7bcb90adebecc87e1436a", null ], diff --git a/docs/html/structgridfire_1_1trigger_1_1_trigger_result-members.html b/docs/html/structgridfire_1_1trigger_1_1_trigger_result-members.html index b7168da8..ef7c70b2 100644 --- a/docs/html/structgridfire_1_1trigger_1_1_trigger_result-members.html +++ b/docs/html/structgridfire_1_1trigger_1_1_trigger_result-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structgridfire_1_1trigger_1_1_trigger_result.html b/docs/html/structgridfire_1_1trigger_1_1_trigger_result.html index 1f524aaf..dfb2bff9 100644 --- a/docs/html/structgridfire_1_1trigger_1_1_trigger_result.html +++ b/docs/html/structgridfire_1_1trigger_1_1_trigger_result.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4-members.html b/docs/html/structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4-members.html index 15efb134..327ad40a 100644 --- a/docs/html/structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4-members.html +++ b/docs/html/structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html b/docs/html/structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html index acd9a8a6..02abbd6c 100644 --- a/docs/html/structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html +++ b/docs/html/structstd_1_1hash_3_01gridfire_1_1_q_s_e_cache_key_01_4.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structstd_1_1hash_3_01gridfire_1_1rates_1_1weak_1_1_table_axes_01_4-members.html b/docs/html/structstd_1_1hash_3_01gridfire_1_1rates_1_1weak_1_1_table_axes_01_4-members.html new file mode 100644 index 00000000..e67781ee --- /dev/null +++ b/docs/html/structstd_1_1hash_3_01gridfire_1_1rates_1_1weak_1_1_table_axes_01_4-members.html @@ -0,0 +1,118 @@ + + + + + + + +GridFire: Member List + + + + + + + + + + + + + + + + + +
    +
    + + + + + + +
    +
    GridFire v0.7.0-alpha +
    +
    General Purpose Nuclear Network
    +
    +
    + + + + + + + + +
    +
    + +
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    Loading...
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    No Matches
    +
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    +
    std::hash< gridfire::rates::weak::TableAxes > Member List
    +
    +
    + +

    This is the complete list of members for std::hash< gridfire::rates::weak::TableAxes >, including all inherited members.

    + + +
    operator()(gridfire::rates::weak::TableAxes t) const noexceptstd::hash< gridfire::rates::weak::TableAxes >inline
    +
    + + + + diff --git a/docs/html/structstd_1_1hash_3_01gridfire_1_1rates_1_1weak_1_1_table_axes_01_4.html b/docs/html/structstd_1_1hash_3_01gridfire_1_1rates_1_1weak_1_1_table_axes_01_4.html new file mode 100644 index 00000000..d40c2524 --- /dev/null +++ b/docs/html/structstd_1_1hash_3_01gridfire_1_1rates_1_1weak_1_1_table_axes_01_4.html @@ -0,0 +1,155 @@ + + + + + + + +GridFire: std::hash< gridfire::rates::weak::TableAxes > Struct Reference + + + + + + + + + + + + + + + + + +
    +
    + + + + + + +
    +
    GridFire v0.7.0-alpha +
    +
    General Purpose Nuclear Network
    +
    +
    + + + + + + + + +
    +
    + +
    +
    +
    + +
    + +
    +
    + + +
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    +Public Member Functions | +List of all members
    +
    std::hash< gridfire::rates::weak::TableAxes > Struct Reference
    +
    +
    + +

    #include <weak_types.h>

    + + + + +

    +Public Member Functions

    std::size_t operator() (gridfire::rates::weak::TableAxes t) const noexcept
     
    +

    Member Function Documentation

    + +

    ◆ operator()()

    + +
    +
    + + + + + +
    + + + + + + + +
    std::size_t std::hash< gridfire::rates::weak::TableAxes >::operator() (gridfire::rates::weak::TableAxes t) const
    +     		+inlinenoexcept
    +
    + +
    +
    +
    The documentation for this struct was generated from the following file: +
    +
    + + + + diff --git a/docs/html/structstd_1_1hash_3_01gridfire_1_1rates_1_1weak_1_1_table_axes_01_4.js b/docs/html/structstd_1_1hash_3_01gridfire_1_1rates_1_1weak_1_1_table_axes_01_4.js new file mode 100644 index 00000000..571d3b35 --- /dev/null +++ b/docs/html/structstd_1_1hash_3_01gridfire_1_1rates_1_1weak_1_1_table_axes_01_4.js @@ -0,0 +1,4 @@ +var structstd_1_1hash_3_01gridfire_1_1rates_1_1weak_1_1_table_axes_01_4 = +[ + [ "operator()", "structstd_1_1hash_3_01gridfire_1_1rates_1_1weak_1_1_table_axes_01_4.html#abab92065d884b95cdddcc2f8f6fdd490", null ] +]; \ No newline at end of file diff --git a/docs/html/structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4-members.html b/docs/html/structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4-members.html index 48d1c87c..2afee76d 100644 --- a/docs/html/structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4-members.html +++ b/docs/html/structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html b/docs/html/structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html index ba1c01a2..a4dd0258 100644 --- a/docs/html/structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html +++ b/docs/html/structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4-members.html b/docs/html/structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4-members.html index c297610b..e3739b70 100644 --- a/docs/html/structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4-members.html +++ b/docs/html/structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4-members.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html b/docs/html/structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html index 3af10f15..4236c894 100644 --- a/docs/html/structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html +++ b/docs/html/structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/table__format_8h.html b/docs/html/table__format_8h.html index 4ca3606e..174b3eec 100644 --- a/docs/html/table__format_8h.html +++ b/docs/html/table__format_8h.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/trigger__abstract_8h.html b/docs/html/trigger__abstract_8h.html index f3e6da5d..98fce5a5 100644 --- a/docs/html/trigger__abstract_8h.html +++ b/docs/html/trigger__abstract_8h.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/trigger__logical_8h.html b/docs/html/trigger__logical_8h.html index 68faf60d..45e1a0eb 100644 --- a/docs/html/trigger__logical_8h.html +++ b/docs/html/trigger__logical_8h.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/trigger__pprint_8h.html b/docs/html/trigger__pprint_8h.html index dcfd2f5f..fb1fce06 100644 --- a/docs/html/trigger__pprint_8h.html +++ b/docs/html/trigger__pprint_8h.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/trigger__result_8h.html b/docs/html/trigger__result_8h.html index 51ba7ee0..241d0e30 100644 --- a/docs/html/trigger__result_8h.html +++ b/docs/html/trigger__result_8h.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/types_2bindings_8cpp.html b/docs/html/types_2bindings_8cpp.html index f7c28b59..02dcf9c2 100644 --- a/docs/html/types_2bindings_8cpp.html +++ b/docs/html/types_2bindings_8cpp.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -107,6 +107,7 @@ $(function(){initNavTree('types_2bindings_8cpp.html',''); initResizable(true); }
    #include <pybind11/pybind11.h>
    #include <pybind11/stl.h>
    #include <pybind11/stl_bind.h>
    +#include <format>
    #include "bindings.h"
    #include "gridfire/network.h"
    diff --git a/docs/html/types_2bindings_8h.html b/docs/html/types_2bindings_8h.html index 81aa4b2d..a69a3014 100644 --- a/docs/html/types_2bindings_8h.html +++ b/docs/html/types_2bindings_8h.html @@ -29,7 +29,7 @@ diff --git a/docs/html/usage_8md.html b/docs/html/usage_8md.html index 215440a8..254e24b9 100644 --- a/docs/html/usage_8md.html +++ b/docs/html/usage_8md.html @@ -29,7 +29,7 @@ diff --git a/docs/html/utils_2bindings_8cpp.html b/docs/html/utils_2bindings_8cpp.html index 4a519013..4f32eef3 100644 --- a/docs/html/utils_2bindings_8cpp.html +++ b/docs/html/utils_2bindings_8cpp.html @@ -29,7 +29,7 @@ @@ -107,6 +107,8 @@ $(function(){initNavTree('utils_2bindings_8cpp.html',''); initResizable(true); }
    #include <pybind11/pybind11.h>
    #include <pybind11/stl_bind.h>
    #include "bindings.h"
    +#include "gridfire/utils/general_composition.h"
    +#include "gridfire/utils/hashing.h"
    #include "gridfire/utils/logging.h"
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    diff --git a/docs/html/weak_8cpp.html b/docs/html/weak_8cpp.html index 598d34ea..df065399 100644 --- a/docs/html/weak_8cpp.html +++ b/docs/html/weak_8cpp.html @@ -29,7 +29,7 @@ diff --git a/docs/html/weak_8h.html b/docs/html/weak_8h.html index e13408b2..679a8795 100644 --- a/docs/html/weak_8h.html +++ b/docs/html/weak_8h.html @@ -29,7 +29,7 @@ @@ -146,7 +146,7 @@ Namespaces

    diff --git a/docs/html/utils_2bindings_8h.html b/docs/html/utils_2bindings_8h.html index 45a35e37..ef36fc79 100644 --- a/docs/html/utils_2bindings_8h.html +++ b/docs/html/utils_2bindings_8h.html @@ -29,7 +29,7 @@

    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    - +

    Macros

    #define GRIDFIRE_WEAK_REACTION_LIB_SENTINEL   -60.0
    #define GRIDFIRE_WEAK_REACTION_LIB_SENTINEL   (-60.0)
     

    Macro Definition Documentation

    @@ -157,7 +157,7 @@ Macros
    - +
    #define GRIDFIRE_WEAK_REACTION_LIB_SENTINEL   -60.0#define GRIDFIRE_WEAK_REACTION_LIB_SENTINEL   (-60.0)
    diff --git a/docs/html/weak__interpolator_8cpp.html b/docs/html/weak__interpolator_8cpp.html index f60bfdbb..a4d53fc8 100644 --- a/docs/html/weak__interpolator_8cpp.html +++ b/docs/html/weak__interpolator_8cpp.html @@ -29,7 +29,7 @@ -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    @@ -107,6 +107,7 @@ $(function(){initNavTree('weak__interpolator_8cpp.html',''); initResizable(true)
    #include "gridfire/reaction/weak/weak_interpolator.h"
    #include "gridfire/reaction/reaction.h"
    #include "gridfire/reaction/weak/weak.h"
    +#include "gridfire/utils/hashing.h"
    #include <algorithm>
    #include <map>
    #include <set>
    @@ -116,6 +117,7 @@ $(function(){initNavTree('weak__interpolator_8cpp.html',''); initResizable(true) #include <expected>
    #include <ranges>
    #include "fourdst/composition/species.h"
    +#include "quill/LogMacros.h"
    diff --git a/docs/html/weak__interpolator_8h.html b/docs/html/weak__interpolator_8h.html index c9cf0244..1769c9ff 100644 --- a/docs/html/weak__interpolator_8h.html +++ b/docs/html/weak__interpolator_8h.html @@ -29,7 +29,7 @@ @@ -107,6 +107,7 @@ $(function(){initNavTree('weak__interpolator_8h.html',''); initResizable(true);
    #include "gridfire/reaction/weak/weak_types.h"
    #include "fourdst/composition/atomicSpecies.h"
    +#include "fourdst/logging/logging.h"
    #include <unordered_map>
    #include <cstdint>
    #include <vector>
    diff --git a/docs/html/weak__rate__library_8h.html b/docs/html/weak__rate__library_8h.html index 112b2762..c39fed5c 100644 --- a/docs/html/weak__rate__library_8h.html +++ b/docs/html/weak__rate__library_8h.html @@ -29,7 +29,7 @@
    diff --git a/docs/html/weak__types_8h.html b/docs/html/weak__types_8h.html index 932a7f5e..0526e302 100644 --- a/docs/html/weak__types_8h.html +++ b/docs/html/weak__types_8h.html @@ -29,7 +29,7 @@ @@ -127,7 +127,9 @@ Classes - + + + @@ -136,7 +138,7 @@ Classes - + @@ -150,6 +152,9 @@ Namespaces + + +

    Namespaces
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
    -
    GridFire 0.6.0 +
    GridFire v0.7.0-alpha
    General Purpose Nuclear Network
     Interpolated weak-rate payload at a single state. More...
     
    struct  gridfire::rates::weak::WeakRateDerivatives
     Partial derivatives of the log10() fields w.r.t. (T9, log10(rho*Ye), mu_e). More...
     Partial derivatives of the log10() fields w.r.t. (T9, log10(rho*Ye)). More...
     
    struct  std::hash< gridfire::rates::weak::TableAxes >
     
    struct  gridfire::rates::weak::BoundsErrorInfo
     Detailed bounds information for a BOUNDS_ERROR. More...
     Interpolation error with optional per-axis bounds details. More...
     
    struct  gridfire::rates::weak::IsotopeGrid
     Regular 3D grid and payloads for a single isotope (A,Z). More...
     Regular 2D grid and payloads for a single isotope (A,Z). More...
     
    struct  gridfire::rates::weak::WeakReactionEntry
     A single weak-reaction data point (type, state, and log values). More...
     
    namespace  gridfire::rates::weak
     
    namespace  std
     STL namespace.
     
    diff --git a/docs/html/weak__types_8h.js b/docs/html/weak__types_8h.js index 0d8c06cb..362e8b38 100644 --- a/docs/html/weak__types_8h.js +++ b/docs/html/weak__types_8h.js @@ -3,6 +3,7 @@ var weak__types_8h = [ "gridfire::rates::weak::RateDataRow", "structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html", "structgridfire_1_1rates_1_1weak_1_1_rate_data_row" ], [ "gridfire::rates::weak::WeakRatePayload", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload" ], [ "gridfire::rates::weak::WeakRateDerivatives", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives" ], + [ "std::hash< gridfire::rates::weak::TableAxes >", "structstd_1_1hash_3_01gridfire_1_1rates_1_1weak_1_1_table_axes_01_4.html", "structstd_1_1hash_3_01gridfire_1_1rates_1_1weak_1_1_table_axes_01_4" ], [ "gridfire::rates::weak::BoundsErrorInfo", "structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html", "structgridfire_1_1rates_1_1weak_1_1_bounds_error_info" ], [ "gridfire::rates::weak::InterpolationError", "structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html", "structgridfire_1_1rates_1_1weak_1_1_interpolation_error" ], [ "gridfire::rates::weak::IsotopeGrid", "structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html", "structgridfire_1_1rates_1_1weak_1_1_isotope_grid" ],

    Enumerations