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< div id = "projectname" > GridFire< span id = "projectnumber" >   0.6.0< / span >
2025-07-01 07:24:18 -04:00
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< div id = "projectbrief" > General Purpose Nuclear Network< / div >
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< div class = "headertitle" > < div class = "title" > gridfire::GraphEngine Member List< / div > < / div >
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< p > This is the complete list of members for < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > , including all inherited members.< / p >
< table class = "directory" >
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< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a8873331f5ae40a3f640dedbbed685ed9" > calculateAllDerivatives< / a > (const std::vector< T > & Y_in, T T9, T rho, T Ye, T mue) const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#aef12443d7980301d8bb89f4ba4890450" > calculateAllDerivativesUsingPrecomputation< / a > (const fourdst::composition::Composition & comp, const std::vector< double > & bare_rates, const std::vector< double > & bare_reverse_rates, double T9, double rho) const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#ae0c9159cc3467fd85d1a5895f1786c47" > calculateEpsDerivatives< / a > (const fourdst::composition::Composition & comp, double T9, double rho) const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a1675859971f0bd2db0650f8da54ed7eb" > calculateMolarReactionFlow< / a > (const reaction::Reaction & reaction, const fourdst::composition::Composition & comp, double T9, double rho) const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a2bea809d2efb3a5e7cc065ec80baebce" > calculateMolarReactionFlow< / a > (const reaction::Reaction & reaction, const std::vector< T > & Y, const T T9, const T rho, T Ye, T mue) const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a972d0705351167dc889a2f6c442e7a93" > calculateReverseMolarReactionFlow< / a > (const T T9, const T rho, std::vector< T > screeningFactors, const std::vector< T > & Y, size_t reactionIndex, const reaction::Reaction & reaction) const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#accf01734524a706ad03c9b9898af54b3" > calculateReverseRate< / a > (const reaction::Reaction & reaction, double T9, double rho, const fourdst::composition::Composition & comp) const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a01fc9fd5d576b66d07360d05e821c755" > calculateReverseRateTwoBody< / a > (const reaction::Reaction & reaction, const double T9, const double forwardRate, const double expFactor) const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a9340db538a507b96e186b60ba0450205" > calculateReverseRateTwoBodyDerivative< / a > (const reaction::Reaction & reaction, double T9, double rho, const fourdst::composition::Composition & comp, double reverseRate) const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a7acc98647427981a9602d251c9288012" > calculateRHSAndEnergy< / a > (const fourdst::composition::Composition & comp, double T9, double rho) const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a29b338630c959449c15881935ac30746" > collectAtomicReverseRateAtomicBases< / a > ()< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#aedf42d83bfcc28313b6b6454034d2efa" > collectNetworkSpecies< / a > ()< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a832e2fe066381811a3e0464806ff5e95" > exportToCSV< / a > (const std::string & filename) const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#adac8c7d62bae76e17fc060e86dadd929" > exportToDot< / a > (const std::string & filename) const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#ae11f6267077025ca342e2e263ad87e5e" > generateJacobianMatrix< / a > (const fourdst::composition::Composition & comp, double T9, double rho) const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a4e0bbc6448999e2ef06879270b7d3dec" > generateJacobianMatrix< / a > (const fourdst::composition::Composition & comp, double T9, double rho, const SparsityPattern & sparsityPattern) const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#aed726d36ee2b3796beff6067a1e4db38" > generateStoichiometryMatrix< / a > () override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a166a5f4349580f9aa0b930afec73fcc4" > getDepth< / a > () const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a8ab5308629b8707922e5954776254aa6" > getJacobianMatrixEntry< / a > (const fourdst::atomic::Species & rowSpecies, const fourdst::atomic::Species & colSpecies) const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a8c29d8bbde407e913be5eb77efb2c0c9" > getNetReactionStoichiometry< / a > (const reaction::Reaction & reaction)< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > static< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a3b7f3ba85821165f58f168bc68f86b2d" > getNetworkReactions< / a > () const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a0ed390f3e598ebba4e245ac90bb78767" > getNetworkSpecies< / a > () const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#add98ece49ec5c538bddf3cc77004fe44" > getPartitionFunction< / a > () const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a697f2004e0d02c59e83c7890742d7c9a" > getScreeningModel< / a > () const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a47df5a9c448dd1ce8654df819a6cc8ff" > getSpeciesDestructionTimescales< / a > (const fourdst::composition::Composition & comp, double T9, double rho) const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a9e426e6c178dd80bd58090489d3b2be9" > getSpeciesIndex< / a > (const fourdst::atomic::Species & species) const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a7dde968244f3c4934c7738445c709232" > getSpeciesTimescales< / a > (const fourdst::composition::Composition & comp, double T9, double rho) const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#ad90a2d770ebf098f0d6d5f5339961e95" > getStoichiometryMatrixEntry< / a > (const fourdst::atomic::Species & species, const reaction::Reaction & reaction) const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a38aaafb1d9a6548bc8e8cb672417bbbe" > GraphEngine< / a > (const fourdst::composition::Composition & composition, BuildDepthType=NetworkBuildDepth::Full)< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > explicit< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a3a03fbd767f495ca667f23789b07c293" > GraphEngine< / a > (const fourdst::composition::Composition & composition, const partition::PartitionFunction & partitionFunction, BuildDepthType buildDepth=NetworkBuildDepth::Full)< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > explicit< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a514cc6b5482d6a27902975da17b5e39e" > GraphEngine< / a > (const reaction::ReactionSet & reactions)< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > explicit< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#aa6202cee0c3c481eda77cc9a91bc126b" > involvesSpecies< / a > (const fourdst::atomic::Species & species) const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a015f8975701f028c29835d3a9794e00f" > isPrecomputationEnabled< / a > () const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#af04a9f8a629d6f6c58c477af0f1ab9e5" > isStale< / a > (const NetIn & netIn) override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#ae7a210d9ab13ad5fb0c612f027acabd0" > isUsingReverseReactions< / a > () const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a816797b1d656d416844489692af44cf6" > m_atomicReverseRates< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a3b17102b143435ddfdc015d7a50c4b18" > m_config< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a10c01bc20ae668c2857efb2a1783098e" > m_constants< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a80c73690d5af247ff9f2ba8b00abce01" > m_depth< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a1d5f6a3f217af7f4d0f95bdf7916b774" > m_epsADFun< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > mutable< / span > < span class = "mlabel" > private< / span > < / td > < / tr >
2025-07-24 11:10:45 -04:00
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a19b2eea0e8d05ac90f9fd7120bdc6e06" > m_full_jacobian_sparsity_pattern< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
2025-10-08 11:17:09 -04:00
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a8ff064c9996772281984f88ee492d04a" > m_indexToSpeciesMap< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a250cc6350dc052fbdfdf9a02066e7891" > m_jac_work< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > mutable< / span > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a2f1718c89d4aaad028102724d18fa910" > m_jacobianMatrix< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > mutable< / span > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a483979fc154adc88d029b3b672066d53" > m_logger< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a92d26068ba139e47d335f5fe9e2814cc" > m_networkSpecies< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a30e09ed0bce6aa5fc89beaa316a7b827" > m_networkSpeciesMap< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a3621f36d77ea8c738ad7de6e5b35ca3e" > m_partitionFunction< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a5d431d5385b1219ba29689eb29601ea3" > m_precomputedReactions< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a5d6cc63b99b467c2a976d1fbaaa1dfa3" > m_reactionIDMap< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#ad3b97595871d1f62ee7f4726b601ebef" > m_reactions< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a2e22b111f6d00ecc9e3804a71f1ce876" > m_rhsADFun< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > mutable< / span > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#af17cf3762abac3efcab9a8e87c961210" > m_screeningModel< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a52edc3e88f1e8fc497e1e63972d63c80" > m_screeningType< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#ad8237c252145a75092202d00f5e1ddf7" > m_speciesToIndexMap< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#ad1cb5fd32efc37668e2d9ecf0c72ad24" > m_stoichiometryMatrix< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a191cff35402d3c97c82c5c966a39d0de" > m_usePrecomputation< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a32d3efbf4c3d5158f87c0c732cdc26dc" > m_useReverseReactions< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a9ac5893030802b0b846552949e866340" > m_weakRateInterpolator< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
2025-07-24 11:10:45 -04:00
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a27f3a928e1f6bbe7e847cffed6db729f" > mapNetInToMolarAbundanceVector< / a > (const NetIn & netIn) const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
2025-07-01 11:40:51 -04:00
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a26602e1b3c610780a47b5a6511d6d567" > populateReactionIDMap< / a > ()< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a47202c43342b96480070874bffce1391" > populateSpeciesToIndexMap< / a > ()< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
2025-07-01 15:06:22 -04:00
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a92644bc333bff69c5685be4552ca12fd" > precomputeNetwork< / a > ()< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
2025-07-24 11:10:45 -04:00
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#ae7a371be61ab09b3fa4a93f05bd44e5e" > primeEngine< / a > (const NetIn & netIn) override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#ad9d6c70ace5cbbf7f3aa7b31fce39490" > rebuild< / a > (const fourdst::composition::Composition & comp, const BuildDepthType depth) override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
2025-10-08 11:17:09 -04:00
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#ab29ef3225c8fcda012b10765df064b63" > recordADTape< / a > () const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a16b8cd1b0e19b4d4519596a4e22eaf5c" > recordEpsADTape< / a > () const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a8d0c0bd54a2908cff62dae7af0c149b5" > reserveJacobianMatrix< / a > () const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a52288e2629609c8438a3c9bc3f910016" > setNetworkReactions< / a > (const reaction::ReactionSet & reactions) override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a6c5410878496abc349ba30b691cdf0f1" > setPrecomputation< / a > (bool precompute)< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a9bc768ca8ca59d442c0d05cb04e36d7c" > setScreeningModel< / a > (screening::ScreeningType model) override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a409991d527ea4d4b05d1af907fe5d197" > setUseReverseReactions< / a > (bool useReverse)< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#acdce8d87e23a2cd1504bc9472e538c0f" > syncInternalMaps< / a > ()< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a5ac7cff23e70bd07ba7e510b753e2ab6" > update< / a > (const NetIn & netIn) override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#acf4cfccea20f5cb31c9886bf233a28be" > validateConservation< / a > () const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_engine.html#a2e7970bed2100699f226f4141d5db037" > ~Engine< / a > ()=default< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_engine.html" > gridfire::Engine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
2025-07-01 07:24:18 -04:00
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