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< div id = "projectname" > GridFire< span id = "projectnumber" >   0.6.0< / span >
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< div id = "projectbrief" > General Purpose Nuclear Network< / div >
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< div class = "headertitle" > < div class = "title" > gridfire::GraphEngine Member List< / div > < / div >
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< p > This is the complete list of members for < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > , including all inherited members.< / p >
< table class = "directory" >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#af41df9ce979b6410e12642cb093916c9" > calculateAllDerivatives< / a > (const std::vector< T > & Y_in, T T9, T rho) const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#aaf4d54e4b774ab8ec8eabec006579d31" > calculateAllDerivatives< / a > (const std::vector< double > & Y_in, const double T9, const double rho) const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a71a3d1181b90c3becdc5d9a3da05b9c9" > calculateAllDerivatives< / a > (const std::vector< ADDouble > & Y_in, const ADDouble & T9, const ADDouble & rho) const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
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< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a97f98706b51fbe0d167ed81ffe58c438" > calculateAllDerivativesUsingPrecomputation< / a > (const std::vector< double > & Y_in, const std::vector< double > & bare_rates, const std::vector< double > & bare_reverse_rates, double T9, double rho) const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
2025-07-01 15:06:22 -04:00
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a9245642b741f215e52861d00e756fb3f" > calculateMolarReactionFlow< / a > (const reaction::Reaction & reaction, const std::vector< double > & Y, const double T9, const double rho) const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a5e96b5a0b34c8932f0e14eabda57f1a4" > calculateMolarReactionFlow< / a > (const reaction::Reaction & reaction, const std::vector< T > & Y, const T T9, const T rho) const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
2025-07-24 11:10:45 -04:00
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a17774cd9ffcf1ba94019df766a0984a0" > calculateReverseMolarReactionFlow< / a > (T T9, T rho, std::vector< T > screeningFactors, std::vector< T > Y, size_t reactionIndex, const reaction::LogicalReaction & reaction) const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a0b7b85f824e1021ae6e56b644db53b28" > calculateReverseRate< / a > (const reaction::Reaction & reaction, double T9) const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a01fc9fd5d576b66d07360d05e821c755" > calculateReverseRateTwoBody< / a > (const reaction::Reaction & reaction, const double T9, const double forwardRate, const double expFactor) const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#af28950c5af3a92eb03a1a64ed0f913e7" > calculateReverseRateTwoBodyDerivative< / a > (const reaction::Reaction & reaction, const double T9, const double reverseRate) const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#aaed3743a52246b0f7bf03995e1c12081" > calculateRHSAndEnergy< / a > (const std::vector< double > & Y, const double T9, const double rho) const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a29b338630c959449c15881935ac30746" > collectAtomicReverseRateAtomicBases< / a > ()< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#aedf42d83bfcc28313b6b6454034d2efa" > collectNetworkSpecies< / a > ()< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a832e2fe066381811a3e0464806ff5e95" > exportToCSV< / a > (const std::string & filename) const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#adac8c7d62bae76e17fc060e86dadd929" > exportToDot< / a > (const std::string & filename) const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#ad049a295e2bb0f3e97b76d5742875119" > generateJacobianMatrix< / a > (const std::vector< double > & Y_dynamic, const double T9, const double rho) const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a9687eef88c97eeb7f8680acb230f8ac1" > generateJacobianMatrix< / a > (const std::vector< double > & Y_dynamic, double T9, double rho, const SparsityPattern & sparsityPattern) const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
2025-07-01 15:06:22 -04:00
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#aed726d36ee2b3796beff6067a1e4db38" > generateStoichiometryMatrix< / a > () override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
2025-07-24 11:10:45 -04:00
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a166a5f4349580f9aa0b930afec73fcc4" > getDepth< / a > () const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a303e6093591cde91430f866a04a8be7c" > getJacobianMatrixEntry< / a > (const int i, const int j) const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a8c29d8bbde407e913be5eb77efb2c0c9" > getNetReactionStoichiometry< / a > (const reaction::Reaction & reaction)< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > static< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#ad45650d10fc5dff1673ae3f806d067da" > getNetworkReactions< / a > () const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a0ed390f3e598ebba4e245ac90bb78767" > getNetworkSpecies< / a > () const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#add98ece49ec5c538bddf3cc77004fe44" > getPartitionFunction< / a > () const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < / td > < / tr >
2025-07-01 15:06:22 -04:00
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a697f2004e0d02c59e83c7890742d7c9a" > getScreeningModel< / a > () const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
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< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#aef8f6bde24d27345067b71084330c7da" > getSpeciesDestructionTimescales< / a > (const std::vector< double > & Y, double T9, double rho) const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a914f6abc61805cddaebcb8f3cf470dda" > getSpeciesIndex< / a > (const fourdst::atomic::Species & species) const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a65f9f33cddb0bbd1da7c9d0cff23d581" > getSpeciesTimescales< / a > (const std::vector< double > & Y, double T9, double rho) const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
2025-07-01 15:06:22 -04:00
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a6b5feaf788bade212b7c8df7ac8c8152" > getStoichiometryMatrixEntry< / a > (const int speciesIndex, const int reactionIndex) const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
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< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#afad967546b611d9c005268760feb75d5" > GraphEngine< / a > (const fourdst::composition::Composition & composition, const BuildDepthType=NetworkBuildDepth::Full)< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > explicit< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a39d9838ed40bea71ee6c552bb5969026" > GraphEngine< / a > (const fourdst::composition::Composition & composition, const partition::PartitionFunction & partitionFunction, const BuildDepthType buildDepth=NetworkBuildDepth::Full)< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > explicit< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a1e7e851dfa21d41c2dc533ba56fc4c7b" > GraphEngine< / a > (const reaction::LogicalReactionSet & reactions)< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > explicit< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#aa6202cee0c3c481eda77cc9a91bc126b" > involvesSpecies< / a > (const fourdst::atomic::Species & species) const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a015f8975701f028c29835d3a9794e00f" > isPrecomputationEnabled< / a > () const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#af04a9f8a629d6f6c58c477af0f1ab9e5" > isStale< / a > (const NetIn & netIn) override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#ae7a210d9ab13ad5fb0c612f027acabd0" > isUsingReverseReactions< / a > () const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a816797b1d656d416844489692af44cf6" > m_atomicReverseRates< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
2025-07-01 11:40:51 -04:00
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a3b17102b143435ddfdc015d7a50c4b18" > m_config< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
2025-07-01 15:06:22 -04:00
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a10c01bc20ae668c2857efb2a1783098e" > m_constants< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
2025-07-24 11:10:45 -04:00
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a80c73690d5af247ff9f2ba8b00abce01" > m_depth< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a19b2eea0e8d05ac90f9fd7120bdc6e06" > m_full_jacobian_sparsity_pattern< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a250cc6350dc052fbdfdf9a02066e7891" > m_jac_work< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > mutable< / span > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a2f1718c89d4aaad028102724d18fa910" > m_jacobianMatrix< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > mutable< / span > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a483979fc154adc88d029b3b672066d53" > m_logger< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a92d26068ba139e47d335f5fe9e2814cc" > m_networkSpecies< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a30e09ed0bce6aa5fc89beaa316a7b827" > m_networkSpeciesMap< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a3621f36d77ea8c738ad7de6e5b35ca3e" > m_partitionFunction< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
2025-07-01 15:06:22 -04:00
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a5d431d5385b1219ba29689eb29601ea3" > m_precomputedReactions< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a5d6cc63b99b467c2a976d1fbaaa1dfa3" > m_reactionIDMap< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#acb7c4f5108b0efeae48ad15598e808c3" > m_reactions< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
2025-07-24 11:10:45 -04:00
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a2e22b111f6d00ecc9e3804a71f1ce876" > m_rhsADFun< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > mutable< / span > < span class = "mlabel" > private< / span > < / td > < / tr >
2025-07-01 15:06:22 -04:00
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#af17cf3762abac3efcab9a8e87c961210" > m_screeningModel< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a52edc3e88f1e8fc497e1e63972d63c80" > m_screeningType< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#ad8237c252145a75092202d00f5e1ddf7" > m_speciesToIndexMap< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#ad1cb5fd32efc37668e2d9ecf0c72ad24" > m_stoichiometryMatrix< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a191cff35402d3c97c82c5c966a39d0de" > m_usePrecomputation< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
2025-07-24 11:10:45 -04:00
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a32d3efbf4c3d5158f87c0c732cdc26dc" > m_useReverseReactions< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a27f3a928e1f6bbe7e847cffed6db729f" > mapNetInToMolarAbundanceVector< / a > (const NetIn & netIn) const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
2025-07-01 11:40:51 -04:00
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a26602e1b3c610780a47b5a6511d6d567" > populateReactionIDMap< / a > ()< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a47202c43342b96480070874bffce1391" > populateSpeciesToIndexMap< / a > ()< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
2025-07-01 15:06:22 -04:00
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a92644bc333bff69c5685be4552ca12fd" > precomputeNetwork< / a > ()< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
2025-07-24 11:10:45 -04:00
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#ae7a371be61ab09b3fa4a93f05bd44e5e" > primeEngine< / a > (const NetIn & netIn) override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#ad9d6c70ace5cbbf7f3aa7b31fce39490" > rebuild< / a > (const fourdst::composition::Composition & comp, const BuildDepthType depth) override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
2025-07-01 15:06:22 -04:00
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a95563f6bc86007d9ee053a0f1e15b889" > recordADTape< / a > ()< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
2025-07-24 11:10:45 -04:00
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a8d0c0bd54a2908cff62dae7af0c149b5" > reserveJacobianMatrix< / a > () const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a371ba0881d6903ddb2d586faa61805d0" > setNetworkReactions< / a > (const reaction::LogicalReactionSet & reactions) override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a6c5410878496abc349ba30b691cdf0f1" > setPrecomputation< / a > (bool precompute)< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < / td > < / tr >
2025-07-31 15:04:57 -04:00
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a9bc768ca8ca59d442c0d05cb04e36d7c" > setScreeningModel< / a > (screening::ScreeningType model) override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
2025-07-24 11:10:45 -04:00
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a409991d527ea4d4b05d1af907fe5d197" > setUseReverseReactions< / a > (bool useReverse)< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < / td > < / tr >
2025-07-01 07:24:18 -04:00
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#acdce8d87e23a2cd1504bc9472e538c0f" > syncInternalMaps< / a > ()< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
2025-07-24 11:10:45 -04:00
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#a5ac7cff23e70bd07ba7e510b753e2ab6" > update< / a > (const NetIn & netIn) override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
2025-07-30 15:12:46 -04:00
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html#acf4cfccea20f5cb31c9886bf233a28be" > validateConservation< / a > () const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > gridfire::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_engine.html#a2e7970bed2100699f226f4141d5db037" > ~Engine< / a > ()=default< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1_engine.html" > gridfire::Engine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
2025-07-01 07:24:18 -04:00
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