/* ***********************************************************************
//
//   Copyright (C) 2025 -- The 4D-STAR Collaboration
//   File Author: Emily Boudreaux
//   Last Modified: April 21, 2025
//
//   4DSSE is free software; you can use it and/or modify
//   it under the terms and restrictions the GNU General Library Public
//   License version 3 (GPLv3) as published by the Free Software Foundation.
//
//   4DSSE is distributed in the hope that it will be useful,
//   but WITHOUT ANY WARRANTY; without even the implied warranty of
//   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
//   See the GNU Library General Public License for more details.
//
//   You should have received a copy of the GNU Library General Public License
//   along with this software; if not, write to the Free Software
//   Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
//
// *********************************************************************** */
#pragma once

#include "mfem.hpp"
#include "4DSTARTypes.h"
#include <memory>

#include "probe.h"

class SchurCompliment final : public mfem::Operator {
public:
    SchurCompliment(const mfem::SparseMatrix &QOp, const mfem::SparseMatrix &DOp, const mfem::SparseMatrix &MOp, const mfem::Solver &GradInvOp);
    SchurCompliment(const mfem::SparseMatrix &QOp, const mfem::SparseMatrix &DOp, const mfem::SparseMatrix &MOp);
    ~SchurCompliment() override = default;
    void Mult(const mfem::Vector &x, mfem::Vector &y) const override;
    void SetOperator(const mfem::SparseMatrix &QOp, const mfem::SparseMatrix &DOp, const mfem::SparseMatrix &MOp, const mfem::Solver &
                     GradInvOp);
    void updateInverseNonlinearJacobian(const mfem::Solver &gradInv);

private:
    void updateConstantTerms(const mfem::SparseMatrix &QOp, const mfem::SparseMatrix &DOp, const mfem::SparseMatrix &MOp);

private:

    // Note that these are not owned by this class
    const mfem::SparseMatrix* m_QOp = nullptr;
    const mfem::SparseMatrix* m_DOp = nullptr;
    const mfem::SparseMatrix* m_MOp = nullptr;
    const mfem::Solver* m_GradInvOp = nullptr;
    int m_nPhi = 0;
    int m_nTheta = 0;

    mutable std::unique_ptr<mfem::SparseMatrix> m_matrixForm;
};

class GMRESInverter final : public mfem::Operator {
public:
    explicit GMRESInverter(const SchurCompliment& op);
    ~GMRESInverter() override = default;
    void Mult(const mfem::Vector &x, mfem::Vector &y) const override;

private:
    const SchurCompliment& m_op;
    mfem::GMRESSolver m_solver;
};

class PolytropeOperator final : public mfem::Operator {
public:
    PolytropeOperator(
        std::unique_ptr<mfem::MixedBilinearForm> M,
        std::unique_ptr<mfem::MixedBilinearForm> Q,
        std::unique_ptr<mfem::BilinearForm> D,
        std::unique_ptr<mfem::NonlinearForm> f,
        const mfem::Array<int> &blockOffsets);

    void populate_free_dof_array();


    ~PolytropeOperator() override = default;

    void Mult(const mfem::Vector &xFree, mfem::Vector &yFree) const override;

    mfem::Operator& GetGradient(const mfem::Vector &xFree) const override;

    void set_essential_true_dofs(const SSE::MFEMArrayPair& theta_ess_tdofs, const SSE::MFEMArrayPair& phi_ess_tdofs);
    void set_essential_true_dofs(const SSE::MFEMArrayPairSet& ess_tdof_pair_set);

    SSE::MFEMArrayPairSet get_essential_true_dofs() const;

    bool isFinalized() const { return m_isFinalized; }

    void finalize(const mfem::Vector &initTheta);

    const mfem::Array<int>& get_block_offsets() const { return m_blockOffsets; }
    const mfem::Array<int>& get_reduced_block_offsets() const {return m_reducedBlockOffsets; }

    const mfem::BlockOperator &get_jacobian_operator() const;

    mfem::BlockDiagonalPreconditioner &get_preconditioner() const;

    int get_reduced_system_size() const;


private:
    Probe::LogManager& m_logManager = Probe::LogManager::getInstance();
    quill::Logger* m_logger = m_logManager.getLogger("log");
    std::unique_ptr<mfem::MixedBilinearForm> m_M;
    std::unique_ptr<mfem::MixedBilinearForm> m_Q;
    std::unique_ptr<mfem::BilinearForm> m_D;
    std::unique_ptr<mfem::NonlinearForm> m_f;

    std::unique_ptr<mfem::SparseMatrix> m_Mmat;
    std::unique_ptr<mfem::SparseMatrix> m_Qmat;
    std::unique_ptr<mfem::SparseMatrix> m_Dmat;

    mutable mfem::Vector m_state;
    mfem::Array<int> m_freeDofs;

    // These are used to store the reduced system matrices after essential dofs have been eliminated
    std::unique_ptr<mfem::SparseMatrix> m_MReduced;
    std::unique_ptr<mfem::SparseMatrix> m_QReduced;
    std::unique_ptr<mfem::SparseMatrix> m_DReduced;

    const mfem::Array<int> m_blockOffsets;
    mfem::Array<int> m_reducedBlockOffsets;

    SSE::MFEMArrayPair m_theta_ess_tdofs;
    SSE::MFEMArrayPair m_phi_ess_tdofs;

    std::unique_ptr<mfem::ScaledOperator> m_negQ_mat;
    mutable std::unique_ptr<mfem::BlockOperator> m_jacobian;

    mutable std::unique_ptr<SchurCompliment> m_schurCompliment;
    mutable std::unique_ptr<GMRESInverter> m_invSchurCompliment;
    mutable std::unique_ptr<mfem::Solver> m_invNonlinearJacobian;

    mutable std::unique_ptr<mfem::BlockDiagonalPreconditioner> m_schurPreconditioner;

    bool m_isFinalized = false;

private:
    void update_inverse_nonlinear_jacobian(const mfem::Operator &grad) const;
    void update_inverse_schur_compliment() const;
    void update_preconditioner(const mfem::Operator &grad) const;
    void scatter_boundary_conditions();
    void construct_matrix_representations();
    void construct_reduced_block_offsets();
    void construct_jacobian_constant_terms();
};