Emily Boudreaux
9fab4fbfae
Added more documentation, also moved all engine code into gridfire::engine namespace to be more in line with other parts of teh code base
70 lines
2.1 KiB
C++
70 lines
2.1 KiB
C++
#include "gridfire/engine/views/engine_priming.h"
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#include "gridfire/solver/solver.h"
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#include "fourdst/atomic/species.h"
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#include "quill/LogMacros.h"
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#include "quill/Logger.h"
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#include <vector>
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#include <string>
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#include <unordered_set>
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#include <unordered_map>
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namespace gridfire::engine {
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using fourdst::atomic::species;
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NetworkPrimingEngineView::NetworkPrimingEngineView(
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const std::string &primingSymbol,
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GraphEngine &baseEngine
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) :
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DefinedEngineView(
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constructPrimingReactionSet(
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species.at(primingSymbol),
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baseEngine
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),
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baseEngine
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),
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m_primingSpecies(species.at(primingSymbol)) {}
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NetworkPrimingEngineView::NetworkPrimingEngineView(
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const fourdst::atomic::Species &primingSpecies,
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GraphEngine &baseEngine
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) :
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DefinedEngineView(
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constructPrimingReactionSet(
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primingSpecies,
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baseEngine
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),
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baseEngine
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),
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m_primingSpecies(primingSpecies) {
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}
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std::vector<std::string> NetworkPrimingEngineView::constructPrimingReactionSet(
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const fourdst::atomic::Species &primingSpecies,
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const GraphEngine &baseEngine
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) const {
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std::unordered_set<std::string> primeReactions;
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for (const auto &reaction : baseEngine.getNetworkReactions()) {
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if (reaction->contains(primingSpecies)) {
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primeReactions.insert(std::string(reaction->id()));
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}
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}
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if (primeReactions.empty()) {
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LOG_INFO(m_logger, "No priming reactions found for species '{}', returning empty peName set.", primingSpecies.name());
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return std::vector<std::string>{};
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// m_logger->flush_log();
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// throw std::runtime_error("No priming reactions found for species '" + std::string(primingSpecies.name()) + "'.");
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}
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std::vector<std::string> primingReactionSet(primeReactions.begin(), primeReactions.end());
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// LOG_INFO(m_logger, "Constructed priming reaction set with {} reactions for species '{}'.", primingReactionSet.size(), primingSpecies.name());
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return primingReactionSet;
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}
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}
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