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<div id="projectbrief">General Purpose Nuclear Network</div>
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<a href="network_8cpp.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a id="l00001" name="l00001"></a><span class="lineno"> 1</span><span class="comment">/* ***********************************************************************</span></div>
<div class="line"><a id="l00002" name="l00002"></a><span class="lineno"> 2</span><span class="comment">//</span></div>
<div class="line"><a id="l00003" name="l00003"></a><span class="lineno"> 3</span><span class="comment">// Copyright (C) 2025 -- The 4D-STAR Collaboration</span></div>
<div class="line"><a id="l00004" name="l00004"></a><span class="lineno"> 4</span><span class="comment">// File Authors: Aaron Dotter, Emily Boudreaux</span></div>
<div class="line"><a id="l00005" name="l00005"></a><span class="lineno"> 5</span><span class="comment">// Last Modified: March 21, 2025</span></div>
<div class="line"><a id="l00006" name="l00006"></a><span class="lineno"> 6</span><span class="comment">//</span></div>
<div class="line"><a id="l00007" name="l00007"></a><span class="lineno"> 7</span><span class="comment">// 4DSSE is free software; you can use it and/or modify</span></div>
<div class="line"><a id="l00008" name="l00008"></a><span class="lineno"> 8</span><span class="comment">// it under the terms and restrictions the GNU General Library Public</span></div>
<div class="line"><a id="l00009" name="l00009"></a><span class="lineno"> 9</span><span class="comment">// License version 3 (GPLv3) as published by the Free Software Foundation.</span></div>
<div class="line"><a id="l00010" name="l00010"></a><span class="lineno"> 10</span><span class="comment">//</span></div>
<div class="line"><a id="l00011" name="l00011"></a><span class="lineno"> 11</span><span class="comment">// 4DSSE is distributed in the hope that it will be useful,</span></div>
<div class="line"><a id="l00012" name="l00012"></a><span class="lineno"> 12</span><span class="comment">// but WITHOUT ANY WARRANTY; without even the implied warranty of</span></div>
<div class="line"><a id="l00013" name="l00013"></a><span class="lineno"> 13</span><span class="comment">// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.</span></div>
<div class="line"><a id="l00014" name="l00014"></a><span class="lineno"> 14</span><span class="comment">// See the GNU Library General Public License for more details.</span></div>
<div class="line"><a id="l00015" name="l00015"></a><span class="lineno"> 15</span><span class="comment">//</span></div>
<div class="line"><a id="l00016" name="l00016"></a><span class="lineno"> 16</span><span class="comment">// You should have received a copy of the GNU Library General Public License</span></div>
<div class="line"><a id="l00017" name="l00017"></a><span class="lineno"> 17</span><span class="comment">// along with this software; if not, write to the Free Software</span></div>
<div class="line"><a id="l00018" name="l00018"></a><span class="lineno"> 18</span><span class="comment">// Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA</span></div>
<div class="line"><a id="l00019" name="l00019"></a><span class="lineno"> 19</span><span class="comment">//</span></div>
<div class="line"><a id="l00020" name="l00020"></a><span class="lineno"> 20</span><span class="comment">// *********************************************************************** */</span></div>
<div class="line"><a id="l00021" name="l00021"></a><span class="lineno"> 21</span><span class="preprocessor">#include &quot;<a class="code" href="network_8h.html">gridfire/network.h</a>&quot;</span></div>
<div class="line"><a id="l00022" name="l00022"></a><span class="lineno"> 22</span><span class="preprocessor">#include &quot;<a class="code" href="reaclib_8h.html">gridfire/reaction/reaclib.h</a>&quot;</span></div>
<div class="line"><a id="l00023" name="l00023"></a><span class="lineno"> 23</span><span class="preprocessor">#include &quot;<a class="code" href="reaction_8h.html">gridfire/reaction/reaction.h</a>&quot;</span></div>
<div class="line"><a id="l00024" name="l00024"></a><span class="lineno"> 24</span> </div>
<div class="line"><a id="l00025" name="l00025"></a><span class="lineno"> 25</span><span class="preprocessor">#include &lt;ranges&gt;</span></div>
<div class="line"><a id="l00026" name="l00026"></a><span class="lineno"> 26</span> </div>
<div class="line"><a id="l00027" name="l00027"></a><span class="lineno"> 27</span><span class="preprocessor">#include &quot;quill/LogMacros.h&quot;</span></div>
<div class="line"><a id="l00028" name="l00028"></a><span class="lineno"> 28</span> </div>
<div class="line"><a id="l00029" name="l00029"></a><span class="lineno"> 29</span><span class="keyword">namespace </span><a class="code hl_namespace" href="namespacegridfire.html">gridfire</a> {</div>
<div class="foldopen" id="foldopen00030" data-start="{" data-end="}">
<div class="line"><a id="l00030" name="l00030"></a><span class="lineno"><a class="line" href="structgridfire_1_1_net_in.html#a47781e8d5503e3b4f12d669e2cbcfb65"> 30</a></span> std::vector&lt;double&gt; <a class="code hl_function" href="structgridfire_1_1_net_in.html#a47781e8d5503e3b4f12d669e2cbcfb65">NetIn::MolarAbundance</a>()<span class="keyword"> const </span>{</div>
<div class="line"><a id="l00031" name="l00031"></a><span class="lineno"> 31</span> std::vector &lt;double&gt; y;</div>
<div class="line"><a id="l00032" name="l00032"></a><span class="lineno"> 32</span> y.reserve(<a class="code hl_variable" href="structgridfire_1_1_net_in.html#a13058f4929e72c1187abbebcddb8aed1">composition</a>.getRegisteredSymbols().size());</div>
<div class="line"><a id="l00033" name="l00033"></a><span class="lineno"> 33</span> <span class="keyword">const</span> <span class="keyword">auto</span> [fst, snd] = <a class="code hl_variable" href="structgridfire_1_1_net_in.html#a13058f4929e72c1187abbebcddb8aed1">composition</a>.getComposition();</div>
<div class="line"><a id="l00034" name="l00034"></a><span class="lineno"> 34</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span> &amp;name: fst | std::views::keys) {</div>
<div class="line"><a id="l00035" name="l00035"></a><span class="lineno"> 35</span> y.push_back(<a class="code hl_variable" href="structgridfire_1_1_net_in.html#a13058f4929e72c1187abbebcddb8aed1">composition</a>.getMolarAbundance(name));</div>
<div class="line"><a id="l00036" name="l00036"></a><span class="lineno"> 36</span> }</div>
<div class="line"><a id="l00037" name="l00037"></a><span class="lineno"> 37</span> <span class="keywordflow">return</span> y;</div>
<div class="line"><a id="l00038" name="l00038"></a><span class="lineno"> 38</span> }</div>
</div>
<div class="line"><a id="l00039" name="l00039"></a><span class="lineno"> 39</span> </div>
<div class="line"><a id="l00040" name="l00040"></a><span class="lineno"> 40</span> </div>
<div class="foldopen" id="foldopen00041" data-start="{" data-end="}">
<div class="line"><a id="l00041" name="l00041"></a><span class="lineno"><a class="line" href="classgridfire_1_1_network.html#a20b631f2404bfdec2333f680a62abf55"> 41</a></span> <a class="code hl_function" href="classgridfire_1_1_network.html#a20b631f2404bfdec2333f680a62abf55">Network::Network</a>(<span class="keyword">const</span> <a class="code hl_enumeration" href="namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37">NetworkFormat</a> format) :</div>
<div class="line"><a id="l00042" name="l00042"></a><span class="lineno"> 42</span> <a class="code hl_variable" href="classgridfire_1_1_network.html#a9f8802012728ef5fea0e8cd465044e09">m_config</a>(fourdst::config::Config::getInstance()),</div>
<div class="line"><a id="l00043" name="l00043"></a><span class="lineno"> 43</span> <a class="code hl_variable" href="classgridfire_1_1_network.html#a0bb7c7be9a3c3212ef6dcbf26dcacb16">m_logManager</a>(fourdst::logging::LogManager::getInstance()),</div>
<div class="line"><a id="l00044" name="l00044"></a><span class="lineno"> 44</span> <a class="code hl_variable" href="classgridfire_1_1_network.html#a960d309defc570f92d296ce4b93920e5">m_logger</a>(<a class="code hl_variable" href="classgridfire_1_1_network.html#a0bb7c7be9a3c3212ef6dcbf26dcacb16">m_logManager</a>.getLogger(<span class="stringliteral">&quot;log&quot;</span>)),</div>
<div class="line"><a id="l00045" name="l00045"></a><span class="lineno"> 45</span> <a class="code hl_variable" href="classgridfire_1_1_network.html#a37218e18f1bdbda7be94aa230f47dd18">m_format</a>(format),</div>
<div class="line"><a id="l00046" name="l00046"></a><span class="lineno"> 46</span> <a class="code hl_variable" href="classgridfire_1_1_network.html#adf7002883160101c9f9d1b376b265410">m_constants</a>(fourdst::constant::Constants::getInstance()){</div>
<div class="line"><a id="l00047" name="l00047"></a><span class="lineno"> 47</span> <span class="keywordflow">if</span> (format == <a class="code hl_enumvalue" href="namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37aac700abde5f6ff8b7328193eb19697b2">NetworkFormat::UNKNOWN</a>) {</div>
<div class="line"><a id="l00048" name="l00048"></a><span class="lineno"> 48</span> LOG_ERROR(<a class="code hl_variable" href="classgridfire_1_1_network.html#a960d309defc570f92d296ce4b93920e5">m_logger</a>, <span class="stringliteral">&quot;nuclearNetwork::Network::Network() called with UNKNOWN format&quot;</span>);</div>
<div class="line"><a id="l00049" name="l00049"></a><span class="lineno"> 49</span> <a class="code hl_variable" href="classgridfire_1_1_network.html#a960d309defc570f92d296ce4b93920e5">m_logger</a>-&gt;flush_log();</div>
<div class="line"><a id="l00050" name="l00050"></a><span class="lineno"> 50</span> <span class="keywordflow">throw</span> std::runtime_error(<span class="stringliteral">&quot;nuclearNetwork::Network::Network() called with UNKNOWN format&quot;</span>);</div>
<div class="line"><a id="l00051" name="l00051"></a><span class="lineno"> 51</span> }</div>
<div class="line"><a id="l00052" name="l00052"></a><span class="lineno"> 52</span> }</div>
</div>
<div class="line"><a id="l00053" name="l00053"></a><span class="lineno"> 53</span> </div>
<div class="foldopen" id="foldopen00054" data-start="{" data-end="}">
<div class="line"><a id="l00054" name="l00054"></a><span class="lineno"><a class="line" href="classgridfire_1_1_network.html#a315a123499719178286b29e2aca69118"> 54</a></span> <a class="code hl_enumeration" href="namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37">NetworkFormat</a> <a class="code hl_function" href="classgridfire_1_1_network.html#a315a123499719178286b29e2aca69118">Network::getFormat</a>()<span class="keyword"> const </span>{</div>
<div class="line"><a id="l00055" name="l00055"></a><span class="lineno"> 55</span> <span class="keywordflow">return</span> <a class="code hl_variable" href="classgridfire_1_1_network.html#a37218e18f1bdbda7be94aa230f47dd18">m_format</a>;</div>
<div class="line"><a id="l00056" name="l00056"></a><span class="lineno"> 56</span> }</div>
</div>
<div class="line"><a id="l00057" name="l00057"></a><span class="lineno"> 57</span> </div>
<div class="foldopen" id="foldopen00058" data-start="{" data-end="}">
<div class="line"><a id="l00058" name="l00058"></a><span class="lineno"><a class="line" href="classgridfire_1_1_network.html#a787c601f6e4bd06600bf946efbcc98d4"> 58</a></span> <a class="code hl_enumeration" href="namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37">NetworkFormat</a> <a class="code hl_function" href="classgridfire_1_1_network.html#a787c601f6e4bd06600bf946efbcc98d4">Network::setFormat</a>(<span class="keyword">const</span> <a class="code hl_enumeration" href="namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37">NetworkFormat</a> format) {</div>
<div class="line"><a id="l00059" name="l00059"></a><span class="lineno"> 59</span> <span class="keyword">const</span> <a class="code hl_enumeration" href="namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37">NetworkFormat</a> oldFormat = <a class="code hl_variable" href="classgridfire_1_1_network.html#a37218e18f1bdbda7be94aa230f47dd18">m_format</a>;</div>
<div class="line"><a id="l00060" name="l00060"></a><span class="lineno"> 60</span> <a class="code hl_variable" href="classgridfire_1_1_network.html#a37218e18f1bdbda7be94aa230f47dd18">m_format</a> = format;</div>
<div class="line"><a id="l00061" name="l00061"></a><span class="lineno"> 61</span> <span class="keywordflow">return</span> oldFormat;</div>
<div class="line"><a id="l00062" name="l00062"></a><span class="lineno"> 62</span> }</div>
</div>
<div class="line"><a id="l00063" name="l00063"></a><span class="lineno"> 63</span> </div>
<div class="foldopen" id="foldopen00064" data-start="{" data-end="}">
<div class="line"><a id="l00064" name="l00064"></a><span class="lineno"><a class="line" href="namespacegridfire.html#aa77f83539d9ae90e3bf541309bd9c83a"> 64</a></span> <a class="code hl_class" href="classgridfire_1_1reaction_1_1_logical_reaction_set.html">reaction::LogicalReactionSet</a> <a class="code hl_function" href="namespacegridfire.html#aa77f83539d9ae90e3bf541309bd9c83a">build_reaclib_nuclear_network</a>(<span class="keyword">const</span> fourdst::composition::Composition &amp;composition, <span class="keywordtype">bool</span> reverse) {</div>
<div class="line"><a id="l00065" name="l00065"></a><span class="lineno"> 65</span> <span class="keyword">using namespace </span><a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a>;</div>
<div class="line"><a id="l00066" name="l00066"></a><span class="lineno"> 66</span> std::vector&lt;Reaction&gt; reaclibReactions;</div>
<div class="line"><a id="l00067" name="l00067"></a><span class="lineno"> 67</span> <span class="keyword">auto</span> logger = fourdst::logging::LogManager::getInstance().getLogger(<span class="stringliteral">&quot;log&quot;</span>);</div>
<div class="line"><a id="l00068" name="l00068"></a><span class="lineno"> 68</span> </div>
<div class="line"><a id="l00069" name="l00069"></a><span class="lineno"> 69</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span> &amp;<a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a>: <a class="code hl_function" href="namespacegridfire_1_1reaclib.html#a91c7971c9d0a2971b9a6fa4d841c761d">reaclib::get_all_reactions</a>()) {</div>
<div class="line"><a id="l00070" name="l00070"></a><span class="lineno"> 70</span> <span class="keywordflow">if</span> (<a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a>.is_reverse() != reverse) {</div>
<div class="line"><a id="l00071" name="l00071"></a><span class="lineno"> 71</span> <span class="keywordflow">continue</span>; <span class="comment">// Skip reactions that do not match the requested direction</span></div>
<div class="line"><a id="l00072" name="l00072"></a><span class="lineno"> 72</span> }</div>
<div class="line"><a id="l00073" name="l00073"></a><span class="lineno"> 73</span> <span class="keywordtype">bool</span> gotReaction = <span class="keyword">true</span>;</div>
<div class="line"><a id="l00074" name="l00074"></a><span class="lineno"> 74</span> <span class="keyword">const</span> <span class="keyword">auto</span>&amp; reactants = <a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a>.reactants();</div>
<div class="line"><a id="l00075" name="l00075"></a><span class="lineno"> 75</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>&amp; reactant : reactants) {</div>
<div class="line"><a id="l00076" name="l00076"></a><span class="lineno"> 76</span> <span class="keywordflow">if</span> (!composition.contains(reactant)) {</div>
<div class="line"><a id="l00077" name="l00077"></a><span class="lineno"> 77</span> gotReaction = <span class="keyword">false</span>;</div>
<div class="line"><a id="l00078" name="l00078"></a><span class="lineno"> 78</span> <span class="keywordflow">break</span>; <span class="comment">// If any reactant is not in the composition, skip this reaction</span></div>
<div class="line"><a id="l00079" name="l00079"></a><span class="lineno"> 79</span> }</div>
<div class="line"><a id="l00080" name="l00080"></a><span class="lineno"> 80</span> }</div>
<div class="line"><a id="l00081" name="l00081"></a><span class="lineno"> 81</span> <span class="keywordflow">if</span> (gotReaction) {</div>
<div class="line"><a id="l00082" name="l00082"></a><span class="lineno"> 82</span> LOG_TRACE_L3(logger, <span class="stringliteral">&quot;Adding reaction {} to REACLIB reaction set.&quot;</span>, <a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a>.peName());</div>
<div class="line"><a id="l00083" name="l00083"></a><span class="lineno"> 83</span> reaclibReactions.push_back(<a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a>);</div>
<div class="line"><a id="l00084" name="l00084"></a><span class="lineno"> 84</span> }</div>
<div class="line"><a id="l00085" name="l00085"></a><span class="lineno"> 85</span> }</div>
<div class="line"><a id="l00086" name="l00086"></a><span class="lineno"> 86</span> <span class="keyword">const</span> ReactionSet reactionSet(reaclibReactions);</div>
<div class="line"><a id="l00087" name="l00087"></a><span class="lineno"> 87</span> <span class="keywordflow">return</span> LogicalReactionSet(reactionSet);</div>
<div class="line"><a id="l00088" name="l00088"></a><span class="lineno"> 88</span> }</div>
</div>
<div class="line"><a id="l00089" name="l00089"></a><span class="lineno"> 89</span> </div>
<div class="line"><a id="l00090" name="l00090"></a><span class="lineno"> 90</span> <span class="comment">// Trim whitespace from both ends of a string</span></div>
<div class="foldopen" id="foldopen00091" data-start="{" data-end="}">
<div class="line"><a id="l00091" name="l00091"></a><span class="lineno"><a class="line" href="namespacegridfire.html#a8b245f261cd8d1711ae8d593b054cf98"> 91</a></span> std::string <a class="code hl_function" href="namespacegridfire.html#a8b245f261cd8d1711ae8d593b054cf98">trim_whitespace</a>(<span class="keyword">const</span> std::string&amp; str) {</div>
<div class="line"><a id="l00092" name="l00092"></a><span class="lineno"> 92</span> <span class="keyword">auto</span> startIt = str.begin();</div>
<div class="line"><a id="l00093" name="l00093"></a><span class="lineno"> 93</span> <span class="keyword">auto</span> endIt = str.end();</div>
<div class="line"><a id="l00094" name="l00094"></a><span class="lineno"> 94</span> </div>
<div class="line"><a id="l00095" name="l00095"></a><span class="lineno"> 95</span> <span class="keywordflow">while</span> (startIt != endIt &amp;&amp; std::isspace(<span class="keyword">static_cast&lt;</span><span class="keywordtype">unsigned</span> <span class="keywordtype">char</span><span class="keyword">&gt;</span>(*startIt))) {</div>
<div class="line"><a id="l00096" name="l00096"></a><span class="lineno"> 96</span> ++startIt;</div>
<div class="line"><a id="l00097" name="l00097"></a><span class="lineno"> 97</span> }</div>
<div class="line"><a id="l00098" name="l00098"></a><span class="lineno"> 98</span> <span class="keywordflow">if</span> (startIt == endIt) {</div>
<div class="line"><a id="l00099" name="l00099"></a><span class="lineno"> 99</span> <span class="keywordflow">return</span> <span class="stringliteral">&quot;&quot;</span>;</div>
<div class="line"><a id="l00100" name="l00100"></a><span class="lineno"> 100</span> }</div>
<div class="line"><a id="l00101" name="l00101"></a><span class="lineno"> 101</span> <span class="keyword">auto</span> ritr = std::find_if(str.rbegin(), std::string::const_reverse_iterator(startIt),</div>
<div class="line"><a id="l00102" name="l00102"></a><span class="lineno"> 102</span> [](<span class="keywordtype">unsigned</span> <span class="keywordtype">char</span> ch){ return !std::isspace(ch); });</div>
<div class="line"><a id="l00103" name="l00103"></a><span class="lineno"> 103</span> <span class="keywordflow">return</span> std::string(startIt, ritr.base());</div>
<div class="line"><a id="l00104" name="l00104"></a><span class="lineno"> 104</span> }</div>
</div>
<div class="line"><a id="l00105" name="l00105"></a><span class="lineno"> 105</span> </div>
<div class="line"><a id="l00106" name="l00106"></a><span class="lineno"> 106</span>}</div>
<div class="ttc" id="aclassgridfire_1_1_network_html_a0bb7c7be9a3c3212ef6dcbf26dcacb16"><div class="ttname"><a href="classgridfire_1_1_network.html#a0bb7c7be9a3c3212ef6dcbf26dcacb16">gridfire::Network::m_logManager</a></div><div class="ttdeci">fourdst::logging::LogManager &amp; m_logManager</div><div class="ttdoc">Log manager instance.</div><div class="ttdef"><b>Definition</b> <a href="network_8h_source.html#l00097">network.h:97</a></div></div>
<div class="ttc" id="aclassgridfire_1_1_network_html_a20b631f2404bfdec2333f680a62abf55"><div class="ttname"><a href="classgridfire_1_1_network.html#a20b631f2404bfdec2333f680a62abf55">gridfire::Network::Network</a></div><div class="ttdeci">Network(const NetworkFormat format=NetworkFormat::APPROX8)</div><div class="ttdef"><b>Definition</b> <a href="#l00041">network.cpp:41</a></div></div>
<div class="ttc" id="aclassgridfire_1_1_network_html_a315a123499719178286b29e2aca69118"><div class="ttname"><a href="classgridfire_1_1_network.html#a315a123499719178286b29e2aca69118">gridfire::Network::getFormat</a></div><div class="ttdeci">NetworkFormat getFormat() const</div><div class="ttdef"><b>Definition</b> <a href="#l00054">network.cpp:54</a></div></div>
<div class="ttc" id="aclassgridfire_1_1_network_html_a37218e18f1bdbda7be94aa230f47dd18"><div class="ttname"><a href="classgridfire_1_1_network.html#a37218e18f1bdbda7be94aa230f47dd18">gridfire::Network::m_format</a></div><div class="ttdeci">NetworkFormat m_format</div><div class="ttdoc">Format of the network.</div><div class="ttdef"><b>Definition</b> <a href="network_8h_source.html#l00100">network.h:100</a></div></div>
<div class="ttc" id="aclassgridfire_1_1_network_html_a787c601f6e4bd06600bf946efbcc98d4"><div class="ttname"><a href="classgridfire_1_1_network.html#a787c601f6e4bd06600bf946efbcc98d4">gridfire::Network::setFormat</a></div><div class="ttdeci">NetworkFormat setFormat(const NetworkFormat format)</div><div class="ttdef"><b>Definition</b> <a href="#l00058">network.cpp:58</a></div></div>
<div class="ttc" id="aclassgridfire_1_1_network_html_a960d309defc570f92d296ce4b93920e5"><div class="ttname"><a href="classgridfire_1_1_network.html#a960d309defc570f92d296ce4b93920e5">gridfire::Network::m_logger</a></div><div class="ttdeci">quill::Logger * m_logger</div><div class="ttdoc">Logger instance.</div><div class="ttdef"><b>Definition</b> <a href="network_8h_source.html#l00098">network.h:98</a></div></div>
<div class="ttc" id="aclassgridfire_1_1_network_html_a9f8802012728ef5fea0e8cd465044e09"><div class="ttname"><a href="classgridfire_1_1_network.html#a9f8802012728ef5fea0e8cd465044e09">gridfire::Network::m_config</a></div><div class="ttdeci">fourdst::config::Config &amp; m_config</div><div class="ttdoc">Configuration instance.</div><div class="ttdef"><b>Definition</b> <a href="network_8h_source.html#l00096">network.h:96</a></div></div>
<div class="ttc" id="aclassgridfire_1_1_network_html_adf7002883160101c9f9d1b376b265410"><div class="ttname"><a href="classgridfire_1_1_network.html#adf7002883160101c9f9d1b376b265410">gridfire::Network::m_constants</a></div><div class="ttdeci">fourdst::constant::Constants &amp; m_constants</div><div class="ttdef"><b>Definition</b> <a href="network_8h_source.html#l00101">network.h:101</a></div></div>
<div class="ttc" id="aclassgridfire_1_1reaction_1_1_logical_reaction_set_html"><div class="ttname"><a href="classgridfire_1_1reaction_1_1_logical_reaction_set.html">gridfire::reaction::LogicalReactionSet</a></div><div class="ttdoc">A collection of LogicalReaction objects.</div><div class="ttdef"><b>Definition</b> <a href="reaction_8h_source.html#l00554">reaction.h:554</a></div></div>
<div class="ttc" id="anamespacegridfire_1_1reaclib_html_a91c7971c9d0a2971b9a6fa4d841c761d"><div class="ttname"><a href="namespacegridfire_1_1reaclib.html#a91c7971c9d0a2971b9a6fa4d841c761d">gridfire::reaclib::get_all_reactions</a></div><div class="ttdeci">const reaction::LogicalReactionSet &amp; get_all_reactions()</div><div class="ttdoc">Provides global access to the fully initialized REACLIB reaction set.</div><div class="ttdef"><b>Definition</b> <a href="reaclib_8cpp_source.html#l00136">reaclib.cpp:136</a></div></div>
<div class="ttc" id="anamespacegridfire_1_1reaction_html"><div class="ttname"><a href="namespacegridfire_1_1reaction.html">gridfire::reaction</a></div><div class="ttdef"><b>Definition</b> <a href="reaction_8h_source.html#l00024">reaction.h:24</a></div></div>
<div class="ttc" id="anamespacegridfire_html"><div class="ttname"><a href="namespacegridfire.html">gridfire</a></div><div class="ttdef"><b>Definition</b> <a href="engine__abstract_8h_source.html#l00021">engine_abstract.h:21</a></div></div>
<div class="ttc" id="anamespacegridfire_html_a3f3d6b3f9742b70e62049ccefbb60f37"><div class="ttname"><a href="namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37">gridfire::NetworkFormat</a></div><div class="ttdeci">NetworkFormat</div><div class="ttdef"><b>Definition</b> <a href="network_8h_source.html#l00041">network.h:41</a></div></div>
<div class="ttc" id="anamespacegridfire_html_a3f3d6b3f9742b70e62049ccefbb60f37aac700abde5f6ff8b7328193eb19697b2"><div class="ttname"><a href="namespacegridfire.html#a3f3d6b3f9742b70e62049ccefbb60f37aac700abde5f6ff8b7328193eb19697b2">gridfire::UNKNOWN</a></div><div class="ttdeci">@ UNKNOWN</div><div class="ttdef"><b>Definition</b> <a href="network_8h_source.html#l00044">network.h:44</a></div></div>
<div class="ttc" id="anamespacegridfire_html_a8b245f261cd8d1711ae8d593b054cf98"><div class="ttname"><a href="namespacegridfire.html#a8b245f261cd8d1711ae8d593b054cf98">gridfire::trim_whitespace</a></div><div class="ttdeci">std::string trim_whitespace(const std::string &amp;str)</div><div class="ttdef"><b>Definition</b> <a href="#l00091">network.cpp:91</a></div></div>
<div class="ttc" id="anamespacegridfire_html_aa77f83539d9ae90e3bf541309bd9c83a"><div class="ttname"><a href="namespacegridfire.html#aa77f83539d9ae90e3bf541309bd9c83a">gridfire::build_reaclib_nuclear_network</a></div><div class="ttdeci">reaction::LogicalReactionSet build_reaclib_nuclear_network(const fourdst::composition::Composition &amp;composition, bool reverse)</div><div class="ttdef"><b>Definition</b> <a href="#l00064">network.cpp:64</a></div></div>
<div class="ttc" id="anetwork_8h_html"><div class="ttname"><a href="network_8h.html">network.h</a></div></div>
<div class="ttc" id="areaclib_8h_html"><div class="ttname"><a href="reaclib_8h.html">reaclib.h</a></div></div>
<div class="ttc" id="areaction_8h_html"><div class="ttname"><a href="reaction_8h.html">reaction.h</a></div><div class="ttdoc">Defines classes for representing and managing nuclear reactions.</div></div>
<div class="ttc" id="astructgridfire_1_1_net_in_html_a13058f4929e72c1187abbebcddb8aed1"><div class="ttname"><a href="structgridfire_1_1_net_in.html#a13058f4929e72c1187abbebcddb8aed1">gridfire::NetIn::composition</a></div><div class="ttdeci">fourdst::composition::Composition composition</div><div class="ttdoc">Composition of the network.</div><div class="ttdef"><b>Definition</b> <a href="network_8h_source.html#l00054">network.h:54</a></div></div>
<div class="ttc" id="astructgridfire_1_1_net_in_html_a47781e8d5503e3b4f12d669e2cbcfb65"><div class="ttname"><a href="structgridfire_1_1_net_in.html#a47781e8d5503e3b4f12d669e2cbcfb65">gridfire::NetIn::MolarAbundance</a></div><div class="ttdeci">std::vector&lt; double &gt; MolarAbundance() const</div><div class="ttdef"><b>Definition</b> <a href="#l00030">network.cpp:30</a></div></div>
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