170 lines
11 KiB
HTML
170 lines
11 KiB
HTML
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
|
|
<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
|
|
<head>
|
|
<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
|
|
<meta http-equiv="X-UA-Compatible" content="IE=11"/>
|
|
<meta name="generator" content="Doxygen 1.9.8"/>
|
|
<meta name="viewport" content="width=device-width, initial-scale=1"/>
|
|
<title>GridFire: src/include/gridfire/engine/types/jacobian.h File Reference</title>
|
|
<link href="tabs.css" rel="stylesheet" type="text/css"/>
|
|
<script type="text/javascript" src="jquery.js"></script>
|
|
<script type="text/javascript" src="dynsections.js"></script>
|
|
<link href="navtree.css" rel="stylesheet" type="text/css"/>
|
|
<script type="text/javascript" src="resize.js"></script>
|
|
<script type="text/javascript" src="navtreedata.js"></script>
|
|
<script type="text/javascript" src="navtree.js"></script>
|
|
<link href="search/search.css" rel="stylesheet" type="text/css"/>
|
|
<script type="text/javascript" src="search/searchdata.js"></script>
|
|
<script type="text/javascript" src="search/search.js"></script>
|
|
<link href="doxygen.css" rel="stylesheet" type="text/css" />
|
|
<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
|
|
<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
|
|
</head>
|
|
<body>
|
|
<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
|
|
<div id="titlearea">
|
|
<table cellspacing="0" cellpadding="0">
|
|
<tbody>
|
|
<tr id="projectrow">
|
|
<td id="projectalign">
|
|
<div id="projectname">GridFire<span id="projectnumber"> v0.7.1_rc2</span>
|
|
</div>
|
|
<div id="projectbrief">General Purpose Nuclear Network</div>
|
|
</td>
|
|
</tr>
|
|
</tbody>
|
|
</table>
|
|
</div>
|
|
<!-- end header part -->
|
|
<!-- Generated by Doxygen 1.9.8 -->
|
|
<script type="text/javascript">
|
|
/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&dn=expat.txt MIT */
|
|
var searchBox = new SearchBox("searchBox", "search/",'.html');
|
|
/* @license-end */
|
|
</script>
|
|
<script type="text/javascript" src="menudata.js"></script>
|
|
<script type="text/javascript" src="menu.js"></script>
|
|
<script type="text/javascript">
|
|
/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&dn=expat.txt MIT */
|
|
$(function() {
|
|
initMenu('',true,false,'search.php','Search');
|
|
$(document).ready(function() { init_search(); });
|
|
});
|
|
/* @license-end */
|
|
</script>
|
|
<div id="main-nav"></div>
|
|
</div><!-- top -->
|
|
<div id="side-nav" class="ui-resizable side-nav-resizable">
|
|
<div id="nav-tree">
|
|
<div id="nav-tree-contents">
|
|
<div id="nav-sync" class="sync"></div>
|
|
</div>
|
|
</div>
|
|
<div id="splitbar" style="-moz-user-select:none;"
|
|
class="ui-resizable-handle">
|
|
</div>
|
|
</div>
|
|
<script type="text/javascript">
|
|
/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&dn=expat.txt MIT */
|
|
$(document).ready(function(){initNavTree('jacobian_8h.html',''); initResizable(); });
|
|
/* @license-end */
|
|
</script>
|
|
<div id="doc-content">
|
|
<!-- window showing the filter options -->
|
|
<div id="MSearchSelectWindow"
|
|
onmouseover="return searchBox.OnSearchSelectShow()"
|
|
onmouseout="return searchBox.OnSearchSelectHide()"
|
|
onkeydown="return searchBox.OnSearchSelectKey(event)">
|
|
</div>
|
|
|
|
<!-- iframe showing the search results (closed by default) -->
|
|
<div id="MSearchResultsWindow">
|
|
<div id="MSearchResults">
|
|
<div class="SRPage">
|
|
<div id="SRIndex">
|
|
<div id="SRResults"></div>
|
|
<div class="SRStatus" id="Loading">Loading...</div>
|
|
<div class="SRStatus" id="Searching">Searching...</div>
|
|
<div class="SRStatus" id="NoMatches">No Matches</div>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
<div class="header">
|
|
<div class="summary">
|
|
<a href="#nested-classes">Classes</a> |
|
|
<a href="#namespaces">Namespaces</a> |
|
|
<a href="#typedef-members">Typedefs</a> |
|
|
<a href="#func-members">Functions</a> |
|
|
<a href="#var-members">Variables</a> </div>
|
|
<div class="headertitle"><div class="title">jacobian.h File Reference</div></div>
|
|
</div><!--header-->
|
|
<div class="contents">
|
|
|
|
<p>Wrapper for handling the network Jacobian matrix in GridFire. Currently uses Eigen's SparseMatrix.
|
|
<a href="#details">More...</a></p>
|
|
<div class="textblock"><code>#include "fourdst/atomic/atomicSpecies.h"</code><br />
|
|
<code>#include "fourdst/composition/composition_abstract.h"</code><br />
|
|
<code>#include "quill/Logger.h"</code><br />
|
|
<code>#include <Eigen/SparseCore></code><br />
|
|
<code>#include <tuple></code><br />
|
|
<code>#include <functional></code><br />
|
|
<code>#include <unordered_map></code><br />
|
|
<code>#include <optional></code><br />
|
|
</div><div class="textblock"><div class="dynheader">
|
|
Include dependency graph for jacobian.h:</div>
|
|
<div class="dyncontent">
|
|
<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="jacobian_8h__incl.svg" width="100%" height="405"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
|
|
</div>
|
|
</div><div class="textblock"><div class="dynheader">
|
|
This graph shows which files directly or indirectly include this file:</div>
|
|
<div class="dyncontent">
|
|
<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="jacobian_8h__dep__incl.svg" width="100%" height="600"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
|
|
</div>
|
|
</div><table class="memberdecls">
|
|
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="nested-classes" name="nested-classes"></a>
|
|
Classes</h2></td></tr>
|
|
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">gridfire::engine::NetworkJacobian</a></td></tr>
|
|
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A wrapper class for handling the network Jacobian matrix. <a href="classgridfire_1_1engine_1_1NetworkJacobian.html#details">More...</a><br /></td></tr>
|
|
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
|
|
</table><table class="memberdecls">
|
|
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="namespaces" name="namespaces"></a>
|
|
Namespaces</h2></td></tr>
|
|
<tr class="memitem:namespacegridfire" id="r_namespacegridfire"><td class="memItemLeft" align="right" valign="top">namespace  </td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html">gridfire</a></td></tr>
|
|
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
|
|
<tr class="memitem:namespacegridfire_1_1engine" id="r_namespacegridfire_1_1engine"><td class="memItemLeft" align="right" valign="top">namespace  </td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1engine.html">gridfire::engine</a></td></tr>
|
|
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
|
|
</table><table class="memberdecls">
|
|
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="typedef-members" name="typedef-members"></a>
|
|
Typedefs</h2></td></tr>
|
|
<tr class="memitem:ac7974616b5fd465c4a42e3d882cdde6e" id="r_ac7974616b5fd465c4a42e3d882cdde6e"><td class="memItemLeft" align="right" valign="top">using </td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1engine.html#ac7974616b5fd465c4a42e3d882cdde6e">gridfire::engine::JacobianEntry</a> = std::pair< std::pair< fourdst::atomic::Species, fourdst::atomic::Species >, double ></td></tr>
|
|
<tr class="memdesc:ac7974616b5fd465c4a42e3d882cdde6e"><td class="mdescLeft"> </td><td class="mdescRight">Represents an entry in the Jacobian matrix. <br /></td></tr>
|
|
<tr class="separator:ac7974616b5fd465c4a42e3d882cdde6e"><td class="memSeparator" colspan="2"> </td></tr>
|
|
</table><table class="memberdecls">
|
|
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="func-members" name="func-members"></a>
|
|
Functions</h2></td></tr>
|
|
<tr class="memitem:afacda3b01618f041a81fa516547564fa" id="r_afacda3b01618f041a81fa516547564fa"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1engine.html#afacda3b01618f041a81fa516547564fa">gridfire::engine::regularize_jacobian</a> (const <a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a> &jacobian, const fourdst::composition::CompositionAbstract &comp, std::optional< quill::Logger * > logger=std::nullopt)</td></tr>
|
|
<tr class="memdesc:afacda3b01618f041a81fa516547564fa"><td class="mdescLeft"> </td><td class="mdescRight">Regularizes the given Jacobian matrix based on the provided composition. <br /></td></tr>
|
|
<tr class="separator:afacda3b01618f041a81fa516547564fa"><td class="memSeparator" colspan="2"> </td></tr>
|
|
</table><table class="memberdecls">
|
|
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="var-members" name="var-members"></a>
|
|
Variables</h2></td></tr>
|
|
<tr class="memitem:ae769a7e049c0b79e58675103b21f918f" id="r_ae769a7e049c0b79e58675103b21f918f"><td class="memItemLeft" align="right" valign="top">constexpr double </td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1engine.html#ae769a7e049c0b79e58675103b21f918f">gridfire::engine::MIN_ABUNDANCE_TO_CONTRIBUTE_TO_JACOBIAN</a> = 1e-100</td></tr>
|
|
<tr class="memdesc:ae769a7e049c0b79e58675103b21f918f"><td class="mdescLeft"> </td><td class="mdescRight">Minimum abundance for a species to contribute to the Jacobian. <br /></td></tr>
|
|
<tr class="separator:ae769a7e049c0b79e58675103b21f918f"><td class="memSeparator" colspan="2"> </td></tr>
|
|
</table>
|
|
<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
|
|
<div class="textblock"><p>Wrapper for handling the network Jacobian matrix in GridFire. Currently uses Eigen's SparseMatrix. </p>
|
|
</div></div><!-- contents -->
|
|
</div><!-- doc-content -->
|
|
<!-- start footer part -->
|
|
<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
|
|
<ul>
|
|
<li class="navelem"><a class="el" href="dir_68267d1309a1af8e8297ef4c3efbcdba.html">src</a></li><li class="navelem"><a class="el" href="dir_b0856f6b0d80ccb263b2f415c91f9e17.html">include</a></li><li class="navelem"><a class="el" href="dir_3626e0c0e3c5d7812d6b277dfa4ec364.html">gridfire</a></li><li class="navelem"><a class="el" href="dir_aff155d61c3b73b9ab7dcdc908c4d49e.html">engine</a></li><li class="navelem"><a class="el" href="dir_80d0745b866022f2047f807b3376dff7.html">types</a></li><li class="navelem"><a class="el" href="jacobian_8h.html">jacobian.h</a></li>
|
|
<li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
|
|
</ul>
|
|
</div>
|
|
</body>
|
|
</html>
|