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docs(GridFire): added loads of docs and supressed yaml-cpp shadow warnings

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This commit is contained in:
Emily Boudreaux
2025-07-24 08:37:52 -04:00
parent f20bffc411
commit c3bc75a7f4
12 changed files with 1061 additions and 122 deletions
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47
src/lib/engine/views/engine_multiscale.cpp
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@@ -5,6 +5,7 @@
#include "fourdst/logging/logging.h"
#include <stdexcept>
#include <vector>
#include <unordered_map>
#include <unordered_set>
@@ -482,18 +483,7 @@ namespace gridfire {
// --- Step 5. Identify potential seed species for each candidate pool ---
LOG_TRACE_L1(m_logger, "Identifying potential seed species for candidate pools...");
const std::vector<QSEGroup> candidate_groups = constructCandidateGroups(connected_pools, Y, T9, rho);
LOG_TRACE_L1(
m_logger,
"Found {} candidate QSE groups for further analysis: {}",
candidate_groups.size(),
[&]() -> std::string {
std::stringstream ss;
for (const auto& group : candidate_groups) {
ss << group << " ";
}
return ss.str();
}()
);
LOG_TRACE_L1(m_logger, "Found {} candidate QSE groups for further analysis", candidate_groups.size());
LOG_TRACE_L1(m_logger, "Validating candidate groups with flux analysis...");
const std::vector<QSEGroup> validated_groups = validateGroupsWithFluxAnalysis(candidate_groups, Y, T9, rho);
@@ -1401,9 +1391,7 @@ namespace gridfire {
// Add clique
for (const size_t& u : intersection) {
const auto& uSpecies = m_baseEngine.getNetworkSpecies()[u];
for (const size_t& v : intersection) {
const auto & vSpecies = m_baseEngine.getNetworkSpecies()[v];
if (u != v) { // Avoid self-loops
connectivity_graph[u].push_back(v);
}
@@ -1623,4 +1611,35 @@ namespace gridfire {
return !(*this == other);
}
void MultiscalePartitioningEngineView::CacheStats::hit(const operators op) {
if (op == operators::All) {
throw std::invalid_argument("Cannot use 'ALL' as an operator for a hit");
}
m_hit ++;
m_operatorHits[op]++;
}
void MultiscalePartitioningEngineView::CacheStats::miss(const operators op) {
if (op == operators::All) {
throw std::invalid_argument("Cannot use 'ALL' as an operator for a miss");
}
m_miss ++;
m_operatorMisses[op]++;
}
size_t MultiscalePartitioningEngineView::CacheStats::hits(const operators op) const {
if (op == operators::All) {
return m_hit;
}
return m_operatorHits.at(op);
}
size_t MultiscalePartitioningEngineView::CacheStats::misses(const operators op) const {
if (op == operators::All) {
return m_miss;
}
return m_operatorMisses.at(op);
}
}