docs(docs): asdded and cleaned up docs
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<div id="projectname">GridFire<span id="projectnumber"> 0.0.1a</span>
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<div id="projectbrief">General Purpose Nuclear Network</div>
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<div class="headertitle"><div class="title">py_engine.cpp</div></div>
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<a href="py__engine_8cpp.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a id="l00001" name="l00001"></a><span class="lineno"> 1</span><span class="preprocessor">#include "<a class="code" href="py__engine_8h.html">py_engine.h</a>"</span></div>
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<div class="line"><a id="l00002" name="l00002"></a><span class="lineno"> 2</span> </div>
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<div class="line"><a id="l00003" name="l00003"></a><span class="lineno"> 3</span><span class="preprocessor">#include "<a class="code" href="engine_8h.html">gridfire/engine/engine.h</a>"</span></div>
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<div class="line"><a id="l00004" name="l00004"></a><span class="lineno"> 4</span> </div>
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<div class="line"><a id="l00005" name="l00005"></a><span class="lineno"> 5</span><span class="preprocessor">#include <pybind11/pybind11.h></span></div>
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<div class="line"><a id="l00006" name="l00006"></a><span class="lineno"> 6</span><span class="preprocessor">#include <pybind11/stl.h></span></div>
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<div class="line"><a id="l00007" name="l00007"></a><span class="lineno"> 7</span><span class="preprocessor">#include <pybind11/functional.h></span> <span class="comment">// Needed for std::function</span></div>
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<div class="line"><a id="l00008" name="l00008"></a><span class="lineno"> 8</span> </div>
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<div class="line"><a id="l00009" name="l00009"></a><span class="lineno"> 9</span><span class="preprocessor">#include <expected></span></div>
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<div class="line"><a id="l00010" name="l00010"></a><span class="lineno"> 10</span><span class="preprocessor">#include <unordered_map></span></div>
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<div class="line"><a id="l00011" name="l00011"></a><span class="lineno"> 11</span><span class="preprocessor">#include <vector></span></div>
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<div class="line"><a id="l00012" name="l00012"></a><span class="lineno"> 12</span> </div>
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<div class="line"><a id="l00013" name="l00013"></a><span class="lineno"> 13</span> </div>
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<div class="line"><a id="l00014" name="l00014"></a><span class="lineno"> 14</span><span class="keyword">namespace </span>py = pybind11;</div>
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<div class="line"><a id="l00015" name="l00015"></a><span class="lineno"> 15</span> </div>
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<div class="foldopen" id="foldopen00016" data-start="{" data-end="}">
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||||
<div class="line"><a id="l00016" name="l00016"></a><span class="lineno"><a class="line" href="class_py_engine.html#a2d240423899e039c2ca688e96f8af1f2"> 16</a></span><span class="keyword">const</span> std::vector<fourdst::atomic::Species>& <a class="code hl_function" href="class_py_engine.html#a2d240423899e039c2ca688e96f8af1f2">PyEngine::getNetworkSpecies</a>()<span class="keyword"> const </span>{</div>
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||||
<div class="line"><a id="l00017" name="l00017"></a><span class="lineno"> 17</span> <span class="comment">/*</span></div>
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||||
<div class="line"><a id="l00018" name="l00018"></a><span class="lineno"> 18</span><span class="comment"> * Acquire the GIL (Global Interpreter Lock) for thread safety</span></div>
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||||
<div class="line"><a id="l00019" name="l00019"></a><span class="lineno"> 19</span><span class="comment"> * with the Python interpreter.</span></div>
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<div class="line"><a id="l00020" name="l00020"></a><span class="lineno"> 20</span><span class="comment"> */</span></div>
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<div class="line"><a id="l00021" name="l00021"></a><span class="lineno"> 21</span> py::gil_scoped_acquire gil;</div>
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<div class="line"><a id="l00022" name="l00022"></a><span class="lineno"> 22</span> </div>
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<div class="line"><a id="l00023" name="l00023"></a><span class="lineno"> 23</span> <span class="comment">/*</span></div>
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||||
<div class="line"><a id="l00024" name="l00024"></a><span class="lineno"> 24</span><span class="comment"> * get_override() looks for a Python method that overrides this C++ one.</span></div>
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||||
<div class="line"><a id="l00025" name="l00025"></a><span class="lineno"> 25</span><span class="comment"> */</span></div>
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||||
<div class="line"><a id="l00026" name="l00026"></a><span class="lineno"> 26</span> py::function <span class="keyword">override</span> = py::get_override(<span class="keyword">this</span>, <span class="stringliteral">"getNetworkSpecies"</span>);</div>
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<div class="line"><a id="l00027" name="l00027"></a><span class="lineno"> 27</span> </div>
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<div class="line"><a id="l00028" name="l00028"></a><span class="lineno"> 28</span> <span class="keywordflow">if</span> (<span class="keyword">override</span>) {</div>
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<div class="line"><a id="l00029" name="l00029"></a><span class="lineno"> 29</span> py::object result = <span class="keyword">override</span>();</div>
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||||
<div class="line"><a id="l00030" name="l00030"></a><span class="lineno"> 30</span> <a class="code hl_variable" href="class_py_engine.html#a73caaa7606e2cdfd1aa82729a78ebb73">m_species_cache</a> = result.cast<std::vector<fourdst::atomic::Species>>();</div>
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||||
<div class="line"><a id="l00031" name="l00031"></a><span class="lineno"> 31</span> <span class="keywordflow">return</span> <a class="code hl_variable" href="class_py_engine.html#a73caaa7606e2cdfd1aa82729a78ebb73">m_species_cache</a>;</div>
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||||
<div class="line"><a id="l00032" name="l00032"></a><span class="lineno"> 32</span> }</div>
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||||
<div class="line"><a id="l00033" name="l00033"></a><span class="lineno"> 33</span> </div>
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||||
<div class="line"><a id="l00034" name="l00034"></a><span class="lineno"> 34</span> py::pybind11_fail(<span class="stringliteral">"Tried to call pure virtual function \"DynamicEngine::getNetworkSpecies\""</span>);</div>
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<div class="line"><a id="l00035" name="l00035"></a><span class="lineno"> 35</span>}</div>
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</div>
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<div class="line"><a id="l00036" name="l00036"></a><span class="lineno"> 36</span> </div>
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<div class="foldopen" id="foldopen00037" data-start="{" data-end="}">
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||||
<div class="line"><a id="l00037" name="l00037"></a><span class="lineno"><a class="line" href="class_py_engine.html#a2f92602ecf210414b46838fc0a9ae26d"> 37</a></span>std::expected<gridfire::StepDerivatives<double>, <a class="code hl_struct" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">gridfire::expectations::StaleEngineError</a>> <a class="code hl_function" href="class_py_engine.html#a2f92602ecf210414b46838fc0a9ae26d">PyEngine::calculateRHSAndEnergy</a>(<span class="keyword">const</span> std::vector<double> &Y, <span class="keywordtype">double</span> T9, <span class="keywordtype">double</span> rho)<span class="keyword"> const </span>{</div>
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||||
<div class="line"><a id="l00038" name="l00038"></a><span class="lineno"> 38</span> PYBIND11_OVERRIDE_PURE(</div>
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||||
<div class="line"><a id="l00039" name="l00039"></a><span class="lineno"> 39</span> PYBIND11_TYPE(std::expected<<a class="code hl_struct" href="structgridfire_1_1_step_derivatives.html">gridfire::StepDerivatives<double></a>, <a class="code hl_struct" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">gridfire::expectations::StaleEngineError</a>>),</div>
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||||
<div class="line"><a id="l00040" name="l00040"></a><span class="lineno"> 40</span> <a class="code hl_class" href="classgridfire_1_1_engine.html">gridfire::Engine</a>,</div>
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||||
<div class="line"><a id="l00041" name="l00041"></a><span class="lineno"> 41</span> <a class="code hl_function" href="class_py_engine.html#a2f92602ecf210414b46838fc0a9ae26d">calculateRHSAndEnergy</a>,</div>
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||||
<div class="line"><a id="l00042" name="l00042"></a><span class="lineno"> 42</span> Y, T9, rho</div>
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<div class="line"><a id="l00043" name="l00043"></a><span class="lineno"> 43</span> );</div>
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<div class="line"><a id="l00044" name="l00044"></a><span class="lineno"> 44</span>}</div>
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</div>
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<div class="line"><a id="l00045" name="l00045"></a><span class="lineno"> 45</span></div>
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<div class="line"><a id="l00049" name="l00049"></a><span class="lineno"> 49</span> </div>
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<div class="foldopen" id="foldopen00050" data-start="{" data-end="}">
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||||
<div class="line"><a id="l00050" name="l00050"></a><span class="lineno"><a class="line" href="class_py_dynamic_engine.html#afc745e7ab5da5d8b3cf916044515cd7d"> 50</a></span><span class="keyword">const</span> std::vector<fourdst::atomic::Species>& <a class="code hl_function" href="class_py_dynamic_engine.html#afc745e7ab5da5d8b3cf916044515cd7d">PyDynamicEngine::getNetworkSpecies</a>()<span class="keyword"> const </span>{</div>
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<div class="line"><a id="l00051" name="l00051"></a><span class="lineno"> 51</span> <span class="comment">/*</span></div>
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<div class="line"><a id="l00052" name="l00052"></a><span class="lineno"> 52</span><span class="comment"> * Acquire the GIL (Global Interpreter Lock) for thread safety</span></div>
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<div class="line"><a id="l00053" name="l00053"></a><span class="lineno"> 53</span><span class="comment"> * with the Python interpreter.</span></div>
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<div class="line"><a id="l00054" name="l00054"></a><span class="lineno"> 54</span><span class="comment"> */</span></div>
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<div class="line"><a id="l00055" name="l00055"></a><span class="lineno"> 55</span> py::gil_scoped_acquire gil;</div>
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<div class="line"><a id="l00056" name="l00056"></a><span class="lineno"> 56</span> </div>
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||||
<div class="line"><a id="l00057" name="l00057"></a><span class="lineno"> 57</span> <span class="comment">/*</span></div>
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<div class="line"><a id="l00058" name="l00058"></a><span class="lineno"> 58</span><span class="comment"> * get_override() looks for a Python method that overrides this C++ one.</span></div>
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<div class="line"><a id="l00059" name="l00059"></a><span class="lineno"> 59</span><span class="comment"> */</span></div>
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<div class="line"><a id="l00060" name="l00060"></a><span class="lineno"> 60</span> py::function <span class="keyword">override</span> = py::get_override(<span class="keyword">this</span>, <span class="stringliteral">"getNetworkSpecies"</span>);</div>
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<div class="line"><a id="l00061" name="l00061"></a><span class="lineno"> 61</span> </div>
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<div class="line"><a id="l00062" name="l00062"></a><span class="lineno"> 62</span> <span class="keywordflow">if</span> (<span class="keyword">override</span>) {</div>
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<div class="line"><a id="l00063" name="l00063"></a><span class="lineno"> 63</span> py::object result = <span class="keyword">override</span>();</div>
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<div class="line"><a id="l00064" name="l00064"></a><span class="lineno"> 64</span> <a class="code hl_variable" href="class_py_dynamic_engine.html#a2246382b1c98ba69cdb419bba63a6d03">m_species_cache</a> = result.cast<std::vector<fourdst::atomic::Species>>();</div>
|
||||
<div class="line"><a id="l00065" name="l00065"></a><span class="lineno"> 65</span> <span class="keywordflow">return</span> <a class="code hl_variable" href="class_py_dynamic_engine.html#a2246382b1c98ba69cdb419bba63a6d03">m_species_cache</a>;</div>
|
||||
<div class="line"><a id="l00066" name="l00066"></a><span class="lineno"> 66</span> }</div>
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||||
<div class="line"><a id="l00067" name="l00067"></a><span class="lineno"> 67</span> </div>
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||||
<div class="line"><a id="l00068" name="l00068"></a><span class="lineno"> 68</span> py::pybind11_fail(<span class="stringliteral">"Tried to call pure virtual function \"DynamicEngine::getNetworkSpecies\""</span>);</div>
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<div class="line"><a id="l00069" name="l00069"></a><span class="lineno"> 69</span>}</div>
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</div>
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||||
<div class="foldopen" id="foldopen00070" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00070" name="l00070"></a><span class="lineno"><a class="line" href="class_py_dynamic_engine.html#a5b7f0cfe327c634ec125303256de8b9a"> 70</a></span>std::expected<gridfire::StepDerivatives<double>, <a class="code hl_struct" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">gridfire::expectations::StaleEngineError</a>> <a class="code hl_function" href="class_py_dynamic_engine.html#a5b7f0cfe327c634ec125303256de8b9a">PyDynamicEngine::calculateRHSAndEnergy</a>(<span class="keyword">const</span> std::vector<double> &Y, <span class="keywordtype">double</span> T9, <span class="keywordtype">double</span> rho)<span class="keyword"> const </span>{</div>
|
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<div class="line"><a id="l00071" name="l00071"></a><span class="lineno"> 71</span> PYBIND11_OVERRIDE_PURE(</div>
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||||
<div class="line"><a id="l00072" name="l00072"></a><span class="lineno"> 72</span> PYBIND11_TYPE(std::expected<<a class="code hl_struct" href="structgridfire_1_1_step_derivatives.html">gridfire::StepDerivatives<double></a>, <a class="code hl_struct" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">gridfire::expectations::StaleEngineError</a>>),</div>
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||||
<div class="line"><a id="l00073" name="l00073"></a><span class="lineno"> 73</span> <a class="code hl_class" href="classgridfire_1_1_engine.html">gridfire::Engine</a>,</div>
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||||
<div class="line"><a id="l00074" name="l00074"></a><span class="lineno"> 74</span> <a class="code hl_function" href="class_py_dynamic_engine.html#a5b7f0cfe327c634ec125303256de8b9a">calculateRHSAndEnergy</a>,</div>
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||||
<div class="line"><a id="l00075" name="l00075"></a><span class="lineno"> 75</span> Y, T9, rho</div>
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<div class="line"><a id="l00076" name="l00076"></a><span class="lineno"> 76</span> );</div>
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<div class="line"><a id="l00077" name="l00077"></a><span class="lineno"> 77</span>}</div>
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</div>
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<div class="line"><a id="l00078" name="l00078"></a><span class="lineno"> 78</span> </div>
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||||
<div class="foldopen" id="foldopen00079" data-start="{" data-end="}">
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||||
<div class="line"><a id="l00079" name="l00079"></a><span class="lineno"><a class="line" href="class_py_dynamic_engine.html#a5bd40c752db1badcd600797c9113121d"> 79</a></span><span class="keywordtype">void</span> <a class="code hl_function" href="class_py_dynamic_engine.html#a5bd40c752db1badcd600797c9113121d">PyDynamicEngine::generateJacobianMatrix</a>(<span class="keyword">const</span> std::vector<double> &Y_dynamic, <span class="keywordtype">double</span> T9, <span class="keywordtype">double</span> rho)<span class="keyword"> const </span>{</div>
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<div class="line"><a id="l00080" name="l00080"></a><span class="lineno"> 80</span> PYBIND11_OVERRIDE_PURE(</div>
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||||
<div class="line"><a id="l00081" name="l00081"></a><span class="lineno"> 81</span> <span class="keywordtype">void</span>,</div>
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<div class="line"><a id="l00082" name="l00082"></a><span class="lineno"> 82</span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a>,</div>
|
||||
<div class="line"><a id="l00083" name="l00083"></a><span class="lineno"> 83</span> <a class="code hl_function" href="class_py_dynamic_engine.html#a5bd40c752db1badcd600797c9113121d">generateJacobianMatrix</a>,</div>
|
||||
<div class="line"><a id="l00084" name="l00084"></a><span class="lineno"> 84</span> Y_dynamic, T9, rho</div>
|
||||
<div class="line"><a id="l00085" name="l00085"></a><span class="lineno"> 85</span> );</div>
|
||||
<div class="line"><a id="l00086" name="l00086"></a><span class="lineno"> 86</span>}</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00087" name="l00087"></a><span class="lineno"> 87</span> </div>
|
||||
<div class="foldopen" id="foldopen00088" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00088" name="l00088"></a><span class="lineno"><a class="line" href="class_py_dynamic_engine.html#aa0f1fd3f0c0185395193d1b6897d64c5"> 88</a></span><span class="keywordtype">void</span> <a class="code hl_function" href="class_py_dynamic_engine.html#a5bd40c752db1badcd600797c9113121d">PyDynamicEngine::generateJacobianMatrix</a>(<span class="keyword">const</span> std::vector<double> &Y_dynamic, <span class="keywordtype">double</span> T9, <span class="keywordtype">double</span> rho, <span class="keyword">const</span> <a class="code hl_typedef" href="namespacegridfire.html#a898dfe22579e649935645cbd6f073178">gridfire::SparsityPattern</a> &sparsityPattern)<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00089" name="l00089"></a><span class="lineno"> 89</span> PYBIND11_OVERRIDE_PURE(</div>
|
||||
<div class="line"><a id="l00090" name="l00090"></a><span class="lineno"> 90</span> <span class="keywordtype">void</span>,</div>
|
||||
<div class="line"><a id="l00091" name="l00091"></a><span class="lineno"> 91</span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a>,</div>
|
||||
<div class="line"><a id="l00092" name="l00092"></a><span class="lineno"> 92</span> <a class="code hl_function" href="class_py_dynamic_engine.html#a5bd40c752db1badcd600797c9113121d">generateJacobianMatrix</a>,</div>
|
||||
<div class="line"><a id="l00093" name="l00093"></a><span class="lineno"> 93</span> Y_dynamic, T9, rho, sparsityPattern</div>
|
||||
<div class="line"><a id="l00094" name="l00094"></a><span class="lineno"> 94</span> );</div>
|
||||
<div class="line"><a id="l00095" name="l00095"></a><span class="lineno"> 95</span>}</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00096" name="l00096"></a><span class="lineno"> 96</span> </div>
|
||||
<div class="foldopen" id="foldopen00097" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00097" name="l00097"></a><span class="lineno"><a class="line" href="class_py_dynamic_engine.html#a1c888bbc0618f1ae02d9a53e45f3c159"> 97</a></span><span class="keywordtype">double</span> <a class="code hl_function" href="class_py_dynamic_engine.html#a1c888bbc0618f1ae02d9a53e45f3c159">PyDynamicEngine::getJacobianMatrixEntry</a>(<span class="keywordtype">int</span> i, <span class="keywordtype">int</span> j)<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00098" name="l00098"></a><span class="lineno"> 98</span> PYBIND11_OVERRIDE_PURE(</div>
|
||||
<div class="line"><a id="l00099" name="l00099"></a><span class="lineno"> 99</span> <span class="keywordtype">double</span>,</div>
|
||||
<div class="line"><a id="l00100" name="l00100"></a><span class="lineno"> 100</span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a>,</div>
|
||||
<div class="line"><a id="l00101" name="l00101"></a><span class="lineno"> 101</span> <a class="code hl_function" href="class_py_dynamic_engine.html#a1c888bbc0618f1ae02d9a53e45f3c159">getJacobianMatrixEntry</a>,</div>
|
||||
<div class="line"><a id="l00102" name="l00102"></a><span class="lineno"> 102</span> i, j</div>
|
||||
<div class="line"><a id="l00103" name="l00103"></a><span class="lineno"> 103</span> );</div>
|
||||
<div class="line"><a id="l00104" name="l00104"></a><span class="lineno"> 104</span>}</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00105" name="l00105"></a><span class="lineno"> 105</span> </div>
|
||||
<div class="foldopen" id="foldopen00106" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00106" name="l00106"></a><span class="lineno"><a class="line" href="class_py_dynamic_engine.html#a2066649ca11a869c054079ea12d8d0e9"> 106</a></span><span class="keywordtype">void</span> <a class="code hl_function" href="class_py_dynamic_engine.html#a2066649ca11a869c054079ea12d8d0e9">PyDynamicEngine::generateStoichiometryMatrix</a>() {</div>
|
||||
<div class="line"><a id="l00107" name="l00107"></a><span class="lineno"> 107</span> PYBIND11_OVERRIDE_PURE(</div>
|
||||
<div class="line"><a id="l00108" name="l00108"></a><span class="lineno"> 108</span> <span class="keywordtype">void</span>,</div>
|
||||
<div class="line"><a id="l00109" name="l00109"></a><span class="lineno"> 109</span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a>,</div>
|
||||
<div class="line"><a id="l00110" name="l00110"></a><span class="lineno"> 110</span> <a class="code hl_function" href="class_py_dynamic_engine.html#a2066649ca11a869c054079ea12d8d0e9">generateStoichiometryMatrix</a></div>
|
||||
<div class="line"><a id="l00111" name="l00111"></a><span class="lineno"> 111</span> );</div>
|
||||
<div class="line"><a id="l00112" name="l00112"></a><span class="lineno"> 112</span>}</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00113" name="l00113"></a><span class="lineno"> 113</span> </div>
|
||||
<div class="foldopen" id="foldopen00114" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00114" name="l00114"></a><span class="lineno"><a class="line" href="class_py_dynamic_engine.html#ab48ef6db18da20024aa563a91fa16f83"> 114</a></span><span class="keywordtype">int</span> <a class="code hl_function" href="class_py_dynamic_engine.html#ab48ef6db18da20024aa563a91fa16f83">PyDynamicEngine::getStoichiometryMatrixEntry</a>(<span class="keywordtype">int</span> speciesIndex, <span class="keywordtype">int</span> reactionIndex)<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00115" name="l00115"></a><span class="lineno"> 115</span> PYBIND11_OVERRIDE_PURE(</div>
|
||||
<div class="line"><a id="l00116" name="l00116"></a><span class="lineno"> 116</span> <span class="keywordtype">int</span>,</div>
|
||||
<div class="line"><a id="l00117" name="l00117"></a><span class="lineno"> 117</span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a>,</div>
|
||||
<div class="line"><a id="l00118" name="l00118"></a><span class="lineno"> 118</span> <a class="code hl_function" href="class_py_dynamic_engine.html#ab48ef6db18da20024aa563a91fa16f83">getStoichiometryMatrixEntry</a>,</div>
|
||||
<div class="line"><a id="l00119" name="l00119"></a><span class="lineno"> 119</span> speciesIndex, reactionIndex</div>
|
||||
<div class="line"><a id="l00120" name="l00120"></a><span class="lineno"> 120</span> );</div>
|
||||
<div class="line"><a id="l00121" name="l00121"></a><span class="lineno"> 121</span>}</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00122" name="l00122"></a><span class="lineno"> 122</span> </div>
|
||||
<div class="foldopen" id="foldopen00123" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00123" name="l00123"></a><span class="lineno"><a class="line" href="class_py_dynamic_engine.html#a6224f546ba66b1257506b1fc9f47195a"> 123</a></span><span class="keywordtype">double</span> <a class="code hl_function" href="class_py_dynamic_engine.html#a6224f546ba66b1257506b1fc9f47195a">PyDynamicEngine::calculateMolarReactionFlow</a>(<span class="keyword">const</span> <a class="code hl_class" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a> &reaction, <span class="keyword">const</span> std::vector<double> &Y, <span class="keywordtype">double</span> T9, <span class="keywordtype">double</span> rho)<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00124" name="l00124"></a><span class="lineno"> 124</span> PYBIND11_OVERRIDE_PURE(</div>
|
||||
<div class="line"><a id="l00125" name="l00125"></a><span class="lineno"> 125</span> <span class="keywordtype">double</span>,</div>
|
||||
<div class="line"><a id="l00126" name="l00126"></a><span class="lineno"> 126</span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a>,</div>
|
||||
<div class="line"><a id="l00127" name="l00127"></a><span class="lineno"> 127</span> <a class="code hl_function" href="class_py_dynamic_engine.html#a6224f546ba66b1257506b1fc9f47195a">calculateMolarReactionFlow</a>,</div>
|
||||
<div class="line"><a id="l00128" name="l00128"></a><span class="lineno"> 128</span> reaction, Y, T9, rho</div>
|
||||
<div class="line"><a id="l00129" name="l00129"></a><span class="lineno"> 129</span> );</div>
|
||||
<div class="line"><a id="l00130" name="l00130"></a><span class="lineno"> 130</span>}</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00131" name="l00131"></a><span class="lineno"> 131</span> </div>
|
||||
<div class="foldopen" id="foldopen00132" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00132" name="l00132"></a><span class="lineno"><a class="line" href="class_py_dynamic_engine.html#a5988cfba247631ba6c00795cafda9a38"> 132</a></span><span class="keyword">const</span> <a class="code hl_typedef" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">gridfire::reaction::LogicalReactionSet</a>& <a class="code hl_function" href="class_py_dynamic_engine.html#a5988cfba247631ba6c00795cafda9a38">PyDynamicEngine::getNetworkReactions</a>()<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00133" name="l00133"></a><span class="lineno"> 133</span> PYBIND11_OVERRIDE_PURE(</div>
|
||||
<div class="line"><a id="l00134" name="l00134"></a><span class="lineno"> 134</span> <span class="keyword">const</span> <a class="code hl_typedef" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">gridfire::reaction::LogicalReactionSet</a>&,</div>
|
||||
<div class="line"><a id="l00135" name="l00135"></a><span class="lineno"> 135</span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a>,</div>
|
||||
<div class="line"><a id="l00136" name="l00136"></a><span class="lineno"> 136</span> <a class="code hl_function" href="class_py_dynamic_engine.html#a5988cfba247631ba6c00795cafda9a38">getNetworkReactions</a></div>
|
||||
<div class="line"><a id="l00137" name="l00137"></a><span class="lineno"> 137</span> );</div>
|
||||
<div class="line"><a id="l00138" name="l00138"></a><span class="lineno"> 138</span>}</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00139" name="l00139"></a><span class="lineno"> 139</span> </div>
|
||||
<div class="foldopen" id="foldopen00140" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00140" name="l00140"></a><span class="lineno"><a class="line" href="class_py_dynamic_engine.html#afd818c408c64d207e71b1a90426328d6"> 140</a></span><span class="keywordtype">void</span> <a class="code hl_function" href="class_py_dynamic_engine.html#afd818c408c64d207e71b1a90426328d6">PyDynamicEngine::setNetworkReactions</a>(<span class="keyword">const</span> <a class="code hl_typedef" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">gridfire::reaction::LogicalReactionSet</a>& reactions) {</div>
|
||||
<div class="line"><a id="l00141" name="l00141"></a><span class="lineno"> 141</span> PYBIND11_OVERRIDE_PURE(</div>
|
||||
<div class="line"><a id="l00142" name="l00142"></a><span class="lineno"> 142</span> <span class="keywordtype">void</span>,</div>
|
||||
<div class="line"><a id="l00143" name="l00143"></a><span class="lineno"> 143</span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a>,</div>
|
||||
<div class="line"><a id="l00144" name="l00144"></a><span class="lineno"> 144</span> <a class="code hl_function" href="class_py_dynamic_engine.html#afd818c408c64d207e71b1a90426328d6">setNetworkReactions</a>,</div>
|
||||
<div class="line"><a id="l00145" name="l00145"></a><span class="lineno"> 145</span> reactions</div>
|
||||
<div class="line"><a id="l00146" name="l00146"></a><span class="lineno"> 146</span> );</div>
|
||||
<div class="line"><a id="l00147" name="l00147"></a><span class="lineno"> 147</span>}</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00148" name="l00148"></a><span class="lineno"> 148</span> </div>
|
||||
<div class="foldopen" id="foldopen00149" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00149" name="l00149"></a><span class="lineno"><a class="line" href="class_py_dynamic_engine.html#a02a4c86c9637a3c9c9ca8ddd82ecff22"> 149</a></span>std::expected<std::unordered_map<fourdst::atomic::Species, double>, <a class="code hl_struct" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">gridfire::expectations::StaleEngineError</a>> <a class="code hl_function" href="class_py_dynamic_engine.html#a02a4c86c9637a3c9c9ca8ddd82ecff22">PyDynamicEngine::getSpeciesTimescales</a>(<span class="keyword">const</span> std::vector<double> &Y, <span class="keywordtype">double</span> T9, <span class="keywordtype">double</span> rho)<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00150" name="l00150"></a><span class="lineno"> 150</span> PYBIND11_OVERRIDE_PURE(</div>
|
||||
<div class="line"><a id="l00151" name="l00151"></a><span class="lineno"> 151</span> PYBIND11_TYPE(std::expected<std::unordered_map<fourdst::atomic::Species, double>, <a class="code hl_struct" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">gridfire::expectations::StaleEngineError</a>>),</div>
|
||||
<div class="line"><a id="l00152" name="l00152"></a><span class="lineno"> 152</span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a>,</div>
|
||||
<div class="line"><a id="l00153" name="l00153"></a><span class="lineno"> 153</span> <a class="code hl_function" href="class_py_dynamic_engine.html#a02a4c86c9637a3c9c9ca8ddd82ecff22">getSpeciesTimescales</a>,</div>
|
||||
<div class="line"><a id="l00154" name="l00154"></a><span class="lineno"> 154</span> Y, T9, rho</div>
|
||||
<div class="line"><a id="l00155" name="l00155"></a><span class="lineno"> 155</span> );</div>
|
||||
<div class="line"><a id="l00156" name="l00156"></a><span class="lineno"> 156</span>}</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00157" name="l00157"></a><span class="lineno"> 157</span> </div>
|
||||
<div class="foldopen" id="foldopen00158" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00158" name="l00158"></a><span class="lineno"><a class="line" href="class_py_dynamic_engine.html#a020044829e0146427ed4830e5b02c4f3"> 158</a></span>std::expected<std::unordered_map<fourdst::atomic::Species, double>, <a class="code hl_struct" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">gridfire::expectations::StaleEngineError</a>> <a class="code hl_function" href="class_py_dynamic_engine.html#a020044829e0146427ed4830e5b02c4f3">PyDynamicEngine::getSpeciesDestructionTimescales</a>(<span class="keyword">const</span> std::vector<double> &Y, <span class="keywordtype">double</span> T9, <span class="keywordtype">double</span> rho)<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00159" name="l00159"></a><span class="lineno"> 159</span> PYBIND11_OVERRIDE_PURE(</div>
|
||||
<div class="line"><a id="l00160" name="l00160"></a><span class="lineno"> 160</span> PYBIND11_TYPE(std::expected<std::unordered_map<fourdst::atomic::Species, double>, <a class="code hl_struct" href="structgridfire_1_1expectations_1_1_stale_engine_error.html">gridfire::expectations::StaleEngineError</a>>),</div>
|
||||
<div class="line"><a id="l00161" name="l00161"></a><span class="lineno"> 161</span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a>,</div>
|
||||
<div class="line"><a id="l00162" name="l00162"></a><span class="lineno"> 162</span> <a class="code hl_function" href="class_py_dynamic_engine.html#a020044829e0146427ed4830e5b02c4f3">getSpeciesDestructionTimescales</a>,</div>
|
||||
<div class="line"><a id="l00163" name="l00163"></a><span class="lineno"> 163</span> Y, T9, rho</div>
|
||||
<div class="line"><a id="l00164" name="l00164"></a><span class="lineno"> 164</span> );</div>
|
||||
<div class="line"><a id="l00165" name="l00165"></a><span class="lineno"> 165</span>}</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00166" name="l00166"></a><span class="lineno"> 166</span> </div>
|
||||
<div class="foldopen" id="foldopen00167" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00167" name="l00167"></a><span class="lineno"><a class="line" href="class_py_dynamic_engine.html#af8e6a8cd44f278535d7bcc9a896d6da8"> 167</a></span>fourdst::composition::Composition <a class="code hl_function" href="class_py_dynamic_engine.html#af8e6a8cd44f278535d7bcc9a896d6da8">PyDynamicEngine::update</a>(<span class="keyword">const</span> <a class="code hl_struct" href="structgridfire_1_1_net_in.html">gridfire::NetIn</a> &netIn) {</div>
|
||||
<div class="line"><a id="l00168" name="l00168"></a><span class="lineno"> 168</span> PYBIND11_OVERRIDE_PURE(</div>
|
||||
<div class="line"><a id="l00169" name="l00169"></a><span class="lineno"> 169</span> fourdst::composition::Composition,</div>
|
||||
<div class="line"><a id="l00170" name="l00170"></a><span class="lineno"> 170</span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a>,</div>
|
||||
<div class="line"><a id="l00171" name="l00171"></a><span class="lineno"> 171</span> <a class="code hl_function" href="class_py_dynamic_engine.html#af8e6a8cd44f278535d7bcc9a896d6da8">update</a>,</div>
|
||||
<div class="line"><a id="l00172" name="l00172"></a><span class="lineno"> 172</span> netIn</div>
|
||||
<div class="line"><a id="l00173" name="l00173"></a><span class="lineno"> 173</span> );</div>
|
||||
<div class="line"><a id="l00174" name="l00174"></a><span class="lineno"> 174</span>}</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00175" name="l00175"></a><span class="lineno"> 175</span> </div>
|
||||
<div class="foldopen" id="foldopen00176" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00176" name="l00176"></a><span class="lineno"><a class="line" href="class_py_dynamic_engine.html#a55bf19ed7534a312a36faf74753f7b14"> 176</a></span><span class="keywordtype">bool</span> <a class="code hl_function" href="class_py_dynamic_engine.html#a55bf19ed7534a312a36faf74753f7b14">PyDynamicEngine::isStale</a>(<span class="keyword">const</span> <a class="code hl_struct" href="structgridfire_1_1_net_in.html">gridfire::NetIn</a> &netIn) {</div>
|
||||
<div class="line"><a id="l00177" name="l00177"></a><span class="lineno"> 177</span> PYBIND11_OVERRIDE_PURE(</div>
|
||||
<div class="line"><a id="l00178" name="l00178"></a><span class="lineno"> 178</span> <span class="keywordtype">bool</span>,</div>
|
||||
<div class="line"><a id="l00179" name="l00179"></a><span class="lineno"> 179</span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a>,</div>
|
||||
<div class="line"><a id="l00180" name="l00180"></a><span class="lineno"> 180</span> <a class="code hl_function" href="class_py_dynamic_engine.html#a55bf19ed7534a312a36faf74753f7b14">isStale</a>,</div>
|
||||
<div class="line"><a id="l00181" name="l00181"></a><span class="lineno"> 181</span> netIn</div>
|
||||
<div class="line"><a id="l00182" name="l00182"></a><span class="lineno"> 182</span> );</div>
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<div class="line"><a id="l00183" name="l00183"></a><span class="lineno"> 183</span>}</div>
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<div class="line"><a id="l00184" name="l00184"></a><span class="lineno"> 184</span> </div>
|
||||
<div class="foldopen" id="foldopen00185" data-start="{" data-end="}">
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<div class="line"><a id="l00185" name="l00185"></a><span class="lineno"><a class="line" href="class_py_dynamic_engine.html#afa3abfd612033336a656f092721c14ac"> 185</a></span><span class="keywordtype">void</span> <a class="code hl_function" href="class_py_dynamic_engine.html#afa3abfd612033336a656f092721c14ac">PyDynamicEngine::setScreeningModel</a>(<a class="code hl_enumeration" href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">gridfire::screening::ScreeningType</a> model) {</div>
|
||||
<div class="line"><a id="l00186" name="l00186"></a><span class="lineno"> 186</span> PYBIND11_OVERRIDE_PURE(</div>
|
||||
<div class="line"><a id="l00187" name="l00187"></a><span class="lineno"> 187</span> <span class="keywordtype">void</span>,</div>
|
||||
<div class="line"><a id="l00188" name="l00188"></a><span class="lineno"> 188</span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a>,</div>
|
||||
<div class="line"><a id="l00189" name="l00189"></a><span class="lineno"> 189</span> <a class="code hl_function" href="class_py_dynamic_engine.html#afa3abfd612033336a656f092721c14ac">setScreeningModel</a>,</div>
|
||||
<div class="line"><a id="l00190" name="l00190"></a><span class="lineno"> 190</span> model</div>
|
||||
<div class="line"><a id="l00191" name="l00191"></a><span class="lineno"> 191</span> );</div>
|
||||
<div class="line"><a id="l00192" name="l00192"></a><span class="lineno"> 192</span>}</div>
|
||||
</div>
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<div class="line"><a id="l00193" name="l00193"></a><span class="lineno"> 193</span> </div>
|
||||
<div class="foldopen" id="foldopen00194" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00194" name="l00194"></a><span class="lineno"><a class="line" href="class_py_dynamic_engine.html#ab4cfdca5e15957c5cef75ffa6dedeee5"> 194</a></span><a class="code hl_enumeration" href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">gridfire::screening::ScreeningType</a> <a class="code hl_function" href="class_py_dynamic_engine.html#ab4cfdca5e15957c5cef75ffa6dedeee5">PyDynamicEngine::getScreeningModel</a>()<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00195" name="l00195"></a><span class="lineno"> 195</span> PYBIND11_OVERRIDE_PURE(</div>
|
||||
<div class="line"><a id="l00196" name="l00196"></a><span class="lineno"> 196</span> <a class="code hl_enumeration" href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">gridfire::screening::ScreeningType</a>,</div>
|
||||
<div class="line"><a id="l00197" name="l00197"></a><span class="lineno"> 197</span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a>,</div>
|
||||
<div class="line"><a id="l00198" name="l00198"></a><span class="lineno"> 198</span> <a class="code hl_function" href="class_py_dynamic_engine.html#ab4cfdca5e15957c5cef75ffa6dedeee5">getScreeningModel</a></div>
|
||||
<div class="line"><a id="l00199" name="l00199"></a><span class="lineno"> 199</span> );</div>
|
||||
<div class="line"><a id="l00200" name="l00200"></a><span class="lineno"> 200</span>}</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00201" name="l00201"></a><span class="lineno"> 201</span> </div>
|
||||
<div class="foldopen" id="foldopen00202" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00202" name="l00202"></a><span class="lineno"><a class="line" href="class_py_dynamic_engine.html#a2ee1d745c1c21b9fcb652c96c42f1091"> 202</a></span><span class="keywordtype">int</span> <a class="code hl_function" href="class_py_dynamic_engine.html#a2ee1d745c1c21b9fcb652c96c42f1091">PyDynamicEngine::getSpeciesIndex</a>(<span class="keyword">const</span> fourdst::atomic::Species &species)<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00203" name="l00203"></a><span class="lineno"> 203</span> PYBIND11_OVERRIDE_PURE(</div>
|
||||
<div class="line"><a id="l00204" name="l00204"></a><span class="lineno"> 204</span> <span class="keywordtype">int</span>,</div>
|
||||
<div class="line"><a id="l00205" name="l00205"></a><span class="lineno"> 205</span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a>,</div>
|
||||
<div class="line"><a id="l00206" name="l00206"></a><span class="lineno"> 206</span> <a class="code hl_function" href="class_py_dynamic_engine.html#a2ee1d745c1c21b9fcb652c96c42f1091">getSpeciesIndex</a>,</div>
|
||||
<div class="line"><a id="l00207" name="l00207"></a><span class="lineno"> 207</span> species</div>
|
||||
<div class="line"><a id="l00208" name="l00208"></a><span class="lineno"> 208</span> );</div>
|
||||
<div class="line"><a id="l00209" name="l00209"></a><span class="lineno"> 209</span>}</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00210" name="l00210"></a><span class="lineno"> 210</span> </div>
|
||||
<div class="foldopen" id="foldopen00211" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00211" name="l00211"></a><span class="lineno"><a class="line" href="class_py_dynamic_engine.html#a61bb4b430fe740cfb2c24e5cc673e4ac"> 211</a></span>std::vector<double> <a class="code hl_function" href="class_py_dynamic_engine.html#a61bb4b430fe740cfb2c24e5cc673e4ac">PyDynamicEngine::mapNetInToMolarAbundanceVector</a>(<span class="keyword">const</span> <a class="code hl_struct" href="structgridfire_1_1_net_in.html">gridfire::NetIn</a> &netIn)<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00212" name="l00212"></a><span class="lineno"> 212</span> PYBIND11_OVERRIDE_PURE(</div>
|
||||
<div class="line"><a id="l00213" name="l00213"></a><span class="lineno"> 213</span> std::vector<double>,</div>
|
||||
<div class="line"><a id="l00214" name="l00214"></a><span class="lineno"> 214</span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a>,</div>
|
||||
<div class="line"><a id="l00215" name="l00215"></a><span class="lineno"> 215</span> <a class="code hl_function" href="class_py_dynamic_engine.html#a61bb4b430fe740cfb2c24e5cc673e4ac">mapNetInToMolarAbundanceVector</a>,</div>
|
||||
<div class="line"><a id="l00216" name="l00216"></a><span class="lineno"> 216</span> netIn</div>
|
||||
<div class="line"><a id="l00217" name="l00217"></a><span class="lineno"> 217</span> );</div>
|
||||
<div class="line"><a id="l00218" name="l00218"></a><span class="lineno"> 218</span>}</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00219" name="l00219"></a><span class="lineno"> 219</span> </div>
|
||||
<div class="foldopen" id="foldopen00220" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00220" name="l00220"></a><span class="lineno"><a class="line" href="class_py_dynamic_engine.html#ac22a10412be6649bf379e6d61113c878"> 220</a></span><a class="code hl_struct" href="structgridfire_1_1_priming_report.html">gridfire::PrimingReport</a> <a class="code hl_function" href="class_py_dynamic_engine.html#ac22a10412be6649bf379e6d61113c878">PyDynamicEngine::primeEngine</a>(<span class="keyword">const</span> <a class="code hl_struct" href="structgridfire_1_1_net_in.html">gridfire::NetIn</a> &netIn) {</div>
|
||||
<div class="line"><a id="l00221" name="l00221"></a><span class="lineno"> 221</span> PYBIND11_OVERRIDE_PURE(</div>
|
||||
<div class="line"><a id="l00222" name="l00222"></a><span class="lineno"> 222</span> <a class="code hl_struct" href="structgridfire_1_1_priming_report.html">gridfire::PrimingReport</a>,</div>
|
||||
<div class="line"><a id="l00223" name="l00223"></a><span class="lineno"> 223</span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a>,</div>
|
||||
<div class="line"><a id="l00224" name="l00224"></a><span class="lineno"> 224</span> <a class="code hl_function" href="class_py_dynamic_engine.html#ac22a10412be6649bf379e6d61113c878">primeEngine</a>,</div>
|
||||
<div class="line"><a id="l00225" name="l00225"></a><span class="lineno"> 225</span> netIn</div>
|
||||
<div class="line"><a id="l00226" name="l00226"></a><span class="lineno"> 226</span> );</div>
|
||||
<div class="line"><a id="l00227" name="l00227"></a><span class="lineno"> 227</span>}</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00228" name="l00228"></a><span class="lineno"> 228</span> </div>
|
||||
<div class="foldopen" id="foldopen00229" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00229" name="l00229"></a><span class="lineno"><a class="line" href="class_py_engine_view.html#a3cd83dc57b521c65a14edf70357a8845"> 229</a></span><span class="keyword">const</span> <a class="code hl_class" href="classgridfire_1_1_engine.html">gridfire::Engine</a>& <a class="code hl_function" href="class_py_engine_view.html#a3cd83dc57b521c65a14edf70357a8845">PyEngineView::getBaseEngine</a>()<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00230" name="l00230"></a><span class="lineno"> 230</span> PYBIND11_OVERRIDE_PURE(</div>
|
||||
<div class="line"><a id="l00231" name="l00231"></a><span class="lineno"> 231</span> <span class="keyword">const</span> <a class="code hl_class" href="classgridfire_1_1_engine.html">gridfire::Engine</a>&,</div>
|
||||
<div class="line"><a id="l00232" name="l00232"></a><span class="lineno"> 232</span> <a class="code hl_class" href="classgridfire_1_1_engine_view.html">gridfire::EngineView<gridfire::Engine></a>,</div>
|
||||
<div class="line"><a id="l00233" name="l00233"></a><span class="lineno"> 233</span> <a class="code hl_function" href="class_py_engine_view.html#a3cd83dc57b521c65a14edf70357a8845">getBaseEngine</a></div>
|
||||
<div class="line"><a id="l00234" name="l00234"></a><span class="lineno"> 234</span> );</div>
|
||||
<div class="line"><a id="l00235" name="l00235"></a><span class="lineno"> 235</span>}</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00236" name="l00236"></a><span class="lineno"> 236</span> </div>
|
||||
<div class="foldopen" id="foldopen00237" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00237" name="l00237"></a><span class="lineno"><a class="line" href="class_py_dynamic_engine_view.html#a51680b135cfc3eea40daf9ef5aa903e0"> 237</a></span><span class="keyword">const</span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a>& <a class="code hl_function" href="class_py_dynamic_engine_view.html#a51680b135cfc3eea40daf9ef5aa903e0">PyDynamicEngineView::getBaseEngine</a>()<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00238" name="l00238"></a><span class="lineno"> 238</span> PYBIND11_OVERRIDE_PURE(</div>
|
||||
<div class="line"><a id="l00239" name="l00239"></a><span class="lineno"> 239</span> <span class="keyword">const</span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a>&,</div>
|
||||
<div class="line"><a id="l00240" name="l00240"></a><span class="lineno"> 240</span> <a class="code hl_class" href="classgridfire_1_1_engine_view.html">gridfire::EngineView<gridfire::DynamicEngine></a>,</div>
|
||||
<div class="line"><a id="l00241" name="l00241"></a><span class="lineno"> 241</span> <a class="code hl_function" href="class_py_dynamic_engine_view.html#a51680b135cfc3eea40daf9ef5aa903e0">getBaseEngine</a></div>
|
||||
<div class="line"><a id="l00242" name="l00242"></a><span class="lineno"> 242</span> );</div>
|
||||
<div class="line"><a id="l00243" name="l00243"></a><span class="lineno"> 243</span>}</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00244" name="l00244"></a><span class="lineno"> 244</span> </div>
|
||||
<div class="line"><a id="l00245" name="l00245"></a><span class="lineno"> 245</span> </div>
|
||||
<div class="ttc" id="aclass_py_dynamic_engine_html_a020044829e0146427ed4830e5b02c4f3"><div class="ttname"><a href="class_py_dynamic_engine.html#a020044829e0146427ed4830e5b02c4f3">PyDynamicEngine::getSpeciesDestructionTimescales</a></div><div class="ttdeci">std::expected< std::unordered_map< fourdst::atomic::Species, double >, gridfire::expectations::StaleEngineError > getSpeciesDestructionTimescales(const std::vector< double > &Y, double T9, double rho) const override</div><div class="ttdef"><b>Definition</b> <a href="#l00158">py_engine.cpp:158</a></div></div>
|
||||
<div class="ttc" id="aclass_py_dynamic_engine_html_a02a4c86c9637a3c9c9ca8ddd82ecff22"><div class="ttname"><a href="class_py_dynamic_engine.html#a02a4c86c9637a3c9c9ca8ddd82ecff22">PyDynamicEngine::getSpeciesTimescales</a></div><div class="ttdeci">std::expected< std::unordered_map< fourdst::atomic::Species, double >, gridfire::expectations::StaleEngineError > getSpeciesTimescales(const std::vector< double > &Y, double T9, double rho) const override</div><div class="ttdoc">Compute timescales for all species in the network.</div><div class="ttdef"><b>Definition</b> <a href="#l00149">py_engine.cpp:149</a></div></div>
|
||||
<div class="ttc" id="aclass_py_dynamic_engine_html_a1c888bbc0618f1ae02d9a53e45f3c159"><div class="ttname"><a href="class_py_dynamic_engine.html#a1c888bbc0618f1ae02d9a53e45f3c159">PyDynamicEngine::getJacobianMatrixEntry</a></div><div class="ttdeci">double getJacobianMatrixEntry(int i, int j) const override</div><div class="ttdoc">Get an entry from the previously generated Jacobian matrix.</div><div class="ttdef"><b>Definition</b> <a href="#l00097">py_engine.cpp:97</a></div></div>
|
||||
<div class="ttc" id="aclass_py_dynamic_engine_html_a2066649ca11a869c054079ea12d8d0e9"><div class="ttname"><a href="class_py_dynamic_engine.html#a2066649ca11a869c054079ea12d8d0e9">PyDynamicEngine::generateStoichiometryMatrix</a></div><div class="ttdeci">void generateStoichiometryMatrix() override</div><div class="ttdoc">Generate the stoichiometry matrix for the network.</div><div class="ttdef"><b>Definition</b> <a href="#l00106">py_engine.cpp:106</a></div></div>
|
||||
<div class="ttc" id="aclass_py_dynamic_engine_html_a2246382b1c98ba69cdb419bba63a6d03"><div class="ttname"><a href="class_py_dynamic_engine.html#a2246382b1c98ba69cdb419bba63a6d03">PyDynamicEngine::m_species_cache</a></div><div class="ttdeci">std::vector< fourdst::atomic::Species > m_species_cache</div><div class="ttdef"><b>Definition</b> <a href="py__engine_8h_source.html#l00048">py_engine.h:48</a></div></div>
|
||||
<div class="ttc" id="aclass_py_dynamic_engine_html_a2ee1d745c1c21b9fcb652c96c42f1091"><div class="ttname"><a href="class_py_dynamic_engine.html#a2ee1d745c1c21b9fcb652c96c42f1091">PyDynamicEngine::getSpeciesIndex</a></div><div class="ttdeci">int getSpeciesIndex(const fourdst::atomic::Species &species) const override</div><div class="ttdef"><b>Definition</b> <a href="#l00202">py_engine.cpp:202</a></div></div>
|
||||
<div class="ttc" id="aclass_py_dynamic_engine_html_a55bf19ed7534a312a36faf74753f7b14"><div class="ttname"><a href="class_py_dynamic_engine.html#a55bf19ed7534a312a36faf74753f7b14">PyDynamicEngine::isStale</a></div><div class="ttdeci">bool isStale(const gridfire::NetIn &netIn) override</div><div class="ttdef"><b>Definition</b> <a href="#l00176">py_engine.cpp:176</a></div></div>
|
||||
<div class="ttc" id="aclass_py_dynamic_engine_html_a5988cfba247631ba6c00795cafda9a38"><div class="ttname"><a href="class_py_dynamic_engine.html#a5988cfba247631ba6c00795cafda9a38">PyDynamicEngine::getNetworkReactions</a></div><div class="ttdeci">const gridfire::reaction::LogicalReactionSet & getNetworkReactions() const override</div><div class="ttdoc">Get the set of logical reactions in the network.</div><div class="ttdef"><b>Definition</b> <a href="#l00132">py_engine.cpp:132</a></div></div>
|
||||
<div class="ttc" id="aclass_py_dynamic_engine_html_a5b7f0cfe327c634ec125303256de8b9a"><div class="ttname"><a href="class_py_dynamic_engine.html#a5b7f0cfe327c634ec125303256de8b9a">PyDynamicEngine::calculateRHSAndEnergy</a></div><div class="ttdeci">std::expected< gridfire::StepDerivatives< double >, gridfire::expectations::StaleEngineError > calculateRHSAndEnergy(const std::vector< double > &Y, double T9, double rho) const override</div><div class="ttdoc">Calculate the right-hand side (dY/dt) and energy generation.</div><div class="ttdef"><b>Definition</b> <a href="#l00070">py_engine.cpp:70</a></div></div>
|
||||
<div class="ttc" id="aclass_py_dynamic_engine_html_a5bd40c752db1badcd600797c9113121d"><div class="ttname"><a href="class_py_dynamic_engine.html#a5bd40c752db1badcd600797c9113121d">PyDynamicEngine::generateJacobianMatrix</a></div><div class="ttdeci">void generateJacobianMatrix(const std::vector< double > &Y_dynamic, double T9, double rho) const override</div><div class="ttdoc">Generate the Jacobian matrix for the current state.</div><div class="ttdef"><b>Definition</b> <a href="#l00079">py_engine.cpp:79</a></div></div>
|
||||
<div class="ttc" id="aclass_py_dynamic_engine_html_a61bb4b430fe740cfb2c24e5cc673e4ac"><div class="ttname"><a href="class_py_dynamic_engine.html#a61bb4b430fe740cfb2c24e5cc673e4ac">PyDynamicEngine::mapNetInToMolarAbundanceVector</a></div><div class="ttdeci">std::vector< double > mapNetInToMolarAbundanceVector(const gridfire::NetIn &netIn) const override</div><div class="ttdef"><b>Definition</b> <a href="#l00211">py_engine.cpp:211</a></div></div>
|
||||
<div class="ttc" id="aclass_py_dynamic_engine_html_a6224f546ba66b1257506b1fc9f47195a"><div class="ttname"><a href="class_py_dynamic_engine.html#a6224f546ba66b1257506b1fc9f47195a">PyDynamicEngine::calculateMolarReactionFlow</a></div><div class="ttdeci">double calculateMolarReactionFlow(const gridfire::reaction::Reaction &reaction, const std::vector< double > &Y, double T9, double rho) const override</div><div class="ttdoc">Calculate the molar reaction flow for a given reaction.</div><div class="ttdef"><b>Definition</b> <a href="#l00123">py_engine.cpp:123</a></div></div>
|
||||
<div class="ttc" id="aclass_py_dynamic_engine_html_ab48ef6db18da20024aa563a91fa16f83"><div class="ttname"><a href="class_py_dynamic_engine.html#ab48ef6db18da20024aa563a91fa16f83">PyDynamicEngine::getStoichiometryMatrixEntry</a></div><div class="ttdeci">int getStoichiometryMatrixEntry(int speciesIndex, int reactionIndex) const override</div><div class="ttdoc">Get an entry from the stoichiometry matrix.</div><div class="ttdef"><b>Definition</b> <a href="#l00114">py_engine.cpp:114</a></div></div>
|
||||
<div class="ttc" id="aclass_py_dynamic_engine_html_ab4cfdca5e15957c5cef75ffa6dedeee5"><div class="ttname"><a href="class_py_dynamic_engine.html#ab4cfdca5e15957c5cef75ffa6dedeee5">PyDynamicEngine::getScreeningModel</a></div><div class="ttdeci">gridfire::screening::ScreeningType getScreeningModel() const override</div><div class="ttdoc">Get the current electron screening model.</div><div class="ttdef"><b>Definition</b> <a href="#l00194">py_engine.cpp:194</a></div></div>
|
||||
<div class="ttc" id="aclass_py_dynamic_engine_html_ac22a10412be6649bf379e6d61113c878"><div class="ttname"><a href="class_py_dynamic_engine.html#ac22a10412be6649bf379e6d61113c878">PyDynamicEngine::primeEngine</a></div><div class="ttdeci">gridfire::PrimingReport primeEngine(const gridfire::NetIn &netIn) override</div><div class="ttdef"><b>Definition</b> <a href="#l00220">py_engine.cpp:220</a></div></div>
|
||||
<div class="ttc" id="aclass_py_dynamic_engine_html_af8e6a8cd44f278535d7bcc9a896d6da8"><div class="ttname"><a href="class_py_dynamic_engine.html#af8e6a8cd44f278535d7bcc9a896d6da8">PyDynamicEngine::update</a></div><div class="ttdeci">fourdst::composition::Composition update(const gridfire::NetIn &netIn) override</div><div class="ttdoc">Update the internal state of the engine.</div><div class="ttdef"><b>Definition</b> <a href="#l00167">py_engine.cpp:167</a></div></div>
|
||||
<div class="ttc" id="aclass_py_dynamic_engine_html_afa3abfd612033336a656f092721c14ac"><div class="ttname"><a href="class_py_dynamic_engine.html#afa3abfd612033336a656f092721c14ac">PyDynamicEngine::setScreeningModel</a></div><div class="ttdeci">void setScreeningModel(gridfire::screening::ScreeningType model) override</div><div class="ttdoc">Set the electron screening model.</div><div class="ttdef"><b>Definition</b> <a href="#l00185">py_engine.cpp:185</a></div></div>
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<div class="ttc" id="aclass_py_dynamic_engine_html_afc745e7ab5da5d8b3cf916044515cd7d"><div class="ttname"><a href="class_py_dynamic_engine.html#afc745e7ab5da5d8b3cf916044515cd7d">PyDynamicEngine::getNetworkSpecies</a></div><div class="ttdeci">const std::vector< fourdst::atomic::Species > & getNetworkSpecies() const override</div><div class="ttdoc">PyDynamicEngine Implementation ///.</div><div class="ttdef"><b>Definition</b> <a href="#l00050">py_engine.cpp:50</a></div></div>
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<div class="ttc" id="aclass_py_dynamic_engine_html_afd818c408c64d207e71b1a90426328d6"><div class="ttname"><a href="class_py_dynamic_engine.html#afd818c408c64d207e71b1a90426328d6">PyDynamicEngine::setNetworkReactions</a></div><div class="ttdeci">void setNetworkReactions(const gridfire::reaction::LogicalReactionSet &reactions) override</div><div class="ttdef"><b>Definition</b> <a href="#l00140">py_engine.cpp:140</a></div></div>
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<div class="ttc" id="aclass_py_dynamic_engine_view_html_a51680b135cfc3eea40daf9ef5aa903e0"><div class="ttname"><a href="class_py_dynamic_engine_view.html#a51680b135cfc3eea40daf9ef5aa903e0">PyDynamicEngineView::getBaseEngine</a></div><div class="ttdeci">const gridfire::DynamicEngine & getBaseEngine() const override</div><div class="ttdoc">Access the underlying engine instance.</div><div class="ttdef"><b>Definition</b> <a href="#l00237">py_engine.cpp:237</a></div></div>
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<div class="ttc" id="aclass_py_engine_html_a2d240423899e039c2ca688e96f8af1f2"><div class="ttname"><a href="class_py_engine.html#a2d240423899e039c2ca688e96f8af1f2">PyEngine::getNetworkSpecies</a></div><div class="ttdeci">const std::vector< fourdst::atomic::Species > & getNetworkSpecies() const override</div><div class="ttdoc">Get the list of species in the network.</div><div class="ttdef"><b>Definition</b> <a href="#l00016">py_engine.cpp:16</a></div></div>
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<div class="ttc" id="aclass_py_engine_html_a2f92602ecf210414b46838fc0a9ae26d"><div class="ttname"><a href="class_py_engine.html#a2f92602ecf210414b46838fc0a9ae26d">PyEngine::calculateRHSAndEnergy</a></div><div class="ttdeci">std::expected< gridfire::StepDerivatives< double >, gridfire::expectations::StaleEngineError > calculateRHSAndEnergy(const std::vector< double > &Y, double T9, double rho) const override</div><div class="ttdoc">Calculate the right-hand side (dY/dt) and energy generation.</div><div class="ttdef"><b>Definition</b> <a href="#l00037">py_engine.cpp:37</a></div></div>
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<div class="ttc" id="aclass_py_engine_html_a73caaa7606e2cdfd1aa82729a78ebb73"><div class="ttname"><a href="class_py_engine.html#a73caaa7606e2cdfd1aa82729a78ebb73">PyEngine::m_species_cache</a></div><div class="ttdeci">std::vector< fourdst::atomic::Species > m_species_cache</div><div class="ttdef"><b>Definition</b> <a href="py__engine_8h_source.html#l00017">py_engine.h:17</a></div></div>
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<div class="ttc" id="aclass_py_engine_view_html_a3cd83dc57b521c65a14edf70357a8845"><div class="ttname"><a href="class_py_engine_view.html#a3cd83dc57b521c65a14edf70357a8845">PyEngineView::getBaseEngine</a></div><div class="ttdeci">const gridfire::Engine & getBaseEngine() const override</div><div class="ttdoc">Access the underlying engine instance.</div><div class="ttdef"><b>Definition</b> <a href="#l00229">py_engine.cpp:229</a></div></div>
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<div class="ttc" id="aclassgridfire_1_1_dynamic_engine_html"><div class="ttname"><a href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></div><div class="ttdoc">Abstract class for engines supporting Jacobian and stoichiometry operations.</div><div class="ttdef"><b>Definition</b> <a href="engine__abstract_8h_source.html#l00130">engine_abstract.h:130</a></div></div>
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<div class="ttc" id="aclassgridfire_1_1_engine_html"><div class="ttname"><a href="classgridfire_1_1_engine.html">gridfire::Engine</a></div><div class="ttdoc">Abstract base class for a reaction network engine.</div><div class="ttdef"><b>Definition</b> <a href="engine__abstract_8h_source.html#l00084">engine_abstract.h:84</a></div></div>
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<div class="ttc" id="aclassgridfire_1_1_engine_view_html"><div class="ttname"><a href="classgridfire_1_1_engine_view.html">gridfire::EngineView</a></div><div class="ttdoc">Abstract base class for a "view" of a reaction network engine.</div><div class="ttdef"><b>Definition</b> <a href="engine__view__abstract_8h_source.html#l00074">engine_view_abstract.h:74</a></div></div>
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<div class="ttc" id="aclassgridfire_1_1reaction_1_1_reaction_html"><div class="ttname"><a href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></div><div class="ttdoc">Represents a single nuclear reaction from a specific data source.</div><div class="ttdef"><b>Definition</b> <a href="reaction_8h_source.html#l00072">reaction.h:72</a></div></div>
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<div class="ttc" id="aengine_8h_html"><div class="ttname"><a href="engine_8h.html">engine.h</a></div><div class="ttdoc">Core header for the GridFire reaction network engine module.</div></div>
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<div class="ttc" id="anamespacegridfire_1_1reaction_html_aa86f08712565f278adacc7cd2361eb31"><div class="ttname"><a href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">gridfire::reaction::LogicalReactionSet</a></div><div class="ttdeci">TemplatedReactionSet< LogicalReaction > LogicalReactionSet</div><div class="ttdoc">A set of logical reactions.</div><div class="ttdef"><b>Definition</b> <a href="reaction_8h_source.html#l00563">reaction.h:563</a></div></div>
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<div class="ttc" id="anamespacegridfire_1_1screening_html_aa82aafbc4f8c28d0a75b60798e3a7d25"><div class="ttname"><a href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">gridfire::screening::ScreeningType</a></div><div class="ttdeci">ScreeningType</div><div class="ttdoc">Enumerates the available plasma screening models.</div><div class="ttdef"><b>Definition</b> <a href="screening__types_8h_source.html#l00015">screening_types.h:15</a></div></div>
|
||||
<div class="ttc" id="anamespacegridfire_html_a898dfe22579e649935645cbd6f073178"><div class="ttname"><a href="namespacegridfire.html#a898dfe22579e649935645cbd6f073178">gridfire::SparsityPattern</a></div><div class="ttdeci">std::vector< std::pair< size_t, size_t > > SparsityPattern</div><div class="ttdef"><b>Definition</b> <a href="engine__abstract_8h_source.html#l00065">engine_abstract.h:65</a></div></div>
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<div class="ttc" id="apy__engine_8h_html"><div class="ttname"><a href="py__engine_8h.html">py_engine.h</a></div></div>
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<div class="ttc" id="astructgridfire_1_1_net_in_html"><div class="ttname"><a href="structgridfire_1_1_net_in.html">gridfire::NetIn</a></div><div class="ttdef"><b>Definition</b> <a href="network_8h_source.html#l00053">network.h:53</a></div></div>
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<div class="ttc" id="astructgridfire_1_1_priming_report_html"><div class="ttname"><a href="structgridfire_1_1_priming_report.html">gridfire::PrimingReport</a></div><div class="ttdoc">Captures the result of a network priming operation.</div><div class="ttdef"><b>Definition</b> <a href="reporting_8h_source.html#l00067">reporting.h:67</a></div></div>
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||||
<div class="ttc" id="astructgridfire_1_1_step_derivatives_html"><div class="ttname"><a href="structgridfire_1_1_step_derivatives.html">gridfire::StepDerivatives</a></div><div class="ttdoc">Structure holding derivatives and energy generation for a network step.</div><div class="ttdef"><b>Definition</b> <a href="engine__abstract_8h_source.html#l00060">engine_abstract.h:60</a></div></div>
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<div class="ttc" id="astructgridfire_1_1expectations_1_1_stale_engine_error_html"><div class="ttname"><a href="structgridfire_1_1expectations_1_1_stale_engine_error.html">gridfire::expectations::StaleEngineError</a></div><div class="ttdef"><b>Definition</b> <a href="expected__engine_8h_source.html#l00044">expected_engine.h:44</a></div></div>
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