docs(docs): asdded and cleaned up docs

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<title>GridFire: src/network/include/gridfire/io/network_file.h Source File</title>
<title>GridFire: src/include/gridfire/io/network_file.h Source File</title>
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@@ -114,77 +114,71 @@ $(function(){initNavTree('network__file_8h_source.html',''); initResizable(true)
<div class="line"><a id="l00010" name="l00010"></a><span class="lineno"> 10</span> </div>
<div class="foldopen" id="foldopen00011" data-start="{" data-end="}">
<div class="line"><a id="l00011" name="l00011"></a><span class="lineno"><a class="line" href="namespacegridfire_1_1io.html"> 11</a></span><span class="keyword">namespace </span><a class="code hl_namespace" href="namespacegridfire_1_1io.html">gridfire::io</a> {</div>
<div class="line"><a id="l00012" name="l00012"></a><span class="lineno"> 12</span></div>
<div class="foldopen" id="foldopen00020" data-start="{" data-end="};">
<div class="line"><a id="l00020" name="l00020"></a><span class="lineno"><a class="line" href="structgridfire_1_1io_1_1_parsed_network_data.html"> 20</a></span> <span class="keyword">struct </span><a class="code hl_struct" href="structgridfire_1_1io_1_1_parsed_network_data.html">ParsedNetworkData</a> {</div>
<div class="line"><a id="l00027" name="l00027"></a><span class="lineno"><a class="line" href="structgridfire_1_1io_1_1_parsed_network_data.html#a5145c672877638e6113abf1f719b246d"> 27</a></span> std::vector&lt;std::string&gt; <a class="code hl_variable" href="structgridfire_1_1io_1_1_parsed_network_data.html#a5145c672877638e6113abf1f719b246d">reactionPENames</a>;</div>
<div class="line"><a id="l00028" name="l00028"></a><span class="lineno"> 28</span> };</div>
<div class="line"><a id="l00012" name="l00012"></a><span class="lineno"><a class="line" href="namespacegridfire_1_1io.html#abcbdcbd13cfa8c9fbe1b48e8ee2cc352"> 12</a></span> <span class="keyword">typedef</span> std::vector&lt;std::string&gt; <a class="code hl_typedef" href="namespacegridfire_1_1io.html#abcbdcbd13cfa8c9fbe1b48e8ee2cc352">ParsedNetworkData</a>;</div>
<div class="line"><a id="l00013" name="l00013"></a><span class="lineno"> 13</span></div>
<div class="foldopen" id="foldopen00022" data-start="{" data-end="};">
<div class="line"><a id="l00022" name="l00022"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_network_file_parser.html"> 22</a></span> <span class="keyword">class </span><a class="code hl_class" href="classgridfire_1_1io_1_1_network_file_parser.html">NetworkFileParser</a> {</div>
<div class="line"><a id="l00023" name="l00023"></a><span class="lineno"> 23</span> <span class="keyword">public</span>:</div>
<div class="line"><a id="l00027" name="l00027"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_network_file_parser.html#a9b4095d06fad5df3805c92ae97b3eab3"> 27</a></span> <span class="keyword">virtual</span> <a class="code hl_function" href="classgridfire_1_1io_1_1_network_file_parser.html#a9b4095d06fad5df3805c92ae97b3eab3">~NetworkFileParser</a>() = <span class="keywordflow">default</span>;</div>
<div class="line"><a id="l00028" name="l00028"></a><span class="lineno"> 28</span></div>
<div class="line"><a id="l00055" name="l00055"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_network_file_parser.html#a66e8e724c903d6ef4dd1c8103276bdbf"> 55</a></span> [[nodiscard]] <span class="keyword">virtual</span> <a class="code hl_typedef" href="namespacegridfire_1_1io.html#abcbdcbd13cfa8c9fbe1b48e8ee2cc352">ParsedNetworkData</a> <a class="code hl_function" href="classgridfire_1_1io_1_1_network_file_parser.html#a66e8e724c903d6ef4dd1c8103276bdbf">parse</a>(<span class="keyword">const</span> std::string&amp; filename) <span class="keyword">const</span> = 0;</div>
<div class="line"><a id="l00056" name="l00056"></a><span class="lineno"> 56</span> </div>
<div class="line"><a id="l00057" name="l00057"></a><span class="lineno"> 57</span> };</div>
</div>
<div class="line"><a id="l00029" name="l00029"></a><span class="lineno"> 29</span></div>
<div class="foldopen" id="foldopen00038" data-start="{" data-end="};">
<div class="line"><a id="l00038" name="l00038"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_network_file_parser.html"> 38</a></span> <span class="keyword">class </span><a class="code hl_class" href="classgridfire_1_1io_1_1_network_file_parser.html">NetworkFileParser</a> {</div>
<div class="line"><a id="l00039" name="l00039"></a><span class="lineno"> 39</span> <span class="keyword">public</span>:</div>
<div class="line"><a id="l00043" name="l00043"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_network_file_parser.html#a9b4095d06fad5df3805c92ae97b3eab3"> 43</a></span> <span class="keyword">virtual</span> <a class="code hl_function" href="classgridfire_1_1io_1_1_network_file_parser.html#a9b4095d06fad5df3805c92ae97b3eab3">~NetworkFileParser</a>() = <span class="keywordflow">default</span>;</div>
<div class="line"><a id="l00044" name="l00044"></a><span class="lineno"> 44</span></div>
<div class="line"><a id="l00071" name="l00071"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_network_file_parser.html#a66e8e724c903d6ef4dd1c8103276bdbf"> 71</a></span> [[nodiscard]] <span class="keyword">virtual</span> <a class="code hl_struct" href="structgridfire_1_1io_1_1_parsed_network_data.html">ParsedNetworkData</a> <a class="code hl_function" href="classgridfire_1_1io_1_1_network_file_parser.html#a66e8e724c903d6ef4dd1c8103276bdbf">parse</a>(<span class="keyword">const</span> std::string&amp; filename) <span class="keyword">const</span> = 0;</div>
<div class="line"><a id="l00072" name="l00072"></a><span class="lineno"> 72</span> </div>
<div class="line"><a id="l00073" name="l00073"></a><span class="lineno"> 73</span> };</div>
<div class="line"><a id="l00058" name="l00058"></a><span class="lineno"> 58</span></div>
<div class="foldopen" id="foldopen00068" data-start="{" data-end="};">
<div class="line"><a id="l00068" name="l00068"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html"> 68</a></span> <span class="keyword">class </span><a class="code hl_function" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#afc8ed91e8c98205c505e3d9f0cff1993">SimpleReactionListFileParser</a> final : <span class="keyword">public</span> <a class="code hl_class" href="classgridfire_1_1io_1_1_network_file_parser.html">NetworkFileParser</a> {</div>
<div class="line"><a id="l00069" name="l00069"></a><span class="lineno"> 69</span> <span class="keyword">public</span>:</div>
<div class="line"><a id="l00075" name="l00075"></a><span class="lineno"> 75</span> <span class="keyword">explicit</span> <a class="code hl_function" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#afc8ed91e8c98205c505e3d9f0cff1993">SimpleReactionListFileParser</a>();</div>
<div class="line"><a id="l00102" name="l00102"></a><span class="lineno"> 102</span> <a class="code hl_typedef" href="namespacegridfire_1_1io.html#abcbdcbd13cfa8c9fbe1b48e8ee2cc352">ParsedNetworkData</a> <a class="code hl_function" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4df01e3a93e1291d2cde0458545325f8">parse</a>(<span class="keyword">const</span> std::string&amp; filename) <span class="keyword">const override</span>;</div>
<div class="line"><a id="l00103" name="l00103"></a><span class="lineno"> 103</span> <span class="keyword">private</span>:</div>
<div class="line"><a id="l00104" name="l00104"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#ad913155a5a2a36b29e4ce4ca8d71c036"> 104</a></span> <span class="keyword">using </span><a class="code hl_typedef" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#ad913155a5a2a36b29e4ce4ca8d71c036">Config</a> = fourdst::config::Config;</div>
<div class="line"><a id="l00105" name="l00105"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a6f8f9a1f54cd2be5ec66c3181be892de"> 105</a></span> <span class="keyword">using </span><a class="code hl_typedef" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a6f8f9a1f54cd2be5ec66c3181be892de">LogManager</a> = fourdst::logging::LogManager;</div>
<div class="line"><a id="l00106" name="l00106"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4061e99bd77a3de0d6d9e317bfc74874"> 106</a></span> <a class="code hl_typedef" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#ad913155a5a2a36b29e4ce4ca8d71c036">Config</a>&amp; <a class="code hl_variable" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4061e99bd77a3de0d6d9e317bfc74874">m_config</a> = Config::getInstance();</div>
<div class="line"><a id="l00107" name="l00107"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#acef7eafe3cbea159259f69c88d309b66"> 107</a></span> quill::Logger* <a class="code hl_variable" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#acef7eafe3cbea159259f69c88d309b66">m_logger</a> = LogManager::getInstance().getLogger(<span class="stringliteral">&quot;log&quot;</span>);</div>
<div class="line"><a id="l00108" name="l00108"></a><span class="lineno"> 108</span> };</div>
</div>
<div class="line"><a id="l00074" name="l00074"></a><span class="lineno"> 74</span></div>
<div class="foldopen" id="foldopen00084" data-start="{" data-end="};">
<div class="line"><a id="l00084" name="l00084"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html"> 84</a></span> <span class="keyword">class </span><a class="code hl_function" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#afc8ed91e8c98205c505e3d9f0cff1993">SimpleReactionListFileParser</a> final : <span class="keyword">public</span> <a class="code hl_class" href="classgridfire_1_1io_1_1_network_file_parser.html">NetworkFileParser</a> {</div>
<div class="line"><a id="l00085" name="l00085"></a><span class="lineno"> 85</span> <span class="keyword">public</span>:</div>
<div class="line"><a id="l00091" name="l00091"></a><span class="lineno"> 91</span> <span class="keyword">explicit</span> <a class="code hl_function" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#afc8ed91e8c98205c505e3d9f0cff1993">SimpleReactionListFileParser</a>();</div>
<div class="line"><a id="l00118" name="l00118"></a><span class="lineno"> 118</span> <a class="code hl_struct" href="structgridfire_1_1io_1_1_parsed_network_data.html">ParsedNetworkData</a> <a class="code hl_function" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4df01e3a93e1291d2cde0458545325f8">parse</a>(<span class="keyword">const</span> std::string&amp; filename) <span class="keyword">const override</span>;</div>
<div class="line"><a id="l00119" name="l00119"></a><span class="lineno"> 119</span> <span class="keyword">private</span>:</div>
<div class="line"><a id="l00120" name="l00120"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#ad913155a5a2a36b29e4ce4ca8d71c036"> 120</a></span> <span class="keyword">using </span><a class="code hl_typedef" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#ad913155a5a2a36b29e4ce4ca8d71c036">Config</a> = fourdst::config::Config;</div>
<div class="line"><a id="l00121" name="l00121"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a6f8f9a1f54cd2be5ec66c3181be892de"> 121</a></span> <span class="keyword">using </span><a class="code hl_typedef" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a6f8f9a1f54cd2be5ec66c3181be892de">LogManager</a> = fourdst::logging::LogManager;</div>
<div class="line"><a id="l00122" name="l00122"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4061e99bd77a3de0d6d9e317bfc74874"> 122</a></span> <a class="code hl_typedef" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#ad913155a5a2a36b29e4ce4ca8d71c036">Config</a>&amp; <a class="code hl_variable" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4061e99bd77a3de0d6d9e317bfc74874">m_config</a> = Config::getInstance();</div>
<div class="line"><a id="l00123" name="l00123"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#acef7eafe3cbea159259f69c88d309b66"> 123</a></span> quill::Logger* <a class="code hl_variable" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#acef7eafe3cbea159259f69c88d309b66">m_logger</a> = LogManager::getInstance().getLogger(<span class="stringliteral">&quot;log&quot;</span>);</div>
<div class="line"><a id="l00124" name="l00124"></a><span class="lineno"> 124</span> };</div>
<div class="line"><a id="l00109" name="l00109"></a><span class="lineno"> 109</span></div>
<div class="foldopen" id="foldopen00119" data-start="{" data-end="};">
<div class="line"><a id="l00119" name="l00119"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html"> 119</a></span> <span class="keyword">class </span><a class="code hl_function" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ac5963d0da6780de753df996b490f8d2c">MESANetworkFileParser</a> final : <span class="keyword">public</span> <a class="code hl_class" href="classgridfire_1_1io_1_1_network_file_parser.html">NetworkFileParser</a> {</div>
<div class="line"><a id="l00120" name="l00120"></a><span class="lineno"> 120</span> <span class="keyword">public</span>:</div>
<div class="line"><a id="l00129" name="l00129"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ac5963d0da6780de753df996b490f8d2c"> 129</a></span> <span class="keyword">explicit</span> <a class="code hl_function" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ac5963d0da6780de753df996b490f8d2c">MESANetworkFileParser</a>(<span class="keyword">const</span> std::string&amp; filename);</div>
<div class="line"><a id="l00142" name="l00142"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a568194277733b5c537901f8af32ee329"> 142</a></span> <a class="code hl_typedef" href="namespacegridfire_1_1io.html#abcbdcbd13cfa8c9fbe1b48e8ee2cc352">ParsedNetworkData</a> <a class="code hl_function" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a568194277733b5c537901f8af32ee329">parse</a>(<span class="keyword">const</span> std::string&amp; filename) <span class="keyword">const override</span>;</div>
<div class="line"><a id="l00143" name="l00143"></a><span class="lineno"> 143</span> <span class="keyword">private</span>:</div>
<div class="line"><a id="l00144" name="l00144"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#af43ad8375abf1cedfdccc296b9958c2b"> 144</a></span> <span class="keyword">using </span><a class="code hl_typedef" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#af43ad8375abf1cedfdccc296b9958c2b">Config</a> = fourdst::config::Config;</div>
<div class="line"><a id="l00145" name="l00145"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a84aa6894a331ad57bdab1e1ab85d4055"> 145</a></span> <span class="keyword">using </span><a class="code hl_typedef" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a84aa6894a331ad57bdab1e1ab85d4055">LogManager</a> = fourdst::logging::LogManager;</div>
<div class="line"><a id="l00146" name="l00146"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#aea206c3a7600db8d657666fef88fa20d"> 146</a></span> <a class="code hl_typedef" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#af43ad8375abf1cedfdccc296b9958c2b">Config</a>&amp; <a class="code hl_variable" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#aea206c3a7600db8d657666fef88fa20d">m_config</a> = Config::getInstance();</div>
<div class="line"><a id="l00147" name="l00147"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab9c683289d48e58edf06bf59215b4937"> 147</a></span> quill::Logger* <a class="code hl_variable" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab9c683289d48e58edf06bf59215b4937">m_logger</a> = LogManager::getInstance().getLogger(<span class="stringliteral">&quot;log&quot;</span>);</div>
<div class="line"><a id="l00148" name="l00148"></a><span class="lineno"> 148</span> </div>
<div class="line"><a id="l00149" name="l00149"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab7f82597abf17f16c401bcdf528bd099"> 149</a></span> std::string <a class="code hl_variable" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab7f82597abf17f16c401bcdf528bd099">m_filename</a>;</div>
<div class="line"><a id="l00150" name="l00150"></a><span class="lineno"> 150</span> };</div>
</div>
<div class="line"><a id="l00125" name="l00125"></a><span class="lineno"> 125</span></div>
<div class="foldopen" id="foldopen00135" data-start="{" data-end="};">
<div class="line"><a id="l00135" name="l00135"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html"> 135</a></span> <span class="keyword">class </span><a class="code hl_function" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ac5963d0da6780de753df996b490f8d2c">MESANetworkFileParser</a> final : <span class="keyword">public</span> <a class="code hl_class" href="classgridfire_1_1io_1_1_network_file_parser.html">NetworkFileParser</a> {</div>
<div class="line"><a id="l00136" name="l00136"></a><span class="lineno"> 136</span> <span class="keyword">public</span>:</div>
<div class="line"><a id="l00145" name="l00145"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ac5963d0da6780de753df996b490f8d2c"> 145</a></span> <span class="keyword">explicit</span> <a class="code hl_function" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ac5963d0da6780de753df996b490f8d2c">MESANetworkFileParser</a>(<span class="keyword">const</span> std::string&amp; filename);</div>
<div class="line"><a id="l00158" name="l00158"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a568194277733b5c537901f8af32ee329"> 158</a></span> <a class="code hl_struct" href="structgridfire_1_1io_1_1_parsed_network_data.html">ParsedNetworkData</a> <a class="code hl_function" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a568194277733b5c537901f8af32ee329">parse</a>(<span class="keyword">const</span> std::string&amp; filename) <span class="keyword">const override</span>;</div>
<div class="line"><a id="l00159" name="l00159"></a><span class="lineno"> 159</span> <span class="keyword">private</span>:</div>
<div class="line"><a id="l00160" name="l00160"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#af43ad8375abf1cedfdccc296b9958c2b"> 160</a></span> <span class="keyword">using </span><a class="code hl_typedef" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#af43ad8375abf1cedfdccc296b9958c2b">Config</a> = fourdst::config::Config;</div>
<div class="line"><a id="l00161" name="l00161"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a84aa6894a331ad57bdab1e1ab85d4055"> 161</a></span> <span class="keyword">using </span><a class="code hl_typedef" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a84aa6894a331ad57bdab1e1ab85d4055">LogManager</a> = fourdst::logging::LogManager;</div>
<div class="line"><a id="l00162" name="l00162"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#aea206c3a7600db8d657666fef88fa20d"> 162</a></span> <a class="code hl_typedef" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#af43ad8375abf1cedfdccc296b9958c2b">Config</a>&amp; <a class="code hl_variable" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#aea206c3a7600db8d657666fef88fa20d">m_config</a> = Config::getInstance();</div>
<div class="line"><a id="l00163" name="l00163"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab9c683289d48e58edf06bf59215b4937"> 163</a></span> quill::Logger* <a class="code hl_variable" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab9c683289d48e58edf06bf59215b4937">m_logger</a> = LogManager::getInstance().getLogger(<span class="stringliteral">&quot;log&quot;</span>);</div>
<div class="line"><a id="l00164" name="l00164"></a><span class="lineno"> 164</span> </div>
<div class="line"><a id="l00165" name="l00165"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab7f82597abf17f16c401bcdf528bd099"> 165</a></span> std::string <a class="code hl_variable" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab7f82597abf17f16c401bcdf528bd099">m_filename</a>;</div>
<div class="line"><a id="l00166" name="l00166"></a><span class="lineno"> 166</span> };</div>
</div>
<div class="line"><a id="l00167" name="l00167"></a><span class="lineno"> 167</span>}</div>
<div class="line"><a id="l00151" name="l00151"></a><span class="lineno"> 151</span>}</div>
</div>
<div class="ttc" id="aclassgridfire_1_1io_1_1_m_e_s_a_network_file_parser_html_a568194277733b5c537901f8af32ee329"><div class="ttname"><a href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a568194277733b5c537901f8af32ee329">gridfire::io::MESANetworkFileParser::parse</a></div><div class="ttdeci">ParsedNetworkData parse(const std::string &amp;filename) const override</div><div class="ttdoc">Parses a MESA-format network file.</div></div>
<div class="ttc" id="aclassgridfire_1_1io_1_1_m_e_s_a_network_file_parser_html_a84aa6894a331ad57bdab1e1ab85d4055"><div class="ttname"><a href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a84aa6894a331ad57bdab1e1ab85d4055">gridfire::io::MESANetworkFileParser::LogManager</a></div><div class="ttdeci">fourdst::logging::LogManager LogManager</div><div class="ttdef"><b>Definition</b> <a href="#l00161">network_file.h:161</a></div></div>
<div class="ttc" id="aclassgridfire_1_1io_1_1_m_e_s_a_network_file_parser_html_ab7f82597abf17f16c401bcdf528bd099"><div class="ttname"><a href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab7f82597abf17f16c401bcdf528bd099">gridfire::io::MESANetworkFileParser::m_filename</a></div><div class="ttdeci">std::string m_filename</div><div class="ttdef"><b>Definition</b> <a href="#l00165">network_file.h:165</a></div></div>
<div class="ttc" id="aclassgridfire_1_1io_1_1_m_e_s_a_network_file_parser_html_ab9c683289d48e58edf06bf59215b4937"><div class="ttname"><a href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab9c683289d48e58edf06bf59215b4937">gridfire::io::MESANetworkFileParser::m_logger</a></div><div class="ttdeci">quill::Logger * m_logger</div><div class="ttdef"><b>Definition</b> <a href="#l00163">network_file.h:163</a></div></div>
<div class="ttc" id="aclassgridfire_1_1io_1_1_m_e_s_a_network_file_parser_html_a84aa6894a331ad57bdab1e1ab85d4055"><div class="ttname"><a href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a84aa6894a331ad57bdab1e1ab85d4055">gridfire::io::MESANetworkFileParser::LogManager</a></div><div class="ttdeci">fourdst::logging::LogManager LogManager</div><div class="ttdef"><b>Definition</b> <a href="#l00145">network_file.h:145</a></div></div>
<div class="ttc" id="aclassgridfire_1_1io_1_1_m_e_s_a_network_file_parser_html_ab7f82597abf17f16c401bcdf528bd099"><div class="ttname"><a href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab7f82597abf17f16c401bcdf528bd099">gridfire::io::MESANetworkFileParser::m_filename</a></div><div class="ttdeci">std::string m_filename</div><div class="ttdef"><b>Definition</b> <a href="#l00149">network_file.h:149</a></div></div>
<div class="ttc" id="aclassgridfire_1_1io_1_1_m_e_s_a_network_file_parser_html_ab9c683289d48e58edf06bf59215b4937"><div class="ttname"><a href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab9c683289d48e58edf06bf59215b4937">gridfire::io::MESANetworkFileParser::m_logger</a></div><div class="ttdeci">quill::Logger * m_logger</div><div class="ttdef"><b>Definition</b> <a href="#l00147">network_file.h:147</a></div></div>
<div class="ttc" id="aclassgridfire_1_1io_1_1_m_e_s_a_network_file_parser_html_ac5963d0da6780de753df996b490f8d2c"><div class="ttname"><a href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ac5963d0da6780de753df996b490f8d2c">gridfire::io::MESANetworkFileParser::MESANetworkFileParser</a></div><div class="ttdeci">MESANetworkFileParser(const std::string &amp;filename)</div><div class="ttdoc">Constructs a MESANetworkFileParser.</div></div>
<div class="ttc" id="aclassgridfire_1_1io_1_1_m_e_s_a_network_file_parser_html_aea206c3a7600db8d657666fef88fa20d"><div class="ttname"><a href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#aea206c3a7600db8d657666fef88fa20d">gridfire::io::MESANetworkFileParser::m_config</a></div><div class="ttdeci">Config &amp; m_config</div><div class="ttdef"><b>Definition</b> <a href="#l00162">network_file.h:162</a></div></div>
<div class="ttc" id="aclassgridfire_1_1io_1_1_m_e_s_a_network_file_parser_html_af43ad8375abf1cedfdccc296b9958c2b"><div class="ttname"><a href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#af43ad8375abf1cedfdccc296b9958c2b">gridfire::io::MESANetworkFileParser::Config</a></div><div class="ttdeci">fourdst::config::Config Config</div><div class="ttdef"><b>Definition</b> <a href="#l00160">network_file.h:160</a></div></div>
<div class="ttc" id="aclassgridfire_1_1io_1_1_network_file_parser_html"><div class="ttname"><a href="classgridfire_1_1io_1_1_network_file_parser.html">gridfire::io::NetworkFileParser</a></div><div class="ttdoc">An abstract base class for network file parsers.</div><div class="ttdef"><b>Definition</b> <a href="#l00038">network_file.h:38</a></div></div>
<div class="ttc" id="aclassgridfire_1_1io_1_1_m_e_s_a_network_file_parser_html_aea206c3a7600db8d657666fef88fa20d"><div class="ttname"><a href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#aea206c3a7600db8d657666fef88fa20d">gridfire::io::MESANetworkFileParser::m_config</a></div><div class="ttdeci">Config &amp; m_config</div><div class="ttdef"><b>Definition</b> <a href="#l00146">network_file.h:146</a></div></div>
<div class="ttc" id="aclassgridfire_1_1io_1_1_m_e_s_a_network_file_parser_html_af43ad8375abf1cedfdccc296b9958c2b"><div class="ttname"><a href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#af43ad8375abf1cedfdccc296b9958c2b">gridfire::io::MESANetworkFileParser::Config</a></div><div class="ttdeci">fourdst::config::Config Config</div><div class="ttdef"><b>Definition</b> <a href="#l00144">network_file.h:144</a></div></div>
<div class="ttc" id="aclassgridfire_1_1io_1_1_network_file_parser_html"><div class="ttname"><a href="classgridfire_1_1io_1_1_network_file_parser.html">gridfire::io::NetworkFileParser</a></div><div class="ttdoc">An abstract base class for network file parsers.</div><div class="ttdef"><b>Definition</b> <a href="#l00022">network_file.h:22</a></div></div>
<div class="ttc" id="aclassgridfire_1_1io_1_1_network_file_parser_html_a66e8e724c903d6ef4dd1c8103276bdbf"><div class="ttname"><a href="classgridfire_1_1io_1_1_network_file_parser.html#a66e8e724c903d6ef4dd1c8103276bdbf">gridfire::io::NetworkFileParser::parse</a></div><div class="ttdeci">virtual ParsedNetworkData parse(const std::string &amp;filename) const =0</div><div class="ttdoc">Parses a network file and returns the parsed data.</div></div>
<div class="ttc" id="aclassgridfire_1_1io_1_1_network_file_parser_html_a9b4095d06fad5df3805c92ae97b3eab3"><div class="ttname"><a href="classgridfire_1_1io_1_1_network_file_parser.html#a9b4095d06fad5df3805c92ae97b3eab3">gridfire::io::NetworkFileParser::~NetworkFileParser</a></div><div class="ttdeci">virtual ~NetworkFileParser()=default</div><div class="ttdoc">Virtual destructor for the base class.</div></div>
<div class="ttc" id="aclassgridfire_1_1io_1_1_simple_reaction_list_file_parser_html_a4061e99bd77a3de0d6d9e317bfc74874"><div class="ttname"><a href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4061e99bd77a3de0d6d9e317bfc74874">gridfire::io::SimpleReactionListFileParser::m_config</a></div><div class="ttdeci">Config &amp; m_config</div><div class="ttdef"><b>Definition</b> <a href="#l00122">network_file.h:122</a></div></div>
<div class="ttc" id="aclassgridfire_1_1io_1_1_simple_reaction_list_file_parser_html_a4061e99bd77a3de0d6d9e317bfc74874"><div class="ttname"><a href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4061e99bd77a3de0d6d9e317bfc74874">gridfire::io::SimpleReactionListFileParser::m_config</a></div><div class="ttdeci">Config &amp; m_config</div><div class="ttdef"><b>Definition</b> <a href="#l00106">network_file.h:106</a></div></div>
<div class="ttc" id="aclassgridfire_1_1io_1_1_simple_reaction_list_file_parser_html_a4df01e3a93e1291d2cde0458545325f8"><div class="ttname"><a href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4df01e3a93e1291d2cde0458545325f8">gridfire::io::SimpleReactionListFileParser::parse</a></div><div class="ttdeci">ParsedNetworkData parse(const std::string &amp;filename) const override</div><div class="ttdoc">Parses a simple reaction list file.</div><div class="ttdef"><b>Definition</b> <a href="network__file_8cpp_source.html#l00044">network_file.cpp:44</a></div></div>
<div class="ttc" id="aclassgridfire_1_1io_1_1_simple_reaction_list_file_parser_html_a6f8f9a1f54cd2be5ec66c3181be892de"><div class="ttname"><a href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a6f8f9a1f54cd2be5ec66c3181be892de">gridfire::io::SimpleReactionListFileParser::LogManager</a></div><div class="ttdeci">fourdst::logging::LogManager LogManager</div><div class="ttdef"><b>Definition</b> <a href="#l00121">network_file.h:121</a></div></div>
<div class="ttc" id="aclassgridfire_1_1io_1_1_simple_reaction_list_file_parser_html_acef7eafe3cbea159259f69c88d309b66"><div class="ttname"><a href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#acef7eafe3cbea159259f69c88d309b66">gridfire::io::SimpleReactionListFileParser::m_logger</a></div><div class="ttdeci">quill::Logger * m_logger</div><div class="ttdef"><b>Definition</b> <a href="#l00123">network_file.h:123</a></div></div>
<div class="ttc" id="aclassgridfire_1_1io_1_1_simple_reaction_list_file_parser_html_ad913155a5a2a36b29e4ce4ca8d71c036"><div class="ttname"><a href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#ad913155a5a2a36b29e4ce4ca8d71c036">gridfire::io::SimpleReactionListFileParser::Config</a></div><div class="ttdeci">fourdst::config::Config Config</div><div class="ttdef"><b>Definition</b> <a href="#l00120">network_file.h:120</a></div></div>
<div class="ttc" id="aclassgridfire_1_1io_1_1_simple_reaction_list_file_parser_html_a6f8f9a1f54cd2be5ec66c3181be892de"><div class="ttname"><a href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a6f8f9a1f54cd2be5ec66c3181be892de">gridfire::io::SimpleReactionListFileParser::LogManager</a></div><div class="ttdeci">fourdst::logging::LogManager LogManager</div><div class="ttdef"><b>Definition</b> <a href="#l00105">network_file.h:105</a></div></div>
<div class="ttc" id="aclassgridfire_1_1io_1_1_simple_reaction_list_file_parser_html_acef7eafe3cbea159259f69c88d309b66"><div class="ttname"><a href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#acef7eafe3cbea159259f69c88d309b66">gridfire::io::SimpleReactionListFileParser::m_logger</a></div><div class="ttdeci">quill::Logger * m_logger</div><div class="ttdef"><b>Definition</b> <a href="#l00107">network_file.h:107</a></div></div>
<div class="ttc" id="aclassgridfire_1_1io_1_1_simple_reaction_list_file_parser_html_ad913155a5a2a36b29e4ce4ca8d71c036"><div class="ttname"><a href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#ad913155a5a2a36b29e4ce4ca8d71c036">gridfire::io::SimpleReactionListFileParser::Config</a></div><div class="ttdeci">fourdst::config::Config Config</div><div class="ttdef"><b>Definition</b> <a href="#l00104">network_file.h:104</a></div></div>
<div class="ttc" id="aclassgridfire_1_1io_1_1_simple_reaction_list_file_parser_html_afc8ed91e8c98205c505e3d9f0cff1993"><div class="ttname"><a href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#afc8ed91e8c98205c505e3d9f0cff1993">gridfire::io::SimpleReactionListFileParser::SimpleReactionListFileParser</a></div><div class="ttdeci">SimpleReactionListFileParser()</div><div class="ttdoc">Constructs a SimpleReactionListFileParser.</div><div class="ttdef"><b>Definition</b> <a href="network__file_8cpp_source.html#l00042">network_file.cpp:42</a></div></div>
<div class="ttc" id="anamespacegridfire_1_1io_html"><div class="ttname"><a href="namespacegridfire_1_1io.html">gridfire::io</a></div><div class="ttdef"><b>Definition</b> <a href="#l00011">network_file.h:11</a></div></div>
<div class="ttc" id="astructgridfire_1_1io_1_1_parsed_network_data_html"><div class="ttname"><a href="structgridfire_1_1io_1_1_parsed_network_data.html">gridfire::io::ParsedNetworkData</a></div><div class="ttdoc">Holds the data parsed from a network file.</div><div class="ttdef"><b>Definition</b> <a href="#l00020">network_file.h:20</a></div></div>
<div class="ttc" id="astructgridfire_1_1io_1_1_parsed_network_data_html_a5145c672877638e6113abf1f719b246d"><div class="ttname"><a href="structgridfire_1_1io_1_1_parsed_network_data.html#a5145c672877638e6113abf1f719b246d">gridfire::io::ParsedNetworkData::reactionPENames</a></div><div class="ttdeci">std::vector&lt; std::string &gt; reactionPENames</div><div class="ttdoc">A vector of reaction names in their PEN-style format.</div><div class="ttdef"><b>Definition</b> <a href="#l00027">network_file.h:27</a></div></div>
<div class="ttc" id="anamespacegridfire_1_1io_html_abcbdcbd13cfa8c9fbe1b48e8ee2cc352"><div class="ttname"><a href="namespacegridfire_1_1io.html#abcbdcbd13cfa8c9fbe1b48e8ee2cc352">gridfire::io::ParsedNetworkData</a></div><div class="ttdeci">std::vector&lt; std::string &gt; ParsedNetworkData</div><div class="ttdef"><b>Definition</b> <a href="#l00012">network_file.h:12</a></div></div>
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