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<div class="headertitle"><div class="title">bindings.cpp</div></div>
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<a href="engine_2bindings_8cpp.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a id="l00001" name="l00001"></a><span class="lineno"> 1</span><span class="preprocessor">#include <pybind11/pybind11.h></span></div>
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<div class="line"><a id="l00002" name="l00002"></a><span class="lineno"> 2</span><span class="preprocessor">#include <pybind11/stl.h></span> <span class="comment">// Needed for vectors, maps, sets, strings</span></div>
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<div class="line"><a id="l00003" name="l00003"></a><span class="lineno"> 3</span><span class="preprocessor">#include <pybind11/stl_bind.h></span> <span class="comment">// Needed for binding std::vector, std::map etc if needed directly</span></div>
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<div class="line"><a id="l00004" name="l00004"></a><span class="lineno"> 4</span> </div>
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<div class="line"><a id="l00005" name="l00005"></a><span class="lineno"> 5</span><span class="preprocessor">#include <iostream></span></div>
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<div class="line"><a id="l00006" name="l00006"></a><span class="lineno"> 6</span> </div>
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<div class="line"><a id="l00007" name="l00007"></a><span class="lineno"> 7</span><span class="preprocessor">#include "<a class="code" href="engine_2bindings_8h.html">bindings.h</a>"</span></div>
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<div class="line"><a id="l00008" name="l00008"></a><span class="lineno"> 8</span> </div>
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<div class="line"><a id="l00009" name="l00009"></a><span class="lineno"> 9</span><span class="preprocessor">#include "<a class="code" href="engine_8h.html">gridfire/engine/engine.h</a>"</span></div>
|
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<div class="line"><a id="l00010" name="l00010"></a><span class="lineno"> 10</span><span class="preprocessor">#include "<a class="code" href="py__engine_8h.html">trampoline/py_engine.h</a>"</span></div>
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<div class="line"><a id="l00011" name="l00011"></a><span class="lineno"> 11</span> </div>
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||||
<div class="line"><a id="l00012" name="l00012"></a><span class="lineno"> 12</span> </div>
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||||
<div class="line"><a id="l00013" name="l00013"></a><span class="lineno"> 13</span> </div>
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<div class="line"><a id="l00014" name="l00014"></a><span class="lineno"> 14</span><span class="keyword">namespace </span>py = pybind11;</div>
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||||
<div class="line"><a id="l00015" name="l00015"></a><span class="lineno"> 15</span> </div>
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||||
<div class="line"><a id="l00016" name="l00016"></a><span class="lineno"> 16</span><span class="keyword">namespace </span>{</div>
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||||
<div class="line"><a id="l00017" name="l00017"></a><span class="lineno"> 17</span> <span class="keyword">template</span> <<span class="keyword">typename</span> T></div>
|
||||
<div class="line"><a id="l00018" name="l00018"></a><span class="lineno"><a class="line" href="concept_0d012022023301355052304263320136165002200160012126_1_1_is_dynamic_engine.html"> 18</a></span> <span class="keyword">concept </span><a class="code hl_concept" href="concept_0d012022023301355052304263320136165002200160012126_1_1_is_dynamic_engine.html">IsDynamicEngine</a> = std::is_base_of_v<gridfire::DynamicEngine, T>;</div>
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||||
<div class="line"><a id="l00019" name="l00019"></a><span class="lineno"> 19</span> </div>
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<div class="line"><a id="l00020" name="l00020"></a><span class="lineno"> 20</span> <span class="keyword">template</span> <IsDynamicEngine T, IsDynamicEngine BaseT></div>
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<div class="line"><a id="l00021" name="l00021"></a><span class="lineno"> 21</span> <span class="keywordtype">void</span> registerDynamicEngineDefs(py::class_<T, BaseT> pyClass) {</div>
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||||
<div class="line"><a id="l00022" name="l00022"></a><span class="lineno"> 22</span> pyClass.def(<span class="stringliteral">"calculateRHSAndEnergy"</span>, &T::calculateRHSAndEnergy,</div>
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||||
<div class="line"><a id="l00023" name="l00023"></a><span class="lineno"> 23</span> py::arg(<span class="stringliteral">"Y"</span>),</div>
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||||
<div class="line"><a id="l00024" name="l00024"></a><span class="lineno"> 24</span> py::arg(<span class="stringliteral">"T9"</span>),</div>
|
||||
<div class="line"><a id="l00025" name="l00025"></a><span class="lineno"> 25</span> py::arg(<span class="stringliteral">"rho"</span>),</div>
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||||
<div class="line"><a id="l00026" name="l00026"></a><span class="lineno"> 26</span> <span class="stringliteral">"Calculate the right-hand side (dY/dt) and energy generation rate."</span></div>
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||||
<div class="line"><a id="l00027" name="l00027"></a><span class="lineno"> 27</span> )</div>
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||||
<div class="line"><a id="l00028" name="l00028"></a><span class="lineno"> 28</span> .def(<span class="stringliteral">"generateJacobianMatrix"</span>, py::overload_cast<<span class="keyword">const</span> std::vector<double>&, <span class="keywordtype">double</span>, <span class="keywordtype">double</span>>(&T::generateJacobianMatrix, py::const_),</div>
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||||
<div class="line"><a id="l00029" name="l00029"></a><span class="lineno"> 29</span> py::arg(<span class="stringliteral">"Y_dynamic"</span>),</div>
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||||
<div class="line"><a id="l00030" name="l00030"></a><span class="lineno"> 30</span> py::arg(<span class="stringliteral">"T9"</span>),</div>
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||||
<div class="line"><a id="l00031" name="l00031"></a><span class="lineno"> 31</span> py::arg(<span class="stringliteral">"rho"</span>),</div>
|
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<div class="line"><a id="l00032" name="l00032"></a><span class="lineno"> 32</span> <span class="stringliteral">"Generate the Jacobian matrix for the current state."</span></div>
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||||
<div class="line"><a id="l00033" name="l00033"></a><span class="lineno"> 33</span> )</div>
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||||
<div class="line"><a id="l00034" name="l00034"></a><span class="lineno"> 34</span> .def(<span class="stringliteral">"generateStoichiometryMatrix"</span>, &T::generateStoichiometryMatrix)</div>
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||||
<div class="line"><a id="l00035" name="l00035"></a><span class="lineno"> 35</span> .def(<span class="stringliteral">"calculateMolarReactionFlow"</span>,</div>
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||||
<div class="line"><a id="l00036" name="l00036"></a><span class="lineno"> 36</span> <span class="keyword">static_cast<</span><span class="keywordtype">double</span> (T::*)(<span class="keyword">const </span><a class="code hl_class" href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a>&, <span class="keyword">const </span>std::vector<double>&, <span class="keyword">const </span><span class="keywordtype">double</span>, <span class="keyword">const </span><span class="keywordtype">double</span>) const<span class="keyword">></span>(&T::calculateMolarReactionFlow),</div>
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||||
<div class="line"><a id="l00037" name="l00037"></a><span class="lineno"> 37</span> py::arg(<span class="stringliteral">"reaction"</span>),</div>
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<div class="line"><a id="l00038" name="l00038"></a><span class="lineno"> 38</span> py::arg(<span class="stringliteral">"Y"</span>),</div>
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||||
<div class="line"><a id="l00039" name="l00039"></a><span class="lineno"> 39</span> py::arg(<span class="stringliteral">"T9"</span>),</div>
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||||
<div class="line"><a id="l00040" name="l00040"></a><span class="lineno"> 40</span> py::arg(<span class="stringliteral">"rho"</span>),</div>
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<div class="line"><a id="l00041" name="l00041"></a><span class="lineno"> 41</span> <span class="stringliteral">"Calculate the molar reaction flow for a given reaction."</span></div>
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||||
<div class="line"><a id="l00042" name="l00042"></a><span class="lineno"> 42</span> )</div>
|
||||
<div class="line"><a id="l00043" name="l00043"></a><span class="lineno"> 43</span> .def(<span class="stringliteral">"getNetworkSpecies"</span>, &T::getNetworkSpecies,</div>
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||||
<div class="line"><a id="l00044" name="l00044"></a><span class="lineno"> 44</span> <span class="stringliteral">"Get the list of species in the network."</span></div>
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||||
<div class="line"><a id="l00045" name="l00045"></a><span class="lineno"> 45</span> )</div>
|
||||
<div class="line"><a id="l00046" name="l00046"></a><span class="lineno"> 46</span> .def(<span class="stringliteral">"getNetworkReactions"</span>, &T::getNetworkReactions,</div>
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<div class="line"><a id="l00047" name="l00047"></a><span class="lineno"> 47</span> <span class="stringliteral">"Get the set of logical reactions in the network."</span></div>
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||||
<div class="line"><a id="l00048" name="l00048"></a><span class="lineno"> 48</span> )</div>
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||||
<div class="line"><a id="l00049" name="l00049"></a><span class="lineno"> 49</span> .def (<span class="stringliteral">"setNetworkReactions"</span>, &T::setNetworkReactions,</div>
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||||
<div class="line"><a id="l00050" name="l00050"></a><span class="lineno"> 50</span> py::arg(<span class="stringliteral">"reactions"</span>),</div>
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||||
<div class="line"><a id="l00051" name="l00051"></a><span class="lineno"> 51</span> <span class="stringliteral">"Set the network reactions to a new set of reactions."</span></div>
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||||
<div class="line"><a id="l00052" name="l00052"></a><span class="lineno"> 52</span> )</div>
|
||||
<div class="line"><a id="l00053" name="l00053"></a><span class="lineno"> 53</span> .def(<span class="stringliteral">"getJacobianMatrixEntry"</span>, &T::getJacobianMatrixEntry,</div>
|
||||
<div class="line"><a id="l00054" name="l00054"></a><span class="lineno"> 54</span> py::arg(<span class="stringliteral">"i"</span>),</div>
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||||
<div class="line"><a id="l00055" name="l00055"></a><span class="lineno"> 55</span> py::arg(<span class="stringliteral">"j"</span>),</div>
|
||||
<div class="line"><a id="l00056" name="l00056"></a><span class="lineno"> 56</span> <span class="stringliteral">"Get an entry from the previously generated Jacobian matrix."</span></div>
|
||||
<div class="line"><a id="l00057" name="l00057"></a><span class="lineno"> 57</span> )</div>
|
||||
<div class="line"><a id="l00058" name="l00058"></a><span class="lineno"> 58</span> .def(<span class="stringliteral">"getStoichiometryMatrixEntry"</span>, &T::getStoichiometryMatrixEntry,</div>
|
||||
<div class="line"><a id="l00059" name="l00059"></a><span class="lineno"> 59</span> py::arg(<span class="stringliteral">"speciesIndex"</span>),</div>
|
||||
<div class="line"><a id="l00060" name="l00060"></a><span class="lineno"> 60</span> py::arg(<span class="stringliteral">"reactionIndex"</span>),</div>
|
||||
<div class="line"><a id="l00061" name="l00061"></a><span class="lineno"> 61</span> <span class="stringliteral">"Get an entry from the stoichiometry matrix."</span></div>
|
||||
<div class="line"><a id="l00062" name="l00062"></a><span class="lineno"> 62</span> )</div>
|
||||
<div class="line"><a id="l00063" name="l00063"></a><span class="lineno"> 63</span> .def(<span class="stringliteral">"getSpeciesTimescales"</span>, &T::getSpeciesTimescales,</div>
|
||||
<div class="line"><a id="l00064" name="l00064"></a><span class="lineno"> 64</span> py::arg(<span class="stringliteral">"Y"</span>),</div>
|
||||
<div class="line"><a id="l00065" name="l00065"></a><span class="lineno"> 65</span> py::arg(<span class="stringliteral">"T9"</span>),</div>
|
||||
<div class="line"><a id="l00066" name="l00066"></a><span class="lineno"> 66</span> py::arg(<span class="stringliteral">"rho"</span>),</div>
|
||||
<div class="line"><a id="l00067" name="l00067"></a><span class="lineno"> 67</span> <span class="stringliteral">"Get the timescales for each species in the network."</span></div>
|
||||
<div class="line"><a id="l00068" name="l00068"></a><span class="lineno"> 68</span> )</div>
|
||||
<div class="line"><a id="l00069" name="l00069"></a><span class="lineno"> 69</span> .def(<span class="stringliteral">"getSpeciesDestructionTimescales"</span>, &T::getSpeciesDestructionTimescales,</div>
|
||||
<div class="line"><a id="l00070" name="l00070"></a><span class="lineno"> 70</span> py::arg(<span class="stringliteral">"Y"</span>),</div>
|
||||
<div class="line"><a id="l00071" name="l00071"></a><span class="lineno"> 71</span> py::arg(<span class="stringliteral">"T9"</span>),</div>
|
||||
<div class="line"><a id="l00072" name="l00072"></a><span class="lineno"> 72</span> py::arg(<span class="stringliteral">"rho"</span>),</div>
|
||||
<div class="line"><a id="l00073" name="l00073"></a><span class="lineno"> 73</span> <span class="stringliteral">"Get the destruction timescales for each species in the network."</span></div>
|
||||
<div class="line"><a id="l00074" name="l00074"></a><span class="lineno"> 74</span> )</div>
|
||||
<div class="line"><a id="l00075" name="l00075"></a><span class="lineno"> 75</span> .def(<span class="stringliteral">"update"</span>, &T::update,</div>
|
||||
<div class="line"><a id="l00076" name="l00076"></a><span class="lineno"> 76</span> py::arg(<span class="stringliteral">"netIn"</span>),</div>
|
||||
<div class="line"><a id="l00077" name="l00077"></a><span class="lineno"> 77</span> <span class="stringliteral">"Update the engine state based on the provided NetIn object."</span></div>
|
||||
<div class="line"><a id="l00078" name="l00078"></a><span class="lineno"> 78</span> )</div>
|
||||
<div class="line"><a id="l00079" name="l00079"></a><span class="lineno"> 79</span> .def(<span class="stringliteral">"setScreeningModel"</span>, &T::setScreeningModel,</div>
|
||||
<div class="line"><a id="l00080" name="l00080"></a><span class="lineno"> 80</span> py::arg(<span class="stringliteral">"screeningModel"</span>),</div>
|
||||
<div class="line"><a id="l00081" name="l00081"></a><span class="lineno"> 81</span> <span class="stringliteral">"Set the screening model for the engine."</span></div>
|
||||
<div class="line"><a id="l00082" name="l00082"></a><span class="lineno"> 82</span> )</div>
|
||||
<div class="line"><a id="l00083" name="l00083"></a><span class="lineno"> 83</span> .def(<span class="stringliteral">"getScreeningModel"</span>, &T::getScreeningModel,</div>
|
||||
<div class="line"><a id="l00084" name="l00084"></a><span class="lineno"> 84</span> <span class="stringliteral">"Get the current screening model of the engine."</span></div>
|
||||
<div class="line"><a id="l00085" name="l00085"></a><span class="lineno"> 85</span> )</div>
|
||||
<div class="line"><a id="l00086" name="l00086"></a><span class="lineno"> 86</span> .def(<span class="stringliteral">"getSpeciesIndex"</span>, &T::getSpeciesIndex,</div>
|
||||
<div class="line"><a id="l00087" name="l00087"></a><span class="lineno"> 87</span> py::arg(<span class="stringliteral">"species"</span>),</div>
|
||||
<div class="line"><a id="l00088" name="l00088"></a><span class="lineno"> 88</span> <span class="stringliteral">"Get the index of a species in the network."</span></div>
|
||||
<div class="line"><a id="l00089" name="l00089"></a><span class="lineno"> 89</span> )</div>
|
||||
<div class="line"><a id="l00090" name="l00090"></a><span class="lineno"> 90</span> .def(<span class="stringliteral">"mapNetInToMolarAbundanceVector"</span>, &T::mapNetInToMolarAbundanceVector,</div>
|
||||
<div class="line"><a id="l00091" name="l00091"></a><span class="lineno"> 91</span> py::arg(<span class="stringliteral">"netIn"</span>),</div>
|
||||
<div class="line"><a id="l00092" name="l00092"></a><span class="lineno"> 92</span> <span class="stringliteral">"Map a NetIn object to a vector of molar abundances."</span></div>
|
||||
<div class="line"><a id="l00093" name="l00093"></a><span class="lineno"> 93</span> )</div>
|
||||
<div class="line"><a id="l00094" name="l00094"></a><span class="lineno"> 94</span> .def(<span class="stringliteral">"primeEngine"</span>, &T::primeEngine,</div>
|
||||
<div class="line"><a id="l00095" name="l00095"></a><span class="lineno"> 95</span> py::arg(<span class="stringliteral">"netIn"</span>),</div>
|
||||
<div class="line"><a id="l00096" name="l00096"></a><span class="lineno"> 96</span> <span class="stringliteral">"Prime the engine with a NetIn object to prepare for calculations."</span></div>
|
||||
<div class="line"><a id="l00097" name="l00097"></a><span class="lineno"> 97</span> )</div>
|
||||
<div class="line"><a id="l00098" name="l00098"></a><span class="lineno"> 98</span> .def(<span class="stringliteral">"getDepth"</span>, &T::getDepth,</div>
|
||||
<div class="line"><a id="l00099" name="l00099"></a><span class="lineno"> 99</span> <span class="stringliteral">"Get the current build depth of the engine."</span></div>
|
||||
<div class="line"><a id="l00100" name="l00100"></a><span class="lineno"> 100</span> )</div>
|
||||
<div class="line"><a id="l00101" name="l00101"></a><span class="lineno"> 101</span> .def(<span class="stringliteral">"rebuild"</span>, &T::rebuild,</div>
|
||||
<div class="line"><a id="l00102" name="l00102"></a><span class="lineno"> 102</span> py::arg(<span class="stringliteral">"composition"</span>),</div>
|
||||
<div class="line"><a id="l00103" name="l00103"></a><span class="lineno"> 103</span> py::arg(<span class="stringliteral">"depth"</span>) = <a class="code hl_enumvalue" href="namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57abbd47109890259c0127154db1af26c75">gridfire::NetworkBuildDepth::Full</a>,</div>
|
||||
<div class="line"><a id="l00104" name="l00104"></a><span class="lineno"> 104</span> <span class="stringliteral">"Rebuild the engine with a new composition and build depth."</span></div>
|
||||
<div class="line"><a id="l00105" name="l00105"></a><span class="lineno"> 105</span> )</div>
|
||||
<div class="line"><a id="l00106" name="l00106"></a><span class="lineno"> 106</span> .def(<span class="stringliteral">"isStale"</span>, &T::isStale,</div>
|
||||
<div class="line"><a id="l00107" name="l00107"></a><span class="lineno"> 107</span> py::arg(<span class="stringliteral">"netIn"</span>),</div>
|
||||
<div class="line"><a id="l00108" name="l00108"></a><span class="lineno"> 108</span> <span class="stringliteral">"Check if the engine is stale based on the provided NetIn object."</span></div>
|
||||
<div class="line"><a id="l00109" name="l00109"></a><span class="lineno"> 109</span> );</div>
|
||||
<div class="line"><a id="l00110" name="l00110"></a><span class="lineno"> 110</span> </div>
|
||||
<div class="line"><a id="l00111" name="l00111"></a><span class="lineno"> 111</span> }</div>
|
||||
<div class="line"><a id="l00112" name="l00112"></a><span class="lineno"> 112</span>}</div>
|
||||
<div class="line"><a id="l00113" name="l00113"></a><span class="lineno"> 113</span> </div>
|
||||
<div class="foldopen" id="foldopen00114" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00114" name="l00114"></a><span class="lineno"><a class="line" href="engine_2bindings_8cpp.html#ac2df9cd0e71d39b97ddd47b3e7024b0c"> 114</a></span><span class="keywordtype">void</span> <a class="code hl_function" href="engine_2bindings_8cpp.html#ac2df9cd0e71d39b97ddd47b3e7024b0c">register_engine_bindings</a>(py::module &m) {</div>
|
||||
<div class="line"><a id="l00115" name="l00115"></a><span class="lineno"> 115</span> <a class="code hl_function" href="engine_2bindings_8cpp.html#a884aac3c3f2e8c62843c69329052d642">register_base_engine_bindings</a>(m);</div>
|
||||
<div class="line"><a id="l00116" name="l00116"></a><span class="lineno"> 116</span> <a class="code hl_function" href="engine_2bindings_8cpp.html#a74a027923ac27f235cf565f8d2a355bd">register_engine_view_bindings</a>(m);</div>
|
||||
<div class="line"><a id="l00117" name="l00117"></a><span class="lineno"> 117</span> </div>
|
||||
<div class="line"><a id="l00118" name="l00118"></a><span class="lineno"> 118</span> m.def(<span class="stringliteral">"build_reaclib_nuclear_network"</span>, &<a class="code hl_function" href="namespacegridfire.html#aedddb89e400a6111f69bfe0c3fd4214e">gridfire::build_reaclib_nuclear_network</a>,</div>
|
||||
<div class="line"><a id="l00119" name="l00119"></a><span class="lineno"> 119</span> py::arg(<span class="stringliteral">"composition"</span>),</div>
|
||||
<div class="line"><a id="l00120" name="l00120"></a><span class="lineno"> 120</span> py::arg(<span class="stringliteral">"maxLayers"</span>) = <a class="code hl_enumvalue" href="namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57abbd47109890259c0127154db1af26c75">gridfire::NetworkBuildDepth::Full</a>,</div>
|
||||
<div class="line"><a id="l00121" name="l00121"></a><span class="lineno"> 121</span> py::arg(<span class="stringliteral">"reverse"</span>) = <span class="keyword">false</span>,</div>
|
||||
<div class="line"><a id="l00122" name="l00122"></a><span class="lineno"> 122</span> <span class="stringliteral">"Build a nuclear network from a composition using ReacLib data."</span></div>
|
||||
<div class="line"><a id="l00123" name="l00123"></a><span class="lineno"> 123</span> );</div>
|
||||
<div class="line"><a id="l00124" name="l00124"></a><span class="lineno"> 124</span> </div>
|
||||
<div class="line"><a id="l00125" name="l00125"></a><span class="lineno"> 125</span> py::enum_<gridfire::PrimingReportStatus>(m, <span class="stringliteral">"PrimingReportStatus"</span>)</div>
|
||||
<div class="line"><a id="l00126" name="l00126"></a><span class="lineno"> 126</span> .value(<span class="stringliteral">"FULL_SUCCESS"</span>, <a class="code hl_enumvalue" href="namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a64d98633bac1de0eb2a539cbfd2a5c2a">gridfire::PrimingReportStatus::FULL_SUCCESS</a>, <span class="stringliteral">"Priming was full successful."</span>)</div>
|
||||
<div class="line"><a id="l00127" name="l00127"></a><span class="lineno"> 127</span> .value(<span class="stringliteral">"NO_SPECIES_TO_PRIME"</span>, <a class="code hl_enumvalue" href="namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a708c14ec56942aa5f32e7bef1e29db45">gridfire::PrimingReportStatus::NO_SPECIES_TO_PRIME</a>, <span class="stringliteral">"No species to prime."</span>)</div>
|
||||
<div class="line"><a id="l00128" name="l00128"></a><span class="lineno"> 128</span> .value(<span class="stringliteral">"MAX_ITERATIONS_REACHED"</span>, <a class="code hl_enumvalue" href="namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a5afaf45bc4c02208d502d9c0c26d8287">gridfire::PrimingReportStatus::MAX_ITERATIONS_REACHED</a>, <span class="stringliteral">"Maximum iterations reached during priming."</span>)</div>
|
||||
<div class="line"><a id="l00129" name="l00129"></a><span class="lineno"> 129</span> .value(<span class="stringliteral">"FAILED_TO_FINALIZE_COMPOSITION"</span>, <a class="code hl_enumvalue" href="namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154ae8870a753743b62c511c939eef95c93f">gridfire::PrimingReportStatus::FAILED_TO_FINALIZE_COMPOSITION</a>, <span class="stringliteral">"Failed to finalize the composition after priming."</span>)</div>
|
||||
<div class="line"><a id="l00130" name="l00130"></a><span class="lineno"> 130</span> .value(<span class="stringliteral">"FAILED_TO_FIND_CREATION_CHANNEL"</span>, <a class="code hl_enumvalue" href="namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a9870268bdece09274aea75557a19158a">gridfire::PrimingReportStatus::FAILED_TO_FIND_CREATION_CHANNEL</a>, <span class="stringliteral">"Failed to find a creation channel for the priming species."</span>)</div>
|
||||
<div class="line"><a id="l00131" name="l00131"></a><span class="lineno"> 131</span> .value(<span class="stringliteral">"FAILED_TO_FIND_PRIMING_REACTIONS"</span>, <a class="code hl_enumvalue" href="namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a186367e42446c004076290ca7913d931">gridfire::PrimingReportStatus::FAILED_TO_FIND_PRIMING_REACTIONS</a>, <span class="stringliteral">"Failed to find priming reactions for the species."</span>)</div>
|
||||
<div class="line"><a id="l00132" name="l00132"></a><span class="lineno"> 132</span> .value(<span class="stringliteral">"BASE_NETWORK_TOO_SHALLOW"</span>, <a class="code hl_enumvalue" href="namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154ab837953f2841baabbae6bb5f2e43e71e">gridfire::PrimingReportStatus::BASE_NETWORK_TOO_SHALLOW</a>, <span class="stringliteral">"The base network is too shallow for priming."</span>)</div>
|
||||
<div class="line"><a id="l00133" name="l00133"></a><span class="lineno"> 133</span> .export_values()</div>
|
||||
<div class="line"><a id="l00134" name="l00134"></a><span class="lineno"> 134</span> .def(<span class="stringliteral">"__repr__"</span>, [](<span class="keyword">const</span> <a class="code hl_enumeration" href="namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154">gridfire::PrimingReportStatus</a>& status) {</div>
|
||||
<div class="line"><a id="l00135" name="l00135"></a><span class="lineno"> 135</span> std::stringstream ss;</div>
|
||||
<div class="line"><a id="l00136" name="l00136"></a><span class="lineno"> 136</span> ss << <a class="code hl_variable" href="namespacegridfire.html#a02be158966bf82a91b159b7a962c3fa5">gridfire::PrimingReportStatusStrings</a>.at(status) << <span class="stringliteral">"\n"</span>;</div>
|
||||
<div class="line"><a id="l00137" name="l00137"></a><span class="lineno"> 137</span> <span class="keywordflow">return</span> ss.str();</div>
|
||||
<div class="line"><a id="l00138" name="l00138"></a><span class="lineno"> 138</span> },</div>
|
||||
<div class="line"><a id="l00139" name="l00139"></a><span class="lineno"> 139</span> <span class="stringliteral">"String representation of the PrimingReport."</span></div>
|
||||
<div class="line"><a id="l00140" name="l00140"></a><span class="lineno"> 140</span> );</div>
|
||||
<div class="line"><a id="l00141" name="l00141"></a><span class="lineno"> 141</span> </div>
|
||||
<div class="line"><a id="l00142" name="l00142"></a><span class="lineno"> 142</span> py::class_<gridfire::PrimingReport>(m, <span class="stringliteral">"PrimingReport"</span>)</div>
|
||||
<div class="line"><a id="l00143" name="l00143"></a><span class="lineno"> 143</span> .def_readonly(<span class="stringliteral">"success"</span>, &<a class="code hl_variable" href="structgridfire_1_1_priming_report.html#afa4dd791ddd9df84039554524b681fb3">gridfire::PrimingReport::success</a>, <span class="stringliteral">"Indicates if the priming was successful."</span>)</div>
|
||||
<div class="line"><a id="l00144" name="l00144"></a><span class="lineno"> 144</span> .def_readonly(<span class="stringliteral">"massFractionChanges"</span>, &<a class="code hl_variable" href="structgridfire_1_1_priming_report.html#a37aa83b55f3da0bc3ff6bcb7b79878a7">gridfire::PrimingReport::massFractionChanges</a>, <span class="stringliteral">"Map of species to their mass fraction changes after priming."</span>)</div>
|
||||
<div class="line"><a id="l00145" name="l00145"></a><span class="lineno"> 145</span> .def_readonly(<span class="stringliteral">"primedComposition"</span>, &<a class="code hl_variable" href="structgridfire_1_1_priming_report.html#a15032fd3354bd8fb383e13929bbd0ceb">gridfire::PrimingReport::primedComposition</a>, <span class="stringliteral">"The composition after priming."</span>)</div>
|
||||
<div class="line"><a id="l00146" name="l00146"></a><span class="lineno"> 146</span> .def_readonly(<span class="stringliteral">"status"</span>, &<a class="code hl_variable" href="structgridfire_1_1_priming_report.html#a5fec4b465afb4f2d9bc30cd1cab1b50d">gridfire::PrimingReport::status</a>, <span class="stringliteral">"Status message from the priming process."</span>)</div>
|
||||
<div class="line"><a id="l00147" name="l00147"></a><span class="lineno"> 147</span> .def(<span class="stringliteral">"__repr__"</span>, [](<span class="keyword">const</span> <a class="code hl_struct" href="structgridfire_1_1_priming_report.html">gridfire::PrimingReport</a>& report) {</div>
|
||||
<div class="line"><a id="l00148" name="l00148"></a><span class="lineno"> 148</span> std::stringstream ss;</div>
|
||||
<div class="line"><a id="l00149" name="l00149"></a><span class="lineno"> 149</span> ss << report;</div>
|
||||
<div class="line"><a id="l00150" name="l00150"></a><span class="lineno"> 150</span> <span class="keywordflow">return</span> ss.str();</div>
|
||||
<div class="line"><a id="l00151" name="l00151"></a><span class="lineno"> 151</span> }</div>
|
||||
<div class="line"><a id="l00152" name="l00152"></a><span class="lineno"> 152</span> );</div>
|
||||
<div class="line"><a id="l00153" name="l00153"></a><span class="lineno"> 153</span>}</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00154" name="l00154"></a><span class="lineno"> 154</span> </div>
|
||||
<div class="foldopen" id="foldopen00155" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00155" name="l00155"></a><span class="lineno"><a class="line" href="engine_2bindings_8cpp.html#a884aac3c3f2e8c62843c69329052d642"> 155</a></span><span class="keywordtype">void</span> <a class="code hl_function" href="engine_2bindings_8cpp.html#a884aac3c3f2e8c62843c69329052d642">register_base_engine_bindings</a>(pybind11::module &m) {</div>
|
||||
<div class="line"><a id="l00156" name="l00156"></a><span class="lineno"> 156</span> </div>
|
||||
<div class="line"><a id="l00157" name="l00157"></a><span class="lineno"> 157</span> py::class_<gridfire::StepDerivatives<double>>(m, <span class="stringliteral">"StepDerivatives"</span>)</div>
|
||||
<div class="line"><a id="l00158" name="l00158"></a><span class="lineno"> 158</span> .def_readonly(<span class="stringliteral">"dYdt"</span>, &<a class="code hl_variable" href="structgridfire_1_1_step_derivatives.html#ae0de268b86c2404379409c4feae0b34d">gridfire::StepDerivatives<double>::dydt</a>, <span class="stringliteral">"The right-hand side (dY/dt) of the ODE system."</span>)</div>
|
||||
<div class="line"><a id="l00159" name="l00159"></a><span class="lineno"> 159</span> .def_readonly(<span class="stringliteral">"energy"</span>, &<a class="code hl_variable" href="structgridfire_1_1_step_derivatives.html#ab4aeb41be952c7b5844e1ee81fef9008">gridfire::StepDerivatives<double>::nuclearEnergyGenerationRate</a>, <span class="stringliteral">"The energy generation rate."</span>);</div>
|
||||
<div class="line"><a id="l00160" name="l00160"></a><span class="lineno"> 160</span> </div>
|
||||
<div class="line"><a id="l00161" name="l00161"></a><span class="lineno"> 161</span> py::class_<gridfire::SparsityPattern>(m, <span class="stringliteral">"SparsityPattern"</span>);</div>
|
||||
<div class="line"><a id="l00162" name="l00162"></a><span class="lineno"> 162</span> </div>
|
||||
<div class="line"><a id="l00163" name="l00163"></a><span class="lineno"> 163</span> <a class="code hl_function" href="engine_2bindings_8cpp.html#a01ff627d4ef6a21b3323cd383dd29841">abs_stype_register_engine_bindings</a>(m);</div>
|
||||
<div class="line"><a id="l00164" name="l00164"></a><span class="lineno"> 164</span> <a class="code hl_function" href="engine_2bindings_8cpp.html#a4066aaf2dca39ee1ed37ad53169f1cdf">abs_stype_register_dynamic_engine_bindings</a>(m);</div>
|
||||
<div class="line"><a id="l00165" name="l00165"></a><span class="lineno"> 165</span> <a class="code hl_function" href="engine_2bindings_8cpp.html#a61b016667b7477d898be2a2a5bc7cab8">con_stype_register_graph_engine_bindings</a>(m);</div>
|
||||
<div class="line"><a id="l00166" name="l00166"></a><span class="lineno"> 166</span>}</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00167" name="l00167"></a><span class="lineno"> 167</span> </div>
|
||||
<div class="foldopen" id="foldopen00168" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00168" name="l00168"></a><span class="lineno"><a class="line" href="engine_2bindings_8cpp.html#a01ff627d4ef6a21b3323cd383dd29841"> 168</a></span><span class="keywordtype">void</span> <a class="code hl_function" href="engine_2bindings_8cpp.html#a01ff627d4ef6a21b3323cd383dd29841">abs_stype_register_engine_bindings</a>(pybind11::module &m) {</div>
|
||||
<div class="line"><a id="l00169" name="l00169"></a><span class="lineno"> 169</span> py::class_<gridfire::Engine, PyEngine>(m, <span class="stringliteral">"Engine"</span>);</div>
|
||||
<div class="line"><a id="l00170" name="l00170"></a><span class="lineno"> 170</span>}</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00171" name="l00171"></a><span class="lineno"> 171</span> </div>
|
||||
<div class="foldopen" id="foldopen00172" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00172" name="l00172"></a><span class="lineno"><a class="line" href="engine_2bindings_8cpp.html#a4066aaf2dca39ee1ed37ad53169f1cdf"> 172</a></span><span class="keywordtype">void</span> <a class="code hl_function" href="engine_2bindings_8cpp.html#a4066aaf2dca39ee1ed37ad53169f1cdf">abs_stype_register_dynamic_engine_bindings</a>(pybind11::module &m) {</div>
|
||||
<div class="line"><a id="l00173" name="l00173"></a><span class="lineno"> 173</span> <span class="keyword">const</span> <span class="keyword">auto</span> a = py::class_<gridfire::DynamicEngine, PyDynamicEngine>(m, <span class="stringliteral">"DynamicEngine"</span>);</div>
|
||||
<div class="line"><a id="l00174" name="l00174"></a><span class="lineno"> 174</span>}</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00175" name="l00175"></a><span class="lineno"> 175</span> </div>
|
||||
<div class="foldopen" id="foldopen00176" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00176" name="l00176"></a><span class="lineno"><a class="line" href="engine_2bindings_8cpp.html#a61b016667b7477d898be2a2a5bc7cab8"> 176</a></span><span class="keywordtype">void</span> <a class="code hl_function" href="engine_2bindings_8cpp.html#a61b016667b7477d898be2a2a5bc7cab8">con_stype_register_graph_engine_bindings</a>(pybind11::module &m) {</div>
|
||||
<div class="line"><a id="l00177" name="l00177"></a><span class="lineno"> 177</span> py::enum_<gridfire::NetworkBuildDepth>(m, <span class="stringliteral">"NetworkBuildDepth"</span>)</div>
|
||||
<div class="line"><a id="l00178" name="l00178"></a><span class="lineno"> 178</span> .value(<span class="stringliteral">"Full"</span>, <a class="code hl_enumvalue" href="namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57abbd47109890259c0127154db1af26c75">gridfire::NetworkBuildDepth::Full</a>, <span class="stringliteral">"Full network build depth"</span>)</div>
|
||||
<div class="line"><a id="l00179" name="l00179"></a><span class="lineno"> 179</span> .value(<span class="stringliteral">"Shallow"</span>, <a class="code hl_enumvalue" href="namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a928d0f1285ee7d36c1c2fa1b1b7a164c">gridfire::NetworkBuildDepth::Shallow</a>, <span class="stringliteral">"Shallow network build depth"</span>)</div>
|
||||
<div class="line"><a id="l00180" name="l00180"></a><span class="lineno"> 180</span> .value(<span class="stringliteral">"SecondOrder"</span>, <a class="code hl_enumvalue" href="namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a264572d66aed5373d19dc80c7cde1f46">gridfire::NetworkBuildDepth::SecondOrder</a>, <span class="stringliteral">"Second order network build depth"</span>)</div>
|
||||
<div class="line"><a id="l00181" name="l00181"></a><span class="lineno"> 181</span> .value(<span class="stringliteral">"ThirdOrder"</span>, <a class="code hl_enumvalue" href="namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a3fc719e07f9f63e7f11a3d4fb74b476f">gridfire::NetworkBuildDepth::ThirdOrder</a>, <span class="stringliteral">"Third order network build depth"</span>)</div>
|
||||
<div class="line"><a id="l00182" name="l00182"></a><span class="lineno"> 182</span> .value(<span class="stringliteral">"FourthOrder"</span>, <a class="code hl_enumvalue" href="namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a100e3bf0197221c19b222badf42aa964">gridfire::NetworkBuildDepth::FourthOrder</a>, <span class="stringliteral">"Fourth order network build depth"</span>)</div>
|
||||
<div class="line"><a id="l00183" name="l00183"></a><span class="lineno"> 183</span> .value(<span class="stringliteral">"FifthOrder"</span>, <a class="code hl_enumvalue" href="namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a5105376c2b90747e00bed5bf2953dd56">gridfire::NetworkBuildDepth::FifthOrder</a>, <span class="stringliteral">"Fifth order network build depth"</span>)</div>
|
||||
<div class="line"><a id="l00184" name="l00184"></a><span class="lineno"> 184</span> .export_values();</div>
|
||||
<div class="line"><a id="l00185" name="l00185"></a><span class="lineno"> 185</span> </div>
|
||||
<div class="line"><a id="l00186" name="l00186"></a><span class="lineno"> 186</span> py::class_<gridfire::BuildDepthType>(m, <span class="stringliteral">"BuildDepthType"</span>);</div>
|
||||
<div class="line"><a id="l00187" name="l00187"></a><span class="lineno"> 187</span> </div>
|
||||
<div class="line"><a id="l00188" name="l00188"></a><span class="lineno"> 188</span> <span class="keyword">auto</span> py_dynamic_engine_bindings = py::class_<gridfire::GraphEngine, gridfire::DynamicEngine>(m, <span class="stringliteral">"GraphEngine"</span>);</div>
|
||||
<div class="line"><a id="l00189" name="l00189"></a><span class="lineno"> 189</span> </div>
|
||||
<div class="line"><a id="l00190" name="l00190"></a><span class="lineno"> 190</span> <span class="comment">// Register the Graph Engine Specific Bindings</span></div>
|
||||
<div class="line"><a id="l00191" name="l00191"></a><span class="lineno"> 191</span> py_dynamic_engine_bindings.def(py::init<const fourdst::composition::Composition &, const gridfire::BuildDepthType>(),</div>
|
||||
<div class="line"><a id="l00192" name="l00192"></a><span class="lineno"> 192</span> py::arg(<span class="stringliteral">"composition"</span>),</div>
|
||||
<div class="line"><a id="l00193" name="l00193"></a><span class="lineno"> 193</span> py::arg(<span class="stringliteral">"depth"</span>) = <a class="code hl_enumvalue" href="namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57abbd47109890259c0127154db1af26c75">gridfire::NetworkBuildDepth::Full</a>,</div>
|
||||
<div class="line"><a id="l00194" name="l00194"></a><span class="lineno"> 194</span> <span class="stringliteral">"Initialize GraphEngine with a composition and build depth."</span></div>
|
||||
<div class="line"><a id="l00195" name="l00195"></a><span class="lineno"> 195</span> );</div>
|
||||
<div class="line"><a id="l00196" name="l00196"></a><span class="lineno"> 196</span> py_dynamic_engine_bindings.def(py::init<const fourdst::composition::Composition &, const gridfire::partition::PartitionFunction &, const gridfire::BuildDepthType>(),</div>
|
||||
<div class="line"><a id="l00197" name="l00197"></a><span class="lineno"> 197</span> py::arg(<span class="stringliteral">"composition"</span>),</div>
|
||||
<div class="line"><a id="l00198" name="l00198"></a><span class="lineno"> 198</span> py::arg(<span class="stringliteral">"partitionFunction"</span>),</div>
|
||||
<div class="line"><a id="l00199" name="l00199"></a><span class="lineno"> 199</span> py::arg(<span class="stringliteral">"depth"</span>) = <a class="code hl_enumvalue" href="namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57abbd47109890259c0127154db1af26c75">gridfire::NetworkBuildDepth::Full</a>,</div>
|
||||
<div class="line"><a id="l00200" name="l00200"></a><span class="lineno"> 200</span> <span class="stringliteral">"Initialize GraphEngine with a composition, partition function and build depth."</span></div>
|
||||
<div class="line"><a id="l00201" name="l00201"></a><span class="lineno"> 201</span> );</div>
|
||||
<div class="line"><a id="l00202" name="l00202"></a><span class="lineno"> 202</span> py_dynamic_engine_bindings.def(py::init<const gridfire::reaction::LogicalReactionSet &>(),</div>
|
||||
<div class="line"><a id="l00203" name="l00203"></a><span class="lineno"> 203</span> py::arg(<span class="stringliteral">"reactions"</span>),</div>
|
||||
<div class="line"><a id="l00204" name="l00204"></a><span class="lineno"> 204</span> <span class="stringliteral">"Initialize GraphEngine with a set of reactions."</span></div>
|
||||
<div class="line"><a id="l00205" name="l00205"></a><span class="lineno"> 205</span> );</div>
|
||||
<div class="line"><a id="l00206" name="l00206"></a><span class="lineno"> 206</span> py_dynamic_engine_bindings.def(<span class="stringliteral">"generateJacobianMatrix"</span>, py::overload_cast<<span class="keyword">const</span> std::vector<double>&, <span class="keywordtype">double</span>, <span class="keywordtype">double</span>, <span class="keyword">const</span> <a class="code hl_typedef" href="namespacegridfire.html#a898dfe22579e649935645cbd6f073178">gridfire::SparsityPattern</a>&>(&<a class="code hl_function" href="classgridfire_1_1_graph_engine.html#ad049a295e2bb0f3e97b76d5742875119">gridfire::GraphEngine::generateJacobianMatrix</a>, py::const_),</div>
|
||||
<div class="line"><a id="l00207" name="l00207"></a><span class="lineno"> 207</span> py::arg(<span class="stringliteral">"Y_dynamic"</span>),</div>
|
||||
<div class="line"><a id="l00208" name="l00208"></a><span class="lineno"> 208</span> py::arg(<span class="stringliteral">"T9"</span>),</div>
|
||||
<div class="line"><a id="l00209" name="l00209"></a><span class="lineno"> 209</span> py::arg(<span class="stringliteral">"rho"</span>),</div>
|
||||
<div class="line"><a id="l00210" name="l00210"></a><span class="lineno"> 210</span> py::arg(<span class="stringliteral">"sparsityPattern"</span>),</div>
|
||||
<div class="line"><a id="l00211" name="l00211"></a><span class="lineno"> 211</span> <span class="stringliteral">"Generate the Jacobian matrix for the current state with a specified sparsity pattern."</span></div>
|
||||
<div class="line"><a id="l00212" name="l00212"></a><span class="lineno"> 212</span> );</div>
|
||||
<div class="line"><a id="l00213" name="l00213"></a><span class="lineno"> 213</span> py_dynamic_engine_bindings.def_static(<span class="stringliteral">"getNetReactionStoichiometry"</span>, &<a class="code hl_function" href="classgridfire_1_1_graph_engine.html#a8c29d8bbde407e913be5eb77efb2c0c9">gridfire::GraphEngine::getNetReactionStoichiometry</a>,</div>
|
||||
<div class="line"><a id="l00214" name="l00214"></a><span class="lineno"> 214</span> py::arg(<span class="stringliteral">"reaction"</span>),</div>
|
||||
<div class="line"><a id="l00215" name="l00215"></a><span class="lineno"> 215</span> <span class="stringliteral">"Get the net stoichiometry for a given reaction."</span></div>
|
||||
<div class="line"><a id="l00216" name="l00216"></a><span class="lineno"> 216</span> );</div>
|
||||
<div class="line"><a id="l00217" name="l00217"></a><span class="lineno"> 217</span> py_dynamic_engine_bindings.def(<span class="stringliteral">"involvesSpecies"</span>, &<a class="code hl_function" href="classgridfire_1_1_graph_engine.html#aa6202cee0c3c481eda77cc9a91bc126b">gridfire::GraphEngine::involvesSpecies</a>,</div>
|
||||
<div class="line"><a id="l00218" name="l00218"></a><span class="lineno"> 218</span> py::arg(<span class="stringliteral">"species"</span>),</div>
|
||||
<div class="line"><a id="l00219" name="l00219"></a><span class="lineno"> 219</span> <span class="stringliteral">"Check if a given species is involved in the network."</span></div>
|
||||
<div class="line"><a id="l00220" name="l00220"></a><span class="lineno"> 220</span> );</div>
|
||||
<div class="line"><a id="l00221" name="l00221"></a><span class="lineno"> 221</span> py_dynamic_engine_bindings.def(<span class="stringliteral">"exportToDot"</span>, &<a class="code hl_function" href="classgridfire_1_1_graph_engine.html#adac8c7d62bae76e17fc060e86dadd929">gridfire::GraphEngine::exportToDot</a>,</div>
|
||||
<div class="line"><a id="l00222" name="l00222"></a><span class="lineno"> 222</span> py::arg(<span class="stringliteral">"filename"</span>),</div>
|
||||
<div class="line"><a id="l00223" name="l00223"></a><span class="lineno"> 223</span> <span class="stringliteral">"Export the network to a DOT file for visualization."</span></div>
|
||||
<div class="line"><a id="l00224" name="l00224"></a><span class="lineno"> 224</span> );</div>
|
||||
<div class="line"><a id="l00225" name="l00225"></a><span class="lineno"> 225</span> py_dynamic_engine_bindings.def(<span class="stringliteral">"exportToCSV"</span>, &<a class="code hl_function" href="classgridfire_1_1_graph_engine.html#a832e2fe066381811a3e0464806ff5e95">gridfire::GraphEngine::exportToCSV</a>,</div>
|
||||
<div class="line"><a id="l00226" name="l00226"></a><span class="lineno"> 226</span> py::arg(<span class="stringliteral">"filename"</span>),</div>
|
||||
<div class="line"><a id="l00227" name="l00227"></a><span class="lineno"> 227</span> <span class="stringliteral">"Export the network to a CSV file for analysis."</span></div>
|
||||
<div class="line"><a id="l00228" name="l00228"></a><span class="lineno"> 228</span> );</div>
|
||||
<div class="line"><a id="l00229" name="l00229"></a><span class="lineno"> 229</span> py_dynamic_engine_bindings.def(<span class="stringliteral">"setPrecomputation"</span>, &<a class="code hl_function" href="classgridfire_1_1_graph_engine.html#a6c5410878496abc349ba30b691cdf0f1">gridfire::GraphEngine::setPrecomputation</a>,</div>
|
||||
<div class="line"><a id="l00230" name="l00230"></a><span class="lineno"> 230</span> py::arg(<span class="stringliteral">"precompute"</span>),</div>
|
||||
<div class="line"><a id="l00231" name="l00231"></a><span class="lineno"> 231</span> <span class="stringliteral">"Enable or disable precomputation for the engine."</span></div>
|
||||
<div class="line"><a id="l00232" name="l00232"></a><span class="lineno"> 232</span> );</div>
|
||||
<div class="line"><a id="l00233" name="l00233"></a><span class="lineno"> 233</span> py_dynamic_engine_bindings.def(<span class="stringliteral">"isPrecomputationEnabled"</span>, &<a class="code hl_function" href="classgridfire_1_1_graph_engine.html#a015f8975701f028c29835d3a9794e00f">gridfire::GraphEngine::isPrecomputationEnabled</a>,</div>
|
||||
<div class="line"><a id="l00234" name="l00234"></a><span class="lineno"> 234</span> <span class="stringliteral">"Check if precomputation is enabled for the engine."</span></div>
|
||||
<div class="line"><a id="l00235" name="l00235"></a><span class="lineno"> 235</span> );</div>
|
||||
<div class="line"><a id="l00236" name="l00236"></a><span class="lineno"> 236</span> py_dynamic_engine_bindings.def(<span class="stringliteral">"getPartitionFunction"</span>, &<a class="code hl_function" href="classgridfire_1_1_graph_engine.html#add98ece49ec5c538bddf3cc77004fe44">gridfire::GraphEngine::getPartitionFunction</a>,</div>
|
||||
<div class="line"><a id="l00237" name="l00237"></a><span class="lineno"> 237</span> <span class="stringliteral">"Get the partition function used by the engine."</span></div>
|
||||
<div class="line"><a id="l00238" name="l00238"></a><span class="lineno"> 238</span> );</div>
|
||||
<div class="line"><a id="l00239" name="l00239"></a><span class="lineno"> 239</span> py_dynamic_engine_bindings.def(<span class="stringliteral">"calculateReverseRate"</span>, &<a class="code hl_function" href="classgridfire_1_1_graph_engine.html#a0b7b85f824e1021ae6e56b644db53b28">gridfire::GraphEngine::calculateReverseRate</a>,</div>
|
||||
<div class="line"><a id="l00240" name="l00240"></a><span class="lineno"> 240</span> py::arg(<span class="stringliteral">"reaction"</span>),</div>
|
||||
<div class="line"><a id="l00241" name="l00241"></a><span class="lineno"> 241</span> py::arg(<span class="stringliteral">"T9"</span>),</div>
|
||||
<div class="line"><a id="l00242" name="l00242"></a><span class="lineno"> 242</span> <span class="stringliteral">"Calculate the reverse rate for a given reaction at a specific temperature."</span></div>
|
||||
<div class="line"><a id="l00243" name="l00243"></a><span class="lineno"> 243</span> );</div>
|
||||
<div class="line"><a id="l00244" name="l00244"></a><span class="lineno"> 244</span> py_dynamic_engine_bindings.def(<span class="stringliteral">"calculateReverseRateTwoBody"</span>, &<a class="code hl_function" href="classgridfire_1_1_graph_engine.html#a01fc9fd5d576b66d07360d05e821c755">gridfire::GraphEngine::calculateReverseRateTwoBody</a>,</div>
|
||||
<div class="line"><a id="l00245" name="l00245"></a><span class="lineno"> 245</span> py::arg(<span class="stringliteral">"reaction"</span>),</div>
|
||||
<div class="line"><a id="l00246" name="l00246"></a><span class="lineno"> 246</span> py::arg(<span class="stringliteral">"T9"</span>),</div>
|
||||
<div class="line"><a id="l00247" name="l00247"></a><span class="lineno"> 247</span> py::arg(<span class="stringliteral">"forwardRate"</span>),</div>
|
||||
<div class="line"><a id="l00248" name="l00248"></a><span class="lineno"> 248</span> py::arg(<span class="stringliteral">"expFactor"</span>),</div>
|
||||
<div class="line"><a id="l00249" name="l00249"></a><span class="lineno"> 249</span> <span class="stringliteral">"Calculate the reverse rate for a two-body reaction at a specific temperature."</span></div>
|
||||
<div class="line"><a id="l00250" name="l00250"></a><span class="lineno"> 250</span> );</div>
|
||||
<div class="line"><a id="l00251" name="l00251"></a><span class="lineno"> 251</span> py_dynamic_engine_bindings.def(<span class="stringliteral">"calculateReverseRateTwoBodyDerivative"</span>, &<a class="code hl_function" href="classgridfire_1_1_graph_engine.html#af28950c5af3a92eb03a1a64ed0f913e7">gridfire::GraphEngine::calculateReverseRateTwoBodyDerivative</a>,</div>
|
||||
<div class="line"><a id="l00252" name="l00252"></a><span class="lineno"> 252</span> py::arg(<span class="stringliteral">"reaction"</span>),</div>
|
||||
<div class="line"><a id="l00253" name="l00253"></a><span class="lineno"> 253</span> py::arg(<span class="stringliteral">"T9"</span>),</div>
|
||||
<div class="line"><a id="l00254" name="l00254"></a><span class="lineno"> 254</span> py::arg(<span class="stringliteral">"reverseRate"</span>),</div>
|
||||
<div class="line"><a id="l00255" name="l00255"></a><span class="lineno"> 255</span> <span class="stringliteral">"Calculate the derivative of the reverse rate for a two-body reaction at a specific temperature."</span></div>
|
||||
<div class="line"><a id="l00256" name="l00256"></a><span class="lineno"> 256</span> );</div>
|
||||
<div class="line"><a id="l00257" name="l00257"></a><span class="lineno"> 257</span> py_dynamic_engine_bindings.def(<span class="stringliteral">"isUsingReverseReactions"</span>, &<a class="code hl_function" href="classgridfire_1_1_graph_engine.html#ae7a210d9ab13ad5fb0c612f027acabd0">gridfire::GraphEngine::isUsingReverseReactions</a>,</div>
|
||||
<div class="line"><a id="l00258" name="l00258"></a><span class="lineno"> 258</span> <span class="stringliteral">"Check if the engine is using reverse reactions."</span></div>
|
||||
<div class="line"><a id="l00259" name="l00259"></a><span class="lineno"> 259</span> );</div>
|
||||
<div class="line"><a id="l00260" name="l00260"></a><span class="lineno"> 260</span> py_dynamic_engine_bindings.def(<span class="stringliteral">"setUseReverseReactions"</span>, &<a class="code hl_function" href="classgridfire_1_1_graph_engine.html#a409991d527ea4d4b05d1af907fe5d197">gridfire::GraphEngine::setUseReverseReactions</a>,</div>
|
||||
<div class="line"><a id="l00261" name="l00261"></a><span class="lineno"> 261</span> py::arg(<span class="stringliteral">"useReverse"</span>),</div>
|
||||
<div class="line"><a id="l00262" name="l00262"></a><span class="lineno"> 262</span> <span class="stringliteral">"Enable or disable the use of reverse reactions in the engine."</span></div>
|
||||
<div class="line"><a id="l00263" name="l00263"></a><span class="lineno"> 263</span> );</div>
|
||||
<div class="line"><a id="l00264" name="l00264"></a><span class="lineno"> 264</span> </div>
|
||||
<div class="line"><a id="l00265" name="l00265"></a><span class="lineno"> 265</span> </div>
|
||||
<div class="line"><a id="l00266" name="l00266"></a><span class="lineno"> 266</span> <span class="comment">// Register the general dynamic engine bindings</span></div>
|
||||
<div class="line"><a id="l00267" name="l00267"></a><span class="lineno"> 267</span> registerDynamicEngineDefs<gridfire::GraphEngine, gridfire::DynamicEngine>(py_dynamic_engine_bindings);</div>
|
||||
<div class="line"><a id="l00268" name="l00268"></a><span class="lineno"> 268</span>}</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00269" name="l00269"></a><span class="lineno"> 269</span> </div>
|
||||
<div class="foldopen" id="foldopen00270" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00270" name="l00270"></a><span class="lineno"><a class="line" href="engine_2bindings_8cpp.html#a74a027923ac27f235cf565f8d2a355bd"> 270</a></span><span class="keywordtype">void</span> <a class="code hl_function" href="engine_2bindings_8cpp.html#a74a027923ac27f235cf565f8d2a355bd">register_engine_view_bindings</a>(pybind11::module &m) {</div>
|
||||
<div class="line"><a id="l00271" name="l00271"></a><span class="lineno"> 271</span> <span class="keyword">auto</span> py_defined_engine_view_bindings = py::class_<gridfire::DefinedEngineView, gridfire::DynamicEngine>(m, <span class="stringliteral">"DefinedEngineView"</span>);</div>
|
||||
<div class="line"><a id="l00272" name="l00272"></a><span class="lineno"> 272</span> </div>
|
||||
<div class="line"><a id="l00273" name="l00273"></a><span class="lineno"> 273</span> py_defined_engine_view_bindings.def(py::init<std::vector<std::string>, <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a>&>(),</div>
|
||||
<div class="line"><a id="l00274" name="l00274"></a><span class="lineno"> 274</span> py::arg(<span class="stringliteral">"peNames"</span>),</div>
|
||||
<div class="line"><a id="l00275" name="l00275"></a><span class="lineno"> 275</span> py::arg(<span class="stringliteral">"baseEngine"</span>),</div>
|
||||
<div class="line"><a id="l00276" name="l00276"></a><span class="lineno"> 276</span> <span class="stringliteral">"Construct a defined engine view with a list of tracked reactions and a base engine."</span>);</div>
|
||||
<div class="line"><a id="l00277" name="l00277"></a><span class="lineno"> 277</span> py_defined_engine_view_bindings.def(<span class="stringliteral">"getBaseEngine"</span>, &<a class="code hl_function" href="classgridfire_1_1_defined_engine_view.html#a69b9a5812ad8bda13f956acd0da24484">gridfire::DefinedEngineView::getBaseEngine</a>,</div>
|
||||
<div class="line"><a id="l00278" name="l00278"></a><span class="lineno"> 278</span> <span class="stringliteral">"Get the base engine associated with this defined engine view."</span>);</div>
|
||||
<div class="line"><a id="l00279" name="l00279"></a><span class="lineno"> 279</span> </div>
|
||||
<div class="line"><a id="l00280" name="l00280"></a><span class="lineno"> 280</span> registerDynamicEngineDefs<gridfire::DefinedEngineView, gridfire::DynamicEngine>(py_defined_engine_view_bindings);</div>
|
||||
<div class="line"><a id="l00281" name="l00281"></a><span class="lineno"> 281</span> </div>
|
||||
<div class="line"><a id="l00282" name="l00282"></a><span class="lineno"> 282</span> <span class="keyword">auto</span> py_file_defined_engine_view_bindings = py::class_<gridfire::FileDefinedEngineView, gridfire::DefinedEngineView>(m, <span class="stringliteral">"FileDefinedEngineView"</span>);</div>
|
||||
<div class="line"><a id="l00283" name="l00283"></a><span class="lineno"> 283</span> py_file_defined_engine_view_bindings.def(py::init<gridfire::DynamicEngine&, const std::string&, const gridfire::io::NetworkFileParser&>(),</div>
|
||||
<div class="line"><a id="l00284" name="l00284"></a><span class="lineno"> 284</span> py::arg(<span class="stringliteral">"baseEngine"</span>),</div>
|
||||
<div class="line"><a id="l00285" name="l00285"></a><span class="lineno"> 285</span> py::arg(<span class="stringliteral">"fileName"</span>),</div>
|
||||
<div class="line"><a id="l00286" name="l00286"></a><span class="lineno"> 286</span> py::arg(<span class="stringliteral">"parser"</span>),</div>
|
||||
<div class="line"><a id="l00287" name="l00287"></a><span class="lineno"> 287</span> <span class="stringliteral">"Construct a defined engine view from a file and a base engine."</span></div>
|
||||
<div class="line"><a id="l00288" name="l00288"></a><span class="lineno"> 288</span> );</div>
|
||||
<div class="line"><a id="l00289" name="l00289"></a><span class="lineno"> 289</span> py_file_defined_engine_view_bindings.def(<span class="stringliteral">"getNetworkFile"</span>, &<a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ae0c35d8963b6ed05aeb88089ce301718">gridfire::FileDefinedEngineView::getNetworkFile</a>,</div>
|
||||
<div class="line"><a id="l00290" name="l00290"></a><span class="lineno"> 290</span> <span class="stringliteral">"Get the network file associated with this defined engine view."</span></div>
|
||||
<div class="line"><a id="l00291" name="l00291"></a><span class="lineno"> 291</span> );</div>
|
||||
<div class="line"><a id="l00292" name="l00292"></a><span class="lineno"> 292</span> py_file_defined_engine_view_bindings.def(<span class="stringliteral">"getParser"</span>, &<a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#aea834dc382ff1d663040db4532ea928f">gridfire::FileDefinedEngineView::getParser</a>,</div>
|
||||
<div class="line"><a id="l00293" name="l00293"></a><span class="lineno"> 293</span> <span class="stringliteral">"Get the parser used for this defined engine view."</span></div>
|
||||
<div class="line"><a id="l00294" name="l00294"></a><span class="lineno"> 294</span> );</div>
|
||||
<div class="line"><a id="l00295" name="l00295"></a><span class="lineno"> 295</span> py_file_defined_engine_view_bindings.def(<span class="stringliteral">"getBaseEngine"</span>, &<a class="code hl_function" href="classgridfire_1_1_defined_engine_view.html#a69b9a5812ad8bda13f956acd0da24484">gridfire::FileDefinedEngineView::getBaseEngine</a>,</div>
|
||||
<div class="line"><a id="l00296" name="l00296"></a><span class="lineno"> 296</span> <span class="stringliteral">"Get the base engine associated with this file defined engine view."</span>);</div>
|
||||
<div class="line"><a id="l00297" name="l00297"></a><span class="lineno"> 297</span> </div>
|
||||
<div class="line"><a id="l00298" name="l00298"></a><span class="lineno"> 298</span> registerDynamicEngineDefs<gridfire::FileDefinedEngineView, gridfire::DefinedEngineView>(py_file_defined_engine_view_bindings);</div>
|
||||
<div class="line"><a id="l00299" name="l00299"></a><span class="lineno"> 299</span> </div>
|
||||
<div class="line"><a id="l00300" name="l00300"></a><span class="lineno"> 300</span> <span class="keyword">auto</span> py_priming_engine_view_bindings = py::class_<gridfire::NetworkPrimingEngineView, gridfire::DefinedEngineView>(m, <span class="stringliteral">"NetworkPrimingEngineView"</span>);</div>
|
||||
<div class="line"><a id="l00301" name="l00301"></a><span class="lineno"> 301</span> py_priming_engine_view_bindings.def(py::init<const std::string&, gridfire::DynamicEngine&>(),</div>
|
||||
<div class="line"><a id="l00302" name="l00302"></a><span class="lineno"> 302</span> py::arg(<span class="stringliteral">"primingSymbol"</span>),</div>
|
||||
<div class="line"><a id="l00303" name="l00303"></a><span class="lineno"> 303</span> py::arg(<span class="stringliteral">"baseEngine"</span>),</div>
|
||||
<div class="line"><a id="l00304" name="l00304"></a><span class="lineno"> 304</span> <span class="stringliteral">"Construct a priming engine view with a priming symbol and a base engine."</span>);</div>
|
||||
<div class="line"><a id="l00305" name="l00305"></a><span class="lineno"> 305</span> py_priming_engine_view_bindings.def(py::init<const fourdst::atomic::Species&, gridfire::DynamicEngine&>(),</div>
|
||||
<div class="line"><a id="l00306" name="l00306"></a><span class="lineno"> 306</span> py::arg(<span class="stringliteral">"primingSpecies"</span>),</div>
|
||||
<div class="line"><a id="l00307" name="l00307"></a><span class="lineno"> 307</span> py::arg(<span class="stringliteral">"baseEngine"</span>),</div>
|
||||
<div class="line"><a id="l00308" name="l00308"></a><span class="lineno"> 308</span> <span class="stringliteral">"Construct a priming engine view with a priming species and a base engine."</span>);</div>
|
||||
<div class="line"><a id="l00309" name="l00309"></a><span class="lineno"> 309</span> py_priming_engine_view_bindings.def(<span class="stringliteral">"getBaseEngine"</span>, &<a class="code hl_function" href="classgridfire_1_1_defined_engine_view.html#a69b9a5812ad8bda13f956acd0da24484">gridfire::NetworkPrimingEngineView::getBaseEngine</a>,</div>
|
||||
<div class="line"><a id="l00310" name="l00310"></a><span class="lineno"> 310</span> <span class="stringliteral">"Get the base engine associated with this priming engine view."</span>);</div>
|
||||
<div class="line"><a id="l00311" name="l00311"></a><span class="lineno"> 311</span> </div>
|
||||
<div class="line"><a id="l00312" name="l00312"></a><span class="lineno"> 312</span> registerDynamicEngineDefs<gridfire::NetworkPrimingEngineView, gridfire::DefinedEngineView>(py_priming_engine_view_bindings);</div>
|
||||
<div class="line"><a id="l00313" name="l00313"></a><span class="lineno"> 313</span> </div>
|
||||
<div class="line"><a id="l00314" name="l00314"></a><span class="lineno"> 314</span> <span class="keyword">auto</span> py_adaptive_engine_view_bindings = py::class_<gridfire::AdaptiveEngineView, gridfire::DynamicEngine>(m, <span class="stringliteral">"AdaptiveEngineView"</span>);</div>
|
||||
<div class="line"><a id="l00315" name="l00315"></a><span class="lineno"> 315</span> py_adaptive_engine_view_bindings.def(py::init<gridfire::DynamicEngine&>(),</div>
|
||||
<div class="line"><a id="l00316" name="l00316"></a><span class="lineno"> 316</span> py::arg(<span class="stringliteral">"baseEngine"</span>),</div>
|
||||
<div class="line"><a id="l00317" name="l00317"></a><span class="lineno"> 317</span> <span class="stringliteral">"Construct an adaptive engine view with a base engine."</span>);</div>
|
||||
<div class="line"><a id="l00318" name="l00318"></a><span class="lineno"> 318</span> py_adaptive_engine_view_bindings.def(<span class="stringliteral">"getBaseEngine"</span>, &<a class="code hl_function" href="classgridfire_1_1_adaptive_engine_view.html#aee095b30a9dce5fcb5ae2fa1d2aa192c">gridfire::AdaptiveEngineView::getBaseEngine</a>,</div>
|
||||
<div class="line"><a id="l00319" name="l00319"></a><span class="lineno"> 319</span> <span class="stringliteral">"Get the base engine associated with this adaptive engine view."</span>);</div>
|
||||
<div class="line"><a id="l00320" name="l00320"></a><span class="lineno"> 320</span> </div>
|
||||
<div class="line"><a id="l00321" name="l00321"></a><span class="lineno"> 321</span> registerDynamicEngineDefs<gridfire::AdaptiveEngineView, gridfire::DynamicEngine>(py_adaptive_engine_view_bindings);</div>
|
||||
<div class="line"><a id="l00322" name="l00322"></a><span class="lineno"> 322</span> </div>
|
||||
<div class="line"><a id="l00323" name="l00323"></a><span class="lineno"> 323</span> <span class="keyword">auto</span> py_qse_cache_config = py::class_<gridfire::QSECacheConfig>(m, <span class="stringliteral">"QSECacheConfig"</span>);</div>
|
||||
<div class="line"><a id="l00324" name="l00324"></a><span class="lineno"> 324</span> <span class="keyword">auto</span> py_qse_cache_key = py::class_<gridfire::QSECacheKey>(m, <span class="stringliteral">"QSECacheKey"</span>);</div>
|
||||
<div class="line"><a id="l00325" name="l00325"></a><span class="lineno"> 325</span> </div>
|
||||
<div class="line"><a id="l00326" name="l00326"></a><span class="lineno"> 326</span> py_qse_cache_key.def(py::init<<span class="keywordtype">double</span>, <span class="keywordtype">double</span>, <span class="keyword">const</span> std::vector<double>&>(),</div>
|
||||
<div class="line"><a id="l00327" name="l00327"></a><span class="lineno"> 327</span> py::arg(<span class="stringliteral">"T9"</span>),</div>
|
||||
<div class="line"><a id="l00328" name="l00328"></a><span class="lineno"> 328</span> py::arg(<span class="stringliteral">"rho"</span>),</div>
|
||||
<div class="line"><a id="l00329" name="l00329"></a><span class="lineno"> 329</span> py::arg(<span class="stringliteral">"Y"</span>)</div>
|
||||
<div class="line"><a id="l00330" name="l00330"></a><span class="lineno"> 330</span> );</div>
|
||||
<div class="line"><a id="l00331" name="l00331"></a><span class="lineno"> 331</span> </div>
|
||||
<div class="line"><a id="l00332" name="l00332"></a><span class="lineno"> 332</span> py_qse_cache_key.def(<span class="stringliteral">"hash"</span>, &<a class="code hl_function" href="structgridfire_1_1_q_s_e_cache_key.html#a99772155522bf6cbe08313565444a39d">gridfire::QSECacheKey::hash</a>,</div>
|
||||
<div class="line"><a id="l00333" name="l00333"></a><span class="lineno"> 333</span> <span class="stringliteral">"Get the pre-computed hash value of the key"</span>);</div>
|
||||
<div class="line"><a id="l00334" name="l00334"></a><span class="lineno"> 334</span> </div>
|
||||
<div class="line"><a id="l00335" name="l00335"></a><span class="lineno"> 335</span> py_qse_cache_key.def_static(<span class="stringliteral">"bin"</span>, &<a class="code hl_function" href="structgridfire_1_1_q_s_e_cache_key.html#ac7e043ac0254936602c37a7e6a1391b3">gridfire::QSECacheKey::bin</a>,</div>
|
||||
<div class="line"><a id="l00336" name="l00336"></a><span class="lineno"> 336</span> py::arg(<span class="stringliteral">"value"</span>),</div>
|
||||
<div class="line"><a id="l00337" name="l00337"></a><span class="lineno"> 337</span> py::arg(<span class="stringliteral">"tol"</span>),</div>
|
||||
<div class="line"><a id="l00338" name="l00338"></a><span class="lineno"> 338</span> <span class="stringliteral">"bin a value based on a tolerance"</span>);</div>
|
||||
<div class="line"><a id="l00339" name="l00339"></a><span class="lineno"> 339</span> py_qse_cache_key.def(<span class="stringliteral">"__eq__"</span>, &gridfire::QSECacheKey::operator==,</div>
|
||||
<div class="line"><a id="l00340" name="l00340"></a><span class="lineno"> 340</span> py::arg(<span class="stringliteral">"other"</span>),</div>
|
||||
<div class="line"><a id="l00341" name="l00341"></a><span class="lineno"> 341</span> <span class="stringliteral">"Check if two QSECacheKeys are equal"</span>);</div>
|
||||
<div class="line"><a id="l00342" name="l00342"></a><span class="lineno"> 342</span> </div>
|
||||
<div class="line"><a id="l00343" name="l00343"></a><span class="lineno"> 343</span> <span class="keyword">auto</span> py_multiscale_engine_view_bindings = py::class_<gridfire::MultiscalePartitioningEngineView, gridfire::DynamicEngine>(m, <span class="stringliteral">"MultiscalePartitioningEngineView"</span>);</div>
|
||||
<div class="line"><a id="l00344" name="l00344"></a><span class="lineno"> 344</span> py_multiscale_engine_view_bindings.def(py::init<gridfire::GraphEngine&>(),</div>
|
||||
<div class="line"><a id="l00345" name="l00345"></a><span class="lineno"> 345</span> py::arg(<span class="stringliteral">"baseEngine"</span>),</div>
|
||||
<div class="line"><a id="l00346" name="l00346"></a><span class="lineno"> 346</span> <span class="stringliteral">"Construct a multiscale partitioning engine view with a base engine."</span>);</div>
|
||||
<div class="line"><a id="l00347" name="l00347"></a><span class="lineno"> 347</span> py_multiscale_engine_view_bindings.def(<span class="stringliteral">"getBaseEngine"</span>, &<a class="code hl_function" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a22bd1f0e821ed415611d75bac67063d1">gridfire::MultiscalePartitioningEngineView::getBaseEngine</a>,</div>
|
||||
<div class="line"><a id="l00348" name="l00348"></a><span class="lineno"> 348</span> <span class="stringliteral">"Get the base engine associated with this multiscale partitioning engine view."</span>);</div>
|
||||
<div class="line"><a id="l00349" name="l00349"></a><span class="lineno"> 349</span> py_multiscale_engine_view_bindings.def(<span class="stringliteral">"analyzeTimescalePoolConnectivity"</span>, &<a class="code hl_function" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#af13e764c118a6cc51847384e9c70e05b">gridfire::MultiscalePartitioningEngineView::analyzeTimescalePoolConnectivity</a>,</div>
|
||||
<div class="line"><a id="l00350" name="l00350"></a><span class="lineno"> 350</span> py::arg(<span class="stringliteral">"timescale_pools"</span>),</div>
|
||||
<div class="line"><a id="l00351" name="l00351"></a><span class="lineno"> 351</span> py::arg(<span class="stringliteral">"Y"</span>),</div>
|
||||
<div class="line"><a id="l00352" name="l00352"></a><span class="lineno"> 352</span> py::arg(<span class="stringliteral">"T9"</span>),</div>
|
||||
<div class="line"><a id="l00353" name="l00353"></a><span class="lineno"> 353</span> py::arg(<span class="stringliteral">"rho"</span>),</div>
|
||||
<div class="line"><a id="l00354" name="l00354"></a><span class="lineno"> 354</span> <span class="stringliteral">"Analyze the connectivity of timescale pools in the network."</span>);</div>
|
||||
<div class="line"><a id="l00355" name="l00355"></a><span class="lineno"> 355</span> py_multiscale_engine_view_bindings.def(<span class="stringliteral">"partitionNetwork"</span>, py::overload_cast<<span class="keyword">const</span> std::vector<double>&, <span class="keywordtype">double</span>, <span class="keywordtype">double</span>>(&<a class="code hl_function" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a7d26945df5395b9317552a3989c42d1c">gridfire::MultiscalePartitioningEngineView::partitionNetwork</a>),</div>
|
||||
<div class="line"><a id="l00356" name="l00356"></a><span class="lineno"> 356</span> py::arg(<span class="stringliteral">"Y"</span>),</div>
|
||||
<div class="line"><a id="l00357" name="l00357"></a><span class="lineno"> 357</span> py::arg(<span class="stringliteral">"T9"</span>),</div>
|
||||
<div class="line"><a id="l00358" name="l00358"></a><span class="lineno"> 358</span> py::arg(<span class="stringliteral">"rho"</span>),</div>
|
||||
<div class="line"><a id="l00359" name="l00359"></a><span class="lineno"> 359</span> <span class="stringliteral">"Partition the network based on species timescales and connectivity."</span>);</div>
|
||||
<div class="line"><a id="l00360" name="l00360"></a><span class="lineno"> 360</span> py_multiscale_engine_view_bindings.def(<span class="stringliteral">"partitionNetwork"</span>, py::overload_cast<const gridfire::NetIn&>(&<a class="code hl_function" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a7d26945df5395b9317552a3989c42d1c">gridfire::MultiscalePartitioningEngineView::partitionNetwork</a>),</div>
|
||||
<div class="line"><a id="l00361" name="l00361"></a><span class="lineno"> 361</span> py::arg(<span class="stringliteral">"netIn"</span>),</div>
|
||||
<div class="line"><a id="l00362" name="l00362"></a><span class="lineno"> 362</span> <span class="stringliteral">"Partition the network based on a NetIn object."</span>);</div>
|
||||
<div class="line"><a id="l00363" name="l00363"></a><span class="lineno"> 363</span> py_multiscale_engine_view_bindings.def(<span class="stringliteral">"exportToDot"</span>, &<a class="code hl_function" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#acff59a15abac30eee16e9fa7b355fb18">gridfire::MultiscalePartitioningEngineView::exportToDot</a>,</div>
|
||||
<div class="line"><a id="l00364" name="l00364"></a><span class="lineno"> 364</span> py::arg(<span class="stringliteral">"filename"</span>),</div>
|
||||
<div class="line"><a id="l00365" name="l00365"></a><span class="lineno"> 365</span> py::arg(<span class="stringliteral">"Y"</span>),</div>
|
||||
<div class="line"><a id="l00366" name="l00366"></a><span class="lineno"> 366</span> py::arg(<span class="stringliteral">"T9"</span>),</div>
|
||||
<div class="line"><a id="l00367" name="l00367"></a><span class="lineno"> 367</span> py::arg(<span class="stringliteral">"rho"</span>),</div>
|
||||
<div class="line"><a id="l00368" name="l00368"></a><span class="lineno"> 368</span> <span class="stringliteral">"Export the network to a DOT file for visualization."</span>);</div>
|
||||
<div class="line"><a id="l00369" name="l00369"></a><span class="lineno"> 369</span> py_multiscale_engine_view_bindings.def(<span class="stringliteral">"getFastSpecies"</span>, &<a class="code hl_function" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c82e4e082d1c82b1b090ac9847c7c5e">gridfire::MultiscalePartitioningEngineView::getFastSpecies</a>,</div>
|
||||
<div class="line"><a id="l00370" name="l00370"></a><span class="lineno"> 370</span> <span class="stringliteral">"Get the list of fast species in the network."</span>);</div>
|
||||
<div class="line"><a id="l00371" name="l00371"></a><span class="lineno"> 371</span> py_multiscale_engine_view_bindings.def(<span class="stringliteral">"getDynamicSpecies"</span>, &<a class="code hl_function" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a1e04e8cb8c84b1bd033ac599accf0888">gridfire::MultiscalePartitioningEngineView::getDynamicSpecies</a>,</div>
|
||||
<div class="line"><a id="l00372" name="l00372"></a><span class="lineno"> 372</span> <span class="stringliteral">"Get the list of dynamic species in the network."</span>);</div>
|
||||
<div class="line"><a id="l00373" name="l00373"></a><span class="lineno"> 373</span> py_multiscale_engine_view_bindings.def(<span class="stringliteral">"equilibrateNetwork"</span>, py::overload_cast<<span class="keyword">const</span> std::vector<double>&, <span class="keywordtype">double</span>, <span class="keywordtype">double</span>>(&<a class="code hl_function" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a4bc879246c6fbd8633b05052858df51d">gridfire::MultiscalePartitioningEngineView::equilibrateNetwork</a>),</div>
|
||||
<div class="line"><a id="l00374" name="l00374"></a><span class="lineno"> 374</span> py::arg(<span class="stringliteral">"Y"</span>),</div>
|
||||
<div class="line"><a id="l00375" name="l00375"></a><span class="lineno"> 375</span> py::arg(<span class="stringliteral">"T9"</span>),</div>
|
||||
<div class="line"><a id="l00376" name="l00376"></a><span class="lineno"> 376</span> py::arg(<span class="stringliteral">"rho"</span>),</div>
|
||||
<div class="line"><a id="l00377" name="l00377"></a><span class="lineno"> 377</span> <span class="stringliteral">"Equilibrate the network based on species abundances and conditions."</span>);</div>
|
||||
<div class="line"><a id="l00378" name="l00378"></a><span class="lineno"> 378</span> py_multiscale_engine_view_bindings.def(<span class="stringliteral">"equilibrateNetwork"</span>, py::overload_cast<const gridfire::NetIn&>(&<a class="code hl_function" href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a4bc879246c6fbd8633b05052858df51d">gridfire::MultiscalePartitioningEngineView::equilibrateNetwork</a>),</div>
|
||||
<div class="line"><a id="l00379" name="l00379"></a><span class="lineno"> 379</span> py::arg(<span class="stringliteral">"netIn"</span>),</div>
|
||||
<div class="line"><a id="l00380" name="l00380"></a><span class="lineno"> 380</span> <span class="stringliteral">"Equilibrate the network based on a NetIn object."</span>);</div>
|
||||
<div class="line"><a id="l00381" name="l00381"></a><span class="lineno"> 381</span> </div>
|
||||
<div class="line"><a id="l00382" name="l00382"></a><span class="lineno"> 382</span> registerDynamicEngineDefs<gridfire::MultiscalePartitioningEngineView, gridfire::DynamicEngine>(py_multiscale_engine_view_bindings);</div>
|
||||
<div class="line"><a id="l00383" name="l00383"></a><span class="lineno"> 383</span>}</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00384" name="l00384"></a><span class="lineno"> 384</span> </div>
|
||||
<div class="line"><a id="l00385" name="l00385"></a><span class="lineno"> 385</span> </div>
|
||||
<div class="line"><a id="l00386" name="l00386"></a><span class="lineno"> 386</span> </div>
|
||||
<div class="line"><a id="l00387" name="l00387"></a><span class="lineno"> 387</span> </div>
|
||||
<div class="line"><a id="l00388" name="l00388"></a><span class="lineno"> 388</span> </div>
|
||||
<div class="line"><a id="l00389" name="l00389"></a><span class="lineno"> 389</span> </div>
|
||||
<div class="line"><a id="l00390" name="l00390"></a><span class="lineno"> 390</span> </div>
|
||||
<div class="line"><a id="l00391" name="l00391"></a><span class="lineno"> 391</span> </div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_adaptive_engine_view_html_aee095b30a9dce5fcb5ae2fa1d2aa192c"><div class="ttname"><a href="classgridfire_1_1_adaptive_engine_view.html#aee095b30a9dce5fcb5ae2fa1d2aa192c">gridfire::AdaptiveEngineView::getBaseEngine</a></div><div class="ttdeci">const DynamicEngine & getBaseEngine() const override</div><div class="ttdoc">Gets the base engine.</div><div class="ttdef"><b>Definition</b> <a href="engine__adaptive_8h_source.html#l00239">engine_adaptive.h:239</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_defined_engine_view_html_a69b9a5812ad8bda13f956acd0da24484"><div class="ttname"><a href="classgridfire_1_1_defined_engine_view.html#a69b9a5812ad8bda13f956acd0da24484">gridfire::DefinedEngineView::getBaseEngine</a></div><div class="ttdeci">const DynamicEngine & getBaseEngine() const override</div><div class="ttdoc">Access the underlying engine instance.</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8cpp_source.html#l00022">engine_defined.cpp:22</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_dynamic_engine_html"><div class="ttname"><a href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></div><div class="ttdoc">Abstract class for engines supporting Jacobian and stoichiometry operations.</div><div class="ttdef"><b>Definition</b> <a href="engine__abstract_8h_source.html#l00130">engine_abstract.h:130</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_ae0c35d8963b6ed05aeb88089ce301718"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#ae0c35d8963b6ed05aeb88089ce301718">gridfire::FileDefinedEngineView::getNetworkFile</a></div><div class="ttdeci">std::string getNetworkFile() const</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8h_source.html#l00266">engine_defined.h:266</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_aea834dc382ff1d663040db4532ea928f"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#aea834dc382ff1d663040db4532ea928f">gridfire::FileDefinedEngineView::getParser</a></div><div class="ttdeci">const io::NetworkFileParser & getParser() const</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8h_source.html#l00267">engine_defined.h:267</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_graph_engine_html_a015f8975701f028c29835d3a9794e00f"><div class="ttname"><a href="classgridfire_1_1_graph_engine.html#a015f8975701f028c29835d3a9794e00f">gridfire::GraphEngine::isPrecomputationEnabled</a></div><div class="ttdeci">bool isPrecomputationEnabled() const</div><div class="ttdef"><b>Definition</b> <a href="engine__graph_8cpp_source.html#l00637">engine_graph.cpp:637</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_graph_engine_html_a01fc9fd5d576b66d07360d05e821c755"><div class="ttname"><a href="classgridfire_1_1_graph_engine.html#a01fc9fd5d576b66d07360d05e821c755">gridfire::GraphEngine::calculateReverseRateTwoBody</a></div><div class="ttdeci">double calculateReverseRateTwoBody(const reaction::Reaction &reaction, const double T9, const double forwardRate, const double expFactor) const</div><div class="ttdef"><b>Definition</b> <a href="engine__graph_8cpp_source.html#l00291">engine_graph.cpp:291</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_graph_engine_html_a0b7b85f824e1021ae6e56b644db53b28"><div class="ttname"><a href="classgridfire_1_1_graph_engine.html#a0b7b85f824e1021ae6e56b644db53b28">gridfire::GraphEngine::calculateReverseRate</a></div><div class="ttdeci">double calculateReverseRate(const reaction::Reaction &reaction, double T9) const</div><div class="ttdef"><b>Definition</b> <a href="engine__graph_8cpp_source.html#l00262">engine_graph.cpp:262</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_graph_engine_html_a409991d527ea4d4b05d1af907fe5d197"><div class="ttname"><a href="classgridfire_1_1_graph_engine.html#a409991d527ea4d4b05d1af907fe5d197">gridfire::GraphEngine::setUseReverseReactions</a></div><div class="ttdeci">void setUseReverseReactions(bool useReverse)</div><div class="ttdef"><b>Definition</b> <a href="engine__graph_8cpp_source.html#l00413">engine_graph.cpp:413</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_graph_engine_html_a6c5410878496abc349ba30b691cdf0f1"><div class="ttname"><a href="classgridfire_1_1_graph_engine.html#a6c5410878496abc349ba30b691cdf0f1">gridfire::GraphEngine::setPrecomputation</a></div><div class="ttdeci">void setPrecomputation(bool precompute)</div><div class="ttdef"><b>Definition</b> <a href="engine__graph_8cpp_source.html#l00633">engine_graph.cpp:633</a></div></div>
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||||
<div class="ttc" id="aclassgridfire_1_1_graph_engine_html_a832e2fe066381811a3e0464806ff5e95"><div class="ttname"><a href="classgridfire_1_1_graph_engine.html#a832e2fe066381811a3e0464806ff5e95">gridfire::GraphEngine::exportToCSV</a></div><div class="ttdeci">void exportToCSV(const std::string &filename) const</div><div class="ttdoc">Exports the network to a CSV file for analysis.</div><div class="ttdef"><b>Definition</b> <a href="engine__graph_8cpp_source.html#l00810">engine_graph.cpp:810</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_graph_engine_html_a8c29d8bbde407e913be5eb77efb2c0c9"><div class="ttname"><a href="classgridfire_1_1_graph_engine.html#a8c29d8bbde407e913be5eb77efb2c0c9">gridfire::GraphEngine::getNetReactionStoichiometry</a></div><div class="ttdeci">static std::unordered_map< fourdst::atomic::Species, int > getNetReactionStoichiometry(const reaction::Reaction &reaction)</div><div class="ttdoc">Gets the net stoichiometry for a given reaction.</div><div class="ttdef"><b>Definition</b> <a href="engine__graph_8cpp_source.html#l00749">engine_graph.cpp:749</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_graph_engine_html_aa6202cee0c3c481eda77cc9a91bc126b"><div class="ttname"><a href="classgridfire_1_1_graph_engine.html#aa6202cee0c3c481eda77cc9a91bc126b">gridfire::GraphEngine::involvesSpecies</a></div><div class="ttdeci">bool involvesSpecies(const fourdst::atomic::Species &species) const</div><div class="ttdoc">Checks if a given species is involved in the network.</div><div class="ttdef"><b>Definition</b> <a href="engine__graph_8cpp_source.html#l00179">engine_graph.cpp:179</a></div></div>
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||||
<div class="ttc" id="aclassgridfire_1_1_graph_engine_html_ad049a295e2bb0f3e97b76d5742875119"><div class="ttname"><a href="classgridfire_1_1_graph_engine.html#ad049a295e2bb0f3e97b76d5742875119">gridfire::GraphEngine::generateJacobianMatrix</a></div><div class="ttdeci">void generateJacobianMatrix(const std::vector< double > &Y_dynamic, const double T9, const double rho) const override</div><div class="ttdoc">Generates the Jacobian matrix for the current state.</div><div class="ttdef"><b>Definition</b> <a href="engine__graph_8cpp_source.html#l00654">engine_graph.cpp:654</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_graph_engine_html_adac8c7d62bae76e17fc060e86dadd929"><div class="ttname"><a href="classgridfire_1_1_graph_engine.html#adac8c7d62bae76e17fc060e86dadd929">gridfire::GraphEngine::exportToDot</a></div><div class="ttdeci">void exportToDot(const std::string &filename) const</div><div class="ttdoc">Exports the network to a DOT file for visualization.</div><div class="ttdef"><b>Definition</b> <a href="engine__graph_8cpp_source.html#l00762">engine_graph.cpp:762</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_graph_engine_html_add98ece49ec5c538bddf3cc77004fe44"><div class="ttname"><a href="classgridfire_1_1_graph_engine.html#add98ece49ec5c538bddf3cc77004fe44">gridfire::GraphEngine::getPartitionFunction</a></div><div class="ttdeci">const partition::PartitionFunction & getPartitionFunction() const</div><div class="ttdef"><b>Definition</b> <a href="engine__graph_8cpp_source.html#l00641">engine_graph.cpp:641</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_graph_engine_html_ae7a210d9ab13ad5fb0c612f027acabd0"><div class="ttname"><a href="classgridfire_1_1_graph_engine.html#ae7a210d9ab13ad5fb0c612f027acabd0">gridfire::GraphEngine::isUsingReverseReactions</a></div><div class="ttdeci">bool isUsingReverseReactions() const</div><div class="ttdef"><b>Definition</b> <a href="engine__graph_8cpp_source.html#l00409">engine_graph.cpp:409</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_graph_engine_html_af28950c5af3a92eb03a1a64ed0f913e7"><div class="ttname"><a href="classgridfire_1_1_graph_engine.html#af28950c5af3a92eb03a1a64ed0f913e7">gridfire::GraphEngine::calculateReverseRateTwoBodyDerivative</a></div><div class="ttdeci">double calculateReverseRateTwoBodyDerivative(const reaction::Reaction &reaction, const double T9, const double reverseRate) const</div><div class="ttdef"><b>Definition</b> <a href="engine__graph_8cpp_source.html#l00368">engine_graph.cpp:368</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_multiscale_partitioning_engine_view_html_a1e04e8cb8c84b1bd033ac599accf0888"><div class="ttname"><a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a1e04e8cb8c84b1bd033ac599accf0888">gridfire::MultiscalePartitioningEngineView::getDynamicSpecies</a></div><div class="ttdeci">const std::vector< fourdst::atomic::Species > & getDynamicSpecies() const</div><div class="ttdoc">Gets the dynamic species in the network.</div><div class="ttdef"><b>Definition</b> <a href="engine__multiscale_8cpp_source.html#l00789">engine_multiscale.cpp:789</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_multiscale_partitioning_engine_view_html_a22bd1f0e821ed415611d75bac67063d1"><div class="ttname"><a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a22bd1f0e821ed415611d75bac67063d1">gridfire::MultiscalePartitioningEngineView::getBaseEngine</a></div><div class="ttdeci">const DynamicEngine & getBaseEngine() const override</div><div class="ttdoc">Gets the base engine.</div><div class="ttdef"><b>Definition</b> <a href="engine__multiscale_8cpp_source.html#l00412">engine_multiscale.cpp:412</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_multiscale_partitioning_engine_view_html_a3c82e4e082d1c82b1b090ac9847c7c5e"><div class="ttname"><a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a3c82e4e082d1c82b1b090ac9847c7c5e">gridfire::MultiscalePartitioningEngineView::getFastSpecies</a></div><div class="ttdeci">std::vector< fourdst::atomic::Species > getFastSpecies() const</div><div class="ttdoc">Gets the fast species in the network.</div><div class="ttdef"><b>Definition</b> <a href="engine__multiscale_8cpp_source.html#l00776">engine_multiscale.cpp:776</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_multiscale_partitioning_engine_view_html_a4bc879246c6fbd8633b05052858df51d"><div class="ttname"><a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a4bc879246c6fbd8633b05052858df51d">gridfire::MultiscalePartitioningEngineView::equilibrateNetwork</a></div><div class="ttdeci">fourdst::composition::Composition equilibrateNetwork(const std::vector< double > &Y, double T9, double rho)</div><div class="ttdoc">Equilibrates the network by partitioning and solving for QSE abundances.</div><div class="ttdef"><b>Definition</b> <a href="engine__multiscale_8cpp_source.html#l00797">engine_multiscale.cpp:797</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_multiscale_partitioning_engine_view_html_a7d26945df5395b9317552a3989c42d1c"><div class="ttname"><a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#a7d26945df5395b9317552a3989c42d1c">gridfire::MultiscalePartitioningEngineView::partitionNetwork</a></div><div class="ttdeci">void partitionNetwork(const std::vector< double > &Y, double T9, double rho)</div><div class="ttdoc">Partitions the network into dynamic and algebraic (QSE) groups based on timescales.</div><div class="ttdef"><b>Definition</b> <a href="engine__multiscale_8cpp_source.html#l00438">engine_multiscale.cpp:438</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_multiscale_partitioning_engine_view_html_acff59a15abac30eee16e9fa7b355fb18"><div class="ttname"><a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#acff59a15abac30eee16e9fa7b355fb18">gridfire::MultiscalePartitioningEngineView::exportToDot</a></div><div class="ttdeci">void exportToDot(const std::string &filename, const std::vector< double > &Y, const double T9, const double rho) const</div><div class="ttdoc">Exports the network to a DOT file for visualization.</div><div class="ttdef"><b>Definition</b> <a href="engine__multiscale_8cpp_source.html#l00558">engine_multiscale.cpp:558</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_multiscale_partitioning_engine_view_html_af13e764c118a6cc51847384e9c70e05b"><div class="ttname"><a href="classgridfire_1_1_multiscale_partitioning_engine_view.html#af13e764c118a6cc51847384e9c70e05b">gridfire::MultiscalePartitioningEngineView::analyzeTimescalePoolConnectivity</a></div><div class="ttdeci">std::vector< std::vector< size_t > > analyzeTimescalePoolConnectivity(const std::vector< std::vector< size_t > > &timescale_pools, const std::vector< double > &Y, double T9, double rho) const</div><div class="ttdoc">Analyzes the connectivity of timescale pools.</div><div class="ttdef"><b>Definition</b> <a href="engine__multiscale_8cpp_source.html#l00416">engine_multiscale.cpp:416</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1reaction_1_1_reaction_html"><div class="ttname"><a href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></div><div class="ttdoc">Represents a single nuclear reaction from a specific data source.</div><div class="ttdef"><b>Definition</b> <a href="reaction_8h_source.html#l00072">reaction.h:72</a></div></div>
|
||||
<div class="ttc" id="aconcept_0d012022023301355052304263320136165002200160012126_1_1_is_dynamic_engine_html"><div class="ttname"><a href="concept_0d012022023301355052304263320136165002200160012126_1_1_is_dynamic_engine.html">@012022023301355052304263320136165002200160012126::IsDynamicEngine</a></div><div class="ttdef"><b>Definition</b> <a href="#l00018">bindings.cpp:18</a></div></div>
|
||||
<div class="ttc" id="aengine_2bindings_8cpp_html_a01ff627d4ef6a21b3323cd383dd29841"><div class="ttname"><a href="engine_2bindings_8cpp.html#a01ff627d4ef6a21b3323cd383dd29841">abs_stype_register_engine_bindings</a></div><div class="ttdeci">void abs_stype_register_engine_bindings(pybind11::module &m)</div><div class="ttdef"><b>Definition</b> <a href="#l00168">bindings.cpp:168</a></div></div>
|
||||
<div class="ttc" id="aengine_2bindings_8cpp_html_a4066aaf2dca39ee1ed37ad53169f1cdf"><div class="ttname"><a href="engine_2bindings_8cpp.html#a4066aaf2dca39ee1ed37ad53169f1cdf">abs_stype_register_dynamic_engine_bindings</a></div><div class="ttdeci">void abs_stype_register_dynamic_engine_bindings(pybind11::module &m)</div><div class="ttdef"><b>Definition</b> <a href="#l00172">bindings.cpp:172</a></div></div>
|
||||
<div class="ttc" id="aengine_2bindings_8cpp_html_a61b016667b7477d898be2a2a5bc7cab8"><div class="ttname"><a href="engine_2bindings_8cpp.html#a61b016667b7477d898be2a2a5bc7cab8">con_stype_register_graph_engine_bindings</a></div><div class="ttdeci">void con_stype_register_graph_engine_bindings(pybind11::module &m)</div><div class="ttdef"><b>Definition</b> <a href="#l00176">bindings.cpp:176</a></div></div>
|
||||
<div class="ttc" id="aengine_2bindings_8cpp_html_a74a027923ac27f235cf565f8d2a355bd"><div class="ttname"><a href="engine_2bindings_8cpp.html#a74a027923ac27f235cf565f8d2a355bd">register_engine_view_bindings</a></div><div class="ttdeci">void register_engine_view_bindings(pybind11::module &m)</div><div class="ttdef"><b>Definition</b> <a href="#l00270">bindings.cpp:270</a></div></div>
|
||||
<div class="ttc" id="aengine_2bindings_8cpp_html_a884aac3c3f2e8c62843c69329052d642"><div class="ttname"><a href="engine_2bindings_8cpp.html#a884aac3c3f2e8c62843c69329052d642">register_base_engine_bindings</a></div><div class="ttdeci">void register_base_engine_bindings(pybind11::module &m)</div><div class="ttdef"><b>Definition</b> <a href="#l00155">bindings.cpp:155</a></div></div>
|
||||
<div class="ttc" id="aengine_2bindings_8cpp_html_ac2df9cd0e71d39b97ddd47b3e7024b0c"><div class="ttname"><a href="engine_2bindings_8cpp.html#ac2df9cd0e71d39b97ddd47b3e7024b0c">register_engine_bindings</a></div><div class="ttdeci">void register_engine_bindings(py::module &m)</div><div class="ttdef"><b>Definition</b> <a href="#l00114">bindings.cpp:114</a></div></div>
|
||||
<div class="ttc" id="aengine_2bindings_8h_html"><div class="ttname"><a href="engine_2bindings_8h.html">bindings.h</a></div></div>
|
||||
<div class="ttc" id="aengine_8h_html"><div class="ttname"><a href="engine_8h.html">engine.h</a></div><div class="ttdoc">Core header for the GridFire reaction network engine module.</div></div>
|
||||
<div class="ttc" id="anamespacegridfire_html_a0210bd2e07538932135a56b62b8ddb57a100e3bf0197221c19b222badf42aa964"><div class="ttname"><a href="namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a100e3bf0197221c19b222badf42aa964">gridfire::NetworkBuildDepth::FourthOrder</a></div><div class="ttdeci">@ FourthOrder</div><div class="ttdef"><b>Definition</b> <a href="building_8h_source.html#l00026">building.h:26</a></div></div>
|
||||
<div class="ttc" id="anamespacegridfire_html_a0210bd2e07538932135a56b62b8ddb57a264572d66aed5373d19dc80c7cde1f46"><div class="ttname"><a href="namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a264572d66aed5373d19dc80c7cde1f46">gridfire::NetworkBuildDepth::SecondOrder</a></div><div class="ttdeci">@ SecondOrder</div><div class="ttdef"><b>Definition</b> <a href="building_8h_source.html#l00024">building.h:24</a></div></div>
|
||||
<div class="ttc" id="anamespacegridfire_html_a0210bd2e07538932135a56b62b8ddb57a3fc719e07f9f63e7f11a3d4fb74b476f"><div class="ttname"><a href="namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a3fc719e07f9f63e7f11a3d4fb74b476f">gridfire::NetworkBuildDepth::ThirdOrder</a></div><div class="ttdeci">@ ThirdOrder</div><div class="ttdef"><b>Definition</b> <a href="building_8h_source.html#l00025">building.h:25</a></div></div>
|
||||
<div class="ttc" id="anamespacegridfire_html_a0210bd2e07538932135a56b62b8ddb57a5105376c2b90747e00bed5bf2953dd56"><div class="ttname"><a href="namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a5105376c2b90747e00bed5bf2953dd56">gridfire::NetworkBuildDepth::FifthOrder</a></div><div class="ttdeci">@ FifthOrder</div><div class="ttdef"><b>Definition</b> <a href="building_8h_source.html#l00027">building.h:27</a></div></div>
|
||||
<div class="ttc" id="anamespacegridfire_html_a0210bd2e07538932135a56b62b8ddb57a928d0f1285ee7d36c1c2fa1b1b7a164c"><div class="ttname"><a href="namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a928d0f1285ee7d36c1c2fa1b1b7a164c">gridfire::NetworkBuildDepth::Shallow</a></div><div class="ttdeci">@ Shallow</div><div class="ttdef"><b>Definition</b> <a href="building_8h_source.html#l00023">building.h:23</a></div></div>
|
||||
<div class="ttc" id="anamespacegridfire_html_a0210bd2e07538932135a56b62b8ddb57abbd47109890259c0127154db1af26c75"><div class="ttname"><a href="namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57abbd47109890259c0127154db1af26c75">gridfire::NetworkBuildDepth::Full</a></div><div class="ttdeci">@ Full</div><div class="ttdef"><b>Definition</b> <a href="building_8h_source.html#l00022">building.h:22</a></div></div>
|
||||
<div class="ttc" id="anamespacegridfire_html_a02be158966bf82a91b159b7a962c3fa5"><div class="ttname"><a href="namespacegridfire.html#a02be158966bf82a91b159b7a962c3fa5">gridfire::PrimingReportStatusStrings</a></div><div class="ttdeci">std::map< PrimingReportStatus, std::string > PrimingReportStatusStrings</div><div class="ttdoc">Mapping from PrimingReportStatus codes to human-readable strings.</div><div class="ttdef"><b>Definition</b> <a href="reporting_8h_source.html#l00047">reporting.h:47</a></div></div>
|
||||
<div class="ttc" id="anamespacegridfire_html_a898dfe22579e649935645cbd6f073178"><div class="ttname"><a href="namespacegridfire.html#a898dfe22579e649935645cbd6f073178">gridfire::SparsityPattern</a></div><div class="ttdeci">std::vector< std::pair< size_t, size_t > > SparsityPattern</div><div class="ttdef"><b>Definition</b> <a href="engine__abstract_8h_source.html#l00065">engine_abstract.h:65</a></div></div>
|
||||
<div class="ttc" id="anamespacegridfire_html_a8bea3d74f35d640e693fa398e9b3e154"><div class="ttname"><a href="namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154">gridfire::PrimingReportStatus</a></div><div class="ttdeci">PrimingReportStatus</div><div class="ttdoc">Enumerates outcome codes for a network priming operation.</div><div class="ttdef"><b>Definition</b> <a href="reporting_8h_source.html#l00031">reporting.h:31</a></div></div>
|
||||
<div class="ttc" id="anamespacegridfire_html_a8bea3d74f35d640e693fa398e9b3e154a186367e42446c004076290ca7913d931"><div class="ttname"><a href="namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a186367e42446c004076290ca7913d931">gridfire::PrimingReportStatus::FAILED_TO_FIND_PRIMING_REACTIONS</a></div><div class="ttdeci">@ FAILED_TO_FIND_PRIMING_REACTIONS</div><div class="ttdef"><b>Definition</b> <a href="reporting_8h_source.html#l00037">reporting.h:37</a></div></div>
|
||||
<div class="ttc" id="anamespacegridfire_html_a8bea3d74f35d640e693fa398e9b3e154a5afaf45bc4c02208d502d9c0c26d8287"><div class="ttname"><a href="namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a5afaf45bc4c02208d502d9c0c26d8287">gridfire::PrimingReportStatus::MAX_ITERATIONS_REACHED</a></div><div class="ttdeci">@ MAX_ITERATIONS_REACHED</div><div class="ttdef"><b>Definition</b> <a href="reporting_8h_source.html#l00034">reporting.h:34</a></div></div>
|
||||
<div class="ttc" id="anamespacegridfire_html_a8bea3d74f35d640e693fa398e9b3e154a64d98633bac1de0eb2a539cbfd2a5c2a"><div class="ttname"><a href="namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a64d98633bac1de0eb2a539cbfd2a5c2a">gridfire::PrimingReportStatus::FULL_SUCCESS</a></div><div class="ttdeci">@ FULL_SUCCESS</div><div class="ttdef"><b>Definition</b> <a href="reporting_8h_source.html#l00032">reporting.h:32</a></div></div>
|
||||
<div class="ttc" id="anamespacegridfire_html_a8bea3d74f35d640e693fa398e9b3e154a708c14ec56942aa5f32e7bef1e29db45"><div class="ttname"><a href="namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a708c14ec56942aa5f32e7bef1e29db45">gridfire::PrimingReportStatus::NO_SPECIES_TO_PRIME</a></div><div class="ttdeci">@ NO_SPECIES_TO_PRIME</div><div class="ttdef"><b>Definition</b> <a href="reporting_8h_source.html#l00033">reporting.h:33</a></div></div>
|
||||
<div class="ttc" id="anamespacegridfire_html_a8bea3d74f35d640e693fa398e9b3e154a9870268bdece09274aea75557a19158a"><div class="ttname"><a href="namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a9870268bdece09274aea75557a19158a">gridfire::PrimingReportStatus::FAILED_TO_FIND_CREATION_CHANNEL</a></div><div class="ttdeci">@ FAILED_TO_FIND_CREATION_CHANNEL</div><div class="ttdef"><b>Definition</b> <a href="reporting_8h_source.html#l00036">reporting.h:36</a></div></div>
|
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<div class="ttc" id="anamespacegridfire_html_a8bea3d74f35d640e693fa398e9b3e154ab837953f2841baabbae6bb5f2e43e71e"><div class="ttname"><a href="namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154ab837953f2841baabbae6bb5f2e43e71e">gridfire::PrimingReportStatus::BASE_NETWORK_TOO_SHALLOW</a></div><div class="ttdeci">@ BASE_NETWORK_TOO_SHALLOW</div><div class="ttdef"><b>Definition</b> <a href="reporting_8h_source.html#l00038">reporting.h:38</a></div></div>
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<div class="ttc" id="anamespacegridfire_html_a8bea3d74f35d640e693fa398e9b3e154ae8870a753743b62c511c939eef95c93f"><div class="ttname"><a href="namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154ae8870a753743b62c511c939eef95c93f">gridfire::PrimingReportStatus::FAILED_TO_FINALIZE_COMPOSITION</a></div><div class="ttdeci">@ FAILED_TO_FINALIZE_COMPOSITION</div><div class="ttdef"><b>Definition</b> <a href="reporting_8h_source.html#l00035">reporting.h:35</a></div></div>
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<div class="ttc" id="anamespacegridfire_html_aedddb89e400a6111f69bfe0c3fd4214e"><div class="ttname"><a href="namespacegridfire.html#aedddb89e400a6111f69bfe0c3fd4214e">gridfire::build_reaclib_nuclear_network</a></div><div class="ttdeci">reaction::LogicalReactionSet build_reaclib_nuclear_network(const fourdst::composition::Composition &composition, BuildDepthType maxLayers=NetworkBuildDepth::Full, bool reverse=false)</div><div class="ttdoc">Builds a nuclear reaction network from the Reaclib library based on an initial composition.</div></div>
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<div class="ttc" id="apy__engine_8h_html"><div class="ttname"><a href="py__engine_8h.html">py_engine.h</a></div></div>
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<div class="ttc" id="astructgridfire_1_1_priming_report_html"><div class="ttname"><a href="structgridfire_1_1_priming_report.html">gridfire::PrimingReport</a></div><div class="ttdoc">Captures the result of a network priming operation.</div><div class="ttdef"><b>Definition</b> <a href="reporting_8h_source.html#l00067">reporting.h:67</a></div></div>
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<div class="ttc" id="astructgridfire_1_1_priming_report_html_a15032fd3354bd8fb383e13929bbd0ceb"><div class="ttname"><a href="structgridfire_1_1_priming_report.html#a15032fd3354bd8fb383e13929bbd0ceb">gridfire::PrimingReport::primedComposition</a></div><div class="ttdeci">fourdst::composition::Composition primedComposition</div><div class="ttdef"><b>Definition</b> <a href="reporting_8h_source.html#l00069">reporting.h:69</a></div></div>
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<div class="ttc" id="astructgridfire_1_1_priming_report_html_a37aa83b55f3da0bc3ff6bcb7b79878a7"><div class="ttname"><a href="structgridfire_1_1_priming_report.html#a37aa83b55f3da0bc3ff6bcb7b79878a7">gridfire::PrimingReport::massFractionChanges</a></div><div class="ttdeci">std::vector< std::pair< fourdst::atomic::Species, double > > massFractionChanges</div><div class="ttdef"><b>Definition</b> <a href="reporting_8h_source.html#l00074">reporting.h:74</a></div></div>
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<div class="ttc" id="astructgridfire_1_1_priming_report_html_a5fec4b465afb4f2d9bc30cd1cab1b50d"><div class="ttname"><a href="structgridfire_1_1_priming_report.html#a5fec4b465afb4f2d9bc30cd1cab1b50d">gridfire::PrimingReport::status</a></div><div class="ttdeci">PrimingReportStatus status</div><div class="ttdef"><b>Definition</b> <a href="reporting_8h_source.html#l00078">reporting.h:78</a></div></div>
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<div class="ttc" id="astructgridfire_1_1_priming_report_html_afa4dd791ddd9df84039554524b681fb3"><div class="ttname"><a href="structgridfire_1_1_priming_report.html#afa4dd791ddd9df84039554524b681fb3">gridfire::PrimingReport::success</a></div><div class="ttdeci">bool success</div><div class="ttdef"><b>Definition</b> <a href="reporting_8h_source.html#l00076">reporting.h:76</a></div></div>
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<div class="ttc" id="astructgridfire_1_1_q_s_e_cache_key_html_a99772155522bf6cbe08313565444a39d"><div class="ttname"><a href="structgridfire_1_1_q_s_e_cache_key.html#a99772155522bf6cbe08313565444a39d">gridfire::QSECacheKey::hash</a></div><div class="ttdeci">size_t hash() const</div><div class="ttdoc">Computes the hash value for this key.</div><div class="ttdef"><b>Definition</b> <a href="engine__multiscale_8cpp_source.html#l01567">engine_multiscale.cpp:1567</a></div></div>
|
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<div class="ttc" id="astructgridfire_1_1_q_s_e_cache_key_html_ac7e043ac0254936602c37a7e6a1391b3"><div class="ttname"><a href="structgridfire_1_1_q_s_e_cache_key.html#ac7e043ac0254936602c37a7e6a1391b3">gridfire::QSECacheKey::bin</a></div><div class="ttdeci">static long bin(double value, double tol)</div><div class="ttdoc">Converts a value to a discrete bin based on a tolerance.</div><div class="ttdef"><b>Definition</b> <a href="engine__multiscale_8cpp_source.html#l01588">engine_multiscale.cpp:1588</a></div></div>
|
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<div class="ttc" id="astructgridfire_1_1_step_derivatives_html_ab4aeb41be952c7b5844e1ee81fef9008"><div class="ttname"><a href="structgridfire_1_1_step_derivatives.html#ab4aeb41be952c7b5844e1ee81fef9008">gridfire::StepDerivatives::nuclearEnergyGenerationRate</a></div><div class="ttdeci">T nuclearEnergyGenerationRate</div><div class="ttdoc">Specific energy generation rate (e.g., erg/g/s).</div><div class="ttdef"><b>Definition</b> <a href="engine__abstract_8h_source.html#l00062">engine_abstract.h:62</a></div></div>
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<div class="ttc" id="astructgridfire_1_1_step_derivatives_html_ae0de268b86c2404379409c4feae0b34d"><div class="ttname"><a href="structgridfire_1_1_step_derivatives.html#ae0de268b86c2404379409c4feae0b34d">gridfire::StepDerivatives::dydt</a></div><div class="ttdeci">std::vector< T > dydt</div><div class="ttdoc">Derivatives of abundances (dY/dt for each species).</div><div class="ttdef"><b>Definition</b> <a href="engine__abstract_8h_source.html#l00061">engine_abstract.h:61</a></div></div>
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