refactor(.gitignore): removed html/ from .gitignore
This commit is contained in:
@@ -106,7 +106,7 @@ $(function(){initNavTree('solver_8h_source.html',''); initResizable(true); });
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<div class="line"><a id="l00002" name="l00002"></a><span class="lineno"> 2</span> </div>
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<div class="line"><a id="l00003" name="l00003"></a><span class="lineno"> 3</span><span class="preprocessor">#include "<a class="code" href="engine__graph_8h.html">gridfire/engine/engine_graph.h</a>"</span></div>
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<div class="line"><a id="l00004" name="l00004"></a><span class="lineno"> 4</span><span class="preprocessor">#include "<a class="code" href="engine__abstract_8h.html">gridfire/engine/engine_abstract.h</a>"</span></div>
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<div class="line"><a id="l00005" name="l00005"></a><span class="lineno"> 5</span><span class="preprocessor">#include "<a class="code" href="engine__adaptive_8h.html">gridfire/engine/engine_adaptive.h</a>"</span></div>
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<div class="line"><a id="l00005" name="l00005"></a><span class="lineno"> 5</span><span class="preprocessor">#include "<a class="code" href="engine__adaptive_8h.html">../engine/views/engine_adaptive.h</a>"</span></div>
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<div class="line"><a id="l00006" name="l00006"></a><span class="lineno"> 6</span><span class="preprocessor">#include "<a class="code" href="network_8h.html">gridfire/network.h</a>"</span></div>
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<div class="line"><a id="l00007" name="l00007"></a><span class="lineno"> 7</span> </div>
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<div class="line"><a id="l00008" name="l00008"></a><span class="lineno"> 8</span><span class="preprocessor">#include "fourdst/logging/logging.h"</span></div>
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@@ -114,7 +114,7 @@ $(function(){initNavTree('solver_8h_source.html',''); initResizable(true); });
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<div class="line"><a id="l00010" name="l00010"></a><span class="lineno"> 10</span> </div>
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<div class="line"><a id="l00011" name="l00011"></a><span class="lineno"> 11</span><span class="preprocessor">#include "quill/Logger.h"</span></div>
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<div class="line"><a id="l00012" name="l00012"></a><span class="lineno"> 12</span> </div>
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<div class="line"><a id="l00013" name="l00013"></a><span class="lineno"> 13</span><span class="preprocessor">#include "Eigen/Dense"</span></div>
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<div class="line"><a id="l00013" name="l00013"></a><span class="lineno"> 13</span><span class="preprocessor">#include "unsupported/Eigen/NonLinearOptimization"</span> <span class="comment">// Required for LevenbergMarquardt</span></div>
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<div class="line"><a id="l00014" name="l00014"></a><span class="lineno"> 14</span> </div>
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<div class="line"><a id="l00015" name="l00015"></a><span class="lineno"> 15</span><span class="preprocessor">#include <vector></span></div>
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<div class="line"><a id="l00016" name="l00016"></a><span class="lineno"> 16</span> </div>
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@@ -149,9 +149,9 @@ $(function(){initNavTree('solver_8h_source.html',''); initResizable(true); });
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<div class="line"><a id="l00079" name="l00079"></a><span class="lineno"><a class="line" href="namespacegridfire_1_1solver.html#a5361d6cf364f0ba2f88285a60bb9cd92"> 79</a></span> <span class="keyword">using </span><a class="code hl_typedef" href="namespacegridfire_1_1solver.html#a5361d6cf364f0ba2f88285a60bb9cd92">StaticNetworkSolverStrategy</a> = <a class="code hl_class" href="classgridfire_1_1solver_1_1_network_solver_strategy.html">NetworkSolverStrategy<Engine></a>;</div>
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<div class="line"><a id="l00080" name="l00080"></a><span class="lineno"> 80</span></div>
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<div class="foldopen" id="foldopen00098" data-start="{" data-end="};">
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<div class="line"><a id="l00098" name="l00098"></a><span class="lineno"><a class="line" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html"> 98</a></span> <span class="keyword">class </span><a class="code hl_class" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html">QSENetworkSolver</a> final : <span class="keyword">public</span> <a class="code hl_typedef" href="namespacegridfire_1_1solver.html#af3b10822ab58b55365577755c1f4faf6">AdaptiveNetworkSolverStrategy</a> {</div>
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<div class="line"><a id="l00098" name="l00098"></a><span class="lineno"><a class="line" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html"> 98</a></span> <span class="keyword">class </span><a class="code hl_class" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html">QSENetworkSolver</a> final : <span class="keyword">public</span> <a class="code hl_typedef" href="namespacegridfire_1_1solver.html#a8118d08bc25e439754b43a3f5ecc1db3">DynamicNetworkSolverStrategy</a> {</div>
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<div class="line"><a id="l00099" name="l00099"></a><span class="lineno"> 99</span> <span class="keyword">public</span>:</div>
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<div class="line"><a id="l00104" name="l00104"></a><span class="lineno"> 104</span> <span class="keyword">using </span>AdaptiveNetworkSolverStrategy::AdaptiveNetworkSolverStrategy;</div>
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<div class="line"><a id="l00104" name="l00104"></a><span class="lineno"> 104</span> <span class="keyword">using </span>DynamicNetworkSolverStrategy::DynamicNetworkSolverStrategy;</div>
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<div class="line"><a id="l00105" name="l00105"></a><span class="lineno"> 105</span></div>
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<div class="line"><a id="l00124" name="l00124"></a><span class="lineno"> 124</span> <a class="code hl_struct" href="structgridfire_1_1_net_out.html">NetOut</a> <a class="code hl_function" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a53b5496db7fed6f345dca39656bf9c0e">evaluate</a>(<span class="keyword">const</span> <a class="code hl_struct" href="structgridfire_1_1_net_in.html">NetIn</a>& netIn) <span class="keyword">override</span>;</div>
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<div class="line"><a id="l00125" name="l00125"></a><span class="lineno"> 125</span> <span class="keyword">private</span>: <span class="comment">// methods</span></div>
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@@ -245,191 +245,195 @@ $(function(){initNavTree('solver_8h_source.html',''); initResizable(true); });
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<div class="line"><a id="l00301" name="l00301"></a><span class="lineno"> 301</span></div>
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<div class="line"><a id="l00308" name="l00308"></a><span class="lineno"> 308</span> <span class="keyword">template</span><<span class="keyword">typename</span> T></div>
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<div class="foldopen" id="foldopen00309" data-start="{" data-end="};">
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<div class="line"><a id="l00309" name="l00309"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html"> 309</a></span> <span class="keyword">struct </span><a class="code hl_function" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#af8650f704c2ca512c9c5b4562b3b0958">EigenFunctor</a> {</div>
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<div class="line"><a id="l00309" name="l00309"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html"> 309</a></span> <span class="keyword">struct </span><a class="code hl_function" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a94a1e5994062c32bd45c248860be6fa4">EigenFunctor</a> {</div>
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<div class="line"><a id="l00310" name="l00310"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#ac4ec3c180a9778acdd604a9b80d25399"> 310</a></span> <span class="keyword">using </span><a class="code hl_typedef" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#ac4ec3c180a9778acdd604a9b80d25399">InputType</a> = Eigen::Matrix<T, Eigen::Dynamic, 1>;</div>
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<div class="line"><a id="l00311" name="l00311"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#abc86b32db81acf1b24feb3763dc4ddb0"> 311</a></span> <span class="keyword">using </span><a class="code hl_typedef" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#abc86b32db81acf1b24feb3763dc4ddb0">OutputType</a> = Eigen::Matrix<T, Eigen::Dynamic, 1>;</div>
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<div class="line"><a id="l00312" name="l00312"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#ad42fdb6d5ae06eaa6ddccf03eba0a50c"> 312</a></span> <span class="keyword">using </span><a class="code hl_typedef" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#ad42fdb6d5ae06eaa6ddccf03eba0a50c">JacobianType</a> = Eigen::Matrix<T, Eigen::Dynamic, Eigen::Dynamic>;</div>
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<div class="line"><a id="l00313" name="l00313"></a><span class="lineno"> 313</span> </div>
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<div class="line"><a id="l00314" name="l00314"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a93b46ca95ddf9e4d21d02700621e6285"> 314</a></span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a>& <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a93b46ca95ddf9e4d21d02700621e6285">m_engine</a>; </div>
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<div class="line"><a id="l00315" name="l00315"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#af4f10300bde1e8e07b896bfca6335401"> 315</a></span> <span class="keyword">const</span> std::vector<double>& <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#af4f10300bde1e8e07b896bfca6335401">m_YDynamic</a>; </div>
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<div class="line"><a id="l00316" name="l00316"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a08ce53701b152f3ce108c1c18ce64de2"> 316</a></span> <span class="keyword">const</span> std::vector<size_t>& <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a08ce53701b152f3ce108c1c18ce64de2">m_dynamicSpeciesIndices</a>; </div>
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<div class="line"><a id="l00317" name="l00317"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#abaf28fdd93e881ef56c24f541be7492d"> 317</a></span> <span class="keyword">const</span> std::vector<size_t>& <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#abaf28fdd93e881ef56c24f541be7492d">m_QSESpeciesIndices</a>; </div>
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<div class="line"><a id="l00318" name="l00318"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a6771ae56ddd9058954b42ee92a378309"> 318</a></span> <span class="keyword">const</span> <span class="keywordtype">double</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a6771ae56ddd9058954b42ee92a378309">m_T9</a>; </div>
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<div class="line"><a id="l00319" name="l00319"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#ab0a0d4c166e97b971543cbbf2b0a1a2e"> 319</a></span> <span class="keyword">const</span> <span class="keywordtype">double</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#ab0a0d4c166e97b971543cbbf2b0a1a2e">m_rho</a>; </div>
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<div class="line"><a id="l00320" name="l00320"></a><span class="lineno"> 320</span></div>
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<div class="foldopen" id="foldopen00330" data-start="{" data-end="}">
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<div class="line"><a id="l00330" name="l00330"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#af8650f704c2ca512c9c5b4562b3b0958"> 330</a></span> <a class="code hl_function" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#af8650f704c2ca512c9c5b4562b3b0958">EigenFunctor</a>(</div>
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<div class="line"><a id="l00331" name="l00331"></a><span class="lineno"> 331</span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a>& engine,</div>
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<div class="line"><a id="l00332" name="l00332"></a><span class="lineno"> 332</span> <span class="keyword">const</span> std::vector<double>& YDynamic,</div>
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<div class="line"><a id="l00333" name="l00333"></a><span class="lineno"> 333</span> <span class="keyword">const</span> std::vector<size_t>& dynamicSpeciesIndices,</div>
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<div class="line"><a id="l00334" name="l00334"></a><span class="lineno"> 334</span> <span class="keyword">const</span> std::vector<size_t>& QSESpeciesIndices,</div>
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<div class="line"><a id="l00335" name="l00335"></a><span class="lineno"> 335</span> <span class="keyword">const</span> <span class="keywordtype">double</span> T9,</div>
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<div class="line"><a id="l00336" name="l00336"></a><span class="lineno"> 336</span> <span class="keyword">const</span> <span class="keywordtype">double</span> rho</div>
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<div class="line"><a id="l00337" name="l00337"></a><span class="lineno"> 337</span> ) :</div>
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<div class="line"><a id="l00338" name="l00338"></a><span class="lineno"> 338</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a93b46ca95ddf9e4d21d02700621e6285">m_engine</a>(engine),</div>
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<div class="line"><a id="l00339" name="l00339"></a><span class="lineno"> 339</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#af4f10300bde1e8e07b896bfca6335401">m_YDynamic</a>(YDynamic),</div>
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<div class="line"><a id="l00340" name="l00340"></a><span class="lineno"> 340</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a08ce53701b152f3ce108c1c18ce64de2">m_dynamicSpeciesIndices</a>(dynamicSpeciesIndices),</div>
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<div class="line"><a id="l00341" name="l00341"></a><span class="lineno"> 341</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#abaf28fdd93e881ef56c24f541be7492d">m_QSESpeciesIndices</a>(QSESpeciesIndices),</div>
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<div class="line"><a id="l00342" name="l00342"></a><span class="lineno"> 342</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a6771ae56ddd9058954b42ee92a378309">m_T9</a>(T9),</div>
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<div class="line"><a id="l00343" name="l00343"></a><span class="lineno"> 343</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#ab0a0d4c166e97b971543cbbf2b0a1a2e">m_rho</a>(rho) {}</div>
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<div class="line"><a id="l00313" name="l00313"></a><span class="lineno"> 313</span> <span class="keyword">enum</span> {</div>
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<div class="line"><a id="l00314" name="l00314"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a1bff36d14c3e1f7a276d9fe6b564abdfab349cc75d98609f22769f5ce87050dac"> 314</a></span> <a class="code hl_enumvalue" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a1bff36d14c3e1f7a276d9fe6b564abdfab349cc75d98609f22769f5ce87050dac">InputsAtCompileTime</a> = Eigen::Dynamic,</div>
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<div class="line"><a id="l00315" name="l00315"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a1bff36d14c3e1f7a276d9fe6b564abdfac9e03a0ebbba30da72c7591639a69a09"> 315</a></span> <a class="code hl_enumvalue" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a1bff36d14c3e1f7a276d9fe6b564abdfac9e03a0ebbba30da72c7591639a69a09">ValuesAtCompileTime</a> = Eigen::Dynamic</div>
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<div class="line"><a id="l00316" name="l00316"></a><span class="lineno"> 316</span> };</div>
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<div class="line"><a id="l00317" name="l00317"></a><span class="lineno"> 317</span> </div>
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<div class="line"><a id="l00318" name="l00318"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a93b46ca95ddf9e4d21d02700621e6285"> 318</a></span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a>& <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a93b46ca95ddf9e4d21d02700621e6285">m_engine</a>; </div>
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<div class="line"><a id="l00319" name="l00319"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a2dca32a9e0bea5aea2a565f94b99a8de"> 319</a></span> <span class="keyword">const</span> std::vector<double>& <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a2dca32a9e0bea5aea2a565f94b99a8de">m_YFull</a>; </div>
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<div class="line"><a id="l00320" name="l00320"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a08ce53701b152f3ce108c1c18ce64de2"> 320</a></span> <span class="keyword">const</span> std::vector<size_t>& <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a08ce53701b152f3ce108c1c18ce64de2">m_dynamicSpeciesIndices</a>; </div>
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<div class="line"><a id="l00321" name="l00321"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#abaf28fdd93e881ef56c24f541be7492d"> 321</a></span> <span class="keyword">const</span> std::vector<size_t>& <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#abaf28fdd93e881ef56c24f541be7492d">m_QSESpeciesIndices</a>; </div>
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<div class="line"><a id="l00322" name="l00322"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a6771ae56ddd9058954b42ee92a378309"> 322</a></span> <span class="keyword">const</span> <span class="keywordtype">double</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a6771ae56ddd9058954b42ee92a378309">m_T9</a>; </div>
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<div class="line"><a id="l00323" name="l00323"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#ab0a0d4c166e97b971543cbbf2b0a1a2e"> 323</a></span> <span class="keyword">const</span> <span class="keywordtype">double</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#ab0a0d4c166e97b971543cbbf2b0a1a2e">m_rho</a>; </div>
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<div class="line"><a id="l00324" name="l00324"></a><span class="lineno"> 324</span></div>
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<div class="foldopen" id="foldopen00334" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00334" name="l00334"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a94a1e5994062c32bd45c248860be6fa4"> 334</a></span> <a class="code hl_function" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a94a1e5994062c32bd45c248860be6fa4">EigenFunctor</a>(</div>
|
||||
<div class="line"><a id="l00335" name="l00335"></a><span class="lineno"> 335</span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a>& engine,</div>
|
||||
<div class="line"><a id="l00336" name="l00336"></a><span class="lineno"> 336</span> <span class="keyword">const</span> std::vector<double>& YFull,</div>
|
||||
<div class="line"><a id="l00337" name="l00337"></a><span class="lineno"> 337</span> <span class="keyword">const</span> std::vector<size_t>& dynamicSpeciesIndices,</div>
|
||||
<div class="line"><a id="l00338" name="l00338"></a><span class="lineno"> 338</span> <span class="keyword">const</span> std::vector<size_t>& QSESpeciesIndices,</div>
|
||||
<div class="line"><a id="l00339" name="l00339"></a><span class="lineno"> 339</span> <span class="keyword">const</span> <span class="keywordtype">double</span> T9,</div>
|
||||
<div class="line"><a id="l00340" name="l00340"></a><span class="lineno"> 340</span> <span class="keyword">const</span> <span class="keywordtype">double</span> rho</div>
|
||||
<div class="line"><a id="l00341" name="l00341"></a><span class="lineno"> 341</span> ) :</div>
|
||||
<div class="line"><a id="l00342" name="l00342"></a><span class="lineno"> 342</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a93b46ca95ddf9e4d21d02700621e6285">m_engine</a>(engine),</div>
|
||||
<div class="line"><a id="l00343" name="l00343"></a><span class="lineno"> 343</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a2dca32a9e0bea5aea2a565f94b99a8de">m_YFull</a>(YFull),</div>
|
||||
<div class="line"><a id="l00344" name="l00344"></a><span class="lineno"> 344</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a08ce53701b152f3ce108c1c18ce64de2">m_dynamicSpeciesIndices</a>(dynamicSpeciesIndices),</div>
|
||||
<div class="line"><a id="l00345" name="l00345"></a><span class="lineno"> 345</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#abaf28fdd93e881ef56c24f541be7492d">m_QSESpeciesIndices</a>(QSESpeciesIndices),</div>
|
||||
<div class="line"><a id="l00346" name="l00346"></a><span class="lineno"> 346</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a6771ae56ddd9058954b42ee92a378309">m_T9</a>(T9),</div>
|
||||
<div class="line"><a id="l00347" name="l00347"></a><span class="lineno"> 347</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#ab0a0d4c166e97b971543cbbf2b0a1a2e">m_rho</a>(rho) {}</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00344" name="l00344"></a><span class="lineno"> 344</span></div>
|
||||
<div class="line"><a id="l00351" name="l00351"></a><span class="lineno"> 351</span> <span class="keywordtype">int</span> <a class="code hl_function" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a91c9c7c40c061dcfb6e57524e696676e">operator()</a>(<span class="keyword">const</span> <a class="code hl_typedef" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#ac4ec3c180a9778acdd604a9b80d25399">InputType</a>& v_QSE, <a class="code hl_typedef" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#abc86b32db81acf1b24feb3763dc4ddb0">OutputType</a>& f_QSE) <span class="keyword">const</span>;</div>
|
||||
<div class="line"><a id="l00352" name="l00352"></a><span class="lineno"> 352</span></div>
|
||||
<div class="line"><a id="l00359" name="l00359"></a><span class="lineno"> 359</span> <span class="keywordtype">int</span> <a class="code hl_function" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#ac46bd712296b03f31af1573f6a0f5644">df</a>(<span class="keyword">const</span> <a class="code hl_typedef" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#ac4ec3c180a9778acdd604a9b80d25399">InputType</a>& v_QSE, <a class="code hl_typedef" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#ad42fdb6d5ae06eaa6ddccf03eba0a50c">JacobianType</a>& J_QSE) <span class="keyword">const</span>;</div>
|
||||
<div class="line"><a id="l00360" name="l00360"></a><span class="lineno"> 360</span> };</div>
|
||||
<div class="line"><a id="l00348" name="l00348"></a><span class="lineno"> 348</span> </div>
|
||||
<div class="line"><a id="l00349" name="l00349"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#aa9730f06a604c3c95ccc33ab6f0f8878"> 349</a></span> <span class="keywordtype">int</span> <a class="code hl_function" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#aa9730f06a604c3c95ccc33ab6f0f8878">values</a>()<span class="keyword"> const </span>{ <span class="keywordflow">return</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#abaf28fdd93e881ef56c24f541be7492d">m_QSESpeciesIndices</a>.size(); }</div>
|
||||
<div class="line"><a id="l00350" name="l00350"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a5ce08aab2f1976c9258dad2b67e1c5b6"> 350</a></span> <span class="keywordtype">int</span> <a class="code hl_function" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a5ce08aab2f1976c9258dad2b67e1c5b6">inputs</a>()<span class="keyword"> const </span>{ <span class="keywordflow">return</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#abaf28fdd93e881ef56c24f541be7492d">m_QSESpeciesIndices</a>.size(); }</div>
|
||||
<div class="line"><a id="l00351" name="l00351"></a><span class="lineno"> 351</span></div>
|
||||
<div class="line"><a id="l00358" name="l00358"></a><span class="lineno"> 358</span> <span class="keywordtype">int</span> <a class="code hl_function" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a16dc10cb9c1392920f8d0ba95e0bc86e">operator()</a>(<span class="keyword">const</span> <a class="code hl_typedef" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#ac4ec3c180a9778acdd604a9b80d25399">InputType</a>& v_QSE_log, <a class="code hl_typedef" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#abc86b32db81acf1b24feb3763dc4ddb0">OutputType</a>& f_QSE) <span class="keyword">const</span>;</div>
|
||||
<div class="line"><a id="l00359" name="l00359"></a><span class="lineno"> 359</span></div>
|
||||
<div class="line"><a id="l00366" name="l00366"></a><span class="lineno"> 366</span> <span class="keywordtype">int</span> <a class="code hl_function" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a51687d7a9770164f79e485a763bd94b0">df</a>(<span class="keyword">const</span> <a class="code hl_typedef" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#ac4ec3c180a9778acdd604a9b80d25399">InputType</a>& v_QSE_log, <a class="code hl_typedef" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#ad42fdb6d5ae06eaa6ddccf03eba0a50c">JacobianType</a>& J_QSE) <span class="keyword">const</span>;</div>
|
||||
<div class="line"><a id="l00367" name="l00367"></a><span class="lineno"> 367</span> };</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00361" name="l00361"></a><span class="lineno"> 361</span> <span class="keyword">private</span>:</div>
|
||||
<div class="line"><a id="l00362" name="l00362"></a><span class="lineno"><a class="line" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7"> 362</a></span> quill::Logger* <a class="code hl_variable" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7">m_logger</a> = fourdst::logging::LogManager::getInstance().getLogger(<span class="stringliteral">"log"</span>); </div>
|
||||
<div class="line"><a id="l00363" name="l00363"></a><span class="lineno"><a class="line" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a7d19b6e50db34d38c81afec76bbedee1"> 363</a></span> fourdst::config::Config& <a class="code hl_variable" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a7d19b6e50db34d38c81afec76bbedee1">m_config</a> = fourdst::config::Config::getInstance(); </div>
|
||||
<div class="line"><a id="l00364" name="l00364"></a><span class="lineno"> 364</span> </div>
|
||||
<div class="line"><a id="l00365" name="l00365"></a><span class="lineno"><a class="line" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#ab07e68fd418ab058f890502d191b3f18"> 365</a></span> <span class="keywordtype">bool</span> <a class="code hl_variable" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#ab07e68fd418ab058f890502d191b3f18">m_isViewInitialized</a> = <span class="keyword">false</span>; </div>
|
||||
<div class="line"><a id="l00366" name="l00366"></a><span class="lineno"><a class="line" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a3c9d46c8f5c519854cd65309a588772f"> 366</a></span> <a class="code hl_struct" href="structgridfire_1_1_net_in.html">NetIn</a> <a class="code hl_variable" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a3c9d46c8f5c519854cd65309a588772f">m_lastSeenConditions</a>; </div>
|
||||
<div class="line"><a id="l00367" name="l00367"></a><span class="lineno"> 367</span> };</div>
|
||||
<div class="line"><a id="l00368" name="l00368"></a><span class="lineno"> 368</span> <span class="keyword">private</span>:</div>
|
||||
<div class="line"><a id="l00369" name="l00369"></a><span class="lineno"><a class="line" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7"> 369</a></span> quill::Logger* <a class="code hl_variable" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7">m_logger</a> = fourdst::logging::LogManager::getInstance().getLogger(<span class="stringliteral">"log"</span>); </div>
|
||||
<div class="line"><a id="l00370" name="l00370"></a><span class="lineno"><a class="line" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a7d19b6e50db34d38c81afec76bbedee1"> 370</a></span> fourdst::config::Config& <a class="code hl_variable" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a7d19b6e50db34d38c81afec76bbedee1">m_config</a> = fourdst::config::Config::getInstance(); </div>
|
||||
<div class="line"><a id="l00371" name="l00371"></a><span class="lineno"> 371</span> </div>
|
||||
<div class="line"><a id="l00372" name="l00372"></a><span class="lineno"><a class="line" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#ab07e68fd418ab058f890502d191b3f18"> 372</a></span> <span class="keywordtype">bool</span> <a class="code hl_variable" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#ab07e68fd418ab058f890502d191b3f18">m_isViewInitialized</a> = <span class="keyword">false</span>; </div>
|
||||
<div class="line"><a id="l00373" name="l00373"></a><span class="lineno"><a class="line" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a3c9d46c8f5c519854cd65309a588772f"> 373</a></span> <a class="code hl_struct" href="structgridfire_1_1_net_in.html">NetIn</a> <a class="code hl_variable" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a3c9d46c8f5c519854cd65309a588772f">m_lastSeenConditions</a>; </div>
|
||||
<div class="line"><a id="l00374" name="l00374"></a><span class="lineno"> 374</span> };</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00368" name="l00368"></a><span class="lineno"> 368</span></div>
|
||||
<div class="foldopen" id="foldopen00379" data-start="{" data-end="};">
|
||||
<div class="line"><a id="l00379" name="l00379"></a><span class="lineno"><a class="line" href="classgridfire_1_1solver_1_1_direct_network_solver.html"> 379</a></span> <span class="keyword">class </span><a class="code hl_class" href="classgridfire_1_1solver_1_1_direct_network_solver.html">DirectNetworkSolver</a> final : <span class="keyword">public</span> <a class="code hl_typedef" href="namespacegridfire_1_1solver.html#a8118d08bc25e439754b43a3f5ecc1db3">DynamicNetworkSolverStrategy</a> {</div>
|
||||
<div class="line"><a id="l00380" name="l00380"></a><span class="lineno"> 380</span> <span class="keyword">public</span>:</div>
|
||||
<div class="line"><a id="l00385" name="l00385"></a><span class="lineno"> 385</span> <span class="keyword">using </span>DynamicNetworkSolverStrategy::DynamicNetworkSolverStrategy;</div>
|
||||
<div class="line"><a id="l00386" name="l00386"></a><span class="lineno"> 386</span></div>
|
||||
<div class="line"><a id="l00392" name="l00392"></a><span class="lineno"> 392</span> <a class="code hl_struct" href="structgridfire_1_1_net_out.html">NetOut</a> <a class="code hl_function" href="classgridfire_1_1solver_1_1_direct_network_solver.html#a0e8a4b8ef656e0b084d11bea982e412a">evaluate</a>(<span class="keyword">const</span> <a class="code hl_struct" href="structgridfire_1_1_net_in.html">NetIn</a>& netIn) <span class="keyword">override</span>;</div>
|
||||
<div class="line"><a id="l00393" name="l00393"></a><span class="lineno"> 393</span> <span class="keyword">private</span>:</div>
|
||||
<div class="foldopen" id="foldopen00402" data-start="{" data-end="};">
|
||||
<div class="line"><a id="l00402" name="l00402"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html"> 402</a></span> <span class="keyword">struct </span><a class="code hl_function" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#aed201b52ea757069c17a49e9638b3d3c">RHSFunctor</a> {</div>
|
||||
<div class="line"><a id="l00403" name="l00403"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a04f8c84e46e6fbd0977e50fda4829d1a"> 403</a></span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a>& <a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a04f8c84e46e6fbd0977e50fda4829d1a">m_engine</a>; </div>
|
||||
<div class="line"><a id="l00404" name="l00404"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a082844f1eae0609e66620575210e8823"> 404</a></span> <span class="keyword">const</span> <span class="keywordtype">double</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a082844f1eae0609e66620575210e8823">m_T9</a>; </div>
|
||||
<div class="line"><a id="l00405" name="l00405"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a7d4f7f04c4ee6f0b519194f87aa265e7"> 405</a></span> <span class="keyword">const</span> <span class="keywordtype">double</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a7d4f7f04c4ee6f0b519194f87aa265e7">m_rho</a>; </div>
|
||||
<div class="line"><a id="l00406" name="l00406"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#ac4a1af03d2a4fbc5cc2407b8a6833147"> 406</a></span> <span class="keyword">const</span> <span class="keywordtype">size_t</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#ac4a1af03d2a4fbc5cc2407b8a6833147">m_numSpecies</a>; </div>
|
||||
<div class="line"><a id="l00407" name="l00407"></a><span class="lineno"> 407</span></div>
|
||||
<div class="foldopen" id="foldopen00414" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00414" name="l00414"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#aed201b52ea757069c17a49e9638b3d3c"> 414</a></span> <a class="code hl_function" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#aed201b52ea757069c17a49e9638b3d3c">RHSFunctor</a>(</div>
|
||||
<div class="line"><a id="l00415" name="l00415"></a><span class="lineno"> 415</span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a>& engine,</div>
|
||||
<div class="line"><a id="l00416" name="l00416"></a><span class="lineno"> 416</span> <span class="keyword">const</span> <span class="keywordtype">double</span> T9,</div>
|
||||
<div class="line"><a id="l00417" name="l00417"></a><span class="lineno"> 417</span> <span class="keyword">const</span> <span class="keywordtype">double</span> rho</div>
|
||||
<div class="line"><a id="l00418" name="l00418"></a><span class="lineno"> 418</span> ) :</div>
|
||||
<div class="line"><a id="l00419" name="l00419"></a><span class="lineno"> 419</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a04f8c84e46e6fbd0977e50fda4829d1a">m_engine</a>(engine),</div>
|
||||
<div class="line"><a id="l00420" name="l00420"></a><span class="lineno"> 420</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a082844f1eae0609e66620575210e8823">m_T9</a>(T9),</div>
|
||||
<div class="line"><a id="l00421" name="l00421"></a><span class="lineno"> 421</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a7d4f7f04c4ee6f0b519194f87aa265e7">m_rho</a>(rho),</div>
|
||||
<div class="line"><a id="l00422" name="l00422"></a><span class="lineno"> 422</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#ac4a1af03d2a4fbc5cc2407b8a6833147">m_numSpecies</a>(engine.getNetworkSpecies().size()) {}</div>
|
||||
<div class="line"><a id="l00375" name="l00375"></a><span class="lineno"> 375</span></div>
|
||||
<div class="foldopen" id="foldopen00386" data-start="{" data-end="};">
|
||||
<div class="line"><a id="l00386" name="l00386"></a><span class="lineno"><a class="line" href="classgridfire_1_1solver_1_1_direct_network_solver.html"> 386</a></span> <span class="keyword">class </span><a class="code hl_class" href="classgridfire_1_1solver_1_1_direct_network_solver.html">DirectNetworkSolver</a> final : <span class="keyword">public</span> <a class="code hl_typedef" href="namespacegridfire_1_1solver.html#a8118d08bc25e439754b43a3f5ecc1db3">DynamicNetworkSolverStrategy</a> {</div>
|
||||
<div class="line"><a id="l00387" name="l00387"></a><span class="lineno"> 387</span> <span class="keyword">public</span>:</div>
|
||||
<div class="line"><a id="l00392" name="l00392"></a><span class="lineno"> 392</span> <span class="keyword">using </span>DynamicNetworkSolverStrategy::DynamicNetworkSolverStrategy;</div>
|
||||
<div class="line"><a id="l00393" name="l00393"></a><span class="lineno"> 393</span></div>
|
||||
<div class="line"><a id="l00399" name="l00399"></a><span class="lineno"> 399</span> <a class="code hl_struct" href="structgridfire_1_1_net_out.html">NetOut</a> <a class="code hl_function" href="classgridfire_1_1solver_1_1_direct_network_solver.html#a0e8a4b8ef656e0b084d11bea982e412a">evaluate</a>(<span class="keyword">const</span> <a class="code hl_struct" href="structgridfire_1_1_net_in.html">NetIn</a>& netIn) <span class="keyword">override</span>;</div>
|
||||
<div class="line"><a id="l00400" name="l00400"></a><span class="lineno"> 400</span> <span class="keyword">private</span>:</div>
|
||||
<div class="foldopen" id="foldopen00409" data-start="{" data-end="};">
|
||||
<div class="line"><a id="l00409" name="l00409"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html"> 409</a></span> <span class="keyword">struct </span><a class="code hl_function" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#aed201b52ea757069c17a49e9638b3d3c">RHSFunctor</a> {</div>
|
||||
<div class="line"><a id="l00410" name="l00410"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a04f8c84e46e6fbd0977e50fda4829d1a"> 410</a></span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a>& <a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a04f8c84e46e6fbd0977e50fda4829d1a">m_engine</a>; </div>
|
||||
<div class="line"><a id="l00411" name="l00411"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a082844f1eae0609e66620575210e8823"> 411</a></span> <span class="keyword">const</span> <span class="keywordtype">double</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a082844f1eae0609e66620575210e8823">m_T9</a>; </div>
|
||||
<div class="line"><a id="l00412" name="l00412"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a7d4f7f04c4ee6f0b519194f87aa265e7"> 412</a></span> <span class="keyword">const</span> <span class="keywordtype">double</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a7d4f7f04c4ee6f0b519194f87aa265e7">m_rho</a>; </div>
|
||||
<div class="line"><a id="l00413" name="l00413"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#ac4a1af03d2a4fbc5cc2407b8a6833147"> 413</a></span> <span class="keyword">const</span> <span class="keywordtype">size_t</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#ac4a1af03d2a4fbc5cc2407b8a6833147">m_numSpecies</a>; </div>
|
||||
<div class="line"><a id="l00414" name="l00414"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a9cf3e5b5206b5cd8650cbf620ca5007b"> 414</a></span> quill::Logger* <a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a9cf3e5b5206b5cd8650cbf620ca5007b">m_logger</a> = LogManager::getInstance().getLogger(<span class="stringliteral">"log"</span>); </div>
|
||||
<div class="line"><a id="l00415" name="l00415"></a><span class="lineno"> 415</span></div>
|
||||
<div class="foldopen" id="foldopen00422" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00422" name="l00422"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#aed201b52ea757069c17a49e9638b3d3c"> 422</a></span> <a class="code hl_function" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#aed201b52ea757069c17a49e9638b3d3c">RHSFunctor</a>(</div>
|
||||
<div class="line"><a id="l00423" name="l00423"></a><span class="lineno"> 423</span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a>& engine,</div>
|
||||
<div class="line"><a id="l00424" name="l00424"></a><span class="lineno"> 424</span> <span class="keyword">const</span> <span class="keywordtype">double</span> T9,</div>
|
||||
<div class="line"><a id="l00425" name="l00425"></a><span class="lineno"> 425</span> <span class="keyword">const</span> <span class="keywordtype">double</span> rho</div>
|
||||
<div class="line"><a id="l00426" name="l00426"></a><span class="lineno"> 426</span> ) :</div>
|
||||
<div class="line"><a id="l00427" name="l00427"></a><span class="lineno"> 427</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a04f8c84e46e6fbd0977e50fda4829d1a">m_engine</a>(engine),</div>
|
||||
<div class="line"><a id="l00428" name="l00428"></a><span class="lineno"> 428</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a082844f1eae0609e66620575210e8823">m_T9</a>(T9),</div>
|
||||
<div class="line"><a id="l00429" name="l00429"></a><span class="lineno"> 429</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a7d4f7f04c4ee6f0b519194f87aa265e7">m_rho</a>(rho),</div>
|
||||
<div class="line"><a id="l00430" name="l00430"></a><span class="lineno"> 430</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#ac4a1af03d2a4fbc5cc2407b8a6833147">m_numSpecies</a>(engine.getNetworkSpecies().size()) {}</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00423" name="l00423"></a><span class="lineno"> 423</span></div>
|
||||
<div class="line"><a id="l00430" name="l00430"></a><span class="lineno"> 430</span> <span class="keywordtype">void</span> <a class="code hl_function" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a3a7542b6c6b4c86b6fe53f54d7232919">operator()</a>(</div>
|
||||
<div class="line"><a id="l00431" name="l00431"></a><span class="lineno"> 431</span> <span class="keyword">const</span> boost::numeric::ublas::vector<double>& Y,</div>
|
||||
<div class="line"><a id="l00432" name="l00432"></a><span class="lineno"> 432</span> boost::numeric::ublas::vector<double>& dYdt,</div>
|
||||
<div class="line"><a id="l00433" name="l00433"></a><span class="lineno"> 433</span> <span class="keywordtype">double</span> t</div>
|
||||
<div class="line"><a id="l00434" name="l00434"></a><span class="lineno"> 434</span> ) <span class="keyword">const</span>;</div>
|
||||
<div class="line"><a id="l00435" name="l00435"></a><span class="lineno"> 435</span> };</div>
|
||||
<div class="line"><a id="l00431" name="l00431"></a><span class="lineno"> 431</span></div>
|
||||
<div class="line"><a id="l00438" name="l00438"></a><span class="lineno"> 438</span> <span class="keywordtype">void</span> <a class="code hl_function" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a3a7542b6c6b4c86b6fe53f54d7232919">operator()</a>(</div>
|
||||
<div class="line"><a id="l00439" name="l00439"></a><span class="lineno"> 439</span> <span class="keyword">const</span> boost::numeric::ublas::vector<double>& Y,</div>
|
||||
<div class="line"><a id="l00440" name="l00440"></a><span class="lineno"> 440</span> boost::numeric::ublas::vector<double>& dYdt,</div>
|
||||
<div class="line"><a id="l00441" name="l00441"></a><span class="lineno"> 441</span> <span class="keywordtype">double</span> t</div>
|
||||
<div class="line"><a id="l00442" name="l00442"></a><span class="lineno"> 442</span> ) <span class="keyword">const</span>;</div>
|
||||
<div class="line"><a id="l00443" name="l00443"></a><span class="lineno"> 443</span> };</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00436" name="l00436"></a><span class="lineno"> 436</span></div>
|
||||
<div class="foldopen" id="foldopen00444" data-start="{" data-end="};">
|
||||
<div class="line"><a id="l00444" name="l00444"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html"> 444</a></span> <span class="keyword">struct </span><a class="code hl_function" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#afd2a548ffb907b0fb1fa28993ea99f25">JacobianFunctor</a> {</div>
|
||||
<div class="line"><a id="l00445" name="l00445"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a56f8b2b222fb2a7dac190ead0babfdd0"> 445</a></span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a>& <a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a56f8b2b222fb2a7dac190ead0babfdd0">m_engine</a>; </div>
|
||||
<div class="line"><a id="l00446" name="l00446"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a88f5fc48a555b369f1e2688d6bb67b83"> 446</a></span> <span class="keyword">const</span> <span class="keywordtype">double</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a88f5fc48a555b369f1e2688d6bb67b83">m_T9</a>; </div>
|
||||
<div class="line"><a id="l00447" name="l00447"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a932c41aa9f1aa38e56a03b27cd2ccda4"> 447</a></span> <span class="keyword">const</span> <span class="keywordtype">double</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a932c41aa9f1aa38e56a03b27cd2ccda4">m_rho</a>; </div>
|
||||
<div class="line"><a id="l00448" name="l00448"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a3f624142212b5e6ff65f5706953fe353"> 448</a></span> <span class="keyword">const</span> <span class="keywordtype">size_t</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a3f624142212b5e6ff65f5706953fe353">m_numSpecies</a>; </div>
|
||||
<div class="line"><a id="l00449" name="l00449"></a><span class="lineno"> 449</span></div>
|
||||
<div class="foldopen" id="foldopen00456" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00456" name="l00456"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#afd2a548ffb907b0fb1fa28993ea99f25"> 456</a></span> <a class="code hl_function" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#afd2a548ffb907b0fb1fa28993ea99f25">JacobianFunctor</a>(</div>
|
||||
<div class="line"><a id="l00457" name="l00457"></a><span class="lineno"> 457</span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a>& engine,</div>
|
||||
<div class="line"><a id="l00458" name="l00458"></a><span class="lineno"> 458</span> <span class="keyword">const</span> <span class="keywordtype">double</span> T9,</div>
|
||||
<div class="line"><a id="l00459" name="l00459"></a><span class="lineno"> 459</span> <span class="keyword">const</span> <span class="keywordtype">double</span> rho</div>
|
||||
<div class="line"><a id="l00460" name="l00460"></a><span class="lineno"> 460</span> ) :</div>
|
||||
<div class="line"><a id="l00461" name="l00461"></a><span class="lineno"> 461</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a56f8b2b222fb2a7dac190ead0babfdd0">m_engine</a>(engine),</div>
|
||||
<div class="line"><a id="l00462" name="l00462"></a><span class="lineno"> 462</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a88f5fc48a555b369f1e2688d6bb67b83">m_T9</a>(T9),</div>
|
||||
<div class="line"><a id="l00463" name="l00463"></a><span class="lineno"> 463</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a932c41aa9f1aa38e56a03b27cd2ccda4">m_rho</a>(rho),</div>
|
||||
<div class="line"><a id="l00464" name="l00464"></a><span class="lineno"> 464</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a3f624142212b5e6ff65f5706953fe353">m_numSpecies</a>(engine.getNetworkSpecies().size()) {}</div>
|
||||
<div class="line"><a id="l00444" name="l00444"></a><span class="lineno"> 444</span></div>
|
||||
<div class="foldopen" id="foldopen00452" data-start="{" data-end="};">
|
||||
<div class="line"><a id="l00452" name="l00452"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html"> 452</a></span> <span class="keyword">struct </span><a class="code hl_function" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#afd2a548ffb907b0fb1fa28993ea99f25">JacobianFunctor</a> {</div>
|
||||
<div class="line"><a id="l00453" name="l00453"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a56f8b2b222fb2a7dac190ead0babfdd0"> 453</a></span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a>& <a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a56f8b2b222fb2a7dac190ead0babfdd0">m_engine</a>; </div>
|
||||
<div class="line"><a id="l00454" name="l00454"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a88f5fc48a555b369f1e2688d6bb67b83"> 454</a></span> <span class="keyword">const</span> <span class="keywordtype">double</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a88f5fc48a555b369f1e2688d6bb67b83">m_T9</a>; </div>
|
||||
<div class="line"><a id="l00455" name="l00455"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a932c41aa9f1aa38e56a03b27cd2ccda4"> 455</a></span> <span class="keyword">const</span> <span class="keywordtype">double</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a932c41aa9f1aa38e56a03b27cd2ccda4">m_rho</a>; </div>
|
||||
<div class="line"><a id="l00456" name="l00456"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a3f624142212b5e6ff65f5706953fe353"> 456</a></span> <span class="keyword">const</span> <span class="keywordtype">size_t</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a3f624142212b5e6ff65f5706953fe353">m_numSpecies</a>; </div>
|
||||
<div class="line"><a id="l00457" name="l00457"></a><span class="lineno"> 457</span></div>
|
||||
<div class="foldopen" id="foldopen00464" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00464" name="l00464"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#afd2a548ffb907b0fb1fa28993ea99f25"> 464</a></span> <a class="code hl_function" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#afd2a548ffb907b0fb1fa28993ea99f25">JacobianFunctor</a>(</div>
|
||||
<div class="line"><a id="l00465" name="l00465"></a><span class="lineno"> 465</span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a>& engine,</div>
|
||||
<div class="line"><a id="l00466" name="l00466"></a><span class="lineno"> 466</span> <span class="keyword">const</span> <span class="keywordtype">double</span> T9,</div>
|
||||
<div class="line"><a id="l00467" name="l00467"></a><span class="lineno"> 467</span> <span class="keyword">const</span> <span class="keywordtype">double</span> rho</div>
|
||||
<div class="line"><a id="l00468" name="l00468"></a><span class="lineno"> 468</span> ) :</div>
|
||||
<div class="line"><a id="l00469" name="l00469"></a><span class="lineno"> 469</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a56f8b2b222fb2a7dac190ead0babfdd0">m_engine</a>(engine),</div>
|
||||
<div class="line"><a id="l00470" name="l00470"></a><span class="lineno"> 470</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a88f5fc48a555b369f1e2688d6bb67b83">m_T9</a>(T9),</div>
|
||||
<div class="line"><a id="l00471" name="l00471"></a><span class="lineno"> 471</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a932c41aa9f1aa38e56a03b27cd2ccda4">m_rho</a>(rho),</div>
|
||||
<div class="line"><a id="l00472" name="l00472"></a><span class="lineno"> 472</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a3f624142212b5e6ff65f5706953fe353">m_numSpecies</a>(engine.getNetworkSpecies().size()) {}</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00465" name="l00465"></a><span class="lineno"> 465</span></div>
|
||||
<div class="line"><a id="l00473" name="l00473"></a><span class="lineno"> 473</span> <span class="keywordtype">void</span> <a class="code hl_function" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#ad4fc0b406218aa2f567f5c61a4eda3c9">operator()</a>(</div>
|
||||
<div class="line"><a id="l00474" name="l00474"></a><span class="lineno"> 474</span> <span class="keyword">const</span> boost::numeric::ublas::vector<double>& Y,</div>
|
||||
<div class="line"><a id="l00475" name="l00475"></a><span class="lineno"> 475</span> boost::numeric::ublas::matrix<double>& J,</div>
|
||||
<div class="line"><a id="l00476" name="l00476"></a><span class="lineno"> 476</span> <span class="keywordtype">double</span> t,</div>
|
||||
<div class="line"><a id="l00477" name="l00477"></a><span class="lineno"> 477</span> boost::numeric::ublas::vector<double>& dfdt</div>
|
||||
<div class="line"><a id="l00478" name="l00478"></a><span class="lineno"> 478</span> ) <span class="keyword">const</span>;</div>
|
||||
<div class="line"><a id="l00479" name="l00479"></a><span class="lineno"> 479</span> </div>
|
||||
<div class="line"><a id="l00480" name="l00480"></a><span class="lineno"> 480</span> };</div>
|
||||
<div class="line"><a id="l00473" name="l00473"></a><span class="lineno"> 473</span></div>
|
||||
<div class="line"><a id="l00481" name="l00481"></a><span class="lineno"> 481</span> <span class="keywordtype">void</span> <a class="code hl_function" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#ad4fc0b406218aa2f567f5c61a4eda3c9">operator()</a>(</div>
|
||||
<div class="line"><a id="l00482" name="l00482"></a><span class="lineno"> 482</span> <span class="keyword">const</span> boost::numeric::ublas::vector<double>& Y,</div>
|
||||
<div class="line"><a id="l00483" name="l00483"></a><span class="lineno"> 483</span> boost::numeric::ublas::matrix<double>& J,</div>
|
||||
<div class="line"><a id="l00484" name="l00484"></a><span class="lineno"> 484</span> <span class="keywordtype">double</span> t,</div>
|
||||
<div class="line"><a id="l00485" name="l00485"></a><span class="lineno"> 485</span> boost::numeric::ublas::vector<double>& dfdt</div>
|
||||
<div class="line"><a id="l00486" name="l00486"></a><span class="lineno"> 486</span> ) <span class="keyword">const</span>;</div>
|
||||
<div class="line"><a id="l00487" name="l00487"></a><span class="lineno"> 487</span> </div>
|
||||
<div class="line"><a id="l00488" name="l00488"></a><span class="lineno"> 488</span> };</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00481" name="l00481"></a><span class="lineno"> 481</span> </div>
|
||||
<div class="line"><a id="l00482" name="l00482"></a><span class="lineno"> 482</span> <span class="keyword">private</span>:</div>
|
||||
<div class="line"><a id="l00483" name="l00483"></a><span class="lineno"><a class="line" href="classgridfire_1_1solver_1_1_direct_network_solver.html#a093aa89fd23c2fe03266e286871c7079"> 483</a></span> quill::Logger* <a class="code hl_variable" href="classgridfire_1_1solver_1_1_direct_network_solver.html#a093aa89fd23c2fe03266e286871c7079">m_logger</a> = fourdst::logging::LogManager::getInstance().getLogger(<span class="stringliteral">"log"</span>); </div>
|
||||
<div class="line"><a id="l00484" name="l00484"></a><span class="lineno"><a class="line" href="classgridfire_1_1solver_1_1_direct_network_solver.html#a0d1b52d06b0521e7c556d75cd8d2ffe6"> 484</a></span> fourdst::config::Config& <a class="code hl_variable" href="classgridfire_1_1solver_1_1_direct_network_solver.html#a0d1b52d06b0521e7c556d75cd8d2ffe6">m_config</a> = fourdst::config::Config::getInstance(); </div>
|
||||
<div class="line"><a id="l00485" name="l00485"></a><span class="lineno"> 485</span> };</div>
|
||||
<div class="line"><a id="l00489" name="l00489"></a><span class="lineno"> 489</span> </div>
|
||||
<div class="line"><a id="l00490" name="l00490"></a><span class="lineno"> 490</span> <span class="keyword">private</span>:</div>
|
||||
<div class="line"><a id="l00491" name="l00491"></a><span class="lineno"><a class="line" href="classgridfire_1_1solver_1_1_direct_network_solver.html#a093aa89fd23c2fe03266e286871c7079"> 491</a></span> quill::Logger* <a class="code hl_variable" href="classgridfire_1_1solver_1_1_direct_network_solver.html#a093aa89fd23c2fe03266e286871c7079">m_logger</a> = fourdst::logging::LogManager::getInstance().getLogger(<span class="stringliteral">"log"</span>); </div>
|
||||
<div class="line"><a id="l00492" name="l00492"></a><span class="lineno"><a class="line" href="classgridfire_1_1solver_1_1_direct_network_solver.html#a0d1b52d06b0521e7c556d75cd8d2ffe6"> 492</a></span> fourdst::config::Config& <a class="code hl_variable" href="classgridfire_1_1solver_1_1_direct_network_solver.html#a0d1b52d06b0521e7c556d75cd8d2ffe6">m_config</a> = fourdst::config::Config::getInstance(); </div>
|
||||
<div class="line"><a id="l00493" name="l00493"></a><span class="lineno"> 493</span> };</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00486" name="l00486"></a><span class="lineno"> 486</span> </div>
|
||||
<div class="line"><a id="l00487" name="l00487"></a><span class="lineno"> 487</span> <span class="keyword">template</span><<span class="keyword">typename</span> T></div>
|
||||
<div class="foldopen" id="foldopen00488" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00488" name="l00488"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a91c9c7c40c061dcfb6e57524e696676e"> 488</a></span> <span class="keywordtype">int</span> <a class="code hl_function" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a91c9c7c40c061dcfb6e57524e696676e">QSENetworkSolver::EigenFunctor<T>::operator()</a>(<span class="keyword">const</span> <a class="code hl_typedef" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#ac4ec3c180a9778acdd604a9b80d25399">InputType</a> &v_QSE, <a class="code hl_typedef" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#abc86b32db81acf1b24feb3763dc4ddb0">OutputType</a> &f_QSE)<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00489" name="l00489"></a><span class="lineno"> 489</span> std::vector<double> YFull(<a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a93b46ca95ddf9e4d21d02700621e6285">m_engine</a>.getNetworkSpecies().size(), 0.0);</div>
|
||||
<div class="line"><a id="l00490" name="l00490"></a><span class="lineno"> 490</span> Eigen::VectorXd Y_QSE(v_QSE.array().exp());</div>
|
||||
<div class="line"><a id="l00491" name="l00491"></a><span class="lineno"> 491</span> <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i = 0; i < <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a08ce53701b152f3ce108c1c18ce64de2">m_dynamicSpeciesIndices</a>.size(); ++i) {</div>
|
||||
<div class="line"><a id="l00492" name="l00492"></a><span class="lineno"> 492</span> YFull[<a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a08ce53701b152f3ce108c1c18ce64de2">m_dynamicSpeciesIndices</a>[i]] = <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#af4f10300bde1e8e07b896bfca6335401">m_YDynamic</a>[i];</div>
|
||||
<div class="line"><a id="l00493" name="l00493"></a><span class="lineno"> 493</span> }</div>
|
||||
<div class="line"><a id="l00494" name="l00494"></a><span class="lineno"> 494</span> <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i = 0; i < <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#abaf28fdd93e881ef56c24f541be7492d">m_QSESpeciesIndices</a>.size(); ++i) {</div>
|
||||
<div class="line"><a id="l00495" name="l00495"></a><span class="lineno"> 495</span> YFull[<a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#abaf28fdd93e881ef56c24f541be7492d">m_QSESpeciesIndices</a>[i]] = Y_QSE(i);</div>
|
||||
<div class="line"><a id="l00496" name="l00496"></a><span class="lineno"> 496</span> }</div>
|
||||
<div class="line"><a id="l00497" name="l00497"></a><span class="lineno"> 497</span> <span class="keyword">const</span> <span class="keyword">auto</span> [full_dYdt, specificEnergyGenerationRate] = <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a93b46ca95ddf9e4d21d02700621e6285">m_engine</a>.calculateRHSAndEnergy(YFull, <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a6771ae56ddd9058954b42ee92a378309">m_T9</a>, <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#ab0a0d4c166e97b971543cbbf2b0a1a2e">m_rho</a>);</div>
|
||||
<div class="line"><a id="l00498" name="l00498"></a><span class="lineno"> 498</span> f_QSE.resize(<a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#abaf28fdd93e881ef56c24f541be7492d">m_QSESpeciesIndices</a>.size());</div>
|
||||
<div class="line"><a id="l00499" name="l00499"></a><span class="lineno"> 499</span> <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i = 0; i < <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#abaf28fdd93e881ef56c24f541be7492d">m_QSESpeciesIndices</a>.size(); ++i) {</div>
|
||||
<div class="line"><a id="l00500" name="l00500"></a><span class="lineno"> 500</span> f_QSE(i) = full_dYdt[<a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#abaf28fdd93e881ef56c24f541be7492d">m_QSESpeciesIndices</a>[i]];</div>
|
||||
<div class="line"><a id="l00501" name="l00501"></a><span class="lineno"> 501</span> }</div>
|
||||
<div class="line"><a id="l00502" name="l00502"></a><span class="lineno"> 502</span> </div>
|
||||
<div class="line"><a id="l00503" name="l00503"></a><span class="lineno"> 503</span> <span class="keywordflow">return</span> 0; <span class="comment">// Success</span></div>
|
||||
<div class="line"><a id="l00504" name="l00504"></a><span class="lineno"> 504</span> }</div>
|
||||
<div class="line"><a id="l00494" name="l00494"></a><span class="lineno"> 494</span> </div>
|
||||
<div class="line"><a id="l00495" name="l00495"></a><span class="lineno"> 495</span> <span class="keyword">template</span><<span class="keyword">typename</span> T></div>
|
||||
<div class="foldopen" id="foldopen00496" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00496" name="l00496"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a16dc10cb9c1392920f8d0ba95e0bc86e"> 496</a></span> <span class="keywordtype">int</span> <a class="code hl_function" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a16dc10cb9c1392920f8d0ba95e0bc86e">QSENetworkSolver::EigenFunctor<T>::operator()</a>(<span class="keyword">const</span> <a class="code hl_typedef" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#ac4ec3c180a9778acdd604a9b80d25399">InputType</a> &v_QSE_log, <a class="code hl_typedef" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#abc86b32db81acf1b24feb3763dc4ddb0">OutputType</a> &f_QSE)<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00497" name="l00497"></a><span class="lineno"> 497</span> std::vector<double> y = <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a2dca32a9e0bea5aea2a565f94b99a8de">m_YFull</a>; <span class="comment">// Full vector of species abundances</span></div>
|
||||
<div class="line"><a id="l00498" name="l00498"></a><span class="lineno"> 498</span> Eigen::VectorXd Y_QSE = v_QSE_log.array().exp();</div>
|
||||
<div class="line"><a id="l00499" name="l00499"></a><span class="lineno"> 499</span> </div>
|
||||
<div class="line"><a id="l00500" name="l00500"></a><span class="lineno"> 500</span> <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i = 0; i < <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#abaf28fdd93e881ef56c24f541be7492d">m_QSESpeciesIndices</a>.size(); ++i) {</div>
|
||||
<div class="line"><a id="l00501" name="l00501"></a><span class="lineno"> 501</span> y[<a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#abaf28fdd93e881ef56c24f541be7492d">m_QSESpeciesIndices</a>[i]] = Y_QSE(i);</div>
|
||||
<div class="line"><a id="l00502" name="l00502"></a><span class="lineno"> 502</span> }</div>
|
||||
<div class="line"><a id="l00503" name="l00503"></a><span class="lineno"> 503</span> </div>
|
||||
<div class="line"><a id="l00504" name="l00504"></a><span class="lineno"> 504</span> </div>
|
||||
<div class="line"><a id="l00505" name="l00505"></a><span class="lineno"> 505</span> <span class="keyword">const</span> <span class="keyword">auto</span> [dydt, specificEnergyRate] = <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a93b46ca95ddf9e4d21d02700621e6285">m_engine</a>.calculateRHSAndEnergy(y, <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a6771ae56ddd9058954b42ee92a378309">m_T9</a>, <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#ab0a0d4c166e97b971543cbbf2b0a1a2e">m_rho</a>);</div>
|
||||
<div class="line"><a id="l00506" name="l00506"></a><span class="lineno"> 506</span> f_QSE.resize(<a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#abaf28fdd93e881ef56c24f541be7492d">m_QSESpeciesIndices</a>.size());</div>
|
||||
<div class="line"><a id="l00507" name="l00507"></a><span class="lineno"> 507</span> <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i = 0; i < <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#abaf28fdd93e881ef56c24f541be7492d">m_QSESpeciesIndices</a>.size(); ++i) {</div>
|
||||
<div class="line"><a id="l00508" name="l00508"></a><span class="lineno"> 508</span> f_QSE(i) = dydt[<a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#abaf28fdd93e881ef56c24f541be7492d">m_QSESpeciesIndices</a>[i]];</div>
|
||||
<div class="line"><a id="l00509" name="l00509"></a><span class="lineno"> 509</span> }</div>
|
||||
<div class="line"><a id="l00510" name="l00510"></a><span class="lineno"> 510</span> <span class="keywordflow">return</span> 0; <span class="comment">// Success</span></div>
|
||||
<div class="line"><a id="l00511" name="l00511"></a><span class="lineno"> 511</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00505" name="l00505"></a><span class="lineno"> 505</span> </div>
|
||||
<div class="line"><a id="l00506" name="l00506"></a><span class="lineno"> 506</span> <span class="keyword">template</span> <<span class="keyword">typename</span> T></div>
|
||||
<div class="foldopen" id="foldopen00507" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00507" name="l00507"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#ac46bd712296b03f31af1573f6a0f5644"> 507</a></span> <span class="keywordtype">int</span> <a class="code hl_function" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#ac46bd712296b03f31af1573f6a0f5644">QSENetworkSolver::EigenFunctor<T>::df</a>(<span class="keyword">const</span> <a class="code hl_typedef" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#ac4ec3c180a9778acdd604a9b80d25399">InputType</a>& v_QSE, <a class="code hl_typedef" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#ad42fdb6d5ae06eaa6ddccf03eba0a50c">JacobianType</a>& J_QSE)<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00508" name="l00508"></a><span class="lineno"> 508</span> std::vector<double> YFull(<a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a93b46ca95ddf9e4d21d02700621e6285">m_engine</a>.getNetworkSpecies().size(), 0.0);</div>
|
||||
<div class="line"><a id="l00509" name="l00509"></a><span class="lineno"> 509</span> Eigen::VectorXd Y_QSE(v_QSE.array().exp());</div>
|
||||
<div class="line"><a id="l00510" name="l00510"></a><span class="lineno"> 510</span> <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i = 0; i < <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a08ce53701b152f3ce108c1c18ce64de2">m_dynamicSpeciesIndices</a>.size(); ++i) {</div>
|
||||
<div class="line"><a id="l00511" name="l00511"></a><span class="lineno"> 511</span> YFull[<a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a08ce53701b152f3ce108c1c18ce64de2">m_dynamicSpeciesIndices</a>[i]] = <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#af4f10300bde1e8e07b896bfca6335401">m_YDynamic</a>[i];</div>
|
||||
<div class="line"><a id="l00512" name="l00512"></a><span class="lineno"> 512</span> }</div>
|
||||
<div class="line"><a id="l00513" name="l00513"></a><span class="lineno"> 513</span> <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i = 0; i < <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#abaf28fdd93e881ef56c24f541be7492d">m_QSESpeciesIndices</a>.size(); ++i) {</div>
|
||||
<div class="line"><a id="l00514" name="l00514"></a><span class="lineno"> 514</span> YFull[<a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#abaf28fdd93e881ef56c24f541be7492d">m_QSESpeciesIndices</a>[i]] = Y_QSE(i);</div>
|
||||
<div class="line"><a id="l00515" name="l00515"></a><span class="lineno"> 515</span> }</div>
|
||||
<div class="line"><a id="l00516" name="l00516"></a><span class="lineno"> 516</span> </div>
|
||||
<div class="line"><a id="l00517" name="l00517"></a><span class="lineno"> 517</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a93b46ca95ddf9e4d21d02700621e6285">m_engine</a>.generateJacobianMatrix(YFull, <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a6771ae56ddd9058954b42ee92a378309">m_T9</a>, <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#ab0a0d4c166e97b971543cbbf2b0a1a2e">m_rho</a>);</div>
|
||||
<div class="line"><a id="l00518" name="l00518"></a><span class="lineno"> 518</span> </div>
|
||||
<div class="line"><a id="l00519" name="l00519"></a><span class="lineno"> 519</span> Eigen::MatrixXd J_orig(<a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#abaf28fdd93e881ef56c24f541be7492d">m_QSESpeciesIndices</a>.size(), <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#abaf28fdd93e881ef56c24f541be7492d">m_QSESpeciesIndices</a>.size());</div>
|
||||
<div class="line"><a id="l00520" name="l00520"></a><span class="lineno"> 520</span> <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i = 0; i < <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#abaf28fdd93e881ef56c24f541be7492d">m_QSESpeciesIndices</a>.size(); ++i) {</div>
|
||||
<div class="line"><a id="l00521" name="l00521"></a><span class="lineno"> 521</span> <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> j = 0; j < <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#abaf28fdd93e881ef56c24f541be7492d">m_QSESpeciesIndices</a>.size(); ++j) {</div>
|
||||
<div class="line"><a id="l00522" name="l00522"></a><span class="lineno"> 522</span> J_orig(i, j) = <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a93b46ca95ddf9e4d21d02700621e6285">m_engine</a>.getJacobianMatrixEntry(<a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#abaf28fdd93e881ef56c24f541be7492d">m_QSESpeciesIndices</a>[i], <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#abaf28fdd93e881ef56c24f541be7492d">m_QSESpeciesIndices</a>[j]);</div>
|
||||
<div class="line"><a id="l00523" name="l00523"></a><span class="lineno"> 523</span> }</div>
|
||||
<div class="line"><a id="l00524" name="l00524"></a><span class="lineno"> 524</span> }</div>
|
||||
<div class="line"><a id="l00525" name="l00525"></a><span class="lineno"> 525</span> </div>
|
||||
<div class="line"><a id="l00526" name="l00526"></a><span class="lineno"> 526</span> J_QSE = J_orig;</div>
|
||||
<div class="line"><a id="l00527" name="l00527"></a><span class="lineno"> 527</span> <span class="keywordflow">for</span> (<span class="keywordtype">long</span> j = 0; j < J_QSE.cols(); ++j) {</div>
|
||||
<div class="line"><a id="l00528" name="l00528"></a><span class="lineno"> 528</span> J_QSE.col(j) *= Y_QSE(j); <span class="comment">// Chain rule for log space</span></div>
|
||||
<div class="line"><a id="l00512" name="l00512"></a><span class="lineno"> 512</span> </div>
|
||||
<div class="line"><a id="l00513" name="l00513"></a><span class="lineno"> 513</span> <span class="keyword">template</span> <<span class="keyword">typename</span> T></div>
|
||||
<div class="foldopen" id="foldopen00514" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00514" name="l00514"></a><span class="lineno"><a class="line" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a51687d7a9770164f79e485a763bd94b0"> 514</a></span> <span class="keywordtype">int</span> <a class="code hl_function" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a51687d7a9770164f79e485a763bd94b0">QSENetworkSolver::EigenFunctor<T>::df</a>(<span class="keyword">const</span> <a class="code hl_typedef" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#ac4ec3c180a9778acdd604a9b80d25399">InputType</a>& v_QSE_log, <a class="code hl_typedef" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#ad42fdb6d5ae06eaa6ddccf03eba0a50c">JacobianType</a>& J_QSE)<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00515" name="l00515"></a><span class="lineno"> 515</span> std::vector<double> y = <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a2dca32a9e0bea5aea2a565f94b99a8de">m_YFull</a>;</div>
|
||||
<div class="line"><a id="l00516" name="l00516"></a><span class="lineno"> 516</span> Eigen::VectorXd Y_QSE = v_QSE_log.array().exp();</div>
|
||||
<div class="line"><a id="l00517" name="l00517"></a><span class="lineno"> 517</span> </div>
|
||||
<div class="line"><a id="l00518" name="l00518"></a><span class="lineno"> 518</span> <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i = 0; i < <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#abaf28fdd93e881ef56c24f541be7492d">m_QSESpeciesIndices</a>.size(); ++i) {</div>
|
||||
<div class="line"><a id="l00519" name="l00519"></a><span class="lineno"> 519</span> y[<a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#abaf28fdd93e881ef56c24f541be7492d">m_QSESpeciesIndices</a>[i]] = Y_QSE(i);</div>
|
||||
<div class="line"><a id="l00520" name="l00520"></a><span class="lineno"> 520</span> }</div>
|
||||
<div class="line"><a id="l00521" name="l00521"></a><span class="lineno"> 521</span> </div>
|
||||
<div class="line"><a id="l00522" name="l00522"></a><span class="lineno"> 522</span> <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a93b46ca95ddf9e4d21d02700621e6285">m_engine</a>.generateJacobianMatrix(y, <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a6771ae56ddd9058954b42ee92a378309">m_T9</a>, <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#ab0a0d4c166e97b971543cbbf2b0a1a2e">m_rho</a>);</div>
|
||||
<div class="line"><a id="l00523" name="l00523"></a><span class="lineno"> 523</span> </div>
|
||||
<div class="line"><a id="l00524" name="l00524"></a><span class="lineno"> 524</span> J_QSE.resize(<a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#abaf28fdd93e881ef56c24f541be7492d">m_QSESpeciesIndices</a>.size(), <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#abaf28fdd93e881ef56c24f541be7492d">m_QSESpeciesIndices</a>.size());</div>
|
||||
<div class="line"><a id="l00525" name="l00525"></a><span class="lineno"> 525</span> <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i = 0; i < <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#abaf28fdd93e881ef56c24f541be7492d">m_QSESpeciesIndices</a>.size(); ++i) {</div>
|
||||
<div class="line"><a id="l00526" name="l00526"></a><span class="lineno"> 526</span> <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> j = 0; j < <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#abaf28fdd93e881ef56c24f541be7492d">m_QSESpeciesIndices</a>.size(); ++j) {</div>
|
||||
<div class="line"><a id="l00527" name="l00527"></a><span class="lineno"> 527</span> J_QSE(i, j) = <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a93b46ca95ddf9e4d21d02700621e6285">m_engine</a>.getJacobianMatrixEntry(<a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#abaf28fdd93e881ef56c24f541be7492d">m_QSESpeciesIndices</a>[i], <a class="code hl_variable" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#abaf28fdd93e881ef56c24f541be7492d">m_QSESpeciesIndices</a>[j]);</div>
|
||||
<div class="line"><a id="l00528" name="l00528"></a><span class="lineno"> 528</span> }</div>
|
||||
<div class="line"><a id="l00529" name="l00529"></a><span class="lineno"> 529</span> }</div>
|
||||
<div class="line"><a id="l00530" name="l00530"></a><span class="lineno"> 530</span> <span class="keywordflow">return</span> 0; <span class="comment">// Success</span></div>
|
||||
<div class="line"><a id="l00531" name="l00531"></a><span class="lineno"> 531</span> }</div>
|
||||
<div class="line"><a id="l00530" name="l00530"></a><span class="lineno"> 530</span> </div>
|
||||
<div class="line"><a id="l00531" name="l00531"></a><span class="lineno"> 531</span> <span class="keywordflow">for</span> (<span class="keywordtype">long</span> j = 0; j < J_QSE.cols(); ++j) {</div>
|
||||
<div class="line"><a id="l00532" name="l00532"></a><span class="lineno"> 532</span> J_QSE(j, j) *= Y_QSE(j); <span class="comment">// chain rule for log space transformation</span></div>
|
||||
<div class="line"><a id="l00533" name="l00533"></a><span class="lineno"> 533</span> }</div>
|
||||
<div class="line"><a id="l00534" name="l00534"></a><span class="lineno"> 534</span> <span class="keywordflow">return</span> 0;</div>
|
||||
<div class="line"><a id="l00535" name="l00535"></a><span class="lineno"> 535</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00532" name="l00532"></a><span class="lineno"> 532</span> </div>
|
||||
<div class="line"><a id="l00533" name="l00533"></a><span class="lineno"> 533</span> </div>
|
||||
<div class="line"><a id="l00534" name="l00534"></a><span class="lineno"> 534</span>}</div>
|
||||
<div class="line"><a id="l00536" name="l00536"></a><span class="lineno"> 536</span> </div>
|
||||
<div class="line"><a id="l00537" name="l00537"></a><span class="lineno"> 537</span> </div>
|
||||
<div class="line"><a id="l00538" name="l00538"></a><span class="lineno"> 538</span>}</div>
|
||||
</div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_dynamic_engine_html"><div class="ttname"><a href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></div><div class="ttdoc">Abstract class for engines supporting Jacobian and stoichiometry operations.</div><div class="ttdef"><b>Definition</b> <a href="engine__abstract_8h_source.html#l00118">engine_abstract.h:118</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1solver_1_1_direct_network_solver_html"><div class="ttname"><a href="classgridfire_1_1solver_1_1_direct_network_solver.html">gridfire::solver::DirectNetworkSolver</a></div><div class="ttdoc">A network solver that directly integrates the reaction network ODEs.</div><div class="ttdef"><b>Definition</b> <a href="#l00379">solver.h:379</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1solver_1_1_direct_network_solver_html_a093aa89fd23c2fe03266e286871c7079"><div class="ttname"><a href="classgridfire_1_1solver_1_1_direct_network_solver.html#a093aa89fd23c2fe03266e286871c7079">gridfire::solver::DirectNetworkSolver::m_logger</a></div><div class="ttdeci">quill::Logger * m_logger</div><div class="ttdoc">Logger instance.</div><div class="ttdef"><b>Definition</b> <a href="#l00483">solver.h:483</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1solver_1_1_direct_network_solver_html_a0d1b52d06b0521e7c556d75cd8d2ffe6"><div class="ttname"><a href="classgridfire_1_1solver_1_1_direct_network_solver.html#a0d1b52d06b0521e7c556d75cd8d2ffe6">gridfire::solver::DirectNetworkSolver::m_config</a></div><div class="ttdeci">fourdst::config::Config & m_config</div><div class="ttdoc">Configuration instance.</div><div class="ttdef"><b>Definition</b> <a href="#l00484">solver.h:484</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1solver_1_1_direct_network_solver_html_a0e8a4b8ef656e0b084d11bea982e412a"><div class="ttname"><a href="classgridfire_1_1solver_1_1_direct_network_solver.html#a0e8a4b8ef656e0b084d11bea982e412a">gridfire::solver::DirectNetworkSolver::evaluate</a></div><div class="ttdeci">NetOut evaluate(const NetIn &netIn) override</div><div class="ttdoc">Evaluates the network for a given timestep using direct integration.</div><div class="ttdef"><b>Definition</b> <a href="solver_8cpp_source.html#l00308">solver.cpp:308</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_dynamic_engine_html"><div class="ttname"><a href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></div><div class="ttdoc">Abstract class for engines supporting Jacobian and stoichiometry operations.</div><div class="ttdef"><b>Definition</b> <a href="engine__abstract_8h_source.html#l00121">engine_abstract.h:121</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1solver_1_1_direct_network_solver_html"><div class="ttname"><a href="classgridfire_1_1solver_1_1_direct_network_solver.html">gridfire::solver::DirectNetworkSolver</a></div><div class="ttdoc">A network solver that directly integrates the reaction network ODEs.</div><div class="ttdef"><b>Definition</b> <a href="#l00386">solver.h:386</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1solver_1_1_direct_network_solver_html_a093aa89fd23c2fe03266e286871c7079"><div class="ttname"><a href="classgridfire_1_1solver_1_1_direct_network_solver.html#a093aa89fd23c2fe03266e286871c7079">gridfire::solver::DirectNetworkSolver::m_logger</a></div><div class="ttdeci">quill::Logger * m_logger</div><div class="ttdoc">Logger instance.</div><div class="ttdef"><b>Definition</b> <a href="#l00491">solver.h:491</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1solver_1_1_direct_network_solver_html_a0d1b52d06b0521e7c556d75cd8d2ffe6"><div class="ttname"><a href="classgridfire_1_1solver_1_1_direct_network_solver.html#a0d1b52d06b0521e7c556d75cd8d2ffe6">gridfire::solver::DirectNetworkSolver::m_config</a></div><div class="ttdeci">fourdst::config::Config & m_config</div><div class="ttdoc">Configuration instance.</div><div class="ttdef"><b>Definition</b> <a href="#l00492">solver.h:492</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1solver_1_1_direct_network_solver_html_a0e8a4b8ef656e0b084d11bea982e412a"><div class="ttname"><a href="classgridfire_1_1solver_1_1_direct_network_solver.html#a0e8a4b8ef656e0b084d11bea982e412a">gridfire::solver::DirectNetworkSolver::evaluate</a></div><div class="ttdeci">NetOut evaluate(const NetIn &netIn) override</div><div class="ttdoc">Evaluates the network for a given timestep using direct integration.</div><div class="ttdef"><b>Definition</b> <a href="solver_8cpp_source.html#l00375">solver.cpp:375</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1solver_1_1_network_solver_strategy_html"><div class="ttname"><a href="classgridfire_1_1solver_1_1_network_solver_strategy.html">gridfire::solver::NetworkSolverStrategy</a></div><div class="ttdoc">Abstract base class for network solver strategies.</div><div class="ttdef"><b>Definition</b> <a href="#l00043">solver.h:43</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1solver_1_1_network_solver_strategy_html_a01cbbec0eb5c3a60f50da38cdaf66505"><div class="ttname"><a href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a01cbbec0eb5c3a60f50da38cdaf66505">gridfire::solver::NetworkSolverStrategy::NetworkSolverStrategy</a></div><div class="ttdeci">NetworkSolverStrategy(EngineT &engine)</div><div class="ttdoc">Constructor for the NetworkSolverStrategy.</div><div class="ttdef"><b>Definition</b> <a href="#l00049">solver.h:49</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1solver_1_1_network_solver_strategy_html_a1693dc93f63599c89587d729aca8e318"><div class="ttname"><a href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a1693dc93f63599c89587d729aca8e318">gridfire::solver::NetworkSolverStrategy::~NetworkSolverStrategy</a></div><div class="ttdeci">virtual ~NetworkSolverStrategy()=default</div><div class="ttdoc">Virtual destructor.</div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1solver_1_1_network_solver_strategy_html_a724924d94eaf82b67d9988a55c3261e8"><div class="ttname"><a href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8">gridfire::solver::NetworkSolverStrategy< DynamicEngine >::m_engine</a></div><div class="ttdeci">DynamicEngine & m_engine</div><div class="ttdef"><b>Definition</b> <a href="#l00063">solver.h:63</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1solver_1_1_network_solver_strategy_html_ace539b0482db171845ff1bd38d76b70f"><div class="ttname"><a href="classgridfire_1_1solver_1_1_network_solver_strategy.html#ace539b0482db171845ff1bd38d76b70f">gridfire::solver::NetworkSolverStrategy::evaluate</a></div><div class="ttdeci">virtual NetOut evaluate(const NetIn &netIn)=0</div><div class="ttdoc">Evaluates the network for a given timestep.</div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1solver_1_1_q_s_e_network_solver_html"><div class="ttname"><a href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html">gridfire::solver::QSENetworkSolver</a></div><div class="ttdoc">A network solver that uses a Quasi-Steady-State Equilibrium (QSE) approach.</div><div class="ttdef"><b>Definition</b> <a href="#l00098">solver.h:98</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1solver_1_1_q_s_e_network_solver_html_a00d112f6087f6e3a93f4d40a519308d2"><div class="ttname"><a href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a00d112f6087f6e3a93f4d40a519308d2">gridfire::solver::QSENetworkSolver::calculateSteadyStateAbundances</a></div><div class="ttdeci">Eigen::VectorXd calculateSteadyStateAbundances(const std::vector< double > &Y, const double T9, const double rho, const dynamicQSESpeciesIndices &indices) const</div><div class="ttdoc">Calculates the steady-state abundances of the QSE species.</div><div class="ttdef"><b>Definition</b> <a href="solver_8cpp_source.html#l00187">solver.cpp:187</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1solver_1_1_q_s_e_network_solver_html_a35f1f6ede393f15c8bb8862f3f1c3b07"><div class="ttname"><a href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a35f1f6ede393f15c8bb8862f3f1c3b07">gridfire::solver::QSENetworkSolver::shouldUpdateView</a></div><div class="ttdeci">bool shouldUpdateView(const NetIn &conditions) const</div><div class="ttdoc">Determines whether the adaptive engine view should be updated.</div><div class="ttdef"><b>Definition</b> <a href="solver_8cpp_source.html#l00241">solver.cpp:241</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1solver_1_1_q_s_e_network_solver_html_a3c9d46c8f5c519854cd65309a588772f"><div class="ttname"><a href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a3c9d46c8f5c519854cd65309a588772f">gridfire::solver::QSENetworkSolver::m_lastSeenConditions</a></div><div class="ttdeci">NetIn m_lastSeenConditions</div><div class="ttdoc">The last seen input conditions.</div><div class="ttdef"><b>Definition</b> <a href="#l00366">solver.h:366</a></div></div>
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<div class="ttc" id="aclassgridfire_1_1solver_1_1_q_s_e_network_solver_html_a428b49fa7878559665363de06f1a44a7"><div class="ttname"><a href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7">gridfire::solver::QSENetworkSolver::m_logger</a></div><div class="ttdeci">quill::Logger * m_logger</div><div class="ttdoc">Logger instance.</div><div class="ttdef"><b>Definition</b> <a href="#l00362">solver.h:362</a></div></div>
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<div class="ttc" id="aclassgridfire_1_1solver_1_1_q_s_e_network_solver_html_a53b5496db7fed6f345dca39656bf9c0e"><div class="ttname"><a href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a53b5496db7fed6f345dca39656bf9c0e">gridfire::solver::QSENetworkSolver::evaluate</a></div><div class="ttdeci">NetOut evaluate(const NetIn &netIn) override</div><div class="ttdoc">Evaluates the network for a given timestep using the QSE approach.</div><div class="ttdef"><b>Definition</b> <a href="solver_8cpp_source.html#l00023">solver.cpp:23</a></div></div>
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<div class="ttc" id="aclassgridfire_1_1solver_1_1_q_s_e_network_solver_html_a5d81ee5bfcfd5e77fe52201ba9e63719"><div class="ttname"><a href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a5d81ee5bfcfd5e77fe52201ba9e63719">gridfire::solver::QSENetworkSolver::packSpeciesTypeIndexVectors</a></div><div class="ttdeci">dynamicQSESpeciesIndices packSpeciesTypeIndexVectors(const std::vector< double > &Y, const double T9, const double rho) const</div><div class="ttdoc">Packs the species indices into vectors based on their type (dynamic or QSE).</div><div class="ttdef"><b>Definition</b> <a href="solver_8cpp_source.html#l00119">solver.cpp:119</a></div></div>
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<div class="ttc" id="aclassgridfire_1_1solver_1_1_q_s_e_network_solver_html_a7d19b6e50db34d38c81afec76bbedee1"><div class="ttname"><a href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a7d19b6e50db34d38c81afec76bbedee1">gridfire::solver::QSENetworkSolver::m_config</a></div><div class="ttdeci">fourdst::config::Config & m_config</div><div class="ttdoc">Configuration instance.</div><div class="ttdef"><b>Definition</b> <a href="#l00363">solver.h:363</a></div></div>
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<div class="ttc" id="aclassgridfire_1_1solver_1_1_q_s_e_network_solver_html_ab07e68fd418ab058f890502d191b3f18"><div class="ttname"><a href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#ab07e68fd418ab058f890502d191b3f18">gridfire::solver::QSENetworkSolver::m_isViewInitialized</a></div><div class="ttdeci">bool m_isViewInitialized</div><div class="ttdoc">Flag indicating whether the adaptive engine view has been initialized.</div><div class="ttdef"><b>Definition</b> <a href="#l00365">solver.h:365</a></div></div>
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<div class="ttc" id="aclassgridfire_1_1solver_1_1_q_s_e_network_solver_html_abaa567001df0007b714f474febae408b"><div class="ttname"><a href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#abaa567001df0007b714f474febae408b">gridfire::solver::QSENetworkSolver::initializeNetworkWithShortIgnition</a></div><div class="ttdeci">NetOut initializeNetworkWithShortIgnition(const NetIn &netIn) const</div><div class="ttdoc">Initializes the network with a short ignition phase.</div><div class="ttdef"><b>Definition</b> <a href="solver_8cpp_source.html#l00202">solver.cpp:202</a></div></div>
|
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<div class="ttc" id="aclassgridfire_1_1solver_1_1_q_s_e_network_solver_html_a00d112f6087f6e3a93f4d40a519308d2"><div class="ttname"><a href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a00d112f6087f6e3a93f4d40a519308d2">gridfire::solver::QSENetworkSolver::calculateSteadyStateAbundances</a></div><div class="ttdeci">Eigen::VectorXd calculateSteadyStateAbundances(const std::vector< double > &Y, const double T9, const double rho, const dynamicQSESpeciesIndices &indices) const</div><div class="ttdoc">Calculates the steady-state abundances of the QSE species.</div><div class="ttdef"><b>Definition</b> <a href="solver_8cpp_source.html#l00205">solver.cpp:205</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1solver_1_1_q_s_e_network_solver_html_a35f1f6ede393f15c8bb8862f3f1c3b07"><div class="ttname"><a href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a35f1f6ede393f15c8bb8862f3f1c3b07">gridfire::solver::QSENetworkSolver::shouldUpdateView</a></div><div class="ttdeci">bool shouldUpdateView(const NetIn &conditions) const</div><div class="ttdoc">Determines whether the adaptive engine view should be updated.</div><div class="ttdef"><b>Definition</b> <a href="solver_8cpp_source.html#l00308">solver.cpp:308</a></div></div>
|
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<div class="ttc" id="aclassgridfire_1_1solver_1_1_q_s_e_network_solver_html_a3c9d46c8f5c519854cd65309a588772f"><div class="ttname"><a href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a3c9d46c8f5c519854cd65309a588772f">gridfire::solver::QSENetworkSolver::m_lastSeenConditions</a></div><div class="ttdeci">NetIn m_lastSeenConditions</div><div class="ttdoc">The last seen input conditions.</div><div class="ttdef"><b>Definition</b> <a href="#l00373">solver.h:373</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1solver_1_1_q_s_e_network_solver_html_a428b49fa7878559665363de06f1a44a7"><div class="ttname"><a href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7">gridfire::solver::QSENetworkSolver::m_logger</a></div><div class="ttdeci">quill::Logger * m_logger</div><div class="ttdoc">Logger instance.</div><div class="ttdef"><b>Definition</b> <a href="#l00369">solver.h:369</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1solver_1_1_q_s_e_network_solver_html_a53b5496db7fed6f345dca39656bf9c0e"><div class="ttname"><a href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a53b5496db7fed6f345dca39656bf9c0e">gridfire::solver::QSENetworkSolver::evaluate</a></div><div class="ttdeci">NetOut evaluate(const NetIn &netIn) override</div><div class="ttdoc">Evaluates the network for a given timestep using the QSE approach.</div><div class="ttdef"><b>Definition</b> <a href="solver_8cpp_source.html#l00026">solver.cpp:26</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1solver_1_1_q_s_e_network_solver_html_a5d81ee5bfcfd5e77fe52201ba9e63719"><div class="ttname"><a href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a5d81ee5bfcfd5e77fe52201ba9e63719">gridfire::solver::QSENetworkSolver::packSpeciesTypeIndexVectors</a></div><div class="ttdeci">dynamicQSESpeciesIndices packSpeciesTypeIndexVectors(const std::vector< double > &Y, const double T9, const double rho) const</div><div class="ttdoc">Packs the species indices into vectors based on their type (dynamic or QSE).</div><div class="ttdef"><b>Definition</b> <a href="solver_8cpp_source.html#l00137">solver.cpp:137</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1solver_1_1_q_s_e_network_solver_html_a7d19b6e50db34d38c81afec76bbedee1"><div class="ttname"><a href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a7d19b6e50db34d38c81afec76bbedee1">gridfire::solver::QSENetworkSolver::m_config</a></div><div class="ttdeci">fourdst::config::Config & m_config</div><div class="ttdoc">Configuration instance.</div><div class="ttdef"><b>Definition</b> <a href="#l00370">solver.h:370</a></div></div>
|
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<div class="ttc" id="aclassgridfire_1_1solver_1_1_q_s_e_network_solver_html_ab07e68fd418ab058f890502d191b3f18"><div class="ttname"><a href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#ab07e68fd418ab058f890502d191b3f18">gridfire::solver::QSENetworkSolver::m_isViewInitialized</a></div><div class="ttdeci">bool m_isViewInitialized</div><div class="ttdoc">Flag indicating whether the adaptive engine view has been initialized.</div><div class="ttdef"><b>Definition</b> <a href="#l00372">solver.h:372</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1solver_1_1_q_s_e_network_solver_html_abaa567001df0007b714f474febae408b"><div class="ttname"><a href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#abaa567001df0007b714f474febae408b">gridfire::solver::QSENetworkSolver::initializeNetworkWithShortIgnition</a></div><div class="ttdeci">NetOut initializeNetworkWithShortIgnition(const NetIn &netIn) const</div><div class="ttdoc">Initializes the network with a short ignition phase.</div><div class="ttdef"><b>Definition</b> <a href="solver_8cpp_source.html#l00264">solver.cpp:264</a></div></div>
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<div class="ttc" id="aengine__abstract_8h_html"><div class="ttname"><a href="engine__abstract_8h.html">engine_abstract.h</a></div><div class="ttdoc">Abstract interfaces for reaction network engines in GridFire.</div></div>
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<div class="ttc" id="aengine__adaptive_8h_html"><div class="ttname"><a href="engine__adaptive_8h.html">engine_adaptive.h</a></div></div>
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<div class="ttc" id="aengine__graph_8h_html"><div class="ttname"><a href="engine__graph_8h.html">engine_graph.h</a></div></div>
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@@ -440,30 +444,35 @@ $(function(){initNavTree('solver_8h_source.html',''); initResizable(true); });
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<div class="ttc" id="anetwork_8h_html"><div class="ttname"><a href="network_8h.html">network.h</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1_net_in_html"><div class="ttname"><a href="structgridfire_1_1_net_in.html">gridfire::NetIn</a></div><div class="ttdef"><b>Definition</b> <a href="network_8h_source.html#l00053">network.h:53</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1_net_out_html"><div class="ttname"><a href="structgridfire_1_1_net_out.html">gridfire::NetOut</a></div><div class="ttdef"><b>Definition</b> <a href="network_8h_source.html#l00065">network.h:65</a></div></div>
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||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor_html_a3f624142212b5e6ff65f5706953fe353"><div class="ttname"><a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a3f624142212b5e6ff65f5706953fe353">gridfire::solver::DirectNetworkSolver::JacobianFunctor::m_numSpecies</a></div><div class="ttdeci">const size_t m_numSpecies</div><div class="ttdoc">The number of species in the network.</div><div class="ttdef"><b>Definition</b> <a href="#l00448">solver.h:448</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor_html_a56f8b2b222fb2a7dac190ead0babfdd0"><div class="ttname"><a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a56f8b2b222fb2a7dac190ead0babfdd0">gridfire::solver::DirectNetworkSolver::JacobianFunctor::m_engine</a></div><div class="ttdeci">DynamicEngine & m_engine</div><div class="ttdoc">The engine used to evaluate the network.</div><div class="ttdef"><b>Definition</b> <a href="#l00445">solver.h:445</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor_html_a88f5fc48a555b369f1e2688d6bb67b83"><div class="ttname"><a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a88f5fc48a555b369f1e2688d6bb67b83">gridfire::solver::DirectNetworkSolver::JacobianFunctor::m_T9</a></div><div class="ttdeci">const double m_T9</div><div class="ttdoc">Temperature in units of 10^9 K.</div><div class="ttdef"><b>Definition</b> <a href="#l00446">solver.h:446</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor_html_a932c41aa9f1aa38e56a03b27cd2ccda4"><div class="ttname"><a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a932c41aa9f1aa38e56a03b27cd2ccda4">gridfire::solver::DirectNetworkSolver::JacobianFunctor::m_rho</a></div><div class="ttdeci">const double m_rho</div><div class="ttdoc">Density in g/cm^3.</div><div class="ttdef"><b>Definition</b> <a href="#l00447">solver.h:447</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor_html_ad4fc0b406218aa2f567f5c61a4eda3c9"><div class="ttname"><a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#ad4fc0b406218aa2f567f5c61a4eda3c9">gridfire::solver::DirectNetworkSolver::JacobianFunctor::operator()</a></div><div class="ttdeci">void operator()(const boost::numeric::ublas::vector< double > &Y, boost::numeric::ublas::matrix< double > &J, double t, boost::numeric::ublas::vector< double > &dfdt) const</div><div class="ttdoc">Calculates the Jacobian matrix.</div><div class="ttdef"><b>Definition</b> <a href="solver_8cpp_source.html#l00386">solver.cpp:386</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor_html_afd2a548ffb907b0fb1fa28993ea99f25"><div class="ttname"><a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#afd2a548ffb907b0fb1fa28993ea99f25">gridfire::solver::DirectNetworkSolver::JacobianFunctor::JacobianFunctor</a></div><div class="ttdeci">JacobianFunctor(DynamicEngine &engine, const double T9, const double rho)</div><div class="ttdoc">Constructor for the JacobianFunctor.</div><div class="ttdef"><b>Definition</b> <a href="#l00456">solver.h:456</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor_html_a04f8c84e46e6fbd0977e50fda4829d1a"><div class="ttname"><a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a04f8c84e46e6fbd0977e50fda4829d1a">gridfire::solver::DirectNetworkSolver::RHSFunctor::m_engine</a></div><div class="ttdeci">DynamicEngine & m_engine</div><div class="ttdoc">The engine used to evaluate the network.</div><div class="ttdef"><b>Definition</b> <a href="#l00403">solver.h:403</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor_html_a082844f1eae0609e66620575210e8823"><div class="ttname"><a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a082844f1eae0609e66620575210e8823">gridfire::solver::DirectNetworkSolver::RHSFunctor::m_T9</a></div><div class="ttdeci">const double m_T9</div><div class="ttdoc">Temperature in units of 10^9 K.</div><div class="ttdef"><b>Definition</b> <a href="#l00404">solver.h:404</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor_html_a3a7542b6c6b4c86b6fe53f54d7232919"><div class="ttname"><a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a3a7542b6c6b4c86b6fe53f54d7232919">gridfire::solver::DirectNetworkSolver::RHSFunctor::operator()</a></div><div class="ttdeci">void operator()(const boost::numeric::ublas::vector< double > &Y, boost::numeric::ublas::vector< double > &dYdt, double t) const</div><div class="ttdoc">Calculates the time derivatives of the species abundances.</div><div class="ttdef"><b>Definition</b> <a href="solver_8cpp_source.html#l00374">solver.cpp:374</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor_html_a7d4f7f04c4ee6f0b519194f87aa265e7"><div class="ttname"><a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a7d4f7f04c4ee6f0b519194f87aa265e7">gridfire::solver::DirectNetworkSolver::RHSFunctor::m_rho</a></div><div class="ttdeci">const double m_rho</div><div class="ttdoc">Density in g/cm^3.</div><div class="ttdef"><b>Definition</b> <a href="#l00405">solver.h:405</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor_html_ac4a1af03d2a4fbc5cc2407b8a6833147"><div class="ttname"><a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#ac4a1af03d2a4fbc5cc2407b8a6833147">gridfire::solver::DirectNetworkSolver::RHSFunctor::m_numSpecies</a></div><div class="ttdeci">const size_t m_numSpecies</div><div class="ttdoc">The number of species in the network.</div><div class="ttdef"><b>Definition</b> <a href="#l00406">solver.h:406</a></div></div>
|
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<div class="ttc" id="astructgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor_html_aed201b52ea757069c17a49e9638b3d3c"><div class="ttname"><a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#aed201b52ea757069c17a49e9638b3d3c">gridfire::solver::DirectNetworkSolver::RHSFunctor::RHSFunctor</a></div><div class="ttdeci">RHSFunctor(DynamicEngine &engine, const double T9, const double rho)</div><div class="ttdoc">Constructor for the RHSFunctor.</div><div class="ttdef"><b>Definition</b> <a href="#l00414">solver.h:414</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor_html_a08ce53701b152f3ce108c1c18ce64de2"><div class="ttname"><a href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a08ce53701b152f3ce108c1c18ce64de2">gridfire::solver::QSENetworkSolver::EigenFunctor::m_dynamicSpeciesIndices</a></div><div class="ttdeci">const std::vector< size_t > & m_dynamicSpeciesIndices</div><div class="ttdoc">Indices of the dynamic species.</div><div class="ttdef"><b>Definition</b> <a href="#l00316">solver.h:316</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor_html_a6771ae56ddd9058954b42ee92a378309"><div class="ttname"><a href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a6771ae56ddd9058954b42ee92a378309">gridfire::solver::QSENetworkSolver::EigenFunctor::m_T9</a></div><div class="ttdeci">const double m_T9</div><div class="ttdoc">Temperature in units of 10^9 K.</div><div class="ttdef"><b>Definition</b> <a href="#l00318">solver.h:318</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor_html_a91c9c7c40c061dcfb6e57524e696676e"><div class="ttname"><a href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a91c9c7c40c061dcfb6e57524e696676e">gridfire::solver::QSENetworkSolver::EigenFunctor::operator()</a></div><div class="ttdeci">int operator()(const InputType &v_QSE, OutputType &f_QSE) const</div><div class="ttdoc">Calculates the residual vector for the QSE species.</div><div class="ttdef"><b>Definition</b> <a href="#l00488">solver.h:488</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor_html_a93b46ca95ddf9e4d21d02700621e6285"><div class="ttname"><a href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a93b46ca95ddf9e4d21d02700621e6285">gridfire::solver::QSENetworkSolver::EigenFunctor::m_engine</a></div><div class="ttdeci">DynamicEngine & m_engine</div><div class="ttdoc">The engine used to evaluate the network.</div><div class="ttdef"><b>Definition</b> <a href="#l00314">solver.h:314</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor_html_ab0a0d4c166e97b971543cbbf2b0a1a2e"><div class="ttname"><a href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#ab0a0d4c166e97b971543cbbf2b0a1a2e">gridfire::solver::QSENetworkSolver::EigenFunctor::m_rho</a></div><div class="ttdeci">const double m_rho</div><div class="ttdoc">Density in g/cm^3.</div><div class="ttdef"><b>Definition</b> <a href="#l00319">solver.h:319</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor_html_abaf28fdd93e881ef56c24f541be7492d"><div class="ttname"><a href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#abaf28fdd93e881ef56c24f541be7492d">gridfire::solver::QSENetworkSolver::EigenFunctor::m_QSESpeciesIndices</a></div><div class="ttdeci">const std::vector< size_t > & m_QSESpeciesIndices</div><div class="ttdoc">Indices of the QSE species.</div><div class="ttdef"><b>Definition</b> <a href="#l00317">solver.h:317</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor_html_a3f624142212b5e6ff65f5706953fe353"><div class="ttname"><a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a3f624142212b5e6ff65f5706953fe353">gridfire::solver::DirectNetworkSolver::JacobianFunctor::m_numSpecies</a></div><div class="ttdeci">const size_t m_numSpecies</div><div class="ttdoc">The number of species in the network.</div><div class="ttdef"><b>Definition</b> <a href="#l00456">solver.h:456</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor_html_a56f8b2b222fb2a7dac190ead0babfdd0"><div class="ttname"><a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a56f8b2b222fb2a7dac190ead0babfdd0">gridfire::solver::DirectNetworkSolver::JacobianFunctor::m_engine</a></div><div class="ttdeci">DynamicEngine & m_engine</div><div class="ttdoc">The engine used to evaluate the network.</div><div class="ttdef"><b>Definition</b> <a href="#l00453">solver.h:453</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor_html_a88f5fc48a555b369f1e2688d6bb67b83"><div class="ttname"><a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a88f5fc48a555b369f1e2688d6bb67b83">gridfire::solver::DirectNetworkSolver::JacobianFunctor::m_T9</a></div><div class="ttdeci">const double m_T9</div><div class="ttdoc">Temperature in units of 10^9 K.</div><div class="ttdef"><b>Definition</b> <a href="#l00454">solver.h:454</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor_html_a932c41aa9f1aa38e56a03b27cd2ccda4"><div class="ttname"><a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a932c41aa9f1aa38e56a03b27cd2ccda4">gridfire::solver::DirectNetworkSolver::JacobianFunctor::m_rho</a></div><div class="ttdeci">const double m_rho</div><div class="ttdoc">Density in g/cm^3.</div><div class="ttdef"><b>Definition</b> <a href="#l00455">solver.h:455</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor_html_ad4fc0b406218aa2f567f5c61a4eda3c9"><div class="ttname"><a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#ad4fc0b406218aa2f567f5c61a4eda3c9">gridfire::solver::DirectNetworkSolver::JacobianFunctor::operator()</a></div><div class="ttdeci">void operator()(const boost::numeric::ublas::vector< double > &Y, boost::numeric::ublas::matrix< double > &J, double t, boost::numeric::ublas::vector< double > &dfdt) const</div><div class="ttdoc">Calculates the Jacobian matrix.</div><div class="ttdef"><b>Definition</b> <a href="solver_8cpp_source.html#l00463">solver.cpp:463</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor_html_afd2a548ffb907b0fb1fa28993ea99f25"><div class="ttname"><a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#afd2a548ffb907b0fb1fa28993ea99f25">gridfire::solver::DirectNetworkSolver::JacobianFunctor::JacobianFunctor</a></div><div class="ttdeci">JacobianFunctor(DynamicEngine &engine, const double T9, const double rho)</div><div class="ttdoc">Constructor for the JacobianFunctor.</div><div class="ttdef"><b>Definition</b> <a href="#l00464">solver.h:464</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor_html_a04f8c84e46e6fbd0977e50fda4829d1a"><div class="ttname"><a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a04f8c84e46e6fbd0977e50fda4829d1a">gridfire::solver::DirectNetworkSolver::RHSFunctor::m_engine</a></div><div class="ttdeci">DynamicEngine & m_engine</div><div class="ttdoc">The engine used to evaluate the network.</div><div class="ttdef"><b>Definition</b> <a href="#l00410">solver.h:410</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor_html_a082844f1eae0609e66620575210e8823"><div class="ttname"><a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a082844f1eae0609e66620575210e8823">gridfire::solver::DirectNetworkSolver::RHSFunctor::m_T9</a></div><div class="ttdeci">const double m_T9</div><div class="ttdoc">Temperature in units of 10^9 K.</div><div class="ttdef"><b>Definition</b> <a href="#l00411">solver.h:411</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor_html_a3a7542b6c6b4c86b6fe53f54d7232919"><div class="ttname"><a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a3a7542b6c6b4c86b6fe53f54d7232919">gridfire::solver::DirectNetworkSolver::RHSFunctor::operator()</a></div><div class="ttdeci">void operator()(const boost::numeric::ublas::vector< double > &Y, boost::numeric::ublas::vector< double > &dYdt, double t) const</div><div class="ttdoc">Calculates the time derivatives of the species abundances.</div><div class="ttdef"><b>Definition</b> <a href="solver_8cpp_source.html#l00442">solver.cpp:442</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor_html_a7d4f7f04c4ee6f0b519194f87aa265e7"><div class="ttname"><a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a7d4f7f04c4ee6f0b519194f87aa265e7">gridfire::solver::DirectNetworkSolver::RHSFunctor::m_rho</a></div><div class="ttdeci">const double m_rho</div><div class="ttdoc">Density in g/cm^3.</div><div class="ttdef"><b>Definition</b> <a href="#l00412">solver.h:412</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor_html_a9cf3e5b5206b5cd8650cbf620ca5007b"><div class="ttname"><a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a9cf3e5b5206b5cd8650cbf620ca5007b">gridfire::solver::DirectNetworkSolver::RHSFunctor::m_logger</a></div><div class="ttdeci">quill::Logger * m_logger</div><div class="ttdoc">Logger instance.</div><div class="ttdef"><b>Definition</b> <a href="#l00414">solver.h:414</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor_html_ac4a1af03d2a4fbc5cc2407b8a6833147"><div class="ttname"><a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#ac4a1af03d2a4fbc5cc2407b8a6833147">gridfire::solver::DirectNetworkSolver::RHSFunctor::m_numSpecies</a></div><div class="ttdeci">const size_t m_numSpecies</div><div class="ttdoc">The number of species in the network.</div><div class="ttdef"><b>Definition</b> <a href="#l00413">solver.h:413</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor_html_aed201b52ea757069c17a49e9638b3d3c"><div class="ttname"><a href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#aed201b52ea757069c17a49e9638b3d3c">gridfire::solver::DirectNetworkSolver::RHSFunctor::RHSFunctor</a></div><div class="ttdeci">RHSFunctor(DynamicEngine &engine, const double T9, const double rho)</div><div class="ttdoc">Constructor for the RHSFunctor.</div><div class="ttdef"><b>Definition</b> <a href="#l00422">solver.h:422</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor_html_a08ce53701b152f3ce108c1c18ce64de2"><div class="ttname"><a href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a08ce53701b152f3ce108c1c18ce64de2">gridfire::solver::QSENetworkSolver::EigenFunctor::m_dynamicSpeciesIndices</a></div><div class="ttdeci">const std::vector< size_t > & m_dynamicSpeciesIndices</div><div class="ttdoc">Indices of the dynamic species.</div><div class="ttdef"><b>Definition</b> <a href="#l00320">solver.h:320</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor_html_a16dc10cb9c1392920f8d0ba95e0bc86e"><div class="ttname"><a href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a16dc10cb9c1392920f8d0ba95e0bc86e">gridfire::solver::QSENetworkSolver::EigenFunctor::operator()</a></div><div class="ttdeci">int operator()(const InputType &v_QSE_log, OutputType &f_QSE) const</div><div class="ttdoc">Calculates the residual vector for the QSE species.</div><div class="ttdef"><b>Definition</b> <a href="#l00496">solver.h:496</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor_html_a1bff36d14c3e1f7a276d9fe6b564abdfab349cc75d98609f22769f5ce87050dac"><div class="ttname"><a href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a1bff36d14c3e1f7a276d9fe6b564abdfab349cc75d98609f22769f5ce87050dac">gridfire::solver::QSENetworkSolver::EigenFunctor::InputsAtCompileTime</a></div><div class="ttdeci">@ InputsAtCompileTime</div><div class="ttdef"><b>Definition</b> <a href="#l00314">solver.h:314</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor_html_a1bff36d14c3e1f7a276d9fe6b564abdfac9e03a0ebbba30da72c7591639a69a09"><div class="ttname"><a href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a1bff36d14c3e1f7a276d9fe6b564abdfac9e03a0ebbba30da72c7591639a69a09">gridfire::solver::QSENetworkSolver::EigenFunctor::ValuesAtCompileTime</a></div><div class="ttdeci">@ ValuesAtCompileTime</div><div class="ttdef"><b>Definition</b> <a href="#l00315">solver.h:315</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor_html_a2dca32a9e0bea5aea2a565f94b99a8de"><div class="ttname"><a href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a2dca32a9e0bea5aea2a565f94b99a8de">gridfire::solver::QSENetworkSolver::EigenFunctor::m_YFull</a></div><div class="ttdeci">const std::vector< double > & m_YFull</div><div class="ttdoc">The full, initial abundance vector.</div><div class="ttdef"><b>Definition</b> <a href="#l00319">solver.h:319</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor_html_a51687d7a9770164f79e485a763bd94b0"><div class="ttname"><a href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a51687d7a9770164f79e485a763bd94b0">gridfire::solver::QSENetworkSolver::EigenFunctor::df</a></div><div class="ttdeci">int df(const InputType &v_QSE_log, JacobianType &J_QSE) const</div><div class="ttdoc">Calculates the Jacobian matrix for the QSE species.</div><div class="ttdef"><b>Definition</b> <a href="#l00514">solver.h:514</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor_html_a5ce08aab2f1976c9258dad2b67e1c5b6"><div class="ttname"><a href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a5ce08aab2f1976c9258dad2b67e1c5b6">gridfire::solver::QSENetworkSolver::EigenFunctor::inputs</a></div><div class="ttdeci">int inputs() const</div><div class="ttdef"><b>Definition</b> <a href="#l00350">solver.h:350</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor_html_a6771ae56ddd9058954b42ee92a378309"><div class="ttname"><a href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a6771ae56ddd9058954b42ee92a378309">gridfire::solver::QSENetworkSolver::EigenFunctor::m_T9</a></div><div class="ttdeci">const double m_T9</div><div class="ttdoc">Temperature in units of 10^9 K.</div><div class="ttdef"><b>Definition</b> <a href="#l00322">solver.h:322</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor_html_a93b46ca95ddf9e4d21d02700621e6285"><div class="ttname"><a href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a93b46ca95ddf9e4d21d02700621e6285">gridfire::solver::QSENetworkSolver::EigenFunctor::m_engine</a></div><div class="ttdeci">DynamicEngine & m_engine</div><div class="ttdoc">The engine used to evaluate the network.</div><div class="ttdef"><b>Definition</b> <a href="#l00318">solver.h:318</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor_html_a94a1e5994062c32bd45c248860be6fa4"><div class="ttname"><a href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a94a1e5994062c32bd45c248860be6fa4">gridfire::solver::QSENetworkSolver::EigenFunctor::EigenFunctor</a></div><div class="ttdeci">EigenFunctor(DynamicEngine &engine, const std::vector< double > &YFull, const std::vector< size_t > &dynamicSpeciesIndices, const std::vector< size_t > &QSESpeciesIndices, const double T9, const double rho)</div><div class="ttdoc">Constructor for the EigenFunctor.</div><div class="ttdef"><b>Definition</b> <a href="#l00334">solver.h:334</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor_html_aa9730f06a604c3c95ccc33ab6f0f8878"><div class="ttname"><a href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#aa9730f06a604c3c95ccc33ab6f0f8878">gridfire::solver::QSENetworkSolver::EigenFunctor::values</a></div><div class="ttdeci">int values() const</div><div class="ttdef"><b>Definition</b> <a href="#l00349">solver.h:349</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor_html_ab0a0d4c166e97b971543cbbf2b0a1a2e"><div class="ttname"><a href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#ab0a0d4c166e97b971543cbbf2b0a1a2e">gridfire::solver::QSENetworkSolver::EigenFunctor::m_rho</a></div><div class="ttdeci">const double m_rho</div><div class="ttdoc">Density in g/cm^3.</div><div class="ttdef"><b>Definition</b> <a href="#l00323">solver.h:323</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor_html_abaf28fdd93e881ef56c24f541be7492d"><div class="ttname"><a href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#abaf28fdd93e881ef56c24f541be7492d">gridfire::solver::QSENetworkSolver::EigenFunctor::m_QSESpeciesIndices</a></div><div class="ttdeci">const std::vector< size_t > & m_QSESpeciesIndices</div><div class="ttdoc">Indices of the QSE species.</div><div class="ttdef"><b>Definition</b> <a href="#l00321">solver.h:321</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor_html_abc86b32db81acf1b24feb3763dc4ddb0"><div class="ttname"><a href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#abc86b32db81acf1b24feb3763dc4ddb0">gridfire::solver::QSENetworkSolver::EigenFunctor::OutputType</a></div><div class="ttdeci">Eigen::Matrix< T, Eigen::Dynamic, 1 > OutputType</div><div class="ttdef"><b>Definition</b> <a href="#l00311">solver.h:311</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor_html_ac46bd712296b03f31af1573f6a0f5644"><div class="ttname"><a href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#ac46bd712296b03f31af1573f6a0f5644">gridfire::solver::QSENetworkSolver::EigenFunctor::df</a></div><div class="ttdeci">int df(const InputType &v_QSE, JacobianType &J_QSE) const</div><div class="ttdoc">Calculates the Jacobian matrix for the QSE species.</div><div class="ttdef"><b>Definition</b> <a href="#l00507">solver.h:507</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor_html_ac4ec3c180a9778acdd604a9b80d25399"><div class="ttname"><a href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#ac4ec3c180a9778acdd604a9b80d25399">gridfire::solver::QSENetworkSolver::EigenFunctor::InputType</a></div><div class="ttdeci">Eigen::Matrix< T, Eigen::Dynamic, 1 > InputType</div><div class="ttdef"><b>Definition</b> <a href="#l00310">solver.h:310</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor_html_ad42fdb6d5ae06eaa6ddccf03eba0a50c"><div class="ttname"><a href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#ad42fdb6d5ae06eaa6ddccf03eba0a50c">gridfire::solver::QSENetworkSolver::EigenFunctor::JacobianType</a></div><div class="ttdeci">Eigen::Matrix< T, Eigen::Dynamic, Eigen::Dynamic > JacobianType</div><div class="ttdef"><b>Definition</b> <a href="#l00312">solver.h:312</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor_html_af4f10300bde1e8e07b896bfca6335401"><div class="ttname"><a href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#af4f10300bde1e8e07b896bfca6335401">gridfire::solver::QSENetworkSolver::EigenFunctor::m_YDynamic</a></div><div class="ttdeci">const std::vector< double > & m_YDynamic</div><div class="ttdoc">Abundances of the dynamic species.</div><div class="ttdef"><b>Definition</b> <a href="#l00315">solver.h:315</a></div></div>
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<div class="ttc" id="astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor_html_af8650f704c2ca512c9c5b4562b3b0958"><div class="ttname"><a href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#af8650f704c2ca512c9c5b4562b3b0958">gridfire::solver::QSENetworkSolver::EigenFunctor::EigenFunctor</a></div><div class="ttdeci">EigenFunctor(DynamicEngine &engine, const std::vector< double > &YDynamic, const std::vector< size_t > &dynamicSpeciesIndices, const std::vector< size_t > &QSESpeciesIndices, const double T9, const double rho)</div><div class="ttdoc">Constructor for the EigenFunctor.</div><div class="ttdef"><b>Definition</b> <a href="#l00330">solver.h:330</a></div></div>
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<div class="ttc" id="astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_jacobian_functor_html_a0907f7b6c1a87baf5e39fbc17a30df82"><div class="ttname"><a href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_jacobian_functor.html#a0907f7b6c1a87baf5e39fbc17a30df82">gridfire::solver::QSENetworkSolver::JacobianFunctor::m_rho</a></div><div class="ttdeci">const double m_rho</div><div class="ttdoc">Density in g/cm^3.</div><div class="ttdef"><b>Definition</b> <a href="#l00264">solver.h:264</a></div></div>
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<div class="ttc" id="astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_jacobian_functor_html_a1b92391170eb46771bd499aa8d115334"><div class="ttname"><a href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_jacobian_functor.html#a1b92391170eb46771bd499aa8d115334">gridfire::solver::QSENetworkSolver::JacobianFunctor::m_QSESpeciesIndices</a></div><div class="ttdeci">const std::vector< size_t > & m_QSESpeciesIndices</div><div class="ttdoc">Indices of the QSE species.</div><div class="ttdef"><b>Definition</b> <a href="#l00262">solver.h:262</a></div></div>
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<div class="ttc" id="astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_jacobian_functor_html_a2071ce797f94ae1a3ea6d934748672ce"><div class="ttname"><a href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_jacobian_functor.html#a2071ce797f94ae1a3ea6d934748672ce">gridfire::solver::QSENetworkSolver::JacobianFunctor::m_dynamicSpeciesIndices</a></div><div class="ttdeci">const std::vector< size_t > & m_dynamicSpeciesIndices</div><div class="ttdoc">Indices of the dynamic species.</div><div class="ttdef"><b>Definition</b> <a href="#l00261">solver.h:261</a></div></div>
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@@ -479,7 +488,7 @@ $(function(){initNavTree('solver_8h_source.html',''); initResizable(true); });
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<div class="ttc" id="astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor_html_a6be7259897a47ce480b289144b06e269"><div class="ttname"><a href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#a6be7259897a47ce480b289144b06e269">gridfire::solver::QSENetworkSolver::RHSFunctor::m_QSESpeciesIndices</a></div><div class="ttdeci">const std::vector< size_t > & m_QSESpeciesIndices</div><div class="ttdoc">Indices of the QSE species.</div><div class="ttdef"><b>Definition</b> <a href="#l00204">solver.h:204</a></div></div>
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<div class="ttc" id="astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor_html_a81f964b87457847d7de13fed18499283"><div class="ttname"><a href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#a81f964b87457847d7de13fed18499283">gridfire::solver::QSENetworkSolver::RHSFunctor::m_isViewInitialized</a></div><div class="ttdeci">bool m_isViewInitialized</div><div class="ttdef"><b>Definition</b> <a href="#l00209">solver.h:209</a></div></div>
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<div class="ttc" id="astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor_html_adc0f8e655af42f414dcb220a7224f261"><div class="ttname"><a href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#adc0f8e655af42f414dcb220a7224f261">gridfire::solver::QSENetworkSolver::RHSFunctor::m_rho</a></div><div class="ttdeci">const double m_rho</div><div class="ttdoc">Density in g/cm^3.</div><div class="ttdef"><b>Definition</b> <a href="#l00207">solver.h:207</a></div></div>
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<div class="ttc" id="astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor_html_ae0b6362d9c0a14e69c7a47233db6a86a"><div class="ttname"><a href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#ae0b6362d9c0a14e69c7a47233db6a86a">gridfire::solver::QSENetworkSolver::RHSFunctor::operator()</a></div><div class="ttdeci">void operator()(const boost::numeric::ublas::vector< double > &YDynamic, boost::numeric::ublas::vector< double > &dYdtDynamic, double t) const</div><div class="ttdoc">Calculates the time derivatives of the dynamic species.</div><div class="ttdef"><b>Definition</b> <a href="solver_8cpp_source.html#l00283">solver.cpp:283</a></div></div>
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<div class="ttc" id="astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor_html_ae0b6362d9c0a14e69c7a47233db6a86a"><div class="ttname"><a href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#ae0b6362d9c0a14e69c7a47233db6a86a">gridfire::solver::QSENetworkSolver::RHSFunctor::operator()</a></div><div class="ttdeci">void operator()(const boost::numeric::ublas::vector< double > &YDynamic, boost::numeric::ublas::vector< double > &dYdtDynamic, double t) const</div><div class="ttdoc">Calculates the time derivatives of the dynamic species.</div><div class="ttdef"><b>Definition</b> <a href="solver_8cpp_source.html#l00350">solver.cpp:350</a></div></div>
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<div class="ttc" id="astructgridfire_1_1solver_1_1dynamic_q_s_e_species_indices_html"><div class="ttname"><a href="structgridfire_1_1solver_1_1dynamic_q_s_e_species_indices.html">gridfire::solver::dynamicQSESpeciesIndices</a></div><div class="ttdoc">Structure to hold indices of dynamic and QSE species.</div><div class="ttdef"><b>Definition</b> <a href="#l00027">solver.h:27</a></div></div>
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<div class="ttc" id="astructgridfire_1_1solver_1_1dynamic_q_s_e_species_indices_html_a7d4ba82d9e60a4914938ebebecaab4a2"><div class="ttname"><a href="structgridfire_1_1solver_1_1dynamic_q_s_e_species_indices.html#a7d4ba82d9e60a4914938ebebecaab4a2">gridfire::solver::dynamicQSESpeciesIndices::QSESpeciesIndices</a></div><div class="ttdeci">std::vector< size_t > QSESpeciesIndices</div><div class="ttdoc">Indices of fast species that are in QSE.</div><div class="ttdef"><b>Definition</b> <a href="#l00029">solver.h:29</a></div></div>
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<div class="ttc" id="astructgridfire_1_1solver_1_1dynamic_q_s_e_species_indices_html_ac6e0419abdd3c78b32e34c16c0543157"><div class="ttname"><a href="structgridfire_1_1solver_1_1dynamic_q_s_e_species_indices.html#ac6e0419abdd3c78b32e34c16c0543157">gridfire::solver::dynamicQSESpeciesIndices::dynamicSpeciesIndices</a></div><div class="ttdeci">std::vector< size_t > dynamicSpeciesIndices</div><div class="ttdoc">Indices of slow species that are not in QSE.</div><div class="ttdef"><b>Definition</b> <a href="#l00028">solver.h:28</a></div></div>
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