From c167357a3bc3463b24a27817e563859897c4b94c Mon Sep 17 00:00:00 2001
From: Emily Boudreaux <thomas@boudreauxmail.com>
Date: Wed, 30 Apr 2025 11:39:36 -0400
Subject: [PATCH 1/3] feat(pybind11): added infra to compile with pybind11

---
 build-config/pybind/meson.build |  0
 subprojects/pybind11.wrap       | 13 +++++++++++++
 2 files changed, 13 insertions(+)
 create mode 100644 build-config/pybind/meson.build
 create mode 100644 subprojects/pybind11.wrap

diff --git a/build-config/pybind/meson.build b/build-config/pybind/meson.build
new file mode 100644
index 00000000..e69de29b
diff --git a/subprojects/pybind11.wrap b/subprojects/pybind11.wrap
new file mode 100644
index 00000000..b4024bbf
--- /dev/null
+++ b/subprojects/pybind11.wrap
@@ -0,0 +1,13 @@
+[wrap-file]
+directory = pybind11-2.13.5
+source_url = https://github.com/pybind/pybind11/archive/refs/tags/v2.13.5.tar.gz
+source_filename = pybind11-2.13.5.tar.gz
+source_hash = b1e209c42b3a9ed74da3e0b25a4f4cd478d89d5efbb48f04b277df427faf6252
+patch_filename = pybind11_2.13.5-1_patch.zip
+patch_url = https://wrapdb.mesonbuild.com/v2/pybind11_2.13.5-1/get_patch
+patch_hash = ecb031b830481560b3d8487ed63ba4f5509a074be42f5d19af64d844c795e15b
+source_fallback_url = https://github.com/mesonbuild/wrapdb/releases/download/pybind11_2.13.5-1/pybind11-2.13.5.tar.gz
+wrapdb_version = 2.13.5-1
+
+[provide]
+pybind11 = pybind11_dep

From 394622df4752dad7453a7286e3ccaffa60e8bdc6 Mon Sep 17 00:00:00 2001
From: Emily Boudreaux <thomas@boudreauxmail.com>
Date: Wed, 30 Apr 2025 11:41:10 -0400
Subject: [PATCH 2/3] feat(python-composition): added composition module
 interface

---
 assets/static/atomic/include/atomicSpecies.h |  4 +---
 build-config/pybind/meson.build              |  5 +++++
 build-config/quill/meson.build               | 11 ++++++++---
 3 files changed, 14 insertions(+), 6 deletions(-)

diff --git a/assets/static/atomic/include/atomicSpecies.h b/assets/static/atomic/include/atomicSpecies.h
index 64c6596a..be265b39 100644
--- a/assets/static/atomic/include/atomicSpecies.h
+++ b/assets/static/atomic/include/atomicSpecies.h
@@ -1,5 +1,4 @@
-#ifndef SPECIES_MASS_DATA_H
-#define SPECIES_MASS_DATA_H
+#pragma once
 #include <unordered_map>
 #include <string_view>
 #include <string>
@@ -7205,4 +7204,3 @@ namespace chemSpecies {
         {"Og-295", Og_295},
     };
 }; // namespace chemSpecies
-#endif // SPECIES_MASS_DATA_H
diff --git a/build-config/pybind/meson.build b/build-config/pybind/meson.build
index e69de29b..94888e18 100644
--- a/build-config/pybind/meson.build
+++ b/build-config/pybind/meson.build
@@ -0,0 +1,5 @@
+if get_option('build_python')
+    pybind11_proj = subproject('pybind11')
+    pybind11_dep = pybind11_proj.get_variable('pybind11_dep')
+    python3_dep = dependency('python3')
+endif
\ No newline at end of file
diff --git a/build-config/quill/meson.build b/build-config/quill/meson.build
index 3c5a89d8..a069255e 100644
--- a/build-config/quill/meson.build
+++ b/build-config/quill/meson.build
@@ -1,5 +1,10 @@
+quill_cmake_options = cmake.subproject_options()
+quill_cmake_options.add_cmake_defines({
+                                     'BUILD_SHARED_LIBS': 'ON',
+                                     'CMAKE_SKIP_INSTALL_RULES': 'ON'
+})
 quill_sp = cmake.subproject(
-    'quill'
+    'quill',
+    options: quill_cmake_options,
 )
-quill_dep = quill_sp.dependency('quill')
-add_project_arguments('-I' + meson.current_build_dir() + '/subprojects/quill/__CMake_build', language: 'cpp')
\ No newline at end of file
+quill_dep = quill_sp.dependency('quill')
\ No newline at end of file

From 93c9d5e8825f81ab3b034dd4460521f071e20a50 Mon Sep 17 00:00:00 2001
From: Emily Boudreaux <thomas@boudreauxmail.com>
Date: Wed, 30 Apr 2025 11:44:53 -0400
Subject: [PATCH 3/3] build(meson): switched almost all intermediate targets to
 shared libraries

---
 src/network/meson.build | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/network/meson.build b/src/network/meson.build
index 2add6361..41abf3fe 100644
--- a/src/network/meson.build
+++ b/src/network/meson.build
@@ -19,7 +19,7 @@ dependencies = [
 ]
 
 # Define the libnetwork library so it can be linked against by other parts of the build system
-libnetwork = static_library('network',
+libnetwork = library('network',
     network_sources, 
     include_directories: include_directories('public'),
     dependencies: dependencies,