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<div id="projectname">GridFire<span id="projectnumber"> 0.0.1a</span>
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<div id="projectbrief">General Purpose Nuclear Network</div>
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<div class="headertitle"><div class="title">engine_adaptive.cpp</div></div>
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<a href="engine__adaptive_8cpp.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a id="l00001" name="l00001"></a><span class="lineno"> 1</span><span class="preprocessor">#include "<a class="code" href="engine__adaptive_8h.html">gridfire/engine/engine_adaptive.h</a>"</span></div>
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<div class="line"><a id="l00002" name="l00002"></a><span class="lineno"> 2</span> </div>
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<div class="line"><a id="l00003" name="l00003"></a><span class="lineno"> 3</span><span class="preprocessor">#include <ranges></span></div>
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<div class="line"><a id="l00004" name="l00004"></a><span class="lineno"> 4</span><span class="preprocessor">#include <queue></span></div>
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<div class="line"><a id="l00005" name="l00005"></a><span class="lineno"> 5</span> </div>
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<div class="line"><a id="l00006" name="l00006"></a><span class="lineno"> 6</span><span class="preprocessor">#include "<a class="code" href="network_8h.html">gridfire/network.h</a>"</span></div>
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<div class="line"><a id="l00007" name="l00007"></a><span class="lineno"> 7</span> </div>
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<div class="line"><a id="l00008" name="l00008"></a><span class="lineno"> 8</span><span class="preprocessor">#include "quill/LogMacros.h"</span></div>
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<div class="line"><a id="l00009" name="l00009"></a><span class="lineno"> 9</span><span class="preprocessor">#include "quill/Logger.h"</span></div>
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<div class="line"><a id="l00010" name="l00010"></a><span class="lineno"> 10</span> </div>
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<div class="line"><a id="l00011" name="l00011"></a><span class="lineno"> 11</span><span class="keyword">namespace </span><a class="code hl_namespace" href="namespacegridfire.html">gridfire</a> {</div>
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<div class="line"><a id="l00012" name="l00012"></a><span class="lineno"> 12</span> <span class="keyword">using </span>fourdst::atomic::Species;</div>
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<div class="foldopen" id="foldopen00013" data-start="{" data-end="}">
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<div class="line"><a id="l00013" name="l00013"></a><span class="lineno"><a class="line" href="classgridfire_1_1_adaptive_engine_view.html#ad599363cdd457e72e2e2937b0222c455"> 13</a></span> <a class="code hl_function" href="classgridfire_1_1_adaptive_engine_view.html#ad599363cdd457e72e2e2937b0222c455">AdaptiveEngineView::AdaptiveEngineView</a>(</div>
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<div class="line"><a id="l00014" name="l00014"></a><span class="lineno"> 14</span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &baseEngine</div>
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<div class="line"><a id="l00015" name="l00015"></a><span class="lineno"> 15</span> ) :</div>
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||||
<div class="line"><a id="l00016" name="l00016"></a><span class="lineno"> 16</span> <a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#a4d38b46be9f25c7afe7ddd2b284253f8">m_baseEngine</a>(baseEngine),</div>
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||||
<div class="line"><a id="l00017" name="l00017"></a><span class="lineno"> 17</span> <a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#af4bc9fc6e4afcd6a53c49ca6e2a95940">m_activeSpecies</a>(baseEngine.<a class="code hl_function" href="classgridfire_1_1_adaptive_engine_view.html#ac83a8efe25c0e5b9bf7756ac3a500bb1">getNetworkSpecies</a>()),</div>
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||||
<div class="line"><a id="l00018" name="l00018"></a><span class="lineno"> 18</span> <a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#a19fc7e02e216b797aa643fa35e429800">m_activeReactions</a>(baseEngine.<a class="code hl_function" href="classgridfire_1_1_adaptive_engine_view.html#a12cc2f352678fba9688363ba1876ab9c">getNetworkReactions</a>()),</div>
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||||
<div class="line"><a id="l00019" name="l00019"></a><span class="lineno"> 19</span> <a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#a5f66204a0ff5b27eed243afddecb0093">m_speciesIndexMap</a>(<a class="code hl_function" href="classgridfire_1_1_adaptive_engine_view.html#a896d29325b4233e83d9298850b617a2d">constructSpeciesIndexMap</a>()),</div>
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||||
<div class="line"><a id="l00020" name="l00020"></a><span class="lineno"> 20</span> <a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#a21c6e33bbf8c18fd5b5eaabb469054de">m_reactionIndexMap</a>(<a class="code hl_function" href="classgridfire_1_1_adaptive_engine_view.html#a89614f4a48f60c4170a0197f45303e7c">constructReactionIndexMap</a>())</div>
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<div class="line"><a id="l00021" name="l00021"></a><span class="lineno"> 21</span> {</div>
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<div class="line"><a id="l00022" name="l00022"></a><span class="lineno"> 22</span> }</div>
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</div>
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<div class="line"><a id="l00023" name="l00023"></a><span class="lineno"> 23</span> </div>
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<div class="foldopen" id="foldopen00024" data-start="{" data-end="}">
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<div class="line"><a id="l00024" name="l00024"></a><span class="lineno"><a class="line" href="classgridfire_1_1_adaptive_engine_view.html#a896d29325b4233e83d9298850b617a2d"> 24</a></span> std::vector<size_t> <a class="code hl_function" href="classgridfire_1_1_adaptive_engine_view.html#a896d29325b4233e83d9298850b617a2d">AdaptiveEngineView::constructSpeciesIndexMap</a>()<span class="keyword"> const </span>{</div>
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<div class="line"><a id="l00025" name="l00025"></a><span class="lineno"> 25</span> LOG_TRACE_L1(<a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193">m_logger</a>, <span class="stringliteral">"Constructing species index map for adaptive engine view..."</span>);</div>
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<div class="line"><a id="l00026" name="l00026"></a><span class="lineno"> 26</span> std::unordered_map<Species, size_t> fullSpeciesReverseMap;</div>
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<div class="line"><a id="l00027" name="l00027"></a><span class="lineno"> 27</span> <span class="keyword">const</span> <span class="keyword">auto</span>& fullSpeciesList = <a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#a4d38b46be9f25c7afe7ddd2b284253f8">m_baseEngine</a>.getNetworkSpecies();</div>
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||||
<div class="line"><a id="l00028" name="l00028"></a><span class="lineno"> 28</span> </div>
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<div class="line"><a id="l00029" name="l00029"></a><span class="lineno"> 29</span> fullSpeciesReverseMap.reserve(fullSpeciesList.size());</div>
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<div class="line"><a id="l00030" name="l00030"></a><span class="lineno"> 30</span> </div>
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<div class="line"><a id="l00031" name="l00031"></a><span class="lineno"> 31</span> <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i = 0; i < fullSpeciesList.size(); ++i) {</div>
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<div class="line"><a id="l00032" name="l00032"></a><span class="lineno"> 32</span> fullSpeciesReverseMap[fullSpeciesList[i]] = i;</div>
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<div class="line"><a id="l00033" name="l00033"></a><span class="lineno"> 33</span> }</div>
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<div class="line"><a id="l00034" name="l00034"></a><span class="lineno"> 34</span> </div>
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<div class="line"><a id="l00035" name="l00035"></a><span class="lineno"> 35</span> std::vector<size_t> speciesIndexMap;</div>
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<div class="line"><a id="l00036" name="l00036"></a><span class="lineno"> 36</span> speciesIndexMap.reserve(<a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#af4bc9fc6e4afcd6a53c49ca6e2a95940">m_activeSpecies</a>.size());</div>
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||||
<div class="line"><a id="l00037" name="l00037"></a><span class="lineno"> 37</span> </div>
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<div class="line"><a id="l00038" name="l00038"></a><span class="lineno"> 38</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>& active_species : <a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#af4bc9fc6e4afcd6a53c49ca6e2a95940">m_activeSpecies</a>) {</div>
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<div class="line"><a id="l00039" name="l00039"></a><span class="lineno"> 39</span> <span class="keyword">auto</span> it = fullSpeciesReverseMap.find(active_species);</div>
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<div class="line"><a id="l00040" name="l00040"></a><span class="lineno"> 40</span> <span class="keywordflow">if</span> (it != fullSpeciesReverseMap.end()) {</div>
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<div class="line"><a id="l00041" name="l00041"></a><span class="lineno"> 41</span> speciesIndexMap.push_back(it->second);</div>
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<div class="line"><a id="l00042" name="l00042"></a><span class="lineno"> 42</span> } <span class="keywordflow">else</span> {</div>
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<div class="line"><a id="l00043" name="l00043"></a><span class="lineno"> 43</span> LOG_ERROR(<a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193">m_logger</a>, <span class="stringliteral">"Species '{}' not found in full species map."</span>, active_species.name());</div>
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||||
<div class="line"><a id="l00044" name="l00044"></a><span class="lineno"> 44</span> <a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193">m_logger</a> -> flush_log();</div>
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<div class="line"><a id="l00045" name="l00045"></a><span class="lineno"> 45</span> <span class="keywordflow">throw</span> std::runtime_error(<span class="stringliteral">"Species not found in full species map: "</span> + std::string(active_species.name()));</div>
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<div class="line"><a id="l00046" name="l00046"></a><span class="lineno"> 46</span> }</div>
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<div class="line"><a id="l00047" name="l00047"></a><span class="lineno"> 47</span> }</div>
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<div class="line"><a id="l00048" name="l00048"></a><span class="lineno"> 48</span> LOG_TRACE_L1(<a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193">m_logger</a>, <span class="stringliteral">"Species index map constructed with {} entries."</span>, speciesIndexMap.size());</div>
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<div class="line"><a id="l00049" name="l00049"></a><span class="lineno"> 49</span> <span class="keywordflow">return</span> speciesIndexMap;</div>
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<div class="line"><a id="l00050" name="l00050"></a><span class="lineno"> 50</span> </div>
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<div class="line"><a id="l00051" name="l00051"></a><span class="lineno"> 51</span> }</div>
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</div>
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<div class="line"><a id="l00052" name="l00052"></a><span class="lineno"> 52</span> </div>
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<div class="foldopen" id="foldopen00053" data-start="{" data-end="}">
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||||
<div class="line"><a id="l00053" name="l00053"></a><span class="lineno"><a class="line" href="classgridfire_1_1_adaptive_engine_view.html#a89614f4a48f60c4170a0197f45303e7c"> 53</a></span> std::vector<size_t> <a class="code hl_function" href="classgridfire_1_1_adaptive_engine_view.html#a89614f4a48f60c4170a0197f45303e7c">AdaptiveEngineView::constructReactionIndexMap</a>()<span class="keyword"> const </span>{</div>
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<div class="line"><a id="l00054" name="l00054"></a><span class="lineno"> 54</span> LOG_TRACE_L1(<a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193">m_logger</a>, <span class="stringliteral">"Constructing reaction index map for adaptive engine view..."</span>);</div>
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<div class="line"><a id="l00055" name="l00055"></a><span class="lineno"> 55</span> </div>
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<div class="line"><a id="l00056" name="l00056"></a><span class="lineno"> 56</span> <span class="comment">// --- Step 1: Create a reverse map using the reaction's unique ID as the key. ---</span></div>
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<div class="line"><a id="l00057" name="l00057"></a><span class="lineno"> 57</span> std::unordered_map<std::string_view, size_t> fullReactionReverseMap;</div>
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<div class="line"><a id="l00058" name="l00058"></a><span class="lineno"> 58</span> <span class="keyword">const</span> <span class="keyword">auto</span>& fullReactionSet = <a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#a4d38b46be9f25c7afe7ddd2b284253f8">m_baseEngine</a>.getNetworkReactions();</div>
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||||
<div class="line"><a id="l00059" name="l00059"></a><span class="lineno"> 59</span> fullReactionReverseMap.reserve(fullReactionSet.size());</div>
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<div class="line"><a id="l00060" name="l00060"></a><span class="lineno"> 60</span> </div>
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<div class="line"><a id="l00061" name="l00061"></a><span class="lineno"> 61</span> <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i_full = 0; i_full < fullReactionSet.size(); ++i_full) {</div>
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<div class="line"><a id="l00062" name="l00062"></a><span class="lineno"> 62</span> fullReactionReverseMap[fullReactionSet[i_full].id()] = i_full;</div>
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<div class="line"><a id="l00063" name="l00063"></a><span class="lineno"> 63</span> }</div>
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<div class="line"><a id="l00064" name="l00064"></a><span class="lineno"> 64</span> </div>
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<div class="line"><a id="l00065" name="l00065"></a><span class="lineno"> 65</span> <span class="comment">// --- Step 2: Build the final index map using the active reaction set. ---</span></div>
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<div class="line"><a id="l00066" name="l00066"></a><span class="lineno"> 66</span> std::vector<size_t> reactionIndexMap;</div>
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<div class="line"><a id="l00067" name="l00067"></a><span class="lineno"> 67</span> reactionIndexMap.reserve(<a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#a19fc7e02e216b797aa643fa35e429800">m_activeReactions</a>.size());</div>
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<div class="line"><a id="l00068" name="l00068"></a><span class="lineno"> 68</span> </div>
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<div class="line"><a id="l00069" name="l00069"></a><span class="lineno"> 69</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>& active_reaction_ptr : <a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#a19fc7e02e216b797aa643fa35e429800">m_activeReactions</a>) {</div>
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<div class="line"><a id="l00070" name="l00070"></a><span class="lineno"> 70</span> <span class="keyword">auto</span> it = fullReactionReverseMap.find(active_reaction_ptr.id());</div>
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<div class="line"><a id="l00071" name="l00071"></a><span class="lineno"> 71</span> </div>
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<div class="line"><a id="l00072" name="l00072"></a><span class="lineno"> 72</span> <span class="keywordflow">if</span> (it != fullReactionReverseMap.end()) {</div>
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<div class="line"><a id="l00073" name="l00073"></a><span class="lineno"> 73</span> reactionIndexMap.push_back(it->second);</div>
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<div class="line"><a id="l00074" name="l00074"></a><span class="lineno"> 74</span> } <span class="keywordflow">else</span> {</div>
|
||||
<div class="line"><a id="l00075" name="l00075"></a><span class="lineno"> 75</span> LOG_ERROR(<a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193">m_logger</a>, <span class="stringliteral">"Active reaction '{}' not found in base engine during reaction index map construction."</span>, active_reaction_ptr.id());</div>
|
||||
<div class="line"><a id="l00076" name="l00076"></a><span class="lineno"> 76</span> <a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193">m_logger</a>->flush_log();</div>
|
||||
<div class="line"><a id="l00077" name="l00077"></a><span class="lineno"> 77</span> <span class="keywordflow">throw</span> std::runtime_error(<span class="stringliteral">"Mismatch between active reactions and base engine."</span>);</div>
|
||||
<div class="line"><a id="l00078" name="l00078"></a><span class="lineno"> 78</span> }</div>
|
||||
<div class="line"><a id="l00079" name="l00079"></a><span class="lineno"> 79</span> }</div>
|
||||
<div class="line"><a id="l00080" name="l00080"></a><span class="lineno"> 80</span> </div>
|
||||
<div class="line"><a id="l00081" name="l00081"></a><span class="lineno"> 81</span> LOG_TRACE_L1(<a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193">m_logger</a>, <span class="stringliteral">"Reaction index map constructed with {} entries."</span>, reactionIndexMap.size());</div>
|
||||
<div class="line"><a id="l00082" name="l00082"></a><span class="lineno"> 82</span> <span class="keywordflow">return</span> reactionIndexMap;</div>
|
||||
<div class="line"><a id="l00083" name="l00083"></a><span class="lineno"> 83</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00084" name="l00084"></a><span class="lineno"> 84</span> </div>
|
||||
<div class="foldopen" id="foldopen00085" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00085" name="l00085"></a><span class="lineno"><a class="line" href="classgridfire_1_1_adaptive_engine_view.html#a44c4fb7568ddbb20a08f328c2fbf1fdf"> 85</a></span> <span class="keywordtype">void</span> <a class="code hl_function" href="classgridfire_1_1_adaptive_engine_view.html#a44c4fb7568ddbb20a08f328c2fbf1fdf">AdaptiveEngineView::update</a>(<span class="keyword">const</span> <a class="code hl_struct" href="structgridfire_1_1_net_in.html">NetIn</a>& netIn) {</div>
|
||||
<div class="line"><a id="l00086" name="l00086"></a><span class="lineno"> 86</span> LOG_TRACE_L1(<a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193">m_logger</a>, <span class="stringliteral">"Updating adaptive engine view..."</span>);</div>
|
||||
<div class="line"><a id="l00087" name="l00087"></a><span class="lineno"> 87</span> </div>
|
||||
<div class="line"><a id="l00088" name="l00088"></a><span class="lineno"> 88</span> <span class="keyword">const</span> <span class="keyword">auto</span>& fullSpeciesList = <a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#a4d38b46be9f25c7afe7ddd2b284253f8">m_baseEngine</a>.getNetworkSpecies();</div>
|
||||
<div class="line"><a id="l00089" name="l00089"></a><span class="lineno"> 89</span> std::vector<double>Y_full;</div>
|
||||
<div class="line"><a id="l00090" name="l00090"></a><span class="lineno"> 90</span> Y_full.reserve(fullSpeciesList.size());</div>
|
||||
<div class="line"><a id="l00091" name="l00091"></a><span class="lineno"> 91</span> </div>
|
||||
<div class="line"><a id="l00092" name="l00092"></a><span class="lineno"> 92</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>& species : fullSpeciesList) {</div>
|
||||
<div class="line"><a id="l00093" name="l00093"></a><span class="lineno"> 93</span> <span class="keywordflow">if</span> (netIn.<a class="code hl_variable" href="structgridfire_1_1_net_in.html#a13058f4929e72c1187abbebcddb8aed1">composition</a>.contains(species)) {</div>
|
||||
<div class="line"><a id="l00094" name="l00094"></a><span class="lineno"> 94</span> Y_full.push_back(netIn.<a class="code hl_variable" href="structgridfire_1_1_net_in.html#a13058f4929e72c1187abbebcddb8aed1">composition</a>.getMolarAbundance(std::string(species.name())));</div>
|
||||
<div class="line"><a id="l00095" name="l00095"></a><span class="lineno"> 95</span> } <span class="keywordflow">else</span> {</div>
|
||||
<div class="line"><a id="l00096" name="l00096"></a><span class="lineno"> 96</span> LOG_TRACE_L2(<a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193">m_logger</a>, <span class="stringliteral">"Species '{}' not found in composition. Setting abundance to 0.0."</span>, species.name());</div>
|
||||
<div class="line"><a id="l00097" name="l00097"></a><span class="lineno"> 97</span> Y_full.push_back(0.0);</div>
|
||||
<div class="line"><a id="l00098" name="l00098"></a><span class="lineno"> 98</span> }</div>
|
||||
<div class="line"><a id="l00099" name="l00099"></a><span class="lineno"> 99</span> }</div>
|
||||
<div class="line"><a id="l00100" name="l00100"></a><span class="lineno"> 100</span> </div>
|
||||
<div class="line"><a id="l00101" name="l00101"></a><span class="lineno"> 101</span> <span class="keyword">const</span> <span class="keywordtype">double</span> T9 = netIn.<a class="code hl_variable" href="structgridfire_1_1_net_in.html#a5be0f5195a5cd1dd177b9fc5ab83a7be">temperature</a> / 1e9; <span class="comment">// Convert temperature from Kelvin to T9 (T9 = T / 1e9)</span></div>
|
||||
<div class="line"><a id="l00102" name="l00102"></a><span class="lineno"> 102</span> <span class="keyword">const</span> <span class="keywordtype">double</span> rho = netIn.<a class="code hl_variable" href="structgridfire_1_1_net_in.html#a06f0dff9f8927b7cf2da3004c8fa1577">density</a>; <span class="comment">// Density in g/cm^3</span></div>
|
||||
<div class="line"><a id="l00103" name="l00103"></a><span class="lineno"> 103</span> </div>
|
||||
<div class="line"><a id="l00104" name="l00104"></a><span class="lineno"> 104</span> </div>
|
||||
<div class="line"><a id="l00105" name="l00105"></a><span class="lineno"> 105</span> std::vector<ReactionFlow> reactionFlows;</div>
|
||||
<div class="line"><a id="l00106" name="l00106"></a><span class="lineno"> 106</span> <span class="keyword">const</span> <span class="keyword">auto</span>& fullReactionSet = <a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#a4d38b46be9f25c7afe7ddd2b284253f8">m_baseEngine</a>.getNetworkReactions();</div>
|
||||
<div class="line"><a id="l00107" name="l00107"></a><span class="lineno"> 107</span> reactionFlows.reserve(fullReactionSet.size());</div>
|
||||
<div class="line"><a id="l00108" name="l00108"></a><span class="lineno"> 108</span> </div>
|
||||
<div class="line"><a id="l00109" name="l00109"></a><span class="lineno"> 109</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>& reactionPtr : fullReactionSet) {</div>
|
||||
<div class="line"><a id="l00110" name="l00110"></a><span class="lineno"> 110</span> <span class="keyword">const</span> <span class="keywordtype">double</span> flow = <a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#a4d38b46be9f25c7afe7ddd2b284253f8">m_baseEngine</a>.calculateMolarReactionFlow(reactionPtr, Y_full, T9, rho);</div>
|
||||
<div class="line"><a id="l00111" name="l00111"></a><span class="lineno"> 111</span> reactionFlows.push_back({&reactionPtr, flow});</div>
|
||||
<div class="line"><a id="l00112" name="l00112"></a><span class="lineno"> 112</span> }</div>
|
||||
<div class="line"><a id="l00113" name="l00113"></a><span class="lineno"> 113</span> </div>
|
||||
<div class="line"><a id="l00114" name="l00114"></a><span class="lineno"> 114</span> <span class="keywordtype">double</span> max_flow = 0.0;</div>
|
||||
<div class="line"><a id="l00115" name="l00115"></a><span class="lineno"> 115</span> <span class="keywordtype">double</span> min_flow = std::numeric_limits<double>::max();</div>
|
||||
<div class="line"><a id="l00116" name="l00116"></a><span class="lineno"> 116</span> <span class="keywordtype">double</span> flowSum = 0.0;</div>
|
||||
<div class="line"><a id="l00117" name="l00117"></a><span class="lineno"> 117</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>&[reactionPtr, flowRate] : reactionFlows) {</div>
|
||||
<div class="line"><a id="l00118" name="l00118"></a><span class="lineno"> 118</span> <span class="keywordflow">if</span> (flowRate > max_flow) {</div>
|
||||
<div class="line"><a id="l00119" name="l00119"></a><span class="lineno"> 119</span> max_flow = flowRate;</div>
|
||||
<div class="line"><a id="l00120" name="l00120"></a><span class="lineno"> 120</span> } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (flowRate < min_flow) {</div>
|
||||
<div class="line"><a id="l00121" name="l00121"></a><span class="lineno"> 121</span> min_flow = flowRate;</div>
|
||||
<div class="line"><a id="l00122" name="l00122"></a><span class="lineno"> 122</span> }</div>
|
||||
<div class="line"><a id="l00123" name="l00123"></a><span class="lineno"> 123</span> flowSum += flowRate;</div>
|
||||
<div class="line"><a id="l00124" name="l00124"></a><span class="lineno"> 124</span> LOG_TRACE_L2(<a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193">m_logger</a>, <span class="stringliteral">"Reaction '{}' has flow rate: {:0.3E} [mol/s]"</span>, reactionPtr->id(), flowRate);</div>
|
||||
<div class="line"><a id="l00125" name="l00125"></a><span class="lineno"> 125</span> }</div>
|
||||
<div class="line"><a id="l00126" name="l00126"></a><span class="lineno"> 126</span> flowSum /= reactionFlows.size();</div>
|
||||
<div class="line"><a id="l00127" name="l00127"></a><span class="lineno"> 127</span> </div>
|
||||
<div class="line"><a id="l00128" name="l00128"></a><span class="lineno"> 128</span> LOG_DEBUG(<a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193">m_logger</a>, <span class="stringliteral">"Maximum reaction flow rate in adaptive engine view: {:0.3E} [mol/s]"</span>, max_flow);</div>
|
||||
<div class="line"><a id="l00129" name="l00129"></a><span class="lineno"> 129</span> LOG_DEBUG(<a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193">m_logger</a>, <span class="stringliteral">"Minimum reaction flow rate in adaptive engine view: {:0.3E} [mol/s]"</span>, min_flow);</div>
|
||||
<div class="line"><a id="l00130" name="l00130"></a><span class="lineno"> 130</span> LOG_DEBUG(<a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193">m_logger</a>, <span class="stringliteral">"Average reaction flow rate in adaptive engine view: {:0.3E} [mol/s]"</span>, flowSum);</div>
|
||||
<div class="line"><a id="l00131" name="l00131"></a><span class="lineno"> 131</span> </div>
|
||||
<div class="line"><a id="l00132" name="l00132"></a><span class="lineno"> 132</span> <span class="keyword">const</span> <span class="keywordtype">double</span> relative_culling_threshold = <a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#a14171a9ccc45a63996a967c72983de30">m_config</a>.get<<span class="keywordtype">double</span>>(<span class="stringliteral">"gridfire:AdaptiveEngineView:RelativeCullingThreshold"</span>, 1e-75);</div>
|
||||
<div class="line"><a id="l00133" name="l00133"></a><span class="lineno"> 133</span> </div>
|
||||
<div class="line"><a id="l00134" name="l00134"></a><span class="lineno"> 134</span> <span class="keywordtype">double</span> absoluteCullingThreshold = relative_culling_threshold * max_flow;</div>
|
||||
<div class="line"><a id="l00135" name="l00135"></a><span class="lineno"> 135</span> LOG_DEBUG(<a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193">m_logger</a>, <span class="stringliteral">"Relative culling threshold: {:0.3E} ({})"</span>, relative_culling_threshold, absoluteCullingThreshold);</div>
|
||||
<div class="line"><a id="l00136" name="l00136"></a><span class="lineno"> 136</span> </div>
|
||||
<div class="line"><a id="l00137" name="l00137"></a><span class="lineno"> 137</span> <span class="comment">// --- Reaction Culling ---</span></div>
|
||||
<div class="line"><a id="l00138" name="l00138"></a><span class="lineno"> 138</span> LOG_TRACE_L1(<a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193">m_logger</a>, <span class="stringliteral">"Culling reactions based on reaction flow rates..."</span>);</div>
|
||||
<div class="line"><a id="l00139" name="l00139"></a><span class="lineno"> 139</span> std::vector<const reaction::Reaction*> flowCulledReactions;</div>
|
||||
<div class="line"><a id="l00140" name="l00140"></a><span class="lineno"> 140</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>&[reactionPtr, flowRate] : reactionFlows) {</div>
|
||||
<div class="line"><a id="l00141" name="l00141"></a><span class="lineno"> 141</span> <span class="keywordflow">if</span> (flowRate > absoluteCullingThreshold) {</div>
|
||||
<div class="line"><a id="l00142" name="l00142"></a><span class="lineno"> 142</span> LOG_TRACE_L2(<a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193">m_logger</a>, <span class="stringliteral">"Maintaining reaction '{}' with relative (abs) flow rate: {:0.3E} ({:0.3E} [mol/s])"</span>, reactionPtr->id(), flowRate/max_flow, flowRate);</div>
|
||||
<div class="line"><a id="l00143" name="l00143"></a><span class="lineno"> 143</span> flowCulledReactions.push_back(reactionPtr);</div>
|
||||
<div class="line"><a id="l00144" name="l00144"></a><span class="lineno"> 144</span> }</div>
|
||||
<div class="line"><a id="l00145" name="l00145"></a><span class="lineno"> 145</span> }</div>
|
||||
<div class="line"><a id="l00146" name="l00146"></a><span class="lineno"> 146</span> LOG_DEBUG(<a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193">m_logger</a>, <span class="stringliteral">"Selected {} (total: {}, culled: {}) reactions based on flow rates."</span>, flowCulledReactions.size(), fullReactionSet.size(), fullReactionSet.size() - flowCulledReactions.size());</div>
|
||||
<div class="line"><a id="l00147" name="l00147"></a><span class="lineno"> 147</span> </div>
|
||||
<div class="line"><a id="l00148" name="l00148"></a><span class="lineno"> 148</span> <span class="comment">// --- Connectivity Analysis ---</span></div>
|
||||
<div class="line"><a id="l00149" name="l00149"></a><span class="lineno"> 149</span> std::queue<Species> species_to_visit;</div>
|
||||
<div class="line"><a id="l00150" name="l00150"></a><span class="lineno"> 150</span> std::unordered_set<Species> reachable_species;</div>
|
||||
<div class="line"><a id="l00151" name="l00151"></a><span class="lineno"> 151</span> </div>
|
||||
<div class="line"><a id="l00152" name="l00152"></a><span class="lineno"> 152</span> <span class="keyword">constexpr</span> <span class="keywordtype">double</span> ABUNDANCE_FLOOR = 1e-12; <span class="comment">// Abundance floor for a species to be considered part of the initial fuel</span></div>
|
||||
<div class="line"><a id="l00153" name="l00153"></a><span class="lineno"> 153</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>& species : fullSpeciesList) {</div>
|
||||
<div class="line"><a id="l00154" name="l00154"></a><span class="lineno"> 154</span> <span class="keywordflow">if</span> (netIn.<a class="code hl_variable" href="structgridfire_1_1_net_in.html#a13058f4929e72c1187abbebcddb8aed1">composition</a>.contains(species) && netIn.<a class="code hl_variable" href="structgridfire_1_1_net_in.html#a13058f4929e72c1187abbebcddb8aed1">composition</a>.getMassFraction(std::string(species.name())) > ABUNDANCE_FLOOR) {</div>
|
||||
<div class="line"><a id="l00155" name="l00155"></a><span class="lineno"> 155</span> species_to_visit.push(species);</div>
|
||||
<div class="line"><a id="l00156" name="l00156"></a><span class="lineno"> 156</span> reachable_species.insert(species);</div>
|
||||
<div class="line"><a id="l00157" name="l00157"></a><span class="lineno"> 157</span> LOG_TRACE_L2(<a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193">m_logger</a>, <span class="stringliteral">"Species '{}' is part of the initial fuel."</span>, species.name());</div>
|
||||
<div class="line"><a id="l00158" name="l00158"></a><span class="lineno"> 158</span> }</div>
|
||||
<div class="line"><a id="l00159" name="l00159"></a><span class="lineno"> 159</span> }</div>
|
||||
<div class="line"><a id="l00160" name="l00160"></a><span class="lineno"> 160</span> std::unordered_map<Species, std::vector<const reaction::Reaction*>> reactant_to_reactions_map;</div>
|
||||
<div class="line"><a id="l00161" name="l00161"></a><span class="lineno"> 161</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>* reaction_ptr : flowCulledReactions) {</div>
|
||||
<div class="line"><a id="l00162" name="l00162"></a><span class="lineno"> 162</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>& reactant : reaction_ptr->reactants()) {</div>
|
||||
<div class="line"><a id="l00163" name="l00163"></a><span class="lineno"> 163</span> reactant_to_reactions_map[reactant].push_back(reaction_ptr);</div>
|
||||
<div class="line"><a id="l00164" name="l00164"></a><span class="lineno"> 164</span> }</div>
|
||||
<div class="line"><a id="l00165" name="l00165"></a><span class="lineno"> 165</span> }</div>
|
||||
<div class="line"><a id="l00166" name="l00166"></a><span class="lineno"> 166</span> </div>
|
||||
<div class="line"><a id="l00167" name="l00167"></a><span class="lineno"> 167</span> <span class="keywordflow">while</span> (!species_to_visit.empty()) {</div>
|
||||
<div class="line"><a id="l00168" name="l00168"></a><span class="lineno"> 168</span> Species currentSpecies = species_to_visit.front();</div>
|
||||
<div class="line"><a id="l00169" name="l00169"></a><span class="lineno"> 169</span> species_to_visit.pop();</div>
|
||||
<div class="line"><a id="l00170" name="l00170"></a><span class="lineno"> 170</span> </div>
|
||||
<div class="line"><a id="l00171" name="l00171"></a><span class="lineno"> 171</span> <span class="keyword">auto</span> it = reactant_to_reactions_map.find(currentSpecies);</div>
|
||||
<div class="line"><a id="l00172" name="l00172"></a><span class="lineno"> 172</span> <span class="keywordflow">if</span> (it == reactant_to_reactions_map.end()) {</div>
|
||||
<div class="line"><a id="l00173" name="l00173"></a><span class="lineno"> 173</span> <span class="keywordflow">continue</span>; <span class="comment">// The species does not initiate any further reactions</span></div>
|
||||
<div class="line"><a id="l00174" name="l00174"></a><span class="lineno"> 174</span> }</div>
|
||||
<div class="line"><a id="l00175" name="l00175"></a><span class="lineno"> 175</span> </div>
|
||||
<div class="line"><a id="l00176" name="l00176"></a><span class="lineno"> 176</span> <span class="keyword">const</span> <span class="keyword">auto</span>& reactions = it->second;</div>
|
||||
<div class="line"><a id="l00177" name="l00177"></a><span class="lineno"> 177</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>* reaction_ptr : reactions) {</div>
|
||||
<div class="line"><a id="l00178" name="l00178"></a><span class="lineno"> 178</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>& product : reaction_ptr->products()) {</div>
|
||||
<div class="line"><a id="l00179" name="l00179"></a><span class="lineno"> 179</span> <span class="keywordflow">if</span> (!reachable_species.contains(product)) {</div>
|
||||
<div class="line"><a id="l00180" name="l00180"></a><span class="lineno"> 180</span> reachable_species.insert(product);</div>
|
||||
<div class="line"><a id="l00181" name="l00181"></a><span class="lineno"> 181</span> species_to_visit.push(product);</div>
|
||||
<div class="line"><a id="l00182" name="l00182"></a><span class="lineno"> 182</span> LOG_TRACE_L2(<a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193">m_logger</a>, <span class="stringliteral">"Species '{}' is reachable via reaction '{}'."</span>, product.name(), reaction_ptr->id());</div>
|
||||
<div class="line"><a id="l00183" name="l00183"></a><span class="lineno"> 183</span> }</div>
|
||||
<div class="line"><a id="l00184" name="l00184"></a><span class="lineno"> 184</span> }</div>
|
||||
<div class="line"><a id="l00185" name="l00185"></a><span class="lineno"> 185</span> }</div>
|
||||
<div class="line"><a id="l00186" name="l00186"></a><span class="lineno"> 186</span> }</div>
|
||||
<div class="line"><a id="l00187" name="l00187"></a><span class="lineno"> 187</span> LOG_DEBUG(<a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193">m_logger</a>, <span class="stringliteral">"Reachable species count: {}"</span>, reachable_species.size());</div>
|
||||
<div class="line"><a id="l00188" name="l00188"></a><span class="lineno"> 188</span> </div>
|
||||
<div class="line"><a id="l00189" name="l00189"></a><span class="lineno"> 189</span> <a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#af4bc9fc6e4afcd6a53c49ca6e2a95940">m_activeSpecies</a>.assign(reachable_species.begin(), reachable_species.end());</div>
|
||||
<div class="line"><a id="l00190" name="l00190"></a><span class="lineno"> 190</span> std::ranges::sort(<a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#af4bc9fc6e4afcd6a53c49ca6e2a95940">m_activeSpecies</a>,</div>
|
||||
<div class="line"><a id="l00191" name="l00191"></a><span class="lineno"> 191</span> [](<span class="keyword">const</span> Species &a, <span class="keyword">const</span> Species &b) { <span class="keywordflow">return</span> a.mass() < b.mass(); });</div>
|
||||
<div class="line"><a id="l00192" name="l00192"></a><span class="lineno"> 192</span> </div>
|
||||
<div class="line"><a id="l00193" name="l00193"></a><span class="lineno"> 193</span> <a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#a19fc7e02e216b797aa643fa35e429800">m_activeReactions</a>.clear();</div>
|
||||
<div class="line"><a id="l00194" name="l00194"></a><span class="lineno"> 194</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>* reaction_ptr : flowCulledReactions) {</div>
|
||||
<div class="line"><a id="l00195" name="l00195"></a><span class="lineno"> 195</span> <span class="keywordtype">bool</span> all_reactants_present = <span class="keyword">true</span>;</div>
|
||||
<div class="line"><a id="l00196" name="l00196"></a><span class="lineno"> 196</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>& reactant : reaction_ptr->reactants()) {</div>
|
||||
<div class="line"><a id="l00197" name="l00197"></a><span class="lineno"> 197</span> <span class="keywordflow">if</span> (!reachable_species.contains(reactant)) {</div>
|
||||
<div class="line"><a id="l00198" name="l00198"></a><span class="lineno"> 198</span> all_reactants_present = <span class="keyword">false</span>;</div>
|
||||
<div class="line"><a id="l00199" name="l00199"></a><span class="lineno"> 199</span> <span class="keywordflow">break</span>;</div>
|
||||
<div class="line"><a id="l00200" name="l00200"></a><span class="lineno"> 200</span> }</div>
|
||||
<div class="line"><a id="l00201" name="l00201"></a><span class="lineno"> 201</span> }</div>
|
||||
<div class="line"><a id="l00202" name="l00202"></a><span class="lineno"> 202</span> </div>
|
||||
<div class="line"><a id="l00203" name="l00203"></a><span class="lineno"> 203</span> <span class="keywordflow">if</span> (all_reactants_present) {</div>
|
||||
<div class="line"><a id="l00204" name="l00204"></a><span class="lineno"> 204</span> <a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#a19fc7e02e216b797aa643fa35e429800">m_activeReactions</a>.add_reaction(*reaction_ptr);</div>
|
||||
<div class="line"><a id="l00205" name="l00205"></a><span class="lineno"> 205</span> LOG_TRACE_L2(<a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193">m_logger</a>, <span class="stringliteral">"Maintaining reaction '{}' with all reactants present."</span>, reaction_ptr->id());</div>
|
||||
<div class="line"><a id="l00206" name="l00206"></a><span class="lineno"> 206</span> } <span class="keywordflow">else</span> {</div>
|
||||
<div class="line"><a id="l00207" name="l00207"></a><span class="lineno"> 207</span> LOG_TRACE_L1(<a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193">m_logger</a>, <span class="stringliteral">"Culling reaction '{}' due to missing reactants."</span>, reaction_ptr->id());</div>
|
||||
<div class="line"><a id="l00208" name="l00208"></a><span class="lineno"> 208</span> }</div>
|
||||
<div class="line"><a id="l00209" name="l00209"></a><span class="lineno"> 209</span> }</div>
|
||||
<div class="line"><a id="l00210" name="l00210"></a><span class="lineno"> 210</span> LOG_DEBUG(<a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193">m_logger</a>, <span class="stringliteral">"Active reactions count: {} (total: {}, culled: {}, culled due to connectivity: {})"</span>, <a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#a19fc7e02e216b797aa643fa35e429800">m_activeReactions</a>.size(),</div>
|
||||
<div class="line"><a id="l00211" name="l00211"></a><span class="lineno"> 211</span> fullReactionSet.size(), fullReactionSet.size() - <a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#a19fc7e02e216b797aa643fa35e429800">m_activeReactions</a>.size(), flowCulledReactions.size() - <a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#a19fc7e02e216b797aa643fa35e429800">m_activeReactions</a>.size());</div>
|
||||
<div class="line"><a id="l00212" name="l00212"></a><span class="lineno"> 212</span> </div>
|
||||
<div class="line"><a id="l00213" name="l00213"></a><span class="lineno"> 213</span> <a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#a5f66204a0ff5b27eed243afddecb0093">m_speciesIndexMap</a> = <a class="code hl_function" href="classgridfire_1_1_adaptive_engine_view.html#a896d29325b4233e83d9298850b617a2d">constructSpeciesIndexMap</a>();</div>
|
||||
<div class="line"><a id="l00214" name="l00214"></a><span class="lineno"> 214</span> <a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#a21c6e33bbf8c18fd5b5eaabb469054de">m_reactionIndexMap</a> = <a class="code hl_function" href="classgridfire_1_1_adaptive_engine_view.html#a89614f4a48f60c4170a0197f45303e7c">constructReactionIndexMap</a>();</div>
|
||||
<div class="line"><a id="l00215" name="l00215"></a><span class="lineno"> 215</span> </div>
|
||||
<div class="line"><a id="l00216" name="l00216"></a><span class="lineno"> 216</span> <a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#a63580db57e0f48f508906a11ccfd465e">m_isStale</a> = <span class="keyword">false</span>;</div>
|
||||
<div class="line"><a id="l00217" name="l00217"></a><span class="lineno"> 217</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00218" name="l00218"></a><span class="lineno"> 218</span> </div>
|
||||
<div class="foldopen" id="foldopen00219" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00219" name="l00219"></a><span class="lineno"><a class="line" href="classgridfire_1_1_adaptive_engine_view.html#ac83a8efe25c0e5b9bf7756ac3a500bb1"> 219</a></span> <span class="keyword">const</span> std::vector<Species> & <a class="code hl_function" href="classgridfire_1_1_adaptive_engine_view.html#ac83a8efe25c0e5b9bf7756ac3a500bb1">AdaptiveEngineView::getNetworkSpecies</a>()<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00220" name="l00220"></a><span class="lineno"> 220</span> <span class="keywordflow">return</span> <a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#af4bc9fc6e4afcd6a53c49ca6e2a95940">m_activeSpecies</a>;</div>
|
||||
<div class="line"><a id="l00221" name="l00221"></a><span class="lineno"> 221</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00222" name="l00222"></a><span class="lineno"> 222</span> </div>
|
||||
<div class="foldopen" id="foldopen00223" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00223" name="l00223"></a><span class="lineno"><a class="line" href="classgridfire_1_1_adaptive_engine_view.html#a7b276b7210be588263395bdb0497fc6d"> 223</a></span> <a class="code hl_struct" href="structgridfire_1_1_step_derivatives.html">StepDerivatives<double></a> <a class="code hl_function" href="classgridfire_1_1_adaptive_engine_view.html#a7b276b7210be588263395bdb0497fc6d">AdaptiveEngineView::calculateRHSAndEnergy</a>(</div>
|
||||
<div class="line"><a id="l00224" name="l00224"></a><span class="lineno"> 224</span> <span class="keyword">const</span> std::vector<double> &Y_culled,</div>
|
||||
<div class="line"><a id="l00225" name="l00225"></a><span class="lineno"> 225</span> <span class="keyword">const</span> <span class="keywordtype">double</span> T9,</div>
|
||||
<div class="line"><a id="l00226" name="l00226"></a><span class="lineno"> 226</span> <span class="keyword">const</span> <span class="keywordtype">double</span> rho</div>
|
||||
<div class="line"><a id="l00227" name="l00227"></a><span class="lineno"> 227</span> )<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00228" name="l00228"></a><span class="lineno"> 228</span> <a class="code hl_function" href="classgridfire_1_1_adaptive_engine_view.html#aedc0dedb51c81e03f253cc409a5d5c40">validateState</a>();</div>
|
||||
<div class="line"><a id="l00229" name="l00229"></a><span class="lineno"> 229</span> </div>
|
||||
<div class="line"><a id="l00230" name="l00230"></a><span class="lineno"> 230</span> <span class="keyword">const</span> <span class="keyword">auto</span> Y_full = <a class="code hl_function" href="classgridfire_1_1_adaptive_engine_view.html#a68695f056b660e91285b7e5a931612e1">mapCulledToFull</a>(Y_culled);</div>
|
||||
<div class="line"><a id="l00231" name="l00231"></a><span class="lineno"> 231</span> </div>
|
||||
<div class="line"><a id="l00232" name="l00232"></a><span class="lineno"> 232</span> <span class="keyword">const</span> <span class="keyword">auto</span> [dydt, nuclearEnergyGenerationRate] = <a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#a4d38b46be9f25c7afe7ddd2b284253f8">m_baseEngine</a>.calculateRHSAndEnergy(Y_full, T9, rho);</div>
|
||||
<div class="line"><a id="l00233" name="l00233"></a><span class="lineno"> 233</span> </div>
|
||||
<div class="line"><a id="l00234" name="l00234"></a><span class="lineno"> 234</span> <a class="code hl_struct" href="structgridfire_1_1_step_derivatives.html">StepDerivatives<double></a> culledResults;</div>
|
||||
<div class="line"><a id="l00235" name="l00235"></a><span class="lineno"> 235</span> culledResults.<a class="code hl_variable" href="structgridfire_1_1_step_derivatives.html#ab4aeb41be952c7b5844e1ee81fef9008">nuclearEnergyGenerationRate</a> = nuclearEnergyGenerationRate;</div>
|
||||
<div class="line"><a id="l00236" name="l00236"></a><span class="lineno"> 236</span> culledResults.<a class="code hl_variable" href="structgridfire_1_1_step_derivatives.html#ae0de268b86c2404379409c4feae0b34d">dydt</a> = <a class="code hl_function" href="classgridfire_1_1_adaptive_engine_view.html#a3d9d8e862d1c2f0a8ba460c57f6a7f44">mapFullToCulled</a>(dydt);</div>
|
||||
<div class="line"><a id="l00237" name="l00237"></a><span class="lineno"> 237</span> </div>
|
||||
<div class="line"><a id="l00238" name="l00238"></a><span class="lineno"> 238</span> <span class="keywordflow">return</span> culledResults;</div>
|
||||
<div class="line"><a id="l00239" name="l00239"></a><span class="lineno"> 239</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00240" name="l00240"></a><span class="lineno"> 240</span> </div>
|
||||
<div class="foldopen" id="foldopen00241" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00241" name="l00241"></a><span class="lineno"><a class="line" href="classgridfire_1_1_adaptive_engine_view.html#ac9aab6f60e80a9228b2b19b1b10449ef"> 241</a></span> <span class="keywordtype">void</span> <a class="code hl_function" href="classgridfire_1_1_adaptive_engine_view.html#ac9aab6f60e80a9228b2b19b1b10449ef">AdaptiveEngineView::generateJacobianMatrix</a>(</div>
|
||||
<div class="line"><a id="l00242" name="l00242"></a><span class="lineno"> 242</span> <span class="keyword">const</span> std::vector<double> &Y_culled,</div>
|
||||
<div class="line"><a id="l00243" name="l00243"></a><span class="lineno"> 243</span> <span class="keyword">const</span> <span class="keywordtype">double</span> T9,</div>
|
||||
<div class="line"><a id="l00244" name="l00244"></a><span class="lineno"> 244</span> <span class="keyword">const</span> <span class="keywordtype">double</span> rho</div>
|
||||
<div class="line"><a id="l00245" name="l00245"></a><span class="lineno"> 245</span> ) {</div>
|
||||
<div class="line"><a id="l00246" name="l00246"></a><span class="lineno"> 246</span> <a class="code hl_function" href="classgridfire_1_1_adaptive_engine_view.html#aedc0dedb51c81e03f253cc409a5d5c40">validateState</a>();</div>
|
||||
<div class="line"><a id="l00247" name="l00247"></a><span class="lineno"> 247</span> <span class="keyword">const</span> <span class="keyword">auto</span> Y_full = <a class="code hl_function" href="classgridfire_1_1_adaptive_engine_view.html#a68695f056b660e91285b7e5a931612e1">mapCulledToFull</a>(Y_culled);</div>
|
||||
<div class="line"><a id="l00248" name="l00248"></a><span class="lineno"> 248</span> </div>
|
||||
<div class="line"><a id="l00249" name="l00249"></a><span class="lineno"> 249</span> <a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#a4d38b46be9f25c7afe7ddd2b284253f8">m_baseEngine</a>.generateJacobianMatrix(Y_full, T9, rho);</div>
|
||||
<div class="line"><a id="l00250" name="l00250"></a><span class="lineno"> 250</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00251" name="l00251"></a><span class="lineno"> 251</span> </div>
|
||||
<div class="foldopen" id="foldopen00252" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00252" name="l00252"></a><span class="lineno"><a class="line" href="classgridfire_1_1_adaptive_engine_view.html#a4710d218c8a0fd161e994ecd60b48e58"> 252</a></span> <span class="keywordtype">double</span> <a class="code hl_function" href="classgridfire_1_1_adaptive_engine_view.html#a4710d218c8a0fd161e994ecd60b48e58">AdaptiveEngineView::getJacobianMatrixEntry</a>(</div>
|
||||
<div class="line"><a id="l00253" name="l00253"></a><span class="lineno"> 253</span> <span class="keyword">const</span> <span class="keywordtype">int</span> i_culled,</div>
|
||||
<div class="line"><a id="l00254" name="l00254"></a><span class="lineno"> 254</span> <span class="keyword">const</span> <span class="keywordtype">int</span> j_culled</div>
|
||||
<div class="line"><a id="l00255" name="l00255"></a><span class="lineno"> 255</span> )<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00256" name="l00256"></a><span class="lineno"> 256</span> <a class="code hl_function" href="classgridfire_1_1_adaptive_engine_view.html#aedc0dedb51c81e03f253cc409a5d5c40">validateState</a>();</div>
|
||||
<div class="line"><a id="l00257" name="l00257"></a><span class="lineno"> 257</span> <span class="keyword">const</span> <span class="keywordtype">size_t</span> i_full = <a class="code hl_function" href="classgridfire_1_1_adaptive_engine_view.html#a256d14a333f9401039b826cc889761a8">mapCulledToFullSpeciesIndex</a>(i_culled);</div>
|
||||
<div class="line"><a id="l00258" name="l00258"></a><span class="lineno"> 258</span> <span class="keyword">const</span> <span class="keywordtype">size_t</span> j_full = <a class="code hl_function" href="classgridfire_1_1_adaptive_engine_view.html#a256d14a333f9401039b826cc889761a8">mapCulledToFullSpeciesIndex</a>(j_culled);</div>
|
||||
<div class="line"><a id="l00259" name="l00259"></a><span class="lineno"> 259</span> </div>
|
||||
<div class="line"><a id="l00260" name="l00260"></a><span class="lineno"> 260</span> <span class="keywordflow">return</span> <a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#a4d38b46be9f25c7afe7ddd2b284253f8">m_baseEngine</a>.getJacobianMatrixEntry(i_full, j_full);</div>
|
||||
<div class="line"><a id="l00261" name="l00261"></a><span class="lineno"> 261</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00262" name="l00262"></a><span class="lineno"> 262</span> </div>
|
||||
<div class="foldopen" id="foldopen00263" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00263" name="l00263"></a><span class="lineno"><a class="line" href="classgridfire_1_1_adaptive_engine_view.html#a231193a61ba5a31e8eb92b0d4ce69111"> 263</a></span> <span class="keywordtype">void</span> <a class="code hl_function" href="classgridfire_1_1_adaptive_engine_view.html#a231193a61ba5a31e8eb92b0d4ce69111">AdaptiveEngineView::generateStoichiometryMatrix</a>() {</div>
|
||||
<div class="line"><a id="l00264" name="l00264"></a><span class="lineno"> 264</span> <a class="code hl_function" href="classgridfire_1_1_adaptive_engine_view.html#aedc0dedb51c81e03f253cc409a5d5c40">validateState</a>();</div>
|
||||
<div class="line"><a id="l00265" name="l00265"></a><span class="lineno"> 265</span> <a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#a4d38b46be9f25c7afe7ddd2b284253f8">m_baseEngine</a>.generateStoichiometryMatrix();</div>
|
||||
<div class="line"><a id="l00266" name="l00266"></a><span class="lineno"> 266</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00267" name="l00267"></a><span class="lineno"> 267</span> </div>
|
||||
<div class="foldopen" id="foldopen00268" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00268" name="l00268"></a><span class="lineno"><a class="line" href="classgridfire_1_1_adaptive_engine_view.html#a67b4ea8cad115394bb4a42cc39d696f9"> 268</a></span> <span class="keywordtype">int</span> <a class="code hl_function" href="classgridfire_1_1_adaptive_engine_view.html#a67b4ea8cad115394bb4a42cc39d696f9">AdaptiveEngineView::getStoichiometryMatrixEntry</a>(</div>
|
||||
<div class="line"><a id="l00269" name="l00269"></a><span class="lineno"> 269</span> <span class="keyword">const</span> <span class="keywordtype">int</span> speciesIndex_culled,</div>
|
||||
<div class="line"><a id="l00270" name="l00270"></a><span class="lineno"> 270</span> <span class="keyword">const</span> <span class="keywordtype">int</span> reactionIndex_culled</div>
|
||||
<div class="line"><a id="l00271" name="l00271"></a><span class="lineno"> 271</span> )<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00272" name="l00272"></a><span class="lineno"> 272</span> <a class="code hl_function" href="classgridfire_1_1_adaptive_engine_view.html#aedc0dedb51c81e03f253cc409a5d5c40">validateState</a>();</div>
|
||||
<div class="line"><a id="l00273" name="l00273"></a><span class="lineno"> 273</span> <span class="keyword">const</span> <span class="keywordtype">size_t</span> speciesIndex_full = <a class="code hl_function" href="classgridfire_1_1_adaptive_engine_view.html#a256d14a333f9401039b826cc889761a8">mapCulledToFullSpeciesIndex</a>(speciesIndex_culled);</div>
|
||||
<div class="line"><a id="l00274" name="l00274"></a><span class="lineno"> 274</span> <span class="keyword">const</span> <span class="keywordtype">size_t</span> reactionIndex_full = <a class="code hl_function" href="classgridfire_1_1_adaptive_engine_view.html#a91e742642d8a8d9ec0620779927e5101">mapCulledToFullReactionIndex</a>(reactionIndex_culled);</div>
|
||||
<div class="line"><a id="l00275" name="l00275"></a><span class="lineno"> 275</span> <span class="keywordflow">return</span> <a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#a4d38b46be9f25c7afe7ddd2b284253f8">m_baseEngine</a>.getStoichiometryMatrixEntry(speciesIndex_full, reactionIndex_full);</div>
|
||||
<div class="line"><a id="l00276" name="l00276"></a><span class="lineno"> 276</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00277" name="l00277"></a><span class="lineno"> 277</span> </div>
|
||||
<div class="foldopen" id="foldopen00278" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00278" name="l00278"></a><span class="lineno"><a class="line" href="classgridfire_1_1_adaptive_engine_view.html#a048d4b1d41ecb4125a558d1b9ed7cb31"> 278</a></span> <span class="keywordtype">double</span> <a class="code hl_function" href="classgridfire_1_1_adaptive_engine_view.html#a048d4b1d41ecb4125a558d1b9ed7cb31">AdaptiveEngineView::calculateMolarReactionFlow</a>(</div>
|
||||
<div class="line"><a id="l00279" name="l00279"></a><span class="lineno"> 279</span> <span class="keyword">const</span> <a class="code hl_class" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> &<a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a>,</div>
|
||||
<div class="line"><a id="l00280" name="l00280"></a><span class="lineno"> 280</span> <span class="keyword">const</span> std::vector<double> &Y_culled,</div>
|
||||
<div class="line"><a id="l00281" name="l00281"></a><span class="lineno"> 281</span> <span class="keyword">const</span> <span class="keywordtype">double</span> T9,</div>
|
||||
<div class="line"><a id="l00282" name="l00282"></a><span class="lineno"> 282</span> <span class="keyword">const</span> <span class="keywordtype">double</span> rho</div>
|
||||
<div class="line"><a id="l00283" name="l00283"></a><span class="lineno"> 283</span> )<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00284" name="l00284"></a><span class="lineno"> 284</span> <a class="code hl_function" href="classgridfire_1_1_adaptive_engine_view.html#aedc0dedb51c81e03f253cc409a5d5c40">validateState</a>();</div>
|
||||
<div class="line"><a id="l00285" name="l00285"></a><span class="lineno"> 285</span> <span class="keywordflow">if</span> (!<a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#a19fc7e02e216b797aa643fa35e429800">m_activeReactions</a>.contains(<a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a>)) {</div>
|
||||
<div class="line"><a id="l00286" name="l00286"></a><span class="lineno"> 286</span> LOG_ERROR(<a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193">m_logger</a>, <span class="stringliteral">"Reaction '{}' is not part of the active reactions in the adaptive engine view."</span>, <a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a>.id());</div>
|
||||
<div class="line"><a id="l00287" name="l00287"></a><span class="lineno"> 287</span> <a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193">m_logger</a> -> flush_log();</div>
|
||||
<div class="line"><a id="l00288" name="l00288"></a><span class="lineno"> 288</span> <span class="keywordflow">throw</span> std::runtime_error(<span class="stringliteral">"Reaction not found in active reactions: "</span> + std::string(<a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a>.id()));</div>
|
||||
<div class="line"><a id="l00289" name="l00289"></a><span class="lineno"> 289</span> }</div>
|
||||
<div class="line"><a id="l00290" name="l00290"></a><span class="lineno"> 290</span> <span class="keyword">const</span> <span class="keyword">auto</span> Y = <a class="code hl_function" href="classgridfire_1_1_adaptive_engine_view.html#a68695f056b660e91285b7e5a931612e1">mapCulledToFull</a>(Y_culled);</div>
|
||||
<div class="line"><a id="l00291" name="l00291"></a><span class="lineno"> 291</span> </div>
|
||||
<div class="line"><a id="l00292" name="l00292"></a><span class="lineno"> 292</span> <span class="keywordflow">return</span> <a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#a4d38b46be9f25c7afe7ddd2b284253f8">m_baseEngine</a>.calculateMolarReactionFlow(<a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a>, Y, T9, rho);</div>
|
||||
<div class="line"><a id="l00293" name="l00293"></a><span class="lineno"> 293</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00294" name="l00294"></a><span class="lineno"> 294</span> </div>
|
||||
<div class="foldopen" id="foldopen00295" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00295" name="l00295"></a><span class="lineno"><a class="line" href="classgridfire_1_1_adaptive_engine_view.html#a12cc2f352678fba9688363ba1876ab9c"> 295</a></span> <span class="keyword">const</span> <a class="code hl_class" href="classgridfire_1_1reaction_1_1_logical_reaction_set.html">reaction::LogicalReactionSet</a> & <a class="code hl_function" href="classgridfire_1_1_adaptive_engine_view.html#a12cc2f352678fba9688363ba1876ab9c">AdaptiveEngineView::getNetworkReactions</a>()<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00296" name="l00296"></a><span class="lineno"> 296</span> <span class="keywordflow">return</span> <a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#a19fc7e02e216b797aa643fa35e429800">m_activeReactions</a>;</div>
|
||||
<div class="line"><a id="l00297" name="l00297"></a><span class="lineno"> 297</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00298" name="l00298"></a><span class="lineno"> 298</span> </div>
|
||||
<div class="foldopen" id="foldopen00299" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00299" name="l00299"></a><span class="lineno"><a class="line" href="classgridfire_1_1_adaptive_engine_view.html#a93b38d0fdc4647f6f7340172dae17872"> 299</a></span> std::unordered_map<Species, double> <a class="code hl_function" href="classgridfire_1_1_adaptive_engine_view.html#a93b38d0fdc4647f6f7340172dae17872">AdaptiveEngineView::getSpeciesTimescales</a>(</div>
|
||||
<div class="line"><a id="l00300" name="l00300"></a><span class="lineno"> 300</span> <span class="keyword">const</span> std::vector<double> &Y_culled,</div>
|
||||
<div class="line"><a id="l00301" name="l00301"></a><span class="lineno"> 301</span> <span class="keyword">const</span> <span class="keywordtype">double</span> T9,</div>
|
||||
<div class="line"><a id="l00302" name="l00302"></a><span class="lineno"> 302</span> <span class="keyword">const</span> <span class="keywordtype">double</span> rho</div>
|
||||
<div class="line"><a id="l00303" name="l00303"></a><span class="lineno"> 303</span> )<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00304" name="l00304"></a><span class="lineno"> 304</span> <a class="code hl_function" href="classgridfire_1_1_adaptive_engine_view.html#aedc0dedb51c81e03f253cc409a5d5c40">validateState</a>();</div>
|
||||
<div class="line"><a id="l00305" name="l00305"></a><span class="lineno"> 305</span> <span class="keyword">const</span> <span class="keyword">auto</span> Y_full = <a class="code hl_function" href="classgridfire_1_1_adaptive_engine_view.html#a68695f056b660e91285b7e5a931612e1">mapCulledToFull</a>(Y_culled);</div>
|
||||
<div class="line"><a id="l00306" name="l00306"></a><span class="lineno"> 306</span> <span class="keyword">const</span> <span class="keyword">auto</span> fullTimescales = <a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#a4d38b46be9f25c7afe7ddd2b284253f8">m_baseEngine</a>.getSpeciesTimescales(Y_full, T9, rho);</div>
|
||||
<div class="line"><a id="l00307" name="l00307"></a><span class="lineno"> 307</span> </div>
|
||||
<div class="line"><a id="l00308" name="l00308"></a><span class="lineno"> 308</span> std::unordered_map<Species, double> culledTimescales;</div>
|
||||
<div class="line"><a id="l00309" name="l00309"></a><span class="lineno"> 309</span> culledTimescales.reserve(<a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#af4bc9fc6e4afcd6a53c49ca6e2a95940">m_activeSpecies</a>.size());</div>
|
||||
<div class="line"><a id="l00310" name="l00310"></a><span class="lineno"> 310</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>& active_species : <a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#af4bc9fc6e4afcd6a53c49ca6e2a95940">m_activeSpecies</a>) {</div>
|
||||
<div class="line"><a id="l00311" name="l00311"></a><span class="lineno"> 311</span> <span class="keywordflow">if</span> (fullTimescales.contains(active_species)) {</div>
|
||||
<div class="line"><a id="l00312" name="l00312"></a><span class="lineno"> 312</span> culledTimescales[active_species] = fullTimescales.at(active_species);</div>
|
||||
<div class="line"><a id="l00313" name="l00313"></a><span class="lineno"> 313</span> }</div>
|
||||
<div class="line"><a id="l00314" name="l00314"></a><span class="lineno"> 314</span> }</div>
|
||||
<div class="line"><a id="l00315" name="l00315"></a><span class="lineno"> 315</span> <span class="keywordflow">return</span> culledTimescales;</div>
|
||||
<div class="line"><a id="l00316" name="l00316"></a><span class="lineno"> 316</span> </div>
|
||||
<div class="line"><a id="l00317" name="l00317"></a><span class="lineno"> 317</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00318" name="l00318"></a><span class="lineno"> 318</span> </div>
|
||||
<div class="foldopen" id="foldopen00319" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00319" name="l00319"></a><span class="lineno"><a class="line" href="classgridfire_1_1_adaptive_engine_view.html#a68695f056b660e91285b7e5a931612e1"> 319</a></span> std::vector<double> <a class="code hl_function" href="classgridfire_1_1_adaptive_engine_view.html#a68695f056b660e91285b7e5a931612e1">AdaptiveEngineView::mapCulledToFull</a>(<span class="keyword">const</span> std::vector<double>& culled)<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00320" name="l00320"></a><span class="lineno"> 320</span> std::vector<double> full(<a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#a4d38b46be9f25c7afe7ddd2b284253f8">m_baseEngine</a>.getNetworkSpecies().size(), 0.0);</div>
|
||||
<div class="line"><a id="l00321" name="l00321"></a><span class="lineno"> 321</span> <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i_culled = 0; i_culled < culled.size(); ++i_culled) {</div>
|
||||
<div class="line"><a id="l00322" name="l00322"></a><span class="lineno"> 322</span> <span class="keyword">const</span> <span class="keywordtype">size_t</span> i_full = <a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#a5f66204a0ff5b27eed243afddecb0093">m_speciesIndexMap</a>[i_culled];</div>
|
||||
<div class="line"><a id="l00323" name="l00323"></a><span class="lineno"> 323</span> full[i_full] += culled[i_culled];</div>
|
||||
<div class="line"><a id="l00324" name="l00324"></a><span class="lineno"> 324</span> }</div>
|
||||
<div class="line"><a id="l00325" name="l00325"></a><span class="lineno"> 325</span> <span class="keywordflow">return</span> full;</div>
|
||||
<div class="line"><a id="l00326" name="l00326"></a><span class="lineno"> 326</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00327" name="l00327"></a><span class="lineno"> 327</span> </div>
|
||||
<div class="foldopen" id="foldopen00328" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00328" name="l00328"></a><span class="lineno"><a class="line" href="classgridfire_1_1_adaptive_engine_view.html#a3d9d8e862d1c2f0a8ba460c57f6a7f44"> 328</a></span> std::vector<double> <a class="code hl_function" href="classgridfire_1_1_adaptive_engine_view.html#a3d9d8e862d1c2f0a8ba460c57f6a7f44">AdaptiveEngineView::mapFullToCulled</a>(<span class="keyword">const</span> std::vector<double>& full)<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00329" name="l00329"></a><span class="lineno"> 329</span> std::vector<double> culled(<a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#af4bc9fc6e4afcd6a53c49ca6e2a95940">m_activeSpecies</a>.size(), 0.0);</div>
|
||||
<div class="line"><a id="l00330" name="l00330"></a><span class="lineno"> 330</span> <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i_culled = 0; i_culled < <a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#af4bc9fc6e4afcd6a53c49ca6e2a95940">m_activeSpecies</a>.size(); ++i_culled) {</div>
|
||||
<div class="line"><a id="l00331" name="l00331"></a><span class="lineno"> 331</span> <span class="keyword">const</span> <span class="keywordtype">size_t</span> i_full = <a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#a5f66204a0ff5b27eed243afddecb0093">m_speciesIndexMap</a>[i_culled];</div>
|
||||
<div class="line"><a id="l00332" name="l00332"></a><span class="lineno"> 332</span> culled[i_culled] = full[i_full];</div>
|
||||
<div class="line"><a id="l00333" name="l00333"></a><span class="lineno"> 333</span> }</div>
|
||||
<div class="line"><a id="l00334" name="l00334"></a><span class="lineno"> 334</span> <span class="keywordflow">return</span> culled;</div>
|
||||
<div class="line"><a id="l00335" name="l00335"></a><span class="lineno"> 335</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00336" name="l00336"></a><span class="lineno"> 336</span> </div>
|
||||
<div class="foldopen" id="foldopen00337" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00337" name="l00337"></a><span class="lineno"><a class="line" href="classgridfire_1_1_adaptive_engine_view.html#a256d14a333f9401039b826cc889761a8"> 337</a></span> <span class="keywordtype">size_t</span> <a class="code hl_function" href="classgridfire_1_1_adaptive_engine_view.html#a256d14a333f9401039b826cc889761a8">AdaptiveEngineView::mapCulledToFullSpeciesIndex</a>(<span class="keywordtype">size_t</span> culledSpeciesIndex)<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00338" name="l00338"></a><span class="lineno"> 338</span> <span class="keywordflow">if</span> (culledSpeciesIndex < 0 || culledSpeciesIndex >= <span class="keyword">static_cast<</span><span class="keywordtype">int</span><span class="keyword">></span>(<a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#a5f66204a0ff5b27eed243afddecb0093">m_speciesIndexMap</a>.size())) {</div>
|
||||
<div class="line"><a id="l00339" name="l00339"></a><span class="lineno"> 339</span> LOG_ERROR(<a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193">m_logger</a>, <span class="stringliteral">"Culled index {} is out of bounds for species index map of size {}."</span>, culledSpeciesIndex, <a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#a5f66204a0ff5b27eed243afddecb0093">m_speciesIndexMap</a>.size());</div>
|
||||
<div class="line"><a id="l00340" name="l00340"></a><span class="lineno"> 340</span> <a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193">m_logger</a>->flush_log();</div>
|
||||
<div class="line"><a id="l00341" name="l00341"></a><span class="lineno"> 341</span> <span class="keywordflow">throw</span> std::out_of_range(<span class="stringliteral">"Culled index "</span> + std::to_string(culledSpeciesIndex) + <span class="stringliteral">" is out of bounds for species index map of size "</span> + std::to_string(<a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#a5f66204a0ff5b27eed243afddecb0093">m_speciesIndexMap</a>.size()) + <span class="stringliteral">"."</span>);</div>
|
||||
<div class="line"><a id="l00342" name="l00342"></a><span class="lineno"> 342</span> }</div>
|
||||
<div class="line"><a id="l00343" name="l00343"></a><span class="lineno"> 343</span> <span class="keywordflow">return</span> <a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#a5f66204a0ff5b27eed243afddecb0093">m_speciesIndexMap</a>[culledSpeciesIndex];</div>
|
||||
<div class="line"><a id="l00344" name="l00344"></a><span class="lineno"> 344</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00345" name="l00345"></a><span class="lineno"> 345</span> </div>
|
||||
<div class="foldopen" id="foldopen00346" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00346" name="l00346"></a><span class="lineno"><a class="line" href="classgridfire_1_1_adaptive_engine_view.html#a91e742642d8a8d9ec0620779927e5101"> 346</a></span> <span class="keywordtype">size_t</span> <a class="code hl_function" href="classgridfire_1_1_adaptive_engine_view.html#a91e742642d8a8d9ec0620779927e5101">AdaptiveEngineView::mapCulledToFullReactionIndex</a>(<span class="keywordtype">size_t</span> culledReactionIndex)<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00347" name="l00347"></a><span class="lineno"> 347</span> <span class="keywordflow">if</span> (culledReactionIndex < 0 || culledReactionIndex >= <span class="keyword">static_cast<</span><span class="keywordtype">int</span><span class="keyword">></span>(<a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#a21c6e33bbf8c18fd5b5eaabb469054de">m_reactionIndexMap</a>.size())) {</div>
|
||||
<div class="line"><a id="l00348" name="l00348"></a><span class="lineno"> 348</span> LOG_ERROR(<a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193">m_logger</a>, <span class="stringliteral">"Culled index {} is out of bounds for reaction index map of size {}."</span>, culledReactionIndex, <a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#a21c6e33bbf8c18fd5b5eaabb469054de">m_reactionIndexMap</a>.size());</div>
|
||||
<div class="line"><a id="l00349" name="l00349"></a><span class="lineno"> 349</span> <a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193">m_logger</a>->flush_log();</div>
|
||||
<div class="line"><a id="l00350" name="l00350"></a><span class="lineno"> 350</span> <span class="keywordflow">throw</span> std::out_of_range(<span class="stringliteral">"Culled index "</span> + std::to_string(culledReactionIndex) + <span class="stringliteral">" is out of bounds for reaction index map of size "</span> + std::to_string(<a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#a21c6e33bbf8c18fd5b5eaabb469054de">m_reactionIndexMap</a>.size()) + <span class="stringliteral">"."</span>);</div>
|
||||
<div class="line"><a id="l00351" name="l00351"></a><span class="lineno"> 351</span> }</div>
|
||||
<div class="line"><a id="l00352" name="l00352"></a><span class="lineno"> 352</span> <span class="keywordflow">return</span> <a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#a21c6e33bbf8c18fd5b5eaabb469054de">m_reactionIndexMap</a>[culledReactionIndex];</div>
|
||||
<div class="line"><a id="l00353" name="l00353"></a><span class="lineno"> 353</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00354" name="l00354"></a><span class="lineno"> 354</span> </div>
|
||||
<div class="foldopen" id="foldopen00355" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00355" name="l00355"></a><span class="lineno"><a class="line" href="classgridfire_1_1_adaptive_engine_view.html#aedc0dedb51c81e03f253cc409a5d5c40"> 355</a></span> <span class="keywordtype">void</span> <a class="code hl_function" href="classgridfire_1_1_adaptive_engine_view.html#aedc0dedb51c81e03f253cc409a5d5c40">AdaptiveEngineView::validateState</a>()<span class="keyword"> const </span>{</div>
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<div class="line"><a id="l00356" name="l00356"></a><span class="lineno"> 356</span> <span class="keywordflow">if</span> (<a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#a63580db57e0f48f508906a11ccfd465e">m_isStale</a>) {</div>
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<div class="line"><a id="l00357" name="l00357"></a><span class="lineno"> 357</span> LOG_ERROR(<a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193">m_logger</a>, <span class="stringliteral">"AdaptiveEngineView is stale. Please call update() before calculating RHS and energy."</span>);</div>
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||||
<div class="line"><a id="l00358" name="l00358"></a><span class="lineno"> 358</span> <a class="code hl_variable" href="classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193">m_logger</a>->flush_log();</div>
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||||
<div class="line"><a id="l00359" name="l00359"></a><span class="lineno"> 359</span> <span class="keywordflow">throw</span> std::runtime_error(<span class="stringliteral">"AdaptiveEngineView is stale. Please call update() before calculating RHS and energy."</span>);</div>
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<div class="line"><a id="l00360" name="l00360"></a><span class="lineno"> 360</span> }</div>
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<div class="line"><a id="l00361" name="l00361"></a><span class="lineno"> 361</span> }</div>
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</div>
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<div class="line"><a id="l00362" name="l00362"></a><span class="lineno"> 362</span>}</div>
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<div class="line"><a id="l00363" name="l00363"></a><span class="lineno"> 363</span> </div>
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<div class="ttc" id="aclassgridfire_1_1_adaptive_engine_view_html_a048d4b1d41ecb4125a558d1b9ed7cb31"><div class="ttname"><a href="classgridfire_1_1_adaptive_engine_view.html#a048d4b1d41ecb4125a558d1b9ed7cb31">gridfire::AdaptiveEngineView::calculateMolarReactionFlow</a></div><div class="ttdeci">double calculateMolarReactionFlow(const reaction::Reaction &reaction, const std::vector< double > &Y_culled, double T9, double rho) const override</div><div class="ttdoc">Calculates the molar reaction flow for a given reaction in the active network.</div><div class="ttdef"><b>Definition</b> <a href="#l00278">engine_adaptive.cpp:278</a></div></div>
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<div class="ttc" id="aclassgridfire_1_1_adaptive_engine_view_html_a12cc2f352678fba9688363ba1876ab9c"><div class="ttname"><a href="classgridfire_1_1_adaptive_engine_view.html#a12cc2f352678fba9688363ba1876ab9c">gridfire::AdaptiveEngineView::getNetworkReactions</a></div><div class="ttdeci">const reaction::LogicalReactionSet & getNetworkReactions() const override</div><div class="ttdoc">Gets the set of active logical reactions in the network.</div><div class="ttdef"><b>Definition</b> <a href="#l00295">engine_adaptive.cpp:295</a></div></div>
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<div class="ttc" id="aclassgridfire_1_1_adaptive_engine_view_html_a14171a9ccc45a63996a967c72983de30"><div class="ttname"><a href="classgridfire_1_1_adaptive_engine_view.html#a14171a9ccc45a63996a967c72983de30">gridfire::AdaptiveEngineView::m_config</a></div><div class="ttdeci">Config & m_config</div><div class="ttdef"><b>Definition</b> <a href="engine__adaptive_8h_source.html#l00228">engine_adaptive.h:228</a></div></div>
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<div class="ttc" id="aclassgridfire_1_1_adaptive_engine_view_html_a19fc7e02e216b797aa643fa35e429800"><div class="ttname"><a href="classgridfire_1_1_adaptive_engine_view.html#a19fc7e02e216b797aa643fa35e429800">gridfire::AdaptiveEngineView::m_activeReactions</a></div><div class="ttdeci">reaction::LogicalReactionSet m_activeReactions</div><div class="ttdef"><b>Definition</b> <a href="engine__adaptive_8h_source.html#l00234">engine_adaptive.h:234</a></div></div>
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<div class="ttc" id="aclassgridfire_1_1_adaptive_engine_view_html_a21c6e33bbf8c18fd5b5eaabb469054de"><div class="ttname"><a href="classgridfire_1_1_adaptive_engine_view.html#a21c6e33bbf8c18fd5b5eaabb469054de">gridfire::AdaptiveEngineView::m_reactionIndexMap</a></div><div class="ttdeci">std::vector< size_t > m_reactionIndexMap</div><div class="ttdef"><b>Definition</b> <a href="engine__adaptive_8h_source.html#l00237">engine_adaptive.h:237</a></div></div>
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<div class="ttc" id="aclassgridfire_1_1_adaptive_engine_view_html_a231193a61ba5a31e8eb92b0d4ce69111"><div class="ttname"><a href="classgridfire_1_1_adaptive_engine_view.html#a231193a61ba5a31e8eb92b0d4ce69111">gridfire::AdaptiveEngineView::generateStoichiometryMatrix</a></div><div class="ttdeci">void generateStoichiometryMatrix() override</div><div class="ttdoc">Generates the stoichiometry matrix for the active reactions and species.</div><div class="ttdef"><b>Definition</b> <a href="#l00263">engine_adaptive.cpp:263</a></div></div>
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<div class="ttc" id="aclassgridfire_1_1_adaptive_engine_view_html_a256d14a333f9401039b826cc889761a8"><div class="ttname"><a href="classgridfire_1_1_adaptive_engine_view.html#a256d14a333f9401039b826cc889761a8">gridfire::AdaptiveEngineView::mapCulledToFullSpeciesIndex</a></div><div class="ttdeci">size_t mapCulledToFullSpeciesIndex(size_t culledSpeciesIndex) const</div><div class="ttdoc">Maps a culled species index to a full species index.</div><div class="ttdef"><b>Definition</b> <a href="#l00337">engine_adaptive.cpp:337</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_adaptive_engine_view_html_a3d9d8e862d1c2f0a8ba460c57f6a7f44"><div class="ttname"><a href="classgridfire_1_1_adaptive_engine_view.html#a3d9d8e862d1c2f0a8ba460c57f6a7f44">gridfire::AdaptiveEngineView::mapFullToCulled</a></div><div class="ttdeci">std::vector< double > mapFullToCulled(const std::vector< double > &full) const</div><div class="ttdoc">Maps a vector of full abundances to a vector of culled abundances.</div><div class="ttdef"><b>Definition</b> <a href="#l00328">engine_adaptive.cpp:328</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_adaptive_engine_view_html_a44c4fb7568ddbb20a08f328c2fbf1fdf"><div class="ttname"><a href="classgridfire_1_1_adaptive_engine_view.html#a44c4fb7568ddbb20a08f328c2fbf1fdf">gridfire::AdaptiveEngineView::update</a></div><div class="ttdeci">void update(const NetIn &netIn)</div><div class="ttdoc">Updates the active species and reactions based on the current conditions.</div><div class="ttdef"><b>Definition</b> <a href="#l00085">engine_adaptive.cpp:85</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_adaptive_engine_view_html_a4710d218c8a0fd161e994ecd60b48e58"><div class="ttname"><a href="classgridfire_1_1_adaptive_engine_view.html#a4710d218c8a0fd161e994ecd60b48e58">gridfire::AdaptiveEngineView::getJacobianMatrixEntry</a></div><div class="ttdeci">double getJacobianMatrixEntry(const int i_culled, const int j_culled) const override</div><div class="ttdoc">Gets an entry from the Jacobian matrix for the active species.</div><div class="ttdef"><b>Definition</b> <a href="#l00252">engine_adaptive.cpp:252</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_adaptive_engine_view_html_a4d38b46be9f25c7afe7ddd2b284253f8"><div class="ttname"><a href="classgridfire_1_1_adaptive_engine_view.html#a4d38b46be9f25c7afe7ddd2b284253f8">gridfire::AdaptiveEngineView::m_baseEngine</a></div><div class="ttdeci">DynamicEngine & m_baseEngine</div><div class="ttdef"><b>Definition</b> <a href="engine__adaptive_8h_source.html#l00231">engine_adaptive.h:231</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_adaptive_engine_view_html_a5f66204a0ff5b27eed243afddecb0093"><div class="ttname"><a href="classgridfire_1_1_adaptive_engine_view.html#a5f66204a0ff5b27eed243afddecb0093">gridfire::AdaptiveEngineView::m_speciesIndexMap</a></div><div class="ttdeci">std::vector< size_t > m_speciesIndexMap</div><div class="ttdef"><b>Definition</b> <a href="engine__adaptive_8h_source.html#l00236">engine_adaptive.h:236</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_adaptive_engine_view_html_a63580db57e0f48f508906a11ccfd465e"><div class="ttname"><a href="classgridfire_1_1_adaptive_engine_view.html#a63580db57e0f48f508906a11ccfd465e">gridfire::AdaptiveEngineView::m_isStale</a></div><div class="ttdeci">bool m_isStale</div><div class="ttdef"><b>Definition</b> <a href="engine__adaptive_8h_source.html#l00239">engine_adaptive.h:239</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_adaptive_engine_view_html_a67b4ea8cad115394bb4a42cc39d696f9"><div class="ttname"><a href="classgridfire_1_1_adaptive_engine_view.html#a67b4ea8cad115394bb4a42cc39d696f9">gridfire::AdaptiveEngineView::getStoichiometryMatrixEntry</a></div><div class="ttdeci">int getStoichiometryMatrixEntry(const int speciesIndex_culled, const int reactionIndex_culled) const override</div><div class="ttdoc">Gets an entry from the stoichiometry matrix for the active species and reactions.</div><div class="ttdef"><b>Definition</b> <a href="#l00268">engine_adaptive.cpp:268</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_adaptive_engine_view_html_a68695f056b660e91285b7e5a931612e1"><div class="ttname"><a href="classgridfire_1_1_adaptive_engine_view.html#a68695f056b660e91285b7e5a931612e1">gridfire::AdaptiveEngineView::mapCulledToFull</a></div><div class="ttdeci">std::vector< double > mapCulledToFull(const std::vector< double > &culled) const</div><div class="ttdoc">Maps a vector of culled abundances to a vector of full abundances.</div><div class="ttdef"><b>Definition</b> <a href="#l00319">engine_adaptive.cpp:319</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_adaptive_engine_view_html_a7b276b7210be588263395bdb0497fc6d"><div class="ttname"><a href="classgridfire_1_1_adaptive_engine_view.html#a7b276b7210be588263395bdb0497fc6d">gridfire::AdaptiveEngineView::calculateRHSAndEnergy</a></div><div class="ttdeci">StepDerivatives< double > calculateRHSAndEnergy(const std::vector< double > &Y_culled, const double T9, const double rho) const override</div><div class="ttdoc">Calculates the right-hand side (dY/dt) and energy generation for the active species.</div><div class="ttdef"><b>Definition</b> <a href="#l00223">engine_adaptive.cpp:223</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_adaptive_engine_view_html_a89614f4a48f60c4170a0197f45303e7c"><div class="ttname"><a href="classgridfire_1_1_adaptive_engine_view.html#a89614f4a48f60c4170a0197f45303e7c">gridfire::AdaptiveEngineView::constructReactionIndexMap</a></div><div class="ttdeci">std::vector< size_t > constructReactionIndexMap() const</div><div class="ttdoc">Constructs the reaction index map.</div><div class="ttdef"><b>Definition</b> <a href="#l00053">engine_adaptive.cpp:53</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_adaptive_engine_view_html_a896d29325b4233e83d9298850b617a2d"><div class="ttname"><a href="classgridfire_1_1_adaptive_engine_view.html#a896d29325b4233e83d9298850b617a2d">gridfire::AdaptiveEngineView::constructSpeciesIndexMap</a></div><div class="ttdeci">std::vector< size_t > constructSpeciesIndexMap() const</div><div class="ttdoc">Constructs the species index map.</div><div class="ttdef"><b>Definition</b> <a href="#l00024">engine_adaptive.cpp:24</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_adaptive_engine_view_html_a91e742642d8a8d9ec0620779927e5101"><div class="ttname"><a href="classgridfire_1_1_adaptive_engine_view.html#a91e742642d8a8d9ec0620779927e5101">gridfire::AdaptiveEngineView::mapCulledToFullReactionIndex</a></div><div class="ttdeci">size_t mapCulledToFullReactionIndex(size_t culledReactionIndex) const</div><div class="ttdoc">Maps a culled reaction index to a full reaction index.</div><div class="ttdef"><b>Definition</b> <a href="#l00346">engine_adaptive.cpp:346</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_adaptive_engine_view_html_a93b38d0fdc4647f6f7340172dae17872"><div class="ttname"><a href="classgridfire_1_1_adaptive_engine_view.html#a93b38d0fdc4647f6f7340172dae17872">gridfire::AdaptiveEngineView::getSpeciesTimescales</a></div><div class="ttdeci">std::unordered_map< fourdst::atomic::Species, double > getSpeciesTimescales(const std::vector< double > &Y_culled, double T9, double rho) const override</div><div class="ttdoc">Computes timescales for all active species in the network.</div><div class="ttdef"><b>Definition</b> <a href="#l00299">engine_adaptive.cpp:299</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_adaptive_engine_view_html_ac5bdbe46f87d38d9f23ece5743dcd193"><div class="ttname"><a href="classgridfire_1_1_adaptive_engine_view.html#ac5bdbe46f87d38d9f23ece5743dcd193">gridfire::AdaptiveEngineView::m_logger</a></div><div class="ttdeci">quill::Logger * m_logger</div><div class="ttdef"><b>Definition</b> <a href="engine__adaptive_8h_source.html#l00229">engine_adaptive.h:229</a></div></div>
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||||
<div class="ttc" id="aclassgridfire_1_1_adaptive_engine_view_html_ac83a8efe25c0e5b9bf7756ac3a500bb1"><div class="ttname"><a href="classgridfire_1_1_adaptive_engine_view.html#ac83a8efe25c0e5b9bf7756ac3a500bb1">gridfire::AdaptiveEngineView::getNetworkSpecies</a></div><div class="ttdeci">const std::vector< fourdst::atomic::Species > & getNetworkSpecies() const override</div><div class="ttdoc">Gets the list of active species in the network.</div><div class="ttdef"><b>Definition</b> <a href="#l00219">engine_adaptive.cpp:219</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_adaptive_engine_view_html_ac9aab6f60e80a9228b2b19b1b10449ef"><div class="ttname"><a href="classgridfire_1_1_adaptive_engine_view.html#ac9aab6f60e80a9228b2b19b1b10449ef">gridfire::AdaptiveEngineView::generateJacobianMatrix</a></div><div class="ttdeci">void generateJacobianMatrix(const std::vector< double > &Y_culled, const double T9, const double rho) override</div><div class="ttdoc">Generates the Jacobian matrix for the active species.</div><div class="ttdef"><b>Definition</b> <a href="#l00241">engine_adaptive.cpp:241</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_adaptive_engine_view_html_ad599363cdd457e72e2e2937b0222c455"><div class="ttname"><a href="classgridfire_1_1_adaptive_engine_view.html#ad599363cdd457e72e2e2937b0222c455">gridfire::AdaptiveEngineView::AdaptiveEngineView</a></div><div class="ttdeci">AdaptiveEngineView(DynamicEngine &baseEngine)</div><div class="ttdoc">Constructs an AdaptiveEngineView.</div><div class="ttdef"><b>Definition</b> <a href="#l00013">engine_adaptive.cpp:13</a></div></div>
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||||
<div class="ttc" id="aclassgridfire_1_1_adaptive_engine_view_html_aedc0dedb51c81e03f253cc409a5d5c40"><div class="ttname"><a href="classgridfire_1_1_adaptive_engine_view.html#aedc0dedb51c81e03f253cc409a5d5c40">gridfire::AdaptiveEngineView::validateState</a></div><div class="ttdeci">void validateState() const</div><div class="ttdoc">Validates that the AdaptiveEngineView is not stale.</div><div class="ttdef"><b>Definition</b> <a href="#l00355">engine_adaptive.cpp:355</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_adaptive_engine_view_html_af4bc9fc6e4afcd6a53c49ca6e2a95940"><div class="ttname"><a href="classgridfire_1_1_adaptive_engine_view.html#af4bc9fc6e4afcd6a53c49ca6e2a95940">gridfire::AdaptiveEngineView::m_activeSpecies</a></div><div class="ttdeci">std::vector< fourdst::atomic::Species > m_activeSpecies</div><div class="ttdef"><b>Definition</b> <a href="engine__adaptive_8h_source.html#l00233">engine_adaptive.h:233</a></div></div>
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||||
<div class="ttc" id="aclassgridfire_1_1_dynamic_engine_html"><div class="ttname"><a href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></div><div class="ttdoc">Abstract class for engines supporting Jacobian and stoichiometry operations.</div><div class="ttdef"><b>Definition</b> <a href="engine__abstract_8h_source.html#l00118">engine_abstract.h:118</a></div></div>
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<div class="ttc" id="aclassgridfire_1_1reaction_1_1_logical_reaction_set_html"><div class="ttname"><a href="classgridfire_1_1reaction_1_1_logical_reaction_set.html">gridfire::reaction::LogicalReactionSet</a></div><div class="ttdoc">A collection of LogicalReaction objects.</div><div class="ttdef"><b>Definition</b> <a href="reaction_8h_source.html#l00554">reaction.h:554</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1reaction_1_1_reaction_html"><div class="ttname"><a href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></div><div class="ttdoc">Represents a single nuclear reaction from a specific data source.</div><div class="ttdef"><b>Definition</b> <a href="reaction_8h_source.html#l00071">reaction.h:71</a></div></div>
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||||
<div class="ttc" id="aengine__adaptive_8h_html"><div class="ttname"><a href="engine__adaptive_8h.html">engine_adaptive.h</a></div></div>
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||||
<div class="ttc" id="anamespacegridfire_1_1reaction_html"><div class="ttname"><a href="namespacegridfire_1_1reaction.html">gridfire::reaction</a></div><div class="ttdef"><b>Definition</b> <a href="reaction_8h_source.html#l00024">reaction.h:24</a></div></div>
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||||
<div class="ttc" id="anamespacegridfire_html"><div class="ttname"><a href="namespacegridfire.html">gridfire</a></div><div class="ttdef"><b>Definition</b> <a href="engine__abstract_8h_source.html#l00021">engine_abstract.h:21</a></div></div>
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<div class="ttc" id="anetwork_8h_html"><div class="ttname"><a href="network_8h.html">network.h</a></div></div>
|
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<div class="ttc" id="astructgridfire_1_1_net_in_html"><div class="ttname"><a href="structgridfire_1_1_net_in.html">gridfire::NetIn</a></div><div class="ttdef"><b>Definition</b> <a href="network_8h_source.html#l00053">network.h:53</a></div></div>
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||||
<div class="ttc" id="astructgridfire_1_1_net_in_html_a06f0dff9f8927b7cf2da3004c8fa1577"><div class="ttname"><a href="structgridfire_1_1_net_in.html#a06f0dff9f8927b7cf2da3004c8fa1577">gridfire::NetIn::density</a></div><div class="ttdeci">double density</div><div class="ttdoc">Density in g/cm^3.</div><div class="ttdef"><b>Definition</b> <a href="network_8h_source.html#l00058">network.h:58</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1_net_in_html_a13058f4929e72c1187abbebcddb8aed1"><div class="ttname"><a href="structgridfire_1_1_net_in.html#a13058f4929e72c1187abbebcddb8aed1">gridfire::NetIn::composition</a></div><div class="ttdeci">fourdst::composition::Composition composition</div><div class="ttdoc">Composition of the network.</div><div class="ttdef"><b>Definition</b> <a href="network_8h_source.html#l00054">network.h:54</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1_net_in_html_a5be0f5195a5cd1dd177b9fc5ab83a7be"><div class="ttname"><a href="structgridfire_1_1_net_in.html#a5be0f5195a5cd1dd177b9fc5ab83a7be">gridfire::NetIn::temperature</a></div><div class="ttdeci">double temperature</div><div class="ttdoc">Temperature in Kelvin.</div><div class="ttdef"><b>Definition</b> <a href="network_8h_source.html#l00057">network.h:57</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1_step_derivatives_html"><div class="ttname"><a href="structgridfire_1_1_step_derivatives.html">gridfire::StepDerivatives</a></div><div class="ttdoc">Structure holding derivatives and energy generation for a network step.</div><div class="ttdef"><b>Definition</b> <a href="engine__abstract_8h_source.html#l00050">engine_abstract.h:50</a></div></div>
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||||
<div class="ttc" id="astructgridfire_1_1_step_derivatives_html_ab4aeb41be952c7b5844e1ee81fef9008"><div class="ttname"><a href="structgridfire_1_1_step_derivatives.html#ab4aeb41be952c7b5844e1ee81fef9008">gridfire::StepDerivatives::nuclearEnergyGenerationRate</a></div><div class="ttdeci">T nuclearEnergyGenerationRate</div><div class="ttdoc">Specific energy generation rate (e.g., erg/g/s).</div><div class="ttdef"><b>Definition</b> <a href="engine__abstract_8h_source.html#l00052">engine_abstract.h:52</a></div></div>
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||||
<div class="ttc" id="astructgridfire_1_1_step_derivatives_html_ae0de268b86c2404379409c4feae0b34d"><div class="ttname"><a href="structgridfire_1_1_step_derivatives.html#ae0de268b86c2404379409c4feae0b34d">gridfire::StepDerivatives::dydt</a></div><div class="ttdeci">std::vector< T > dydt</div><div class="ttdoc">Derivatives of abundances (dY/dt for each species).</div><div class="ttdef"><b>Definition</b> <a href="engine__abstract_8h_source.html#l00051">engine_abstract.h:51</a></div></div>
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