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feat(GridFire): added weak electron screening

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This commit is contained in:
Emily Boudreaux
2025-07-01 11:40:03 -04:00
parent 40b28477ed
commit 0c16e81e98
26 changed files with 1408 additions and 444 deletions
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34
src/network/include/gridfire/engine/views/engine_defined.h
View File

@@ -1,7 +1,9 @@
#pragma once
#include "engine_view_abstract.h"
#include "../engine_abstract.h"
#include "gridfire/engine/views/engine_view_abstract.h"
#include "gridfire/engine/engine_abstract.h"
#include "gridfire/io/network_file.h"
#include "gridfire/network.h"
#include "fourdst/config/config.h"
#include "fourdst/logging/logging.h"
@@ -13,7 +15,11 @@
namespace gridfire{
class FileDefinedEngineView final: public DynamicEngine, public EngineView<DynamicEngine> {
public:
explicit FileDefinedEngineView(DynamicEngine& baseEngine, const std::string& fileName);
explicit FileDefinedEngineView(
DynamicEngine& baseEngine,
const std::string& fileName,
const io::NetworkFileParser& parser
);
// --- EngineView Interface ---
const DynamicEngine& getBaseEngine() const override;
@@ -53,6 +59,14 @@ namespace gridfire{
const double T9,
const double rho
) const override;
void update(const NetIn &netIn) override;
void setNetworkFile(const std::string& fileName);
void setScreeningModel(screening::ScreeningType model) override;
[[nodiscard]] screening::ScreeningType getScreeningModel() const override;
private:
using Config = fourdst::config::Config;
using LogManager = fourdst::logging::LogManager;
@@ -60,12 +74,17 @@ namespace gridfire{
quill::Logger* m_logger = LogManager::getInstance().getLogger("log");
DynamicEngine& m_baseEngine;
std::string m_fileName; ///< Name of the file defining the reaction set considered by the engine view.
const io::NetworkFileParser& m_parser; ///< Parser for the network file.
std::vector<fourdst::atomic::Species> m_activeSpecies; ///< Active species in the defined engine.
reaction::LogicalReactionSet m_activeReactions; ///< Active reactions in the defined engine.
std::vector<size_t> m_speciesIndexMap; ///< Maps indices of active species to indices in the full network.
std::vector<size_t> m_reactionIndexMap; ///< Maps indices of active reactions to indices in the full network.
bool m_isStale = true;
private:
void buildFromFile(const std::string& fileName);
@@ -100,7 +119,7 @@ namespace gridfire{
* @return A vector of abundances for the full network, with the abundances of the active
* species copied from the culled vector.
*/
std::vector<double> mapCulledToFull(const std::vector<double>& culled) const;
std::vector<double> mapViewToFull(const std::vector<double>& culled) const;
/**
* @brief Maps a vector of full abundances to a vector of culled abundances.
@@ -109,7 +128,7 @@ namespace gridfire{
* @return A vector of abundances for the active species, with the abundances of the active
* species copied from the full vector.
*/
std::vector<double> mapFullToCulled(const std::vector<double>& full) const;
std::vector<double> mapFullToView(const std::vector<double>& full) const;
/**
* @brief Maps a culled species index to a full species index.
@@ -119,7 +138,7 @@ namespace gridfire{
*
* @throws std::out_of_range If the culled index is out of bounds for the species index map.
*/
size_t mapCulledToFullSpeciesIndex(size_t culledSpeciesIndex) const;
size_t mapViewToFullSpeciesIndex(size_t culledSpeciesIndex) const;
/**
* @brief Maps a culled reaction index to a full reaction index.
@@ -129,7 +148,8 @@ namespace gridfire{
*
* @throws std::out_of_range If the culled index is out of bounds for the reaction index map.
*/
size_t mapCulledToFullReactionIndex(size_t culledReactionIndex) const;
size_t mapViewToFullReactionIndex(size_t culledReactionIndex) const;
void validateNetworkState() const;
};
}