docs(docs): rebuilt
This commit is contained in:
515
docs/html/engine__defined_8cpp_source.html
Normal file
515
docs/html/engine__defined_8cpp_source.html
Normal file
@@ -0,0 +1,515 @@
|
||||
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
|
||||
<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
|
||||
<head>
|
||||
<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
|
||||
<meta http-equiv="X-UA-Compatible" content="IE=11"/>
|
||||
<meta name="generator" content="Doxygen 1.13.2"/>
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1"/>
|
||||
<title>GridFire: src/network/lib/engine/views/engine_defined.cpp Source File</title>
|
||||
<link href="tabs.css" rel="stylesheet" type="text/css"/>
|
||||
<script type="text/javascript" src="jquery.js"></script>
|
||||
<script type="text/javascript" src="dynsections.js"></script>
|
||||
<script type="text/javascript" src="clipboard.js"></script>
|
||||
<link href="navtree.css" rel="stylesheet" type="text/css"/>
|
||||
<script type="text/javascript" src="navtreedata.js"></script>
|
||||
<script type="text/javascript" src="navtree.js"></script>
|
||||
<script type="text/javascript" src="resize.js"></script>
|
||||
<script type="text/javascript" src="cookie.js"></script>
|
||||
<link href="search/search.css" rel="stylesheet" type="text/css"/>
|
||||
<script type="text/javascript" src="search/searchdata.js"></script>
|
||||
<script type="text/javascript" src="search/search.js"></script>
|
||||
<link href="doxygen.css" rel="stylesheet" type="text/css" />
|
||||
<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
|
||||
<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
|
||||
</head>
|
||||
<body>
|
||||
<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
|
||||
<div id="titlearea">
|
||||
<table cellspacing="0" cellpadding="0">
|
||||
<tbody>
|
||||
<tr id="projectrow">
|
||||
<td id="projectalign">
|
||||
<div id="projectname">GridFire<span id="projectnumber"> 0.0.1a</span>
|
||||
</div>
|
||||
<div id="projectbrief">General Purpose Nuclear Network</div>
|
||||
</td>
|
||||
</tr>
|
||||
</tbody>
|
||||
</table>
|
||||
</div>
|
||||
<!-- end header part -->
|
||||
<!-- Generated by Doxygen 1.13.2 -->
|
||||
<script type="text/javascript">
|
||||
/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&dn=expat.txt MIT */
|
||||
var searchBox = new SearchBox("searchBox", "search/",'.html');
|
||||
/* @license-end */
|
||||
</script>
|
||||
<script type="text/javascript">
|
||||
/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&dn=expat.txt MIT */
|
||||
$(function() { codefold.init(0); });
|
||||
/* @license-end */
|
||||
</script>
|
||||
<script type="text/javascript" src="menudata.js"></script>
|
||||
<script type="text/javascript" src="menu.js"></script>
|
||||
<script type="text/javascript">
|
||||
/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&dn=expat.txt MIT */
|
||||
$(function() {
|
||||
initMenu('',true,false,'search.php','Search',true);
|
||||
$(function() { init_search(); });
|
||||
});
|
||||
/* @license-end */
|
||||
</script>
|
||||
<div id="main-nav"></div>
|
||||
</div><!-- top -->
|
||||
<div id="side-nav" class="ui-resizable side-nav-resizable">
|
||||
<div id="nav-tree">
|
||||
<div id="nav-tree-contents">
|
||||
<div id="nav-sync" class="sync"></div>
|
||||
</div>
|
||||
</div>
|
||||
<div id="splitbar" style="-moz-user-select:none;"
|
||||
class="ui-resizable-handle">
|
||||
</div>
|
||||
</div>
|
||||
<script type="text/javascript">
|
||||
/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&dn=expat.txt MIT */
|
||||
$(function(){initNavTree('engine__defined_8cpp_source.html',''); initResizable(true); });
|
||||
/* @license-end */
|
||||
</script>
|
||||
<div id="doc-content">
|
||||
<!-- window showing the filter options -->
|
||||
<div id="MSearchSelectWindow"
|
||||
onmouseover="return searchBox.OnSearchSelectShow()"
|
||||
onmouseout="return searchBox.OnSearchSelectHide()"
|
||||
onkeydown="return searchBox.OnSearchSelectKey(event)">
|
||||
</div>
|
||||
|
||||
<!-- iframe showing the search results (closed by default) -->
|
||||
<div id="MSearchResultsWindow">
|
||||
<div id="MSearchResults">
|
||||
<div class="SRPage">
|
||||
<div id="SRIndex">
|
||||
<div id="SRResults"></div>
|
||||
<div class="SRStatus" id="Loading">Loading...</div>
|
||||
<div class="SRStatus" id="Searching">Searching...</div>
|
||||
<div class="SRStatus" id="NoMatches">No Matches</div>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div class="header">
|
||||
<div class="headertitle"><div class="title">engine_defined.cpp</div></div>
|
||||
</div><!--header-->
|
||||
<div class="contents">
|
||||
<a href="engine__defined_8cpp.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a id="l00001" name="l00001"></a><span class="lineno"> 1</span><span class="preprocessor">#include "<a class="code" href="engine__defined_8h.html">gridfire/engine/views/engine_defined.h</a>"</span></div>
|
||||
<div class="line"><a id="l00002" name="l00002"></a><span class="lineno"> 2</span> </div>
|
||||
<div class="line"><a id="l00003" name="l00003"></a><span class="lineno"> 3</span><span class="preprocessor">#include "quill/LogMacros.h"</span></div>
|
||||
<div class="line"><a id="l00004" name="l00004"></a><span class="lineno"> 4</span> </div>
|
||||
<div class="line"><a id="l00005" name="l00005"></a><span class="lineno"> 5</span><span class="keyword">namespace </span><a class="code hl_namespace" href="namespacegridfire.html">gridfire</a> {</div>
|
||||
<div class="line"><a id="l00006" name="l00006"></a><span class="lineno"> 6</span> <span class="keyword">using </span>fourdst::atomic::Species;</div>
|
||||
<div class="line"><a id="l00007" name="l00007"></a><span class="lineno"> 7</span> </div>
|
||||
<div class="foldopen" id="foldopen00008" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00008" name="l00008"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#a8f2f64bab0f516ed2a6fd529912e0acd"> 8</a></span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a8f2f64bab0f516ed2a6fd529912e0acd">FileDefinedEngineView::FileDefinedEngineView</a>(</div>
|
||||
<div class="line"><a id="l00009" name="l00009"></a><span class="lineno"> 9</span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &baseEngine,</div>
|
||||
<div class="line"><a id="l00010" name="l00010"></a><span class="lineno"> 10</span> <span class="keyword">const</span> std::string &fileName,</div>
|
||||
<div class="line"><a id="l00011" name="l00011"></a><span class="lineno"> 11</span> <span class="keyword">const</span> <a class="code hl_class" href="classgridfire_1_1io_1_1_network_file_parser.html">io::NetworkFileParser</a> &parser</div>
|
||||
<div class="line"><a id="l00012" name="l00012"></a><span class="lineno"> 12</span> ):</div>
|
||||
<div class="line"><a id="l00013" name="l00013"></a><span class="lineno"> 13</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ad8454c98fa9a4bb45dc81059bc51fc81">m_baseEngine</a>(baseEngine),</div>
|
||||
<div class="line"><a id="l00014" name="l00014"></a><span class="lineno"> 14</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a1b343998b93955025a589b2b4541e33b">m_fileName</a>(fileName),</div>
|
||||
<div class="line"><a id="l00015" name="l00015"></a><span class="lineno"> 15</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a0a9b07176cb93b54c677b6ce71fda500">m_parser</a>(parser),</div>
|
||||
<div class="line"><a id="l00016" name="l00016"></a><span class="lineno"> 16</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a299a0c61aa4f26029c770013c9feff5e">m_activeSpecies</a>(baseEngine.<a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a8bb583e039b49608272997ed2d3387fa">getNetworkSpecies</a>()),</div>
|
||||
<div class="line"><a id="l00017" name="l00017"></a><span class="lineno"> 17</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ae012da2b1f6169cb13e6075a73353ab2">m_activeReactions</a>(baseEngine.<a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a5bbea17b69cc8f81bc251a04f4435a0c">getNetworkReactions</a>()) {</div>
|
||||
<div class="line"><a id="l00018" name="l00018"></a><span class="lineno"> 18</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a3b5162b7be35405285ef9f825ec2663b">buildFromFile</a>(fileName);</div>
|
||||
<div class="line"><a id="l00019" name="l00019"></a><span class="lineno"> 19</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00020" name="l00020"></a><span class="lineno"> 20</span> </div>
|
||||
<div class="foldopen" id="foldopen00021" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00021" name="l00021"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#a4c8b273c5cb3d470567c5691b68493a3"> 21</a></span> <span class="keyword">const</span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> & <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a4c8b273c5cb3d470567c5691b68493a3">FileDefinedEngineView::getBaseEngine</a>()<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00022" name="l00022"></a><span class="lineno"> 22</span> <span class="keywordflow">return</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ad8454c98fa9a4bb45dc81059bc51fc81">m_baseEngine</a>;</div>
|
||||
<div class="line"><a id="l00023" name="l00023"></a><span class="lineno"> 23</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00024" name="l00024"></a><span class="lineno"> 24</span> </div>
|
||||
<div class="foldopen" id="foldopen00025" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00025" name="l00025"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#a8bb583e039b49608272997ed2d3387fa"> 25</a></span> <span class="keyword">const</span> std::vector<Species> & <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a8bb583e039b49608272997ed2d3387fa">FileDefinedEngineView::getNetworkSpecies</a>()<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00026" name="l00026"></a><span class="lineno"> 26</span> <span class="keywordflow">return</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a299a0c61aa4f26029c770013c9feff5e">m_activeSpecies</a>;</div>
|
||||
<div class="line"><a id="l00027" name="l00027"></a><span class="lineno"> 27</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00028" name="l00028"></a><span class="lineno"> 28</span> </div>
|
||||
<div class="foldopen" id="foldopen00029" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00029" name="l00029"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#a2c1d88b06568f9ea4c65e794d012ebfb"> 29</a></span> <a class="code hl_struct" href="structgridfire_1_1_step_derivatives.html">StepDerivatives<double></a> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a2c1d88b06568f9ea4c65e794d012ebfb">FileDefinedEngineView::calculateRHSAndEnergy</a>(</div>
|
||||
<div class="line"><a id="l00030" name="l00030"></a><span class="lineno"> 30</span> <span class="keyword">const</span> std::vector<double> &Y_defined,</div>
|
||||
<div class="line"><a id="l00031" name="l00031"></a><span class="lineno"> 31</span> <span class="keyword">const</span> <span class="keywordtype">double</span> T9,</div>
|
||||
<div class="line"><a id="l00032" name="l00032"></a><span class="lineno"> 32</span> <span class="keyword">const</span> <span class="keywordtype">double</span> rho</div>
|
||||
<div class="line"><a id="l00033" name="l00033"></a><span class="lineno"> 33</span> )<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00034" name="l00034"></a><span class="lineno"> 34</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ae3f99002ab2c56a5bcdec00839f8628f">validateNetworkState</a>();</div>
|
||||
<div class="line"><a id="l00035" name="l00035"></a><span class="lineno"> 35</span> </div>
|
||||
<div class="line"><a id="l00036" name="l00036"></a><span class="lineno"> 36</span> <span class="keyword">const</span> <span class="keyword">auto</span> Y_full = <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ac231044e37e0962f664f8465e1ccb022">mapViewToFull</a>(Y_defined);</div>
|
||||
<div class="line"><a id="l00037" name="l00037"></a><span class="lineno"> 37</span> <span class="keyword">const</span> <span class="keyword">auto</span> [dydt, nuclearEnergyGenerationRate] = <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ad8454c98fa9a4bb45dc81059bc51fc81">m_baseEngine</a>.calculateRHSAndEnergy(Y_full, T9, rho);</div>
|
||||
<div class="line"><a id="l00038" name="l00038"></a><span class="lineno"> 38</span> </div>
|
||||
<div class="line"><a id="l00039" name="l00039"></a><span class="lineno"> 39</span> <a class="code hl_struct" href="structgridfire_1_1_step_derivatives.html">StepDerivatives<double></a> definedResults;</div>
|
||||
<div class="line"><a id="l00040" name="l00040"></a><span class="lineno"> 40</span> definedResults.<a class="code hl_variable" href="structgridfire_1_1_step_derivatives.html#ab4aeb41be952c7b5844e1ee81fef9008">nuclearEnergyGenerationRate</a> = nuclearEnergyGenerationRate;</div>
|
||||
<div class="line"><a id="l00041" name="l00041"></a><span class="lineno"> 41</span> definedResults.<a class="code hl_variable" href="structgridfire_1_1_step_derivatives.html#ae0de268b86c2404379409c4feae0b34d">dydt</a> = <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a97e5ee4651dbe6754678fe96e4702fee">mapFullToView</a>(dydt);</div>
|
||||
<div class="line"><a id="l00042" name="l00042"></a><span class="lineno"> 42</span> <span class="keywordflow">return</span> definedResults;</div>
|
||||
<div class="line"><a id="l00043" name="l00043"></a><span class="lineno"> 43</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00044" name="l00044"></a><span class="lineno"> 44</span> </div>
|
||||
<div class="foldopen" id="foldopen00045" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00045" name="l00045"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#a48b2451f96b8f5511ffc4071519c0810"> 45</a></span> <span class="keywordtype">void</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a48b2451f96b8f5511ffc4071519c0810">FileDefinedEngineView::generateJacobianMatrix</a>(</div>
|
||||
<div class="line"><a id="l00046" name="l00046"></a><span class="lineno"> 46</span> <span class="keyword">const</span> std::vector<double> &Y_defined,</div>
|
||||
<div class="line"><a id="l00047" name="l00047"></a><span class="lineno"> 47</span> <span class="keyword">const</span> <span class="keywordtype">double</span> T9,</div>
|
||||
<div class="line"><a id="l00048" name="l00048"></a><span class="lineno"> 48</span> <span class="keyword">const</span> <span class="keywordtype">double</span> rho</div>
|
||||
<div class="line"><a id="l00049" name="l00049"></a><span class="lineno"> 49</span> ) {</div>
|
||||
<div class="line"><a id="l00050" name="l00050"></a><span class="lineno"> 50</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ae3f99002ab2c56a5bcdec00839f8628f">validateNetworkState</a>();</div>
|
||||
<div class="line"><a id="l00051" name="l00051"></a><span class="lineno"> 51</span> </div>
|
||||
<div class="line"><a id="l00052" name="l00052"></a><span class="lineno"> 52</span> <span class="keyword">const</span> <span class="keyword">auto</span> Y_full = <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ac231044e37e0962f664f8465e1ccb022">mapViewToFull</a>(Y_defined);</div>
|
||||
<div class="line"><a id="l00053" name="l00053"></a><span class="lineno"> 53</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ad8454c98fa9a4bb45dc81059bc51fc81">m_baseEngine</a>.generateJacobianMatrix(Y_full, T9, rho);</div>
|
||||
<div class="line"><a id="l00054" name="l00054"></a><span class="lineno"> 54</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00055" name="l00055"></a><span class="lineno"> 55</span> </div>
|
||||
<div class="foldopen" id="foldopen00056" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00056" name="l00056"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#a0ef8804780d13bbfce0856237bb00470"> 56</a></span> <span class="keywordtype">double</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a0ef8804780d13bbfce0856237bb00470">FileDefinedEngineView::getJacobianMatrixEntry</a>(</div>
|
||||
<div class="line"><a id="l00057" name="l00057"></a><span class="lineno"> 57</span> <span class="keyword">const</span> <span class="keywordtype">int</span> i_defined,</div>
|
||||
<div class="line"><a id="l00058" name="l00058"></a><span class="lineno"> 58</span> <span class="keyword">const</span> <span class="keywordtype">int</span> j_defined</div>
|
||||
<div class="line"><a id="l00059" name="l00059"></a><span class="lineno"> 59</span> )<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00060" name="l00060"></a><span class="lineno"> 60</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ae3f99002ab2c56a5bcdec00839f8628f">validateNetworkState</a>();</div>
|
||||
<div class="line"><a id="l00061" name="l00061"></a><span class="lineno"> 61</span> </div>
|
||||
<div class="line"><a id="l00062" name="l00062"></a><span class="lineno"> 62</span> <span class="keyword">const</span> <span class="keywordtype">size_t</span> i_full = <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a8d2c6b9a33b9c8c172bbd2c2e2e9ffaf">mapViewToFullSpeciesIndex</a>(i_defined);</div>
|
||||
<div class="line"><a id="l00063" name="l00063"></a><span class="lineno"> 63</span> <span class="keyword">const</span> <span class="keywordtype">size_t</span> j_full = <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a8d2c6b9a33b9c8c172bbd2c2e2e9ffaf">mapViewToFullSpeciesIndex</a>(j_defined);</div>
|
||||
<div class="line"><a id="l00064" name="l00064"></a><span class="lineno"> 64</span> </div>
|
||||
<div class="line"><a id="l00065" name="l00065"></a><span class="lineno"> 65</span> <span class="keywordflow">return</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ad8454c98fa9a4bb45dc81059bc51fc81">m_baseEngine</a>.getJacobianMatrixEntry(i_full, j_full);</div>
|
||||
<div class="line"><a id="l00066" name="l00066"></a><span class="lineno"> 66</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00067" name="l00067"></a><span class="lineno"> 67</span> </div>
|
||||
<div class="foldopen" id="foldopen00068" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00068" name="l00068"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#a27a5163157cc15c4cb3b99a5d3564dbd"> 68</a></span> <span class="keywordtype">void</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a27a5163157cc15c4cb3b99a5d3564dbd">FileDefinedEngineView::generateStoichiometryMatrix</a>() {</div>
|
||||
<div class="line"><a id="l00069" name="l00069"></a><span class="lineno"> 69</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ae3f99002ab2c56a5bcdec00839f8628f">validateNetworkState</a>();</div>
|
||||
<div class="line"><a id="l00070" name="l00070"></a><span class="lineno"> 70</span> </div>
|
||||
<div class="line"><a id="l00071" name="l00071"></a><span class="lineno"> 71</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ad8454c98fa9a4bb45dc81059bc51fc81">m_baseEngine</a>.generateStoichiometryMatrix();</div>
|
||||
<div class="line"><a id="l00072" name="l00072"></a><span class="lineno"> 72</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00073" name="l00073"></a><span class="lineno"> 73</span> </div>
|
||||
<div class="foldopen" id="foldopen00074" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00074" name="l00074"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#a9da9224f5c99a5068f3d8cbf066e4693"> 74</a></span> <span class="keywordtype">int</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a9da9224f5c99a5068f3d8cbf066e4693">FileDefinedEngineView::getStoichiometryMatrixEntry</a>(</div>
|
||||
<div class="line"><a id="l00075" name="l00075"></a><span class="lineno"> 75</span> <span class="keyword">const</span> <span class="keywordtype">int</span> speciesIndex_defined,</div>
|
||||
<div class="line"><a id="l00076" name="l00076"></a><span class="lineno"> 76</span> <span class="keyword">const</span> <span class="keywordtype">int</span> reactionIndex_defined</div>
|
||||
<div class="line"><a id="l00077" name="l00077"></a><span class="lineno"> 77</span> )<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00078" name="l00078"></a><span class="lineno"> 78</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ae3f99002ab2c56a5bcdec00839f8628f">validateNetworkState</a>();</div>
|
||||
<div class="line"><a id="l00079" name="l00079"></a><span class="lineno"> 79</span> </div>
|
||||
<div class="line"><a id="l00080" name="l00080"></a><span class="lineno"> 80</span> <span class="keyword">const</span> <span class="keywordtype">size_t</span> i_full = <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a8d2c6b9a33b9c8c172bbd2c2e2e9ffaf">mapViewToFullSpeciesIndex</a>(speciesIndex_defined);</div>
|
||||
<div class="line"><a id="l00081" name="l00081"></a><span class="lineno"> 81</span> <span class="keyword">const</span> <span class="keywordtype">size_t</span> j_full = <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ae7d6f0ff9076d59d1245c047bbd1bdb9">mapViewToFullReactionIndex</a>(reactionIndex_defined);</div>
|
||||
<div class="line"><a id="l00082" name="l00082"></a><span class="lineno"> 82</span> <span class="keywordflow">return</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ad8454c98fa9a4bb45dc81059bc51fc81">m_baseEngine</a>.getStoichiometryMatrixEntry(i_full, j_full);</div>
|
||||
<div class="line"><a id="l00083" name="l00083"></a><span class="lineno"> 83</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00084" name="l00084"></a><span class="lineno"> 84</span> </div>
|
||||
<div class="foldopen" id="foldopen00085" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00085" name="l00085"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#ac371fb66fd0a76a04df204c9dd9a05ef"> 85</a></span> <span class="keywordtype">double</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ac371fb66fd0a76a04df204c9dd9a05ef">FileDefinedEngineView::calculateMolarReactionFlow</a>(</div>
|
||||
<div class="line"><a id="l00086" name="l00086"></a><span class="lineno"> 86</span> <span class="keyword">const</span> <a class="code hl_class" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> &<a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a>,</div>
|
||||
<div class="line"><a id="l00087" name="l00087"></a><span class="lineno"> 87</span> <span class="keyword">const</span> std::vector<double> &Y_defined,</div>
|
||||
<div class="line"><a id="l00088" name="l00088"></a><span class="lineno"> 88</span> <span class="keyword">const</span> <span class="keywordtype">double</span> T9,</div>
|
||||
<div class="line"><a id="l00089" name="l00089"></a><span class="lineno"> 89</span> <span class="keyword">const</span> <span class="keywordtype">double</span> rho</div>
|
||||
<div class="line"><a id="l00090" name="l00090"></a><span class="lineno"> 90</span> )<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00091" name="l00091"></a><span class="lineno"> 91</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ae3f99002ab2c56a5bcdec00839f8628f">validateNetworkState</a>();</div>
|
||||
<div class="line"><a id="l00092" name="l00092"></a><span class="lineno"> 92</span> </div>
|
||||
<div class="line"><a id="l00093" name="l00093"></a><span class="lineno"> 93</span> <span class="keywordflow">if</span> (!<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ae012da2b1f6169cb13e6075a73353ab2">m_activeReactions</a>.contains(<a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a>)) {</div>
|
||||
<div class="line"><a id="l00094" name="l00094"></a><span class="lineno"> 94</span> LOG_ERROR(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a>, <span class="stringliteral">"Reaction '{}' is not part of the active reactions in the file defined engine view."</span>, <a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a>.id());</div>
|
||||
<div class="line"><a id="l00095" name="l00095"></a><span class="lineno"> 95</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a> -> flush_log();</div>
|
||||
<div class="line"><a id="l00096" name="l00096"></a><span class="lineno"> 96</span> <span class="keywordflow">throw</span> std::runtime_error(<span class="stringliteral">"Reaction not found in active reactions: "</span> + std::string(<a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a>.id()));</div>
|
||||
<div class="line"><a id="l00097" name="l00097"></a><span class="lineno"> 97</span> }</div>
|
||||
<div class="line"><a id="l00098" name="l00098"></a><span class="lineno"> 98</span> <span class="keyword">const</span> <span class="keyword">auto</span> Y_full = <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ac231044e37e0962f664f8465e1ccb022">mapViewToFull</a>(Y_defined);</div>
|
||||
<div class="line"><a id="l00099" name="l00099"></a><span class="lineno"> 99</span> <span class="keywordflow">return</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ad8454c98fa9a4bb45dc81059bc51fc81">m_baseEngine</a>.calculateMolarReactionFlow(<a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a>, Y_full, T9, rho);</div>
|
||||
<div class="line"><a id="l00100" name="l00100"></a><span class="lineno"> 100</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00101" name="l00101"></a><span class="lineno"> 101</span> </div>
|
||||
<div class="foldopen" id="foldopen00102" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00102" name="l00102"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#a5bbea17b69cc8f81bc251a04f4435a0c"> 102</a></span> <span class="keyword">const</span> <a class="code hl_typedef" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> & <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a5bbea17b69cc8f81bc251a04f4435a0c">FileDefinedEngineView::getNetworkReactions</a>()<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00103" name="l00103"></a><span class="lineno"> 103</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ae3f99002ab2c56a5bcdec00839f8628f">validateNetworkState</a>();</div>
|
||||
<div class="line"><a id="l00104" name="l00104"></a><span class="lineno"> 104</span> </div>
|
||||
<div class="line"><a id="l00105" name="l00105"></a><span class="lineno"> 105</span> <span class="keywordflow">return</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ae012da2b1f6169cb13e6075a73353ab2">m_activeReactions</a>;</div>
|
||||
<div class="line"><a id="l00106" name="l00106"></a><span class="lineno"> 106</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00107" name="l00107"></a><span class="lineno"> 107</span> </div>
|
||||
<div class="foldopen" id="foldopen00108" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00108" name="l00108"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#ace3c6ea4841318c08695973ab3dcddc6"> 108</a></span> std::unordered_map<Species, double> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ace3c6ea4841318c08695973ab3dcddc6">FileDefinedEngineView::getSpeciesTimescales</a>(</div>
|
||||
<div class="line"><a id="l00109" name="l00109"></a><span class="lineno"> 109</span> <span class="keyword">const</span> std::vector<double> &Y_defined,</div>
|
||||
<div class="line"><a id="l00110" name="l00110"></a><span class="lineno"> 110</span> <span class="keyword">const</span> <span class="keywordtype">double</span> T9,</div>
|
||||
<div class="line"><a id="l00111" name="l00111"></a><span class="lineno"> 111</span> <span class="keyword">const</span> <span class="keywordtype">double</span> rho</div>
|
||||
<div class="line"><a id="l00112" name="l00112"></a><span class="lineno"> 112</span> )<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00113" name="l00113"></a><span class="lineno"> 113</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ae3f99002ab2c56a5bcdec00839f8628f">validateNetworkState</a>();</div>
|
||||
<div class="line"><a id="l00114" name="l00114"></a><span class="lineno"> 114</span> </div>
|
||||
<div class="line"><a id="l00115" name="l00115"></a><span class="lineno"> 115</span> <span class="keyword">const</span> <span class="keyword">auto</span> Y_full = <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ac231044e37e0962f664f8465e1ccb022">mapViewToFull</a>(Y_defined);</div>
|
||||
<div class="line"><a id="l00116" name="l00116"></a><span class="lineno"> 116</span> <span class="keyword">const</span> <span class="keyword">auto</span> fullTimescales = <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ad8454c98fa9a4bb45dc81059bc51fc81">m_baseEngine</a>.getSpeciesTimescales(Y_full, T9, rho);</div>
|
||||
<div class="line"><a id="l00117" name="l00117"></a><span class="lineno"> 117</span> </div>
|
||||
<div class="line"><a id="l00118" name="l00118"></a><span class="lineno"> 118</span> std::unordered_map<Species, double> definedTimescales;</div>
|
||||
<div class="line"><a id="l00119" name="l00119"></a><span class="lineno"> 119</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>& active_species : <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a299a0c61aa4f26029c770013c9feff5e">m_activeSpecies</a>) {</div>
|
||||
<div class="line"><a id="l00120" name="l00120"></a><span class="lineno"> 120</span> <span class="keywordflow">if</span> (fullTimescales.contains(active_species)) {</div>
|
||||
<div class="line"><a id="l00121" name="l00121"></a><span class="lineno"> 121</span> definedTimescales[active_species] = fullTimescales.at(active_species);</div>
|
||||
<div class="line"><a id="l00122" name="l00122"></a><span class="lineno"> 122</span> }</div>
|
||||
<div class="line"><a id="l00123" name="l00123"></a><span class="lineno"> 123</span> }</div>
|
||||
<div class="line"><a id="l00124" name="l00124"></a><span class="lineno"> 124</span> <span class="keywordflow">return</span> definedTimescales;</div>
|
||||
<div class="line"><a id="l00125" name="l00125"></a><span class="lineno"> 125</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00126" name="l00126"></a><span class="lineno"> 126</span> </div>
|
||||
<div class="foldopen" id="foldopen00127" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00127" name="l00127"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#ace3568eadaba69e7357b4386c5ca3eb0"> 127</a></span> <span class="keywordtype">void</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ace3568eadaba69e7357b4386c5ca3eb0">FileDefinedEngineView::update</a>(<span class="keyword">const</span> <a class="code hl_struct" href="structgridfire_1_1_net_in.html">NetIn</a> &netIn) {</div>
|
||||
<div class="line"><a id="l00128" name="l00128"></a><span class="lineno"> 128</span> <span class="keywordflow">if</span> (<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a6e421bc748933be31bed9ff53f12b595">m_isStale</a>) {</div>
|
||||
<div class="line"><a id="l00129" name="l00129"></a><span class="lineno"> 129</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a3b5162b7be35405285ef9f825ec2663b">buildFromFile</a>(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a1b343998b93955025a589b2b4541e33b">m_fileName</a>);</div>
|
||||
<div class="line"><a id="l00130" name="l00130"></a><span class="lineno"> 130</span> }</div>
|
||||
<div class="line"><a id="l00131" name="l00131"></a><span class="lineno"> 131</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00132" name="l00132"></a><span class="lineno"> 132</span> </div>
|
||||
<div class="foldopen" id="foldopen00133" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00133" name="l00133"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#a92f14da849e99d07c1ff1347addb9263"> 133</a></span> <span class="keywordtype">void</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a92f14da849e99d07c1ff1347addb9263">FileDefinedEngineView::setNetworkFile</a>(<span class="keyword">const</span> std::string &fileName) {</div>
|
||||
<div class="line"><a id="l00134" name="l00134"></a><span class="lineno"> 134</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a6e421bc748933be31bed9ff53f12b595">m_isStale</a> = <span class="keyword">true</span>;</div>
|
||||
<div class="line"><a id="l00135" name="l00135"></a><span class="lineno"> 135</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a1b343998b93955025a589b2b4541e33b">m_fileName</a> = fileName;</div>
|
||||
<div class="line"><a id="l00136" name="l00136"></a><span class="lineno"> 136</span> LOG_DEBUG(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a>, <span class="stringliteral">"File '{}' set to '{}'. FileDefinedNetworkView is now stale! You MUST call update() before you use it!"</span>, <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a1b343998b93955025a589b2b4541e33b">m_fileName</a>, fileName);</div>
|
||||
<div class="line"><a id="l00137" name="l00137"></a><span class="lineno"> 137</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00138" name="l00138"></a><span class="lineno"> 138</span> </div>
|
||||
<div class="foldopen" id="foldopen00139" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00139" name="l00139"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#ad96bbee6d3d37b50d9236a975ef704c0"> 139</a></span> <span class="keywordtype">void</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ad96bbee6d3d37b50d9236a975ef704c0">FileDefinedEngineView::setScreeningModel</a>(<span class="keyword">const</span> <a class="code hl_enumeration" href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">screening::ScreeningType</a> model) {</div>
|
||||
<div class="line"><a id="l00140" name="l00140"></a><span class="lineno"> 140</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ad8454c98fa9a4bb45dc81059bc51fc81">m_baseEngine</a>.setScreeningModel(model);</div>
|
||||
<div class="line"><a id="l00141" name="l00141"></a><span class="lineno"> 141</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00142" name="l00142"></a><span class="lineno"> 142</span> </div>
|
||||
<div class="foldopen" id="foldopen00143" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00143" name="l00143"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#adbc50f397445f92b810d80cf329b8626"> 143</a></span> <a class="code hl_enumeration" href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">screening::ScreeningType</a> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#adbc50f397445f92b810d80cf329b8626">FileDefinedEngineView::getScreeningModel</a>()<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00144" name="l00144"></a><span class="lineno"> 144</span> <span class="keywordflow">return</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ad8454c98fa9a4bb45dc81059bc51fc81">m_baseEngine</a>.getScreeningModel();</div>
|
||||
<div class="line"><a id="l00145" name="l00145"></a><span class="lineno"> 145</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00146" name="l00146"></a><span class="lineno"> 146</span> </div>
|
||||
<div class="foldopen" id="foldopen00147" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00147" name="l00147"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#a51ba09ff01fdcac1125d42f276c9a0a7"> 147</a></span> std::vector<size_t> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a51ba09ff01fdcac1125d42f276c9a0a7">FileDefinedEngineView::constructSpeciesIndexMap</a>()<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00148" name="l00148"></a><span class="lineno"> 148</span> LOG_TRACE_L1(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a>, <span class="stringliteral">"Constructing species index map for file defined engine view..."</span>);</div>
|
||||
<div class="line"><a id="l00149" name="l00149"></a><span class="lineno"> 149</span> std::unordered_map<Species, size_t> fullSpeciesReverseMap;</div>
|
||||
<div class="line"><a id="l00150" name="l00150"></a><span class="lineno"> 150</span> <span class="keyword">const</span> <span class="keyword">auto</span>& fullSpeciesList = <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ad8454c98fa9a4bb45dc81059bc51fc81">m_baseEngine</a>.getNetworkSpecies();</div>
|
||||
<div class="line"><a id="l00151" name="l00151"></a><span class="lineno"> 151</span> </div>
|
||||
<div class="line"><a id="l00152" name="l00152"></a><span class="lineno"> 152</span> fullSpeciesReverseMap.reserve(fullSpeciesList.size());</div>
|
||||
<div class="line"><a id="l00153" name="l00153"></a><span class="lineno"> 153</span> </div>
|
||||
<div class="line"><a id="l00154" name="l00154"></a><span class="lineno"> 154</span> <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i = 0; i < fullSpeciesList.size(); ++i) {</div>
|
||||
<div class="line"><a id="l00155" name="l00155"></a><span class="lineno"> 155</span> fullSpeciesReverseMap[fullSpeciesList[i]] = i;</div>
|
||||
<div class="line"><a id="l00156" name="l00156"></a><span class="lineno"> 156</span> }</div>
|
||||
<div class="line"><a id="l00157" name="l00157"></a><span class="lineno"> 157</span> </div>
|
||||
<div class="line"><a id="l00158" name="l00158"></a><span class="lineno"> 158</span> std::vector<size_t> speciesIndexMap;</div>
|
||||
<div class="line"><a id="l00159" name="l00159"></a><span class="lineno"> 159</span> speciesIndexMap.reserve(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a299a0c61aa4f26029c770013c9feff5e">m_activeSpecies</a>.size());</div>
|
||||
<div class="line"><a id="l00160" name="l00160"></a><span class="lineno"> 160</span> </div>
|
||||
<div class="line"><a id="l00161" name="l00161"></a><span class="lineno"> 161</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>& active_species : <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a299a0c61aa4f26029c770013c9feff5e">m_activeSpecies</a>) {</div>
|
||||
<div class="line"><a id="l00162" name="l00162"></a><span class="lineno"> 162</span> <span class="keyword">auto</span> it = fullSpeciesReverseMap.find(active_species);</div>
|
||||
<div class="line"><a id="l00163" name="l00163"></a><span class="lineno"> 163</span> <span class="keywordflow">if</span> (it != fullSpeciesReverseMap.end()) {</div>
|
||||
<div class="line"><a id="l00164" name="l00164"></a><span class="lineno"> 164</span> speciesIndexMap.push_back(it->second);</div>
|
||||
<div class="line"><a id="l00165" name="l00165"></a><span class="lineno"> 165</span> } <span class="keywordflow">else</span> {</div>
|
||||
<div class="line"><a id="l00166" name="l00166"></a><span class="lineno"> 166</span> LOG_ERROR(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a>, <span class="stringliteral">"Species '{}' not found in full species map."</span>, active_species.name());</div>
|
||||
<div class="line"><a id="l00167" name="l00167"></a><span class="lineno"> 167</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a> -> flush_log();</div>
|
||||
<div class="line"><a id="l00168" name="l00168"></a><span class="lineno"> 168</span> <span class="keywordflow">throw</span> std::runtime_error(<span class="stringliteral">"Species not found in full species map: "</span> + std::string(active_species.name()));</div>
|
||||
<div class="line"><a id="l00169" name="l00169"></a><span class="lineno"> 169</span> }</div>
|
||||
<div class="line"><a id="l00170" name="l00170"></a><span class="lineno"> 170</span> }</div>
|
||||
<div class="line"><a id="l00171" name="l00171"></a><span class="lineno"> 171</span> LOG_TRACE_L1(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a>, <span class="stringliteral">"Species index map constructed with {} entries."</span>, speciesIndexMap.size());</div>
|
||||
<div class="line"><a id="l00172" name="l00172"></a><span class="lineno"> 172</span> <span class="keywordflow">return</span> speciesIndexMap;</div>
|
||||
<div class="line"><a id="l00173" name="l00173"></a><span class="lineno"> 173</span> </div>
|
||||
<div class="line"><a id="l00174" name="l00174"></a><span class="lineno"> 174</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00175" name="l00175"></a><span class="lineno"> 175</span> </div>
|
||||
<div class="foldopen" id="foldopen00176" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00176" name="l00176"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#aebb3f3548f8781506f31580706810a4e"> 176</a></span> std::vector<size_t> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#aebb3f3548f8781506f31580706810a4e">FileDefinedEngineView::constructReactionIndexMap</a>()<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00177" name="l00177"></a><span class="lineno"> 177</span> LOG_TRACE_L1(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a>, <span class="stringliteral">"Constructing reaction index map for file defined engine view..."</span>);</div>
|
||||
<div class="line"><a id="l00178" name="l00178"></a><span class="lineno"> 178</span> </div>
|
||||
<div class="line"><a id="l00179" name="l00179"></a><span class="lineno"> 179</span> <span class="comment">// --- Step 1: Create a reverse map using the reaction's unique ID as the key. ---</span></div>
|
||||
<div class="line"><a id="l00180" name="l00180"></a><span class="lineno"> 180</span> std::unordered_map<std::string_view, size_t> fullReactionReverseMap;</div>
|
||||
<div class="line"><a id="l00181" name="l00181"></a><span class="lineno"> 181</span> <span class="keyword">const</span> <span class="keyword">auto</span>& fullReactionSet = <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ad8454c98fa9a4bb45dc81059bc51fc81">m_baseEngine</a>.getNetworkReactions();</div>
|
||||
<div class="line"><a id="l00182" name="l00182"></a><span class="lineno"> 182</span> fullReactionReverseMap.reserve(fullReactionSet.size());</div>
|
||||
<div class="line"><a id="l00183" name="l00183"></a><span class="lineno"> 183</span> </div>
|
||||
<div class="line"><a id="l00184" name="l00184"></a><span class="lineno"> 184</span> <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i_full = 0; i_full < fullReactionSet.size(); ++i_full) {</div>
|
||||
<div class="line"><a id="l00185" name="l00185"></a><span class="lineno"> 185</span> fullReactionReverseMap[fullReactionSet[i_full].id()] = i_full;</div>
|
||||
<div class="line"><a id="l00186" name="l00186"></a><span class="lineno"> 186</span> }</div>
|
||||
<div class="line"><a id="l00187" name="l00187"></a><span class="lineno"> 187</span> </div>
|
||||
<div class="line"><a id="l00188" name="l00188"></a><span class="lineno"> 188</span> <span class="comment">// --- Step 2: Build the final index map using the active reaction set. ---</span></div>
|
||||
<div class="line"><a id="l00189" name="l00189"></a><span class="lineno"> 189</span> std::vector<size_t> reactionIndexMap;</div>
|
||||
<div class="line"><a id="l00190" name="l00190"></a><span class="lineno"> 190</span> reactionIndexMap.reserve(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ae012da2b1f6169cb13e6075a73353ab2">m_activeReactions</a>.size());</div>
|
||||
<div class="line"><a id="l00191" name="l00191"></a><span class="lineno"> 191</span> </div>
|
||||
<div class="line"><a id="l00192" name="l00192"></a><span class="lineno"> 192</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>& active_reaction_ptr : <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ae012da2b1f6169cb13e6075a73353ab2">m_activeReactions</a>) {</div>
|
||||
<div class="line"><a id="l00193" name="l00193"></a><span class="lineno"> 193</span> <span class="keyword">auto</span> it = fullReactionReverseMap.find(active_reaction_ptr.id());</div>
|
||||
<div class="line"><a id="l00194" name="l00194"></a><span class="lineno"> 194</span> </div>
|
||||
<div class="line"><a id="l00195" name="l00195"></a><span class="lineno"> 195</span> <span class="keywordflow">if</span> (it != fullReactionReverseMap.end()) {</div>
|
||||
<div class="line"><a id="l00196" name="l00196"></a><span class="lineno"> 196</span> reactionIndexMap.push_back(it->second);</div>
|
||||
<div class="line"><a id="l00197" name="l00197"></a><span class="lineno"> 197</span> } <span class="keywordflow">else</span> {</div>
|
||||
<div class="line"><a id="l00198" name="l00198"></a><span class="lineno"> 198</span> LOG_ERROR(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a>, <span class="stringliteral">"Active reaction '{}' not found in base engine during reaction index map construction."</span>, active_reaction_ptr.id());</div>
|
||||
<div class="line"><a id="l00199" name="l00199"></a><span class="lineno"> 199</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a>->flush_log();</div>
|
||||
<div class="line"><a id="l00200" name="l00200"></a><span class="lineno"> 200</span> <span class="keywordflow">throw</span> std::runtime_error(<span class="stringliteral">"Mismatch between active reactions and base engine."</span>);</div>
|
||||
<div class="line"><a id="l00201" name="l00201"></a><span class="lineno"> 201</span> }</div>
|
||||
<div class="line"><a id="l00202" name="l00202"></a><span class="lineno"> 202</span> }</div>
|
||||
<div class="line"><a id="l00203" name="l00203"></a><span class="lineno"> 203</span> </div>
|
||||
<div class="line"><a id="l00204" name="l00204"></a><span class="lineno"> 204</span> LOG_TRACE_L1(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a>, <span class="stringliteral">"Reaction index map constructed with {} entries."</span>, reactionIndexMap.size());</div>
|
||||
<div class="line"><a id="l00205" name="l00205"></a><span class="lineno"> 205</span> <span class="keywordflow">return</span> reactionIndexMap;</div>
|
||||
<div class="line"><a id="l00206" name="l00206"></a><span class="lineno"> 206</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00207" name="l00207"></a><span class="lineno"> 207</span> </div>
|
||||
<div class="foldopen" id="foldopen00208" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00208" name="l00208"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#a3b5162b7be35405285ef9f825ec2663b"> 208</a></span> <span class="keywordtype">void</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a3b5162b7be35405285ef9f825ec2663b">FileDefinedEngineView::buildFromFile</a>(<span class="keyword">const</span> std::string &fileName) {</div>
|
||||
<div class="line"><a id="l00209" name="l00209"></a><span class="lineno"> 209</span> LOG_TRACE_L1(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a>, <span class="stringliteral">"Building file defined engine view from {}..."</span>, fileName);</div>
|
||||
<div class="line"><a id="l00210" name="l00210"></a><span class="lineno"> 210</span> <span class="keyword">auto</span> [reactionPENames] = <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a0a9b07176cb93b54c677b6ce71fda500">m_parser</a>.parse(fileName);</div>
|
||||
<div class="line"><a id="l00211" name="l00211"></a><span class="lineno"> 211</span> </div>
|
||||
<div class="line"><a id="l00212" name="l00212"></a><span class="lineno"> 212</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ae012da2b1f6169cb13e6075a73353ab2">m_activeReactions</a>.clear();</div>
|
||||
<div class="line"><a id="l00213" name="l00213"></a><span class="lineno"> 213</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a299a0c61aa4f26029c770013c9feff5e">m_activeSpecies</a>.clear();</div>
|
||||
<div class="line"><a id="l00214" name="l00214"></a><span class="lineno"> 214</span> </div>
|
||||
<div class="line"><a id="l00215" name="l00215"></a><span class="lineno"> 215</span> std::unordered_set<Species> seenSpecies;</div>
|
||||
<div class="line"><a id="l00216" name="l00216"></a><span class="lineno"> 216</span> </div>
|
||||
<div class="line"><a id="l00217" name="l00217"></a><span class="lineno"> 217</span> <span class="keyword">const</span> <span class="keyword">auto</span>& fullNetworkReactionSet = <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ad8454c98fa9a4bb45dc81059bc51fc81">m_baseEngine</a>.getNetworkReactions();</div>
|
||||
<div class="line"><a id="l00218" name="l00218"></a><span class="lineno"> 218</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>& peName : reactionPENames) {</div>
|
||||
<div class="line"><a id="l00219" name="l00219"></a><span class="lineno"> 219</span> <span class="keywordflow">if</span> (!fullNetworkReactionSet.contains(peName)) {</div>
|
||||
<div class="line"><a id="l00220" name="l00220"></a><span class="lineno"> 220</span> LOG_ERROR(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a>, <span class="stringliteral">"Reaction with name '{}' not found in the base engine's network reactions. Aborting..."</span>, peName);</div>
|
||||
<div class="line"><a id="l00221" name="l00221"></a><span class="lineno"> 221</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a>->flush_log();</div>
|
||||
<div class="line"><a id="l00222" name="l00222"></a><span class="lineno"> 222</span> <span class="keywordflow">throw</span> std::runtime_error(<span class="stringliteral">"Reaction with name '"</span> + std::string(peName) + <span class="stringliteral">"' not found in the base engine's network reactions."</span>);</div>
|
||||
<div class="line"><a id="l00223" name="l00223"></a><span class="lineno"> 223</span> }</div>
|
||||
<div class="line"><a id="l00224" name="l00224"></a><span class="lineno"> 224</span> <span class="keyword">auto</span> <a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a> = fullNetworkReactionSet[peName];</div>
|
||||
<div class="line"><a id="l00225" name="l00225"></a><span class="lineno"> 225</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>& reactant : <a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a>.reactants()) {</div>
|
||||
<div class="line"><a id="l00226" name="l00226"></a><span class="lineno"> 226</span> <span class="keywordflow">if</span> (!seenSpecies.contains(reactant)) {</div>
|
||||
<div class="line"><a id="l00227" name="l00227"></a><span class="lineno"> 227</span> seenSpecies.insert(reactant);</div>
|
||||
<div class="line"><a id="l00228" name="l00228"></a><span class="lineno"> 228</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a299a0c61aa4f26029c770013c9feff5e">m_activeSpecies</a>.push_back(reactant);</div>
|
||||
<div class="line"><a id="l00229" name="l00229"></a><span class="lineno"> 229</span> }</div>
|
||||
<div class="line"><a id="l00230" name="l00230"></a><span class="lineno"> 230</span> }</div>
|
||||
<div class="line"><a id="l00231" name="l00231"></a><span class="lineno"> 231</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>& product : <a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a>.products()) {</div>
|
||||
<div class="line"><a id="l00232" name="l00232"></a><span class="lineno"> 232</span> <span class="keywordflow">if</span> (!seenSpecies.contains(product)) {</div>
|
||||
<div class="line"><a id="l00233" name="l00233"></a><span class="lineno"> 233</span> seenSpecies.insert(product);</div>
|
||||
<div class="line"><a id="l00234" name="l00234"></a><span class="lineno"> 234</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a299a0c61aa4f26029c770013c9feff5e">m_activeSpecies</a>.push_back(product);</div>
|
||||
<div class="line"><a id="l00235" name="l00235"></a><span class="lineno"> 235</span> }</div>
|
||||
<div class="line"><a id="l00236" name="l00236"></a><span class="lineno"> 236</span> }</div>
|
||||
<div class="line"><a id="l00237" name="l00237"></a><span class="lineno"> 237</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ae012da2b1f6169cb13e6075a73353ab2">m_activeReactions</a>.add_reaction(<a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a>);</div>
|
||||
<div class="line"><a id="l00238" name="l00238"></a><span class="lineno"> 238</span> }</div>
|
||||
<div class="line"><a id="l00239" name="l00239"></a><span class="lineno"> 239</span> LOG_TRACE_L1(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a>, <span class="stringliteral">"File defined engine view built with {} active species and {} active reactions."</span>, <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a299a0c61aa4f26029c770013c9feff5e">m_activeSpecies</a>.size(), <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ae012da2b1f6169cb13e6075a73353ab2">m_activeReactions</a>.size());</div>
|
||||
<div class="line"><a id="l00240" name="l00240"></a><span class="lineno"> 240</span> LOG_DEBUG(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a>, <span class="stringliteral">"Active species: {}"</span>, [<span class="keyword">this</span>]() -> std::string {</div>
|
||||
<div class="line"><a id="l00241" name="l00241"></a><span class="lineno"> 241</span> std::string result;</div>
|
||||
<div class="line"><a id="l00242" name="l00242"></a><span class="lineno"> 242</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>& species : <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a299a0c61aa4f26029c770013c9feff5e">m_activeSpecies</a>) {</div>
|
||||
<div class="line"><a id="l00243" name="l00243"></a><span class="lineno"> 243</span> result += std::string(species.name()) + <span class="stringliteral">", "</span>;</div>
|
||||
<div class="line"><a id="l00244" name="l00244"></a><span class="lineno"> 244</span> }</div>
|
||||
<div class="line"><a id="l00245" name="l00245"></a><span class="lineno"> 245</span> <span class="keywordflow">if</span> (!result.empty()) {</div>
|
||||
<div class="line"><a id="l00246" name="l00246"></a><span class="lineno"> 246</span> result.pop_back(); <span class="comment">// Remove last space</span></div>
|
||||
<div class="line"><a id="l00247" name="l00247"></a><span class="lineno"> 247</span> result.pop_back(); <span class="comment">// Remove last comma</span></div>
|
||||
<div class="line"><a id="l00248" name="l00248"></a><span class="lineno"> 248</span> }</div>
|
||||
<div class="line"><a id="l00249" name="l00249"></a><span class="lineno"> 249</span> <span class="keywordflow">return</span> result;</div>
|
||||
<div class="line"><a id="l00250" name="l00250"></a><span class="lineno"> 250</span> }());</div>
|
||||
<div class="line"><a id="l00251" name="l00251"></a><span class="lineno"> 251</span> LOG_DEBUG(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a>, <span class="stringliteral">"Active reactions: {}"</span>, [<span class="keyword">this</span>]() -> std::string {</div>
|
||||
<div class="line"><a id="l00252" name="l00252"></a><span class="lineno"> 252</span> std::string result;</div>
|
||||
<div class="line"><a id="l00253" name="l00253"></a><span class="lineno"> 253</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>& <a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a> : <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ae012da2b1f6169cb13e6075a73353ab2">m_activeReactions</a>) {</div>
|
||||
<div class="line"><a id="l00254" name="l00254"></a><span class="lineno"> 254</span> result += std::string(<a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a>.id()) + <span class="stringliteral">", "</span>;</div>
|
||||
<div class="line"><a id="l00255" name="l00255"></a><span class="lineno"> 255</span> }</div>
|
||||
<div class="line"><a id="l00256" name="l00256"></a><span class="lineno"> 256</span> <span class="keywordflow">if</span> (!result.empty()) {</div>
|
||||
<div class="line"><a id="l00257" name="l00257"></a><span class="lineno"> 257</span> result.pop_back(); <span class="comment">// Remove last space</span></div>
|
||||
<div class="line"><a id="l00258" name="l00258"></a><span class="lineno"> 258</span> result.pop_back(); <span class="comment">// Remove last comma</span></div>
|
||||
<div class="line"><a id="l00259" name="l00259"></a><span class="lineno"> 259</span> }</div>
|
||||
<div class="line"><a id="l00260" name="l00260"></a><span class="lineno"> 260</span> <span class="keywordflow">return</span> result;</div>
|
||||
<div class="line"><a id="l00261" name="l00261"></a><span class="lineno"> 261</span> }());</div>
|
||||
<div class="line"><a id="l00262" name="l00262"></a><span class="lineno"> 262</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#aebd4a1a584f2784f1df3d503645be03b">m_speciesIndexMap</a> = <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a51ba09ff01fdcac1125d42f276c9a0a7">constructSpeciesIndexMap</a>();</div>
|
||||
<div class="line"><a id="l00263" name="l00263"></a><span class="lineno"> 263</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#af0a77a4749a15aae87bdecfccbd1736e">m_reactionIndexMap</a> = <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#aebb3f3548f8781506f31580706810a4e">constructReactionIndexMap</a>();</div>
|
||||
<div class="line"><a id="l00264" name="l00264"></a><span class="lineno"> 264</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a6e421bc748933be31bed9ff53f12b595">m_isStale</a> = <span class="keyword">false</span>;</div>
|
||||
<div class="line"><a id="l00265" name="l00265"></a><span class="lineno"> 265</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00266" name="l00266"></a><span class="lineno"> 266</span> </div>
|
||||
<div class="foldopen" id="foldopen00267" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00267" name="l00267"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#ac231044e37e0962f664f8465e1ccb022"> 267</a></span> std::vector<double> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ac231044e37e0962f664f8465e1ccb022">FileDefinedEngineView::mapViewToFull</a>(<span class="keyword">const</span> std::vector<double>& culled)<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00268" name="l00268"></a><span class="lineno"> 268</span> std::vector<double> full(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ad8454c98fa9a4bb45dc81059bc51fc81">m_baseEngine</a>.getNetworkSpecies().size(), 0.0);</div>
|
||||
<div class="line"><a id="l00269" name="l00269"></a><span class="lineno"> 269</span> <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i_culled = 0; i_culled < culled.size(); ++i_culled) {</div>
|
||||
<div class="line"><a id="l00270" name="l00270"></a><span class="lineno"> 270</span> <span class="keyword">const</span> <span class="keywordtype">size_t</span> i_full = <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#aebd4a1a584f2784f1df3d503645be03b">m_speciesIndexMap</a>[i_culled];</div>
|
||||
<div class="line"><a id="l00271" name="l00271"></a><span class="lineno"> 271</span> full[i_full] += culled[i_culled];</div>
|
||||
<div class="line"><a id="l00272" name="l00272"></a><span class="lineno"> 272</span> }</div>
|
||||
<div class="line"><a id="l00273" name="l00273"></a><span class="lineno"> 273</span> <span class="keywordflow">return</span> full;</div>
|
||||
<div class="line"><a id="l00274" name="l00274"></a><span class="lineno"> 274</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00275" name="l00275"></a><span class="lineno"> 275</span> </div>
|
||||
<div class="foldopen" id="foldopen00276" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00276" name="l00276"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#a97e5ee4651dbe6754678fe96e4702fee"> 276</a></span> std::vector<double> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a97e5ee4651dbe6754678fe96e4702fee">FileDefinedEngineView::mapFullToView</a>(<span class="keyword">const</span> std::vector<double>& full)<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00277" name="l00277"></a><span class="lineno"> 277</span> std::vector<double> culled(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a299a0c61aa4f26029c770013c9feff5e">m_activeSpecies</a>.size(), 0.0);</div>
|
||||
<div class="line"><a id="l00278" name="l00278"></a><span class="lineno"> 278</span> <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i_culled = 0; i_culled < <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a299a0c61aa4f26029c770013c9feff5e">m_activeSpecies</a>.size(); ++i_culled) {</div>
|
||||
<div class="line"><a id="l00279" name="l00279"></a><span class="lineno"> 279</span> <span class="keyword">const</span> <span class="keywordtype">size_t</span> i_full = <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#aebd4a1a584f2784f1df3d503645be03b">m_speciesIndexMap</a>[i_culled];</div>
|
||||
<div class="line"><a id="l00280" name="l00280"></a><span class="lineno"> 280</span> culled[i_culled] = full[i_full];</div>
|
||||
<div class="line"><a id="l00281" name="l00281"></a><span class="lineno"> 281</span> }</div>
|
||||
<div class="line"><a id="l00282" name="l00282"></a><span class="lineno"> 282</span> <span class="keywordflow">return</span> culled;</div>
|
||||
<div class="line"><a id="l00283" name="l00283"></a><span class="lineno"> 283</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00284" name="l00284"></a><span class="lineno"> 284</span> </div>
|
||||
<div class="foldopen" id="foldopen00285" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00285" name="l00285"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#a8d2c6b9a33b9c8c172bbd2c2e2e9ffaf"> 285</a></span> <span class="keywordtype">size_t</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a8d2c6b9a33b9c8c172bbd2c2e2e9ffaf">FileDefinedEngineView::mapViewToFullSpeciesIndex</a>(<span class="keywordtype">size_t</span> culledSpeciesIndex)<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00286" name="l00286"></a><span class="lineno"> 286</span> <span class="keywordflow">if</span> (culledSpeciesIndex < 0 || culledSpeciesIndex >= <span class="keyword">static_cast<</span><span class="keywordtype">int</span><span class="keyword">></span>(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#aebd4a1a584f2784f1df3d503645be03b">m_speciesIndexMap</a>.size())) {</div>
|
||||
<div class="line"><a id="l00287" name="l00287"></a><span class="lineno"> 287</span> LOG_ERROR(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a>, <span class="stringliteral">"Defined index {} is out of bounds for species index map of size {}."</span>, culledSpeciesIndex, <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#aebd4a1a584f2784f1df3d503645be03b">m_speciesIndexMap</a>.size());</div>
|
||||
<div class="line"><a id="l00288" name="l00288"></a><span class="lineno"> 288</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a>->flush_log();</div>
|
||||
<div class="line"><a id="l00289" name="l00289"></a><span class="lineno"> 289</span> <span class="keywordflow">throw</span> std::out_of_range(<span class="stringliteral">"Defined index "</span> + std::to_string(culledSpeciesIndex) + <span class="stringliteral">" is out of bounds for species index map of size "</span> + std::to_string(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#aebd4a1a584f2784f1df3d503645be03b">m_speciesIndexMap</a>.size()) + <span class="stringliteral">"."</span>);</div>
|
||||
<div class="line"><a id="l00290" name="l00290"></a><span class="lineno"> 290</span> }</div>
|
||||
<div class="line"><a id="l00291" name="l00291"></a><span class="lineno"> 291</span> <span class="keywordflow">return</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#aebd4a1a584f2784f1df3d503645be03b">m_speciesIndexMap</a>[culledSpeciesIndex];</div>
|
||||
<div class="line"><a id="l00292" name="l00292"></a><span class="lineno"> 292</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00293" name="l00293"></a><span class="lineno"> 293</span> </div>
|
||||
<div class="foldopen" id="foldopen00294" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00294" name="l00294"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#ae7d6f0ff9076d59d1245c047bbd1bdb9"> 294</a></span> <span class="keywordtype">size_t</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ae7d6f0ff9076d59d1245c047bbd1bdb9">FileDefinedEngineView::mapViewToFullReactionIndex</a>(<span class="keywordtype">size_t</span> culledReactionIndex)<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00295" name="l00295"></a><span class="lineno"> 295</span> <span class="keywordflow">if</span> (culledReactionIndex < 0 || culledReactionIndex >= <span class="keyword">static_cast<</span><span class="keywordtype">int</span><span class="keyword">></span>(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#af0a77a4749a15aae87bdecfccbd1736e">m_reactionIndexMap</a>.size())) {</div>
|
||||
<div class="line"><a id="l00296" name="l00296"></a><span class="lineno"> 296</span> LOG_ERROR(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a>, <span class="stringliteral">"Defined index {} is out of bounds for reaction index map of size {}."</span>, culledReactionIndex, <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#af0a77a4749a15aae87bdecfccbd1736e">m_reactionIndexMap</a>.size());</div>
|
||||
<div class="line"><a id="l00297" name="l00297"></a><span class="lineno"> 297</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a>->flush_log();</div>
|
||||
<div class="line"><a id="l00298" name="l00298"></a><span class="lineno"> 298</span> <span class="keywordflow">throw</span> std::out_of_range(<span class="stringliteral">"Defined index "</span> + std::to_string(culledReactionIndex) + <span class="stringliteral">" is out of bounds for reaction index map of size "</span> + std::to_string(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#af0a77a4749a15aae87bdecfccbd1736e">m_reactionIndexMap</a>.size()) + <span class="stringliteral">"."</span>);</div>
|
||||
<div class="line"><a id="l00299" name="l00299"></a><span class="lineno"> 299</span> }</div>
|
||||
<div class="line"><a id="l00300" name="l00300"></a><span class="lineno"> 300</span> <span class="keywordflow">return</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#af0a77a4749a15aae87bdecfccbd1736e">m_reactionIndexMap</a>[culledReactionIndex];</div>
|
||||
<div class="line"><a id="l00301" name="l00301"></a><span class="lineno"> 301</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00302" name="l00302"></a><span class="lineno"> 302</span> </div>
|
||||
<div class="foldopen" id="foldopen00303" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00303" name="l00303"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#ae3f99002ab2c56a5bcdec00839f8628f"> 303</a></span> <span class="keywordtype">void</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ae3f99002ab2c56a5bcdec00839f8628f">FileDefinedEngineView::validateNetworkState</a>()<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00304" name="l00304"></a><span class="lineno"> 304</span> <span class="keywordflow">if</span> (<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a6e421bc748933be31bed9ff53f12b595">m_isStale</a>) {</div>
|
||||
<div class="line"><a id="l00305" name="l00305"></a><span class="lineno"> 305</span> LOG_ERROR(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a>, <span class="stringliteral">"File defined engine view is stale. Please call update() with a valid NetIn object."</span>);</div>
|
||||
<div class="line"><a id="l00306" name="l00306"></a><span class="lineno"> 306</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a>->flush_log();</div>
|
||||
<div class="line"><a id="l00307" name="l00307"></a><span class="lineno"> 307</span> <span class="keywordflow">throw</span> std::runtime_error(<span class="stringliteral">"File defined engine view is stale. Please call update() with a valid NetIn object."</span>);</div>
|
||||
<div class="line"><a id="l00308" name="l00308"></a><span class="lineno"> 308</span> }</div>
|
||||
<div class="line"><a id="l00309" name="l00309"></a><span class="lineno"> 309</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00310" name="l00310"></a><span class="lineno"> 310</span>}</div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_dynamic_engine_html"><div class="ttname"><a href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></div><div class="ttdoc">Abstract class for engines supporting Jacobian and stoichiometry operations.</div><div class="ttdef"><b>Definition</b> <a href="engine__abstract_8h_source.html#l00121">engine_abstract.h:121</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a0a9b07176cb93b54c677b6ce71fda500"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a0a9b07176cb93b54c677b6ce71fda500">gridfire::FileDefinedEngineView::m_parser</a></div><div class="ttdeci">const io::NetworkFileParser & m_parser</div><div class="ttdoc">Parser for the network file.</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8h_source.html#l00078">engine_defined.h:78</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a0ef8804780d13bbfce0856237bb00470"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a0ef8804780d13bbfce0856237bb00470">gridfire::FileDefinedEngineView::getJacobianMatrixEntry</a></div><div class="ttdeci">double getJacobianMatrixEntry(const int i_defined, const int j_defined) const override</div><div class="ttdoc">Get an entry from the previously generated Jacobian matrix.</div><div class="ttdef"><b>Definition</b> <a href="#l00056">engine_defined.cpp:56</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a1b343998b93955025a589b2b4541e33b"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a1b343998b93955025a589b2b4541e33b">gridfire::FileDefinedEngineView::m_fileName</a></div><div class="ttdeci">std::string m_fileName</div><div class="ttdoc">Name of the file defining the reaction set considered by the engine view.</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8h_source.html#l00077">engine_defined.h:77</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a27a5163157cc15c4cb3b99a5d3564dbd"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a27a5163157cc15c4cb3b99a5d3564dbd">gridfire::FileDefinedEngineView::generateStoichiometryMatrix</a></div><div class="ttdeci">void generateStoichiometryMatrix() override</div><div class="ttdoc">Generate the stoichiometry matrix for the network.</div><div class="ttdef"><b>Definition</b> <a href="#l00068">engine_defined.cpp:68</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a299a0c61aa4f26029c770013c9feff5e"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a299a0c61aa4f26029c770013c9feff5e">gridfire::FileDefinedEngineView::m_activeSpecies</a></div><div class="ttdeci">std::vector< fourdst::atomic::Species > m_activeSpecies</div><div class="ttdoc">Active species in the defined engine.</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8h_source.html#l00080">engine_defined.h:80</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a2c1d88b06568f9ea4c65e794d012ebfb"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a2c1d88b06568f9ea4c65e794d012ebfb">gridfire::FileDefinedEngineView::calculateRHSAndEnergy</a></div><div class="ttdeci">StepDerivatives< double > calculateRHSAndEnergy(const std::vector< double > &Y_defined, const double T9, const double rho) const override</div><div class="ttdoc">Calculate the right-hand side (dY/dt) and energy generation.</div><div class="ttdef"><b>Definition</b> <a href="#l00029">engine_defined.cpp:29</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a3b5162b7be35405285ef9f825ec2663b"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a3b5162b7be35405285ef9f825ec2663b">gridfire::FileDefinedEngineView::buildFromFile</a></div><div class="ttdeci">void buildFromFile(const std::string &fileName)</div><div class="ttdef"><b>Definition</b> <a href="#l00208">engine_defined.cpp:208</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a48b2451f96b8f5511ffc4071519c0810"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a48b2451f96b8f5511ffc4071519c0810">gridfire::FileDefinedEngineView::generateJacobianMatrix</a></div><div class="ttdeci">void generateJacobianMatrix(const std::vector< double > &Y_defined, const double T9, const double rho) override</div><div class="ttdoc">Generate the Jacobian matrix for the current state.</div><div class="ttdef"><b>Definition</b> <a href="#l00045">engine_defined.cpp:45</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a4c8b273c5cb3d470567c5691b68493a3"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a4c8b273c5cb3d470567c5691b68493a3">gridfire::FileDefinedEngineView::getBaseEngine</a></div><div class="ttdeci">const DynamicEngine & getBaseEngine() const override</div><div class="ttdoc">Access the underlying engine instance.</div><div class="ttdef"><b>Definition</b> <a href="#l00021">engine_defined.cpp:21</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a51ba09ff01fdcac1125d42f276c9a0a7"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a51ba09ff01fdcac1125d42f276c9a0a7">gridfire::FileDefinedEngineView::constructSpeciesIndexMap</a></div><div class="ttdeci">std::vector< size_t > constructSpeciesIndexMap() const</div><div class="ttdoc">Constructs the species index map.</div><div class="ttdef"><b>Definition</b> <a href="#l00147">engine_defined.cpp:147</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a5bbea17b69cc8f81bc251a04f4435a0c"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a5bbea17b69cc8f81bc251a04f4435a0c">gridfire::FileDefinedEngineView::getNetworkReactions</a></div><div class="ttdeci">const reaction::LogicalReactionSet & getNetworkReactions() const override</div><div class="ttdoc">Get the set of logical reactions in the network.</div><div class="ttdef"><b>Definition</b> <a href="#l00102">engine_defined.cpp:102</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a6e421bc748933be31bed9ff53f12b595"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a6e421bc748933be31bed9ff53f12b595">gridfire::FileDefinedEngineView::m_isStale</a></div><div class="ttdeci">bool m_isStale</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8h_source.html#l00086">engine_defined.h:86</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a8bb583e039b49608272997ed2d3387fa"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a8bb583e039b49608272997ed2d3387fa">gridfire::FileDefinedEngineView::getNetworkSpecies</a></div><div class="ttdeci">const std::vector< fourdst::atomic::Species > & getNetworkSpecies() const override</div><div class="ttdoc">Get the list of species in the network.</div><div class="ttdef"><b>Definition</b> <a href="#l00025">engine_defined.cpp:25</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a8d2c6b9a33b9c8c172bbd2c2e2e9ffaf"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a8d2c6b9a33b9c8c172bbd2c2e2e9ffaf">gridfire::FileDefinedEngineView::mapViewToFullSpeciesIndex</a></div><div class="ttdeci">size_t mapViewToFullSpeciesIndex(size_t culledSpeciesIndex) const</div><div class="ttdoc">Maps a culled species index to a full species index.</div><div class="ttdef"><b>Definition</b> <a href="#l00285">engine_defined.cpp:285</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a8f2f64bab0f516ed2a6fd529912e0acd"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a8f2f64bab0f516ed2a6fd529912e0acd">gridfire::FileDefinedEngineView::FileDefinedEngineView</a></div><div class="ttdeci">FileDefinedEngineView(DynamicEngine &baseEngine, const std::string &fileName, const io::NetworkFileParser &parser)</div><div class="ttdef"><b>Definition</b> <a href="#l00008">engine_defined.cpp:8</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a92f14da849e99d07c1ff1347addb9263"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a92f14da849e99d07c1ff1347addb9263">gridfire::FileDefinedEngineView::setNetworkFile</a></div><div class="ttdeci">void setNetworkFile(const std::string &fileName)</div><div class="ttdef"><b>Definition</b> <a href="#l00133">engine_defined.cpp:133</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a97e5ee4651dbe6754678fe96e4702fee"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a97e5ee4651dbe6754678fe96e4702fee">gridfire::FileDefinedEngineView::mapFullToView</a></div><div class="ttdeci">std::vector< double > mapFullToView(const std::vector< double > &full) const</div><div class="ttdoc">Maps a vector of full abundances to a vector of culled abundances.</div><div class="ttdef"><b>Definition</b> <a href="#l00276">engine_defined.cpp:276</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a9d93633ed4ab68de94b7274f879a0432"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">gridfire::FileDefinedEngineView::m_logger</a></div><div class="ttdeci">quill::Logger * m_logger</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8h_source.html#l00074">engine_defined.h:74</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a9da9224f5c99a5068f3d8cbf066e4693"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a9da9224f5c99a5068f3d8cbf066e4693">gridfire::FileDefinedEngineView::getStoichiometryMatrixEntry</a></div><div class="ttdeci">int getStoichiometryMatrixEntry(const int speciesIndex_defined, const int reactionIndex_defined) const override</div><div class="ttdoc">Get an entry from the stoichiometry matrix.</div><div class="ttdef"><b>Definition</b> <a href="#l00074">engine_defined.cpp:74</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_ac231044e37e0962f664f8465e1ccb022"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#ac231044e37e0962f664f8465e1ccb022">gridfire::FileDefinedEngineView::mapViewToFull</a></div><div class="ttdeci">std::vector< double > mapViewToFull(const std::vector< double > &culled) const</div><div class="ttdoc">Maps a vector of culled abundances to a vector of full abundances.</div><div class="ttdef"><b>Definition</b> <a href="#l00267">engine_defined.cpp:267</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_ac371fb66fd0a76a04df204c9dd9a05ef"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#ac371fb66fd0a76a04df204c9dd9a05ef">gridfire::FileDefinedEngineView::calculateMolarReactionFlow</a></div><div class="ttdeci">double calculateMolarReactionFlow(const reaction::Reaction &reaction, const std::vector< double > &Y_defined, const double T9, const double rho) const override</div><div class="ttdoc">Calculate the molar reaction flow for a given reaction.</div><div class="ttdef"><b>Definition</b> <a href="#l00085">engine_defined.cpp:85</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_ace3568eadaba69e7357b4386c5ca3eb0"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#ace3568eadaba69e7357b4386c5ca3eb0">gridfire::FileDefinedEngineView::update</a></div><div class="ttdeci">void update(const NetIn &netIn) override</div><div class="ttdef"><b>Definition</b> <a href="#l00127">engine_defined.cpp:127</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_ace3c6ea4841318c08695973ab3dcddc6"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#ace3c6ea4841318c08695973ab3dcddc6">gridfire::FileDefinedEngineView::getSpeciesTimescales</a></div><div class="ttdeci">std::unordered_map< fourdst::atomic::Species, double > getSpeciesTimescales(const std::vector< double > &Y_defined, const double T9, const double rho) const override</div><div class="ttdoc">Compute timescales for all species in the network.</div><div class="ttdef"><b>Definition</b> <a href="#l00108">engine_defined.cpp:108</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_ad8454c98fa9a4bb45dc81059bc51fc81"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#ad8454c98fa9a4bb45dc81059bc51fc81">gridfire::FileDefinedEngineView::m_baseEngine</a></div><div class="ttdeci">DynamicEngine & m_baseEngine</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8h_source.html#l00076">engine_defined.h:76</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_ad96bbee6d3d37b50d9236a975ef704c0"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#ad96bbee6d3d37b50d9236a975ef704c0">gridfire::FileDefinedEngineView::setScreeningModel</a></div><div class="ttdeci">void setScreeningModel(screening::ScreeningType model) override</div><div class="ttdef"><b>Definition</b> <a href="#l00139">engine_defined.cpp:139</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_adbc50f397445f92b810d80cf329b8626"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#adbc50f397445f92b810d80cf329b8626">gridfire::FileDefinedEngineView::getScreeningModel</a></div><div class="ttdeci">screening::ScreeningType getScreeningModel() const override</div><div class="ttdef"><b>Definition</b> <a href="#l00143">engine_defined.cpp:143</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_ae012da2b1f6169cb13e6075a73353ab2"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#ae012da2b1f6169cb13e6075a73353ab2">gridfire::FileDefinedEngineView::m_activeReactions</a></div><div class="ttdeci">reaction::LogicalReactionSet m_activeReactions</div><div class="ttdoc">Active reactions in the defined engine.</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8h_source.html#l00081">engine_defined.h:81</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_ae3f99002ab2c56a5bcdec00839f8628f"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#ae3f99002ab2c56a5bcdec00839f8628f">gridfire::FileDefinedEngineView::validateNetworkState</a></div><div class="ttdeci">void validateNetworkState() const</div><div class="ttdef"><b>Definition</b> <a href="#l00303">engine_defined.cpp:303</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_ae7d6f0ff9076d59d1245c047bbd1bdb9"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#ae7d6f0ff9076d59d1245c047bbd1bdb9">gridfire::FileDefinedEngineView::mapViewToFullReactionIndex</a></div><div class="ttdeci">size_t mapViewToFullReactionIndex(size_t culledReactionIndex) const</div><div class="ttdoc">Maps a culled reaction index to a full reaction index.</div><div class="ttdef"><b>Definition</b> <a href="#l00294">engine_defined.cpp:294</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_aebb3f3548f8781506f31580706810a4e"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#aebb3f3548f8781506f31580706810a4e">gridfire::FileDefinedEngineView::constructReactionIndexMap</a></div><div class="ttdeci">std::vector< size_t > constructReactionIndexMap() const</div><div class="ttdoc">Constructs the reaction index map.</div><div class="ttdef"><b>Definition</b> <a href="#l00176">engine_defined.cpp:176</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_aebd4a1a584f2784f1df3d503645be03b"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#aebd4a1a584f2784f1df3d503645be03b">gridfire::FileDefinedEngineView::m_speciesIndexMap</a></div><div class="ttdeci">std::vector< size_t > m_speciesIndexMap</div><div class="ttdoc">Maps indices of active species to indices in the full network.</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8h_source.html#l00083">engine_defined.h:83</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_af0a77a4749a15aae87bdecfccbd1736e"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#af0a77a4749a15aae87bdecfccbd1736e">gridfire::FileDefinedEngineView::m_reactionIndexMap</a></div><div class="ttdeci">std::vector< size_t > m_reactionIndexMap</div><div class="ttdoc">Maps indices of active reactions to indices in the full network.</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8h_source.html#l00084">engine_defined.h:84</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1io_1_1_network_file_parser_html"><div class="ttname"><a href="classgridfire_1_1io_1_1_network_file_parser.html">gridfire::io::NetworkFileParser</a></div><div class="ttdef"><b>Definition</b> <a href="network__file_8h_source.html#l00017">network_file.h:17</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1reaction_1_1_reaction_html"><div class="ttname"><a href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></div><div class="ttdoc">Represents a single nuclear reaction from a specific data source.</div><div class="ttdef"><b>Definition</b> <a href="reaction_8h_source.html#l00072">reaction.h:72</a></div></div>
|
||||
<div class="ttc" id="aengine__defined_8h_html"><div class="ttname"><a href="engine__defined_8h.html">engine_defined.h</a></div></div>
|
||||
<div class="ttc" id="anamespacegridfire_1_1reaction_html"><div class="ttname"><a href="namespacegridfire_1_1reaction.html">gridfire::reaction</a></div><div class="ttdef"><b>Definition</b> <a href="reaction_8h_source.html#l00025">reaction.h:25</a></div></div>
|
||||
<div class="ttc" id="anamespacegridfire_1_1reaction_html_aa86f08712565f278adacc7cd2361eb31"><div class="ttname"><a href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">gridfire::reaction::LogicalReactionSet</a></div><div class="ttdeci">TemplatedReactionSet< LogicalReaction > LogicalReactionSet</div><div class="ttdoc">A set of logical reactions.</div><div class="ttdef"><b>Definition</b> <a href="reaction_8h_source.html#l00557">reaction.h:557</a></div></div>
|
||||
<div class="ttc" id="anamespacegridfire_1_1screening_html_aa82aafbc4f8c28d0a75b60798e3a7d25"><div class="ttname"><a href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">gridfire::screening::ScreeningType</a></div><div class="ttdeci">ScreeningType</div><div class="ttdef"><b>Definition</b> <a href="screening__types_8h_source.html#l00008">screening_types.h:8</a></div></div>
|
||||
<div class="ttc" id="anamespacegridfire_html"><div class="ttname"><a href="namespacegridfire.html">gridfire</a></div><div class="ttdef"><b>Definition</b> <a href="engine__abstract_8h_source.html#l00024">engine_abstract.h:24</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1_net_in_html"><div class="ttname"><a href="structgridfire_1_1_net_in.html">gridfire::NetIn</a></div><div class="ttdef"><b>Definition</b> <a href="network_8h_source.html#l00053">network.h:53</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1_step_derivatives_html"><div class="ttname"><a href="structgridfire_1_1_step_derivatives.html">gridfire::StepDerivatives</a></div><div class="ttdoc">Structure holding derivatives and energy generation for a network step.</div><div class="ttdef"><b>Definition</b> <a href="engine__abstract_8h_source.html#l00053">engine_abstract.h:53</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1_step_derivatives_html_ab4aeb41be952c7b5844e1ee81fef9008"><div class="ttname"><a href="structgridfire_1_1_step_derivatives.html#ab4aeb41be952c7b5844e1ee81fef9008">gridfire::StepDerivatives::nuclearEnergyGenerationRate</a></div><div class="ttdeci">T nuclearEnergyGenerationRate</div><div class="ttdoc">Specific energy generation rate (e.g., erg/g/s).</div><div class="ttdef"><b>Definition</b> <a href="engine__abstract_8h_source.html#l00055">engine_abstract.h:55</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1_step_derivatives_html_ae0de268b86c2404379409c4feae0b34d"><div class="ttname"><a href="structgridfire_1_1_step_derivatives.html#ae0de268b86c2404379409c4feae0b34d">gridfire::StepDerivatives::dydt</a></div><div class="ttdeci">std::vector< T > dydt</div><div class="ttdoc">Derivatives of abundances (dY/dt for each species).</div><div class="ttdef"><b>Definition</b> <a href="engine__abstract_8h_source.html#l00054">engine_abstract.h:54</a></div></div>
|
||||
</div><!-- fragment --></div><!-- contents -->
|
||||
</div><!-- doc-content -->
|
||||
<!-- start footer part -->
|
||||
<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
|
||||
<ul>
|
||||
<li class="navelem"><a class="el" href="dir_68267d1309a1af8e8297ef4c3efbcdba.html">src</a></li><li class="navelem"><a class="el" href="dir_fc4c7f03e1a69a98c370fae55a743828.html">network</a></li><li class="navelem"><a class="el" href="dir_a7655658c851688eff9381235a9676f0.html">lib</a></li><li class="navelem"><a class="el" href="dir_1cdf727c700d393da216e23f923be8b4.html">engine</a></li><li class="navelem"><a class="el" href="dir_ae72e87b2c96ef2ff3f9c3faf556f8b7.html">views</a></li><li class="navelem"><a class="el" href="engine__defined_8cpp.html">engine_defined.cpp</a></li>
|
||||
<li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
|
||||
</ul>
|
||||
</div>
|
||||
</body>
|
||||
</html>
|
||||
Reference in New Issue
Block a user