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< div id = "projectbrief" > General Purpose Nuclear Network< / div >
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< tr class = "memdesc:" > < td class = "mdescLeft" >   < / td > < td class = "mdescRight" > An engine view that dynamically adapts the reaction network based on runtime conditions. < a href = "classgridfire_1_1_adaptive_engine_view.html#details" > More...< / a > < br / > < / td > < / tr >
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< tr class = "memdesc:" > < td class = "mdescLeft" >   < / td > < td class = "mdescRight" > Abstract class for engines supporting Jacobian and stoichiometry operations. < a href = "classgridfire_1_1_dynamic_engine.html#details" > More...< / a > < br / > < / td > < / tr >
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< tr class = "memdesc:" > < td class = "mdescLeft" >   < / td > < td class = "mdescRight" > Abstract base class for a reaction network engine. < a href = "classgridfire_1_1_engine.html#details" > More...< / a > < br / > < / td > < / tr >
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< tr class = "memdesc:" > < td class = "mdescLeft" >   < / td > < td class = "mdescRight" > Abstract base class for a "view" of a reaction network engine. < a href = "classgridfire_1_1_engine_view.html#details" > More...< / a > < br / > < / td > < / tr >
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< tr class = "memdesc:" > < td class = "mdescLeft" >   < / td > < td class = "mdescRight" > A reaction network engine that uses a graph-based representation. < a href = "classgridfire_1_1_graph_engine.html#details" > More...< / a > < br / > < / td > < / tr >
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< tr class = "memdesc:" > < td class = "mdescLeft" >   < / td > < td class = "mdescRight" > An engine view that partitions the reaction network into multiple groups based on timescales. < a href = "classgridfire_1_1_multiscale_partitioning_engine_view.html#details" > More...< / a > < br / > < / td > < / tr >
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< tr class = "memitem:" > < td class = "memItemLeft" align = "right" valign = "top" > class   < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "classgridfire_1_1_network_priming_engine_view.html" > NetworkPrimingEngineView< / a > < / td > < / tr >
< tr class = "memdesc:" > < td class = "mdescLeft" >   < / td > < td class = "mdescRight" > Provides a view of a < a class = "el" href = "classgridfire_1_1_dynamic_engine.html" title = "Abstract class for engines supporting Jacobian and stoichiometry operations." > DynamicEngine< / a > filtered to reactions involving a specified priming species. < a href = "classgridfire_1_1_network_priming_engine_view.html#details" > More...< / a > < br / > < / td > < / tr >
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< tr class = "memdesc:" > < td class = "mdescLeft" >   < / td > < td class = "mdescRight" > Captures the result of a network priming operation. < a href = "structgridfire_1_1_priming_report.html#details" > More...< / a > < br / > < / td > < / tr >
< tr class = "separator:" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
< tr class = "memitem:" > < td class = "memItemLeft" align = "right" valign = "top" > struct   < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "structgridfire_1_1_q_s_e_cache_config.html" > QSECacheConfig< / a > < / td > < / tr >
< tr class = "memdesc:" > < td class = "mdescLeft" >   < / td > < td class = "mdescRight" > Configuration struct for the QSE cache. < a href = "structgridfire_1_1_q_s_e_cache_config.html#details" > More...< / a > < br / > < / td > < / tr >
< tr class = "separator:" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
< tr class = "memitem:" > < td class = "memItemLeft" align = "right" valign = "top" > struct   < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "structgridfire_1_1_q_s_e_cache_key.html" > QSECacheKey< / a > < / td > < / tr >
< tr class = "memdesc:" > < td class = "mdescLeft" >   < / td > < td class = "mdescRight" > Key struct for the QSE abundance cache. < a href = "structgridfire_1_1_q_s_e_cache_key.html#details" > More...< / a > < br / > < / td > < / tr >
< tr class = "separator:" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
< tr class = "memitem:" > < td class = "memItemLeft" align = "right" valign = "top" > class   < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "classgridfire_1_1_reaction.html" > Reaction< / a > < / td > < / tr >
< tr class = "memdesc:" > < td class = "mdescLeft" >   < / td > < td class = "mdescRight" > Represents a single nuclear reaction from a specific data source. < a href = "classgridfire_1_1_reaction.html#details" > More...< / a > < br / > < / td > < / tr >
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< tr class = "memdesc:" > < td class = "mdescLeft" >   < / td > < td class = "mdescRight" > Structure holding derivatives and energy generation for a network step. < a href = "structgridfire_1_1_step_derivatives.html#details" > More...< / a > < br / > < / td > < / tr >
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< tr class = "memdesc:" > < td class = "mdescLeft" >   < / td > < td class = "mdescRight" > Concept for types allowed in engine calculations. < br / > < / td > < / tr >
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< tr class = "memdesc:" > < td class = "mdescLeft" >   < / td > < td class = "mdescRight" > Concept for types allowed as engine bases in EngineView. < br / > < / td > < / tr >
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Typedefs< / h2 > < / td > < / tr >
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< tr class = "memitem:a898dfe22579e649935645cbd6f073178" id = "r_a898dfe22579e649935645cbd6f073178" > < td class = "memItemLeft" align = "right" valign = "top" > using  < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#a898dfe22579e649935645cbd6f073178" > SparsityPattern< / a > = std::vector< std::pair< size_t, size_t> > < / td > < / tr >
< tr class = "separator:a898dfe22579e649935645cbd6f073178" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
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< tr class = "memitem:a1121d0b2d005195333412559fa29d3cc" id = "r_a1121d0b2d005195333412559fa29d3cc" > < td class = "memItemLeft" align = "right" valign = "top" > typedef CppAD::AD< double >   < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#a1121d0b2d005195333412559fa29d3cc" > ADDouble< / a > < / td > < / tr >
< tr class = "memdesc:a1121d0b2d005195333412559fa29d3cc" > < td class = "mdescLeft" >   < / td > < td class = "mdescRight" > Alias for CppAD AD type for double precision. < br / > < / td > < / tr >
< tr class = "separator:a1121d0b2d005195333412559fa29d3cc" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
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< tr class = "memitem:a3b1f70dc7ff5b501809330a97079e4f6" id = "r_a3b1f70dc7ff5b501809330a97079e4f6" > < td class = "memItemLeft" align = "right" valign = "top" > using  < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#a3b1f70dc7ff5b501809330a97079e4f6" > BuildDepthType< / a > = std::variant< < a class = "el" href = "#a0210bd2e07538932135a56b62b8ddb57" > NetworkBuildDepth< / a > , int> < / td > < / tr >
< tr class = "memdesc:a3b1f70dc7ff5b501809330a97079e4f6" > < td class = "mdescLeft" >   < / td > < td class = "mdescRight" > Variant specifying either a predefined < a class = "el" href = "#a0210bd2e07538932135a56b62b8ddb57" title = "Specifies supported depths for building the reaction network." > NetworkBuildDepth< / a > or a custom integer depth. < br / > < / td > < / tr >
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< / table > < table class = "memberdecls" >
< tr class = "heading" > < td colspan = "2" > < h2 class = "groupheader" > < a id = "enum-members" name = "enum-members" > < / a >
Enumerations< / h2 > < / td > < / tr >
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< tr class = "memitem:a0210bd2e07538932135a56b62b8ddb57" id = "r_a0210bd2e07538932135a56b62b8ddb57" > < td class = "memItemLeft" align = "right" valign = "top" > enum class   < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#a0210bd2e07538932135a56b62b8ddb57" > NetworkBuildDepth< / a > { < br / >
    < a class = "el" href = "#a0210bd2e07538932135a56b62b8ddb57abbd47109890259c0127154db1af26c75" > Full< / a > = -1
, < a class = "el" href = "#a0210bd2e07538932135a56b62b8ddb57a928d0f1285ee7d36c1c2fa1b1b7a164c" > Shallow< / a > = 1
, < a class = "el" href = "#a0210bd2e07538932135a56b62b8ddb57a264572d66aed5373d19dc80c7cde1f46" > SecondOrder< / a > = 2
, < a class = "el" href = "#a0210bd2e07538932135a56b62b8ddb57a3fc719e07f9f63e7f11a3d4fb74b476f" > ThirdOrder< / a > = 3
, < br / >
    < a class = "el" href = "#a0210bd2e07538932135a56b62b8ddb57a100e3bf0197221c19b222badf42aa964" > FourthOrder< / a > = 4
, < a class = "el" href = "#a0210bd2e07538932135a56b62b8ddb57a5105376c2b90747e00bed5bf2953dd56" > FifthOrder< / a > = 5
< br / >
}< / td > < / tr >
< tr class = "memdesc:a0210bd2e07538932135a56b62b8ddb57" > < td class = "mdescLeft" >   < / td > < td class = "mdescRight" > Specifies supported depths for building the reaction network. < a href = "#a0210bd2e07538932135a56b62b8ddb57" > More...< / a > < br / > < / td > < / tr >
< tr class = "separator:a0210bd2e07538932135a56b62b8ddb57" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
< tr class = "memitem:a8bea3d74f35d640e693fa398e9b3e154" id = "r_a8bea3d74f35d640e693fa398e9b3e154" > < td class = "memItemLeft" align = "right" valign = "top" > enum class   < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#a8bea3d74f35d640e693fa398e9b3e154" > PrimingReportStatus< / a > { < br / >
    < a class = "el" href = "#a8bea3d74f35d640e693fa398e9b3e154a64d98633bac1de0eb2a539cbfd2a5c2a" > FULL_SUCCESS< / a > = 0
, < a class = "el" href = "#a8bea3d74f35d640e693fa398e9b3e154a708c14ec56942aa5f32e7bef1e29db45" > NO_SPECIES_TO_PRIME< / a > = 1
, < a class = "el" href = "#a8bea3d74f35d640e693fa398e9b3e154a5afaf45bc4c02208d502d9c0c26d8287" > MAX_ITERATIONS_REACHED< / a > = 2
, < a class = "el" href = "#a8bea3d74f35d640e693fa398e9b3e154ae8870a753743b62c511c939eef95c93f" > FAILED_TO_FINALIZE_COMPOSITION< / a > = 3
, < br / >
    < a class = "el" href = "#a8bea3d74f35d640e693fa398e9b3e154a9870268bdece09274aea75557a19158a" > FAILED_TO_FIND_CREATION_CHANNEL< / a > = 4
, < a class = "el" href = "#a8bea3d74f35d640e693fa398e9b3e154a186367e42446c004076290ca7913d931" > FAILED_TO_FIND_PRIMING_REACTIONS< / a > = 5
, < a class = "el" href = "#a8bea3d74f35d640e693fa398e9b3e154ab837953f2841baabbae6bb5f2e43e71e" > BASE_NETWORK_TOO_SHALLOW< / a > = 6
< br / >
}< / td > < / tr >
< tr class = "memdesc:a8bea3d74f35d640e693fa398e9b3e154" > < td class = "mdescLeft" >   < / td > < td class = "mdescRight" > Enumerates outcome codes for a network priming operation. < a href = "#a8bea3d74f35d640e693fa398e9b3e154" > More...< / a > < br / > < / td > < / tr >
< tr class = "separator:a8bea3d74f35d640e693fa398e9b3e154" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
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< tr class = "memitem:a3f3d6b3f9742b70e62049ccefbb60f37" id = "r_a3f3d6b3f9742b70e62049ccefbb60f37" > < td class = "memItemLeft" align = "right" valign = "top" > enum   < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#a3f3d6b3f9742b70e62049ccefbb60f37" > NetworkFormat< / a > { < a class = "el" href = "#a3f3d6b3f9742b70e62049ccefbb60f37a1fc7adf719c40457abfdb8334675faea" > APPROX8< / a >
, < a class = "el" href = "#a3f3d6b3f9742b70e62049ccefbb60f37a9b8db7b445ae4f1bd114caa42a583182" > REACLIB< / a >
, < a class = "el" href = "#a3f3d6b3f9742b70e62049ccefbb60f37aac700abde5f6ff8b7328193eb19697b2" > UNKNOWN< / a >
}< / td > < / tr >
< tr class = "separator:a3f3d6b3f9742b70e62049ccefbb60f37" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
< / table > < table class = "memberdecls" >
< tr class = "heading" > < td colspan = "2" > < h2 class = "groupheader" > < a id = "func-members" name = "func-members" > < / a >
Functions< / h2 > < / td > < / tr >
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< tr class = "memitem:a384323338f13166d87c7ac047434bd38" id = "r_a384323338f13166d87c7ac047434bd38" > < td class = "memItemLeft" align = "right" valign = "top" > < a class = "el" href = "classgridfire_1_1reaction_1_1_reaction_set.html" > reaction::ReactionSet< / a >   < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#a384323338f13166d87c7ac047434bd38" > build_reaclib_nuclear_network< / a > (const fourdst::composition::Composition & composition, const < a class = "el" href = "classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html" > rates::weak::WeakRateInterpolator< / a > & weakInterpolator, < a class = "el" href = "#a3b1f70dc7ff5b501809330a97079e4f6" > BuildDepthType< / a > maxLayers=< a class = "el" href = "#a0210bd2e07538932135a56b62b8ddb57abbd47109890259c0127154db1af26c75" > NetworkBuildDepth::Full< / a > , bool reverse=false)< / td > < / tr >
< tr class = "memdesc:a384323338f13166d87c7ac047434bd38" > < td class = "mdescLeft" >   < / td > < td class = "mdescRight" > Builds a nuclear reaction network from the Reaclib library based on an initial composition. < br / > < / td > < / tr >
< tr class = "separator:a384323338f13166d87c7ac047434bd38" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
< tr class = "memitem:a3cd451f4b7a7bc7c2d7007ebb343e9ac" id = "r_a3cd451f4b7a7bc7c2d7007ebb343e9ac" > < td class = "memItemLeft" align = "right" valign = "top" > < a class = "el" href = "structgridfire_1_1_priming_report.html" > PrimingReport< / a >   < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#a3cd451f4b7a7bc7c2d7007ebb343e9ac" > primeNetwork< / a > (const < a class = "el" href = "structgridfire_1_1_net_in.html" > NetIn< / a > & netIn, < a class = "el" href = "classgridfire_1_1_dynamic_engine.html" > DynamicEngine< / a > & engine)< / td > < / tr >
< tr class = "memdesc:a3cd451f4b7a7bc7c2d7007ebb343e9ac" > < td class = "mdescLeft" >   < / td > < td class = "mdescRight" > Primes absent species in the network to their equilibrium abundances. < br / > < / td > < / tr >
< tr class = "separator:a3cd451f4b7a7bc7c2d7007ebb343e9ac" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
< tr class = "memitem:ab6e14208fad69f4031411a9346c12397" id = "r_ab6e14208fad69f4031411a9346c12397" > < td class = "memItemLeft" align = "right" valign = "top" > double  < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#ab6e14208fad69f4031411a9346c12397" > calculateDestructionRateConstant< / a > (const < a class = "el" href = "classgridfire_1_1_dynamic_engine.html" > DynamicEngine< / a > & engine, const fourdst::atomic::Species & species, const fourdst::composition::Composition & composition, double T9, double rho)< / td > < / tr >
< tr class = "memdesc:ab6e14208fad69f4031411a9346c12397" > < td class = "mdescLeft" >   < / td > < td class = "mdescRight" > Computes the destruction rate constant for a specific species. < br / > < / td > < / tr >
< tr class = "separator:ab6e14208fad69f4031411a9346c12397" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
< tr class = "memitem:a8995b949592d59850e45a3fd27306369" id = "r_a8995b949592d59850e45a3fd27306369" > < td class = "memItemLeft" align = "right" valign = "top" > double  < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#a8995b949592d59850e45a3fd27306369" > calculateCreationRate< / a > (const < a class = "el" href = "classgridfire_1_1_dynamic_engine.html" > DynamicEngine< / a > & engine, const fourdst::atomic::Species & species, const fourdst::composition::Composition & composition, double T9, double rho)< / td > < / tr >
< tr class = "memdesc:a8995b949592d59850e45a3fd27306369" > < td class = "mdescLeft" >   < / td > < td class = "mdescRight" > Computes the creation rate for a specific species. < br / > < / td > < / tr >
< tr class = "separator:a8995b949592d59850e45a3fd27306369" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
< tr class = "memitem:a58a036e8883e75a8abd3e18798563f71" id = "r_a58a036e8883e75a8abd3e18798563f71" > < td class = "memItemLeft" align = "right" valign = "top" > < a class = "el" href = "classgridfire_1_1reaction_1_1_reaction_set.html" > ReactionSet< / a >   < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#a58a036e8883e75a8abd3e18798563f71" > build_nuclear_network< / a > (const Composition & composition, const < a class = "el" href = "classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html" > rates::weak::WeakRateInterpolator< / a > & weak_interpolator, < a class = "el" href = "#a3b1f70dc7ff5b501809330a97079e4f6" > BuildDepthType< / a > maxLayers, bool reverse_reaclib)< / td > < / tr >
< tr class = "separator:a58a036e8883e75a8abd3e18798563f71" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
< tr class = "memitem:a2fe2e0bd4b2d4b9e0c70cc4eb9d7c48f" id = "r_a2fe2e0bd4b2d4b9e0c70cc4eb9d7c48f" > < td class = "memItemLeft" align = "right" valign = "top" > const < a class = "el" href = "classgridfire_1_1reaction_1_1_reaction.html" > reaction::Reaction< / a > *  < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#a2fe2e0bd4b2d4b9e0c70cc4eb9d7c48f" > findDominantCreationChannel< / a > (const < a class = "el" href = "classgridfire_1_1_dynamic_engine.html" > DynamicEngine< / a > & engine, const Species & species, const fourdst::composition::Composition & comp, const double T9, const double rho)< / td > < / tr >
< tr class = "separator:a2fe2e0bd4b2d4b9e0c70cc4eb9d7c48f" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
< tr class = "memitem:a023dc09e48b62e3f93f9a8b70cb2c63f" id = "r_a023dc09e48b62e3f93f9a8b70cb2c63f" > < td class = "memItemLeft" align = "right" valign = "top" > double  < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#a023dc09e48b62e3f93f9a8b70cb2c63f" > calculateDestructionRateConstant< / a > (const < a class = "el" href = "classgridfire_1_1_dynamic_engine.html" > DynamicEngine< / a > & engine, const Species & species, const Composition & comp, const double T9, const double rho)< / td > < / tr >
< tr class = "separator:a023dc09e48b62e3f93f9a8b70cb2c63f" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
< tr class = "memitem:a553717597efebcea94232a4a1d80e31d" id = "r_a553717597efebcea94232a4a1d80e31d" > < td class = "memItemLeft" align = "right" valign = "top" > double  < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#a553717597efebcea94232a4a1d80e31d" > calculateCreationRate< / a > (const < a class = "el" href = "classgridfire_1_1_dynamic_engine.html" > DynamicEngine< / a > & engine, const Species & species, const Composition & comp, const double T9, const double rho)< / td > < / tr >
< tr class = "separator:a553717597efebcea94232a4a1d80e31d" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
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< tr class = "memitem:a8b245f261cd8d1711ae8d593b054cf98" id = "r_a8b245f261cd8d1711ae8d593b054cf98" > < td class = "memItemLeft" align = "right" valign = "top" > std::string  < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#a8b245f261cd8d1711ae8d593b054cf98" > trim_whitespace< / a > (const std::string & str)< / td > < / tr >
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< tr class = "heading" > < td colspan = "2" > < h2 class = "groupheader" > < a id = "var-members" name = "var-members" > < / a >
Variables< / h2 > < / td > < / tr >
< tr class = "memitem:ada3c137c014ecd8d06200fea2d1a9f50" id = "r_ada3c137c014ecd8d06200fea2d1a9f50" > < td class = "memItemLeft" align = "right" valign = "top" > static constexpr double  < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#ada3c137c014ecd8d06200fea2d1a9f50" > MIN_DENSITY_THRESHOLD< / a > = 1e-18< / td > < / tr >
< tr class = "memdesc:ada3c137c014ecd8d06200fea2d1a9f50" > < td class = "mdescLeft" >   < / td > < td class = "mdescRight" > Minimum density threshold below which reactions are ignored. < br / > < / td > < / tr >
< tr class = "separator:ada3c137c014ecd8d06200fea2d1a9f50" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
< tr class = "memitem:a96c062f94713921e5d7568ecedcdcb06" id = "r_a96c062f94713921e5d7568ecedcdcb06" > < td class = "memItemLeft" align = "right" valign = "top" > static constexpr double  < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#a96c062f94713921e5d7568ecedcdcb06" > MIN_ABUNDANCE_THRESHOLD< / a > = 1e-18< / td > < / tr >
< tr class = "memdesc:a96c062f94713921e5d7568ecedcdcb06" > < td class = "mdescLeft" >   < / td > < td class = "mdescRight" > Minimum abundance threshold below which species are ignored. < br / > < / td > < / tr >
< tr class = "separator:a96c062f94713921e5d7568ecedcdcb06" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
< tr class = "memitem:ae01b1738df1921db565bcbd68dd6cf64" id = "r_ae01b1738df1921db565bcbd68dd6cf64" > < td class = "memItemLeft" align = "right" valign = "top" > static constexpr double  < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#ae01b1738df1921db565bcbd68dd6cf64" > MIN_JACOBIAN_THRESHOLD< / a > = 1e-24< / td > < / tr >
< tr class = "memdesc:ae01b1738df1921db565bcbd68dd6cf64" > < td class = "mdescLeft" >   < / td > < td class = "mdescRight" > Minimum value for Jacobian matrix entries. < br / > < / td > < / tr >
< tr class = "separator:ae01b1738df1921db565bcbd68dd6cf64" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
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< tr class = "memitem:a02be158966bf82a91b159b7a962c3fa5" id = "r_a02be158966bf82a91b159b7a962c3fa5" > < td class = "memItemLeft" align = "right" valign = "top" > std::map< < a class = "el" href = "#a8bea3d74f35d640e693fa398e9b3e154" > PrimingReportStatus< / a > , std::string >   < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#a02be158966bf82a91b159b7a962c3fa5" > PrimingReportStatusStrings< / a > < / td > < / tr >
< tr class = "memdesc:a02be158966bf82a91b159b7a962c3fa5" > < td class = "mdescLeft" >   < / td > < td class = "mdescRight" > Mapping from < a class = "el" href = "#a8bea3d74f35d640e693fa398e9b3e154" title = "Enumerates outcome codes for a network priming operation." > PrimingReportStatus< / a > codes to human-readable strings. < br / > < / td > < / tr >
< tr class = "separator:a02be158966bf82a91b159b7a962c3fa5" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
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< tr class = "memitem:a4e9cabad30b57d636c2f0d73d8cc6bb4" id = "r_a4e9cabad30b57d636c2f0d73d8cc6bb4" > < td class = "memItemLeft" align = "right" valign = "top" > static std::unordered_map< < a class = "el" href = "#a3f3d6b3f9742b70e62049ccefbb60f37" > NetworkFormat< / a > , std::string >   < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#a4e9cabad30b57d636c2f0d73d8cc6bb4" > FormatStringLookup< / a > < / td > < / tr >
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< h2 class = "groupheader" > Typedef Documentation< / h2 >
< a id = "a1121d0b2d005195333412559fa29d3cc" name = "a1121d0b2d005195333412559fa29d3cc" > < / a >
< h2 class = "memtitle" > < span class = "permalink" > < a href = "#a1121d0b2d005195333412559fa29d3cc" > ◆   < / a > < / span > ADDouble< / h2 >
< div class = "memitem" >
< div class = "memproto" >
< table class = "memname" >
< tr >
< td class = "memname" > typedef CppAD::AD< double> < a class = "el" href = "#a1121d0b2d005195333412559fa29d3cc" > gridfire::ADDouble< / a > < / td >
< / tr >
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< p > Alias for CppAD AD type for double precision. < / p >
< p > This alias simplifies the use of the CppAD automatic differentiation type. < / p >
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< h2 class = "memtitle" > < span class = "permalink" > < a href = "#a3b1f70dc7ff5b501809330a97079e4f6" > ◆   < / a > < / span > BuildDepthType< / h2 >
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< td class = "memname" > using < a class = "el" href = "#a3b1f70dc7ff5b501809330a97079e4f6" > gridfire::BuildDepthType< / a > = std::variant< < a class = "el" href = "#a0210bd2e07538932135a56b62b8ddb57" > NetworkBuildDepth< / a > , int> < / td >
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< p > Variant specifying either a predefined < a class = "el" href = "#a0210bd2e07538932135a56b62b8ddb57" title = "Specifies supported depths for building the reaction network." > NetworkBuildDepth< / a > or a custom integer depth. < / p >
< dl class = "section pre" > < dt > Precondition< / dt > < dd > If using the integer alternative, the value must be > = 0 or -1 to indicate a full build. < / dd > < / dl >
< dl class = "section post" > < dt > Postcondition< / dt > < dd > The network builder will interpret and apply the specified depth to control reaction expansion. < / dd > < / dl >
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< a id = "a898dfe22579e649935645cbd6f073178" name = "a898dfe22579e649935645cbd6f073178" > < / a >
< h2 class = "memtitle" > < span class = "permalink" > < a href = "#a898dfe22579e649935645cbd6f073178" > ◆   < / a > < / span > SparsityPattern< / h2 >
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< td class = "memname" > using < a class = "el" href = "#a898dfe22579e649935645cbd6f073178" > gridfire::SparsityPattern< / a > = std::vector< std::pair< size_t, size_t> > < / td >
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< h2 class = "groupheader" > Enumeration Type Documentation< / h2 >
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< a id = "a0210bd2e07538932135a56b62b8ddb57" name = "a0210bd2e07538932135a56b62b8ddb57" > < / a >
< h2 class = "memtitle" > < span class = "permalink" > < a href = "#a0210bd2e07538932135a56b62b8ddb57" > ◆   < / a > < / span > NetworkBuildDepth< / h2 >
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< td class = "memname" > enum class < a class = "el" href = "#a0210bd2e07538932135a56b62b8ddb57" > gridfire::NetworkBuildDepth< / a > < / td >
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< p > Specifies supported depths for building the reaction network. < / p >
< p > Values:< / p > < ul >
< li > Full: Build the complete network (infinite depth).< / li >
< li > Shallow: Build only direct reactions (depth = 1).< / li >
< li > SecondOrder: Include reactions up to second order (depth = 2).< / li >
< li > ThirdOrder: Include reactions up to third order (depth = 3).< / li >
< li > FourthOrder: Include reactions up to fourth order (depth = 4).< / li >
< li > FifthOrder: Include reactions up to fifth order (depth = 5).< / li >
< / ul >
< dl class = "section note" > < dt > Note< / dt > < dd > For custom build depths, see < a class = "el" href = "#a3b1f70dc7ff5b501809330a97079e4f6" title = "Variant specifying either a predefined NetworkBuildDepth or a custom integer depth." > BuildDepthType< / a > . < / dd > < / dl >
< table class = "fieldtable" >
< tr > < th colspan = "2" > Enumerator< / th > < / tr > < tr > < td class = "fieldname" > < a id = "a0210bd2e07538932135a56b62b8ddb57abbd47109890259c0127154db1af26c75" name = "a0210bd2e07538932135a56b62b8ddb57abbd47109890259c0127154db1af26c75" > < / a > Full  < / td > < td class = "fielddoc" > < / td > < / tr >
< tr > < td class = "fieldname" > < a id = "a0210bd2e07538932135a56b62b8ddb57a928d0f1285ee7d36c1c2fa1b1b7a164c" name = "a0210bd2e07538932135a56b62b8ddb57a928d0f1285ee7d36c1c2fa1b1b7a164c" > < / a > Shallow  < / td > < td class = "fielddoc" > < / td > < / tr >
< tr > < td class = "fieldname" > < a id = "a0210bd2e07538932135a56b62b8ddb57a264572d66aed5373d19dc80c7cde1f46" name = "a0210bd2e07538932135a56b62b8ddb57a264572d66aed5373d19dc80c7cde1f46" > < / a > SecondOrder  < / td > < td class = "fielddoc" > < / td > < / tr >
< tr > < td class = "fieldname" > < a id = "a0210bd2e07538932135a56b62b8ddb57a3fc719e07f9f63e7f11a3d4fb74b476f" name = "a0210bd2e07538932135a56b62b8ddb57a3fc719e07f9f63e7f11a3d4fb74b476f" > < / a > ThirdOrder  < / td > < td class = "fielddoc" > < / td > < / tr >
< tr > < td class = "fieldname" > < a id = "a0210bd2e07538932135a56b62b8ddb57a100e3bf0197221c19b222badf42aa964" name = "a0210bd2e07538932135a56b62b8ddb57a100e3bf0197221c19b222badf42aa964" > < / a > FourthOrder  < / td > < td class = "fielddoc" > < / td > < / tr >
< tr > < td class = "fieldname" > < a id = "a0210bd2e07538932135a56b62b8ddb57a5105376c2b90747e00bed5bf2953dd56" name = "a0210bd2e07538932135a56b62b8ddb57a5105376c2b90747e00bed5bf2953dd56" > < / a > FifthOrder  < / td > < td class = "fielddoc" > < / td > < / tr >
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< a id = "a3f3d6b3f9742b70e62049ccefbb60f37" name = "a3f3d6b3f9742b70e62049ccefbb60f37" > < / a >
< h2 class = "memtitle" > < span class = "permalink" > < a href = "#a3f3d6b3f9742b70e62049ccefbb60f37" > ◆   < / a > < / span > NetworkFormat< / h2 >
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< td class = "memname" > enum < a class = "el" href = "#a3f3d6b3f9742b70e62049ccefbb60f37" > gridfire::NetworkFormat< / a > < / td >
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< tr > < th colspan = "2" > Enumerator< / th > < / tr > < tr > < td class = "fieldname" > < a id = "a3f3d6b3f9742b70e62049ccefbb60f37a1fc7adf719c40457abfdb8334675faea" name = "a3f3d6b3f9742b70e62049ccefbb60f37a1fc7adf719c40457abfdb8334675faea" > < / a > APPROX8  < / td > < td class = "fielddoc" > < p > Approx8 nuclear reaction network format. < / p >
< / td > < / tr >
< tr > < td class = "fieldname" > < a id = "a3f3d6b3f9742b70e62049ccefbb60f37a9b8db7b445ae4f1bd114caa42a583182" name = "a3f3d6b3f9742b70e62049ccefbb60f37a9b8db7b445ae4f1bd114caa42a583182" > < / a > REACLIB  < / td > < td class = "fielddoc" > < p > General REACLIB nuclear reaction network format. < / p >
< / td > < / tr >
< tr > < td class = "fieldname" > < a id = "a3f3d6b3f9742b70e62049ccefbb60f37aac700abde5f6ff8b7328193eb19697b2" name = "a3f3d6b3f9742b70e62049ccefbb60f37aac700abde5f6ff8b7328193eb19697b2" > < / a > UNKNOWN  < / td > < td class = "fielddoc" > < / td > < / tr >
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< a id = "a8bea3d74f35d640e693fa398e9b3e154" name = "a8bea3d74f35d640e693fa398e9b3e154" > < / a >
< h2 class = "memtitle" > < span class = "permalink" > < a href = "#a8bea3d74f35d640e693fa398e9b3e154" > ◆   < / a > < / span > PrimingReportStatus< / h2 >
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< td class = "memname" > enum class < a class = "el" href = "#a8bea3d74f35d640e693fa398e9b3e154" > gridfire::PrimingReportStatus< / a > < / td >
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< span class = "mlabels" > < span class = "mlabel strong" > strong< / span > < / span > < / td >
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< p > Enumerates outcome codes for a network priming operation. < / p >
< p > These status codes indicate the reason for success or failure of the priming process:< / p > < ul >
< li > FULL_SUCCESS: Priming completed successfully with all species processed.< / li >
< li > NO_SPECIES_TO_PRIME: There were no species eligible for priming.< / li >
< li > MAX_ITERATIONS_REACHED: The algorithm reached its iteration limit without converging.< / li >
< li > FAILED_TO_FINALIZE_COMPOSITION: Unable to build a valid Composition object at end.< / li >
< li > FAILED_TO_FIND_CREATION_CHANNEL: No reaction path found to create the priming species.< / li >
< li > FAILED_TO_FIND_PRIMING_REACTIONS: No reactions containing the priming species were found.< / li >
< li > BASE_NETWORK_TOO_SHALLOW: The provided base network depth was insufficient for priming.< / li >
< / ul >
< dl class = "section see" > < dt > See also< / dt > < dd > < a class = "el" href = "structgridfire_1_1_priming_report.html" title = "Captures the result of a network priming operation." > PrimingReport< / a > for data associated with each status. < / dd > < / dl >
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< tr > < th colspan = "2" > Enumerator< / th > < / tr > < tr > < td class = "fieldname" > < a id = "a8bea3d74f35d640e693fa398e9b3e154a64d98633bac1de0eb2a539cbfd2a5c2a" name = "a8bea3d74f35d640e693fa398e9b3e154a64d98633bac1de0eb2a539cbfd2a5c2a" > < / a > FULL_SUCCESS  < / td > < td class = "fielddoc" > < / td > < / tr >
< tr > < td class = "fieldname" > < a id = "a8bea3d74f35d640e693fa398e9b3e154a708c14ec56942aa5f32e7bef1e29db45" name = "a8bea3d74f35d640e693fa398e9b3e154a708c14ec56942aa5f32e7bef1e29db45" > < / a > NO_SPECIES_TO_PRIME  < / td > < td class = "fielddoc" > < / td > < / tr >
< tr > < td class = "fieldname" > < a id = "a8bea3d74f35d640e693fa398e9b3e154a5afaf45bc4c02208d502d9c0c26d8287" name = "a8bea3d74f35d640e693fa398e9b3e154a5afaf45bc4c02208d502d9c0c26d8287" > < / a > MAX_ITERATIONS_REACHED  < / td > < td class = "fielddoc" > < / td > < / tr >
< tr > < td class = "fieldname" > < a id = "a8bea3d74f35d640e693fa398e9b3e154ae8870a753743b62c511c939eef95c93f" name = "a8bea3d74f35d640e693fa398e9b3e154ae8870a753743b62c511c939eef95c93f" > < / a > FAILED_TO_FINALIZE_COMPOSITION  < / td > < td class = "fielddoc" > < / td > < / tr >
< tr > < td class = "fieldname" > < a id = "a8bea3d74f35d640e693fa398e9b3e154a9870268bdece09274aea75557a19158a" name = "a8bea3d74f35d640e693fa398e9b3e154a9870268bdece09274aea75557a19158a" > < / a > FAILED_TO_FIND_CREATION_CHANNEL  < / td > < td class = "fielddoc" > < / td > < / tr >
< tr > < td class = "fieldname" > < a id = "a8bea3d74f35d640e693fa398e9b3e154a186367e42446c004076290ca7913d931" name = "a8bea3d74f35d640e693fa398e9b3e154a186367e42446c004076290ca7913d931" > < / a > FAILED_TO_FIND_PRIMING_REACTIONS  < / td > < td class = "fielddoc" > < / td > < / tr >
< tr > < td class = "fieldname" > < a id = "a8bea3d74f35d640e693fa398e9b3e154ab837953f2841baabbae6bb5f2e43e71e" name = "a8bea3d74f35d640e693fa398e9b3e154ab837953f2841baabbae6bb5f2e43e71e" > < / a > BASE_NETWORK_TOO_SHALLOW  < / td > < td class = "fielddoc" > < / td > < / tr >
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< h2 class = "groupheader" > Function Documentation< / h2 >
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< a id = "a58a036e8883e75a8abd3e18798563f71" name = "a58a036e8883e75a8abd3e18798563f71" > < / a >
< h2 class = "memtitle" > < span class = "permalink" > < a href = "#a58a036e8883e75a8abd3e18798563f71" > ◆   < / a > < / span > build_nuclear_network()< / h2 >
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< td class = "memname" > < a class = "el" href = "classgridfire_1_1reaction_1_1_reaction_set.html" > ReactionSet< / a > gridfire::build_nuclear_network < / td >
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< td > (< / td >
< td class = "paramtype" > const Composition & < / td > < td class = "paramname" > < span class = "paramname" > < em > composition< / em > < / span > , < / td >
< / tr >
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< td class = "paramtype" > const < a class = "el" href = "classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html" > rates::weak::WeakRateInterpolator< / a > & < / td > < td class = "paramname" > < span class = "paramname" > < em > weak_interpolator< / em > < / span > , < / td >
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< td class = "paramtype" > < a class = "el" href = "#a3b1f70dc7ff5b501809330a97079e4f6" > BuildDepthType< / a > < / td > < td class = "paramname" > < span class = "paramname" > < em > maxLayers< / em > < / span > , < / td >
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< td class = "paramtype" > bool< / td > < td class = "paramname" > < span class = "paramname" > < em > reverse_reaclib< / em > < / span >   )< / td >
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< a id = "a384323338f13166d87c7ac047434bd38" name = "a384323338f13166d87c7ac047434bd38" > < / a >
< h2 class = "memtitle" > < span class = "permalink" > < a href = "#a384323338f13166d87c7ac047434bd38" > ◆   < / a > < / span > build_reaclib_nuclear_network()< / h2 >
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< td class = "memname" > < a class = "el" href = "classgridfire_1_1reaction_1_1_reaction_set.html" > reaction::ReactionSet< / a > gridfire::build_reaclib_nuclear_network < / td >
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< td > (< / td >
< td class = "paramtype" > const fourdst::composition::Composition & < / td > < td class = "paramname" > < span class = "paramname" > < em > composition< / em > < / span > , < / td >
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< td class = "paramtype" > const < a class = "el" href = "classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html" > rates::weak::WeakRateInterpolator< / a > & < / td > < td class = "paramname" > < span class = "paramname" > < em > weakInterpolator< / em > < / span > , < / td >
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< td class = "paramtype" > < a class = "el" href = "#a3b1f70dc7ff5b501809330a97079e4f6" > BuildDepthType< / a > < / td > < td class = "paramname" > < span class = "paramname" > < em > maxLayers< / em > < / span > < span class = "paramdefsep" > = < / span > < span class = "paramdefval" > < a class = "el" href = "#a0210bd2e07538932135a56b62b8ddb57abbd47109890259c0127154db1af26c75" > NetworkBuildDepth::Full< / a > < / span > , < / td >
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< td class = "paramtype" > bool< / td > < td class = "paramname" > < span class = "paramname" > < em > reverse< / em > < / span > < span class = "paramdefsep" > = < / span > < span class = "paramdefval" > false< / span >   )< / td >
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< p > Builds a nuclear reaction network from the Reaclib library based on an initial composition. < / p >
< p > Constructs a layered reaction network by collecting reactions up to the specified depth from the Reaclib dataset. Starting species are those with non-zero mass fractions in the input composition. Layers expand by including products of collected reactions until the depth limit. Optionally selects reverse reactions instead of forward.< / p >
< p > See implementation in < a class = "el" href = "construction_8cpp.html" > construction.cpp< / a > for details on the layering algorithm, logging, and performance.< / p >
< dl class = "params" > < dt > Parameters< / dt > < dd >
< table class = "params" >
< tr > < td class = "paramname" > composition< / td > < td > Mapping of isotopic species to their mass fractions; species with positive mass fraction seed the network. < / td > < / tr >
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< tr > < td class = "paramname" > weakInterpolator< / td > < td > < / td > < / tr >
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< tr > < td class = "paramname" > maxLayers< / td > < td > Variant specifying either a predefined < a class = "el" href = "#a0210bd2e07538932135a56b62b8ddb57" title = "Specifies supported depths for building the reaction network." > NetworkBuildDepth< / a > or a custom integer depth; negative depth (Full) collects all reactions, zero is invalid. < / td > < / tr >
< tr > < td class = "paramname" > reverse< / td > < td > If true, collects reverse reactions (decays or back-reactions); if false, uses forward reactions. < / td > < / tr >
< / table >
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< / dl >
< dl class = "section pre" > < dt > Precondition< / dt > < dd > composition must have at least one species with positive mass fraction. < / dd >
< dd >
Resolved integer depth from maxLayers must not be zero. < / dd > < / dl >
< dl class = "section post" > < dt > Postcondition< / dt > < dd > Returned network includes only reactions satisfying the depth and reverse criteria. < / dd > < / dl >
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< dl class = "section return" > < dt > Returns< / dt > < dd > A LogicalReactionSet encapsulating the collected reactions for graph-based engines. < / dd > < / dl >
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< dl class = "exception" > < dt > Exceptions< / dt > < dd >
< table class = "exception" >
< tr > < td class = "paramname" > std::logic_error< / td > < td > If the resolved network depth is zero (no reactions can be collected). < / td > < / tr >
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< a id = "a8995b949592d59850e45a3fd27306369" name = "a8995b949592d59850e45a3fd27306369" > < / a >
< h2 class = "memtitle" > < span class = "permalink" > < a href = "#a8995b949592d59850e45a3fd27306369" > ◆   < / a > < / span > calculateCreationRate() < span class = "overload" > [1/2]< / span > < / h2 >
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< td class = "memname" > double gridfire::calculateCreationRate < / td >
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< td class = "paramtype" > const < a class = "el" href = "classgridfire_1_1_dynamic_engine.html" > DynamicEngine< / a > & < / td > < td class = "paramname" > < span class = "paramname" > < em > engine< / em > < / span > , < / td >
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< td class = "paramkey" > < / td >
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< td class = "paramtype" > const fourdst::atomic::Species & < / td > < td class = "paramname" > < span class = "paramname" > < em > species< / em > < / span > , < / td >
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< td class = "paramtype" > const fourdst::composition::Composition & < / td > < td class = "paramname" > < span class = "paramname" > < em > composition< / em > < / span > , < / td >
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< / tr >
< tr >
< td class = "paramkey" > < / td >
< td > < / td >
< td class = "paramtype" > double< / td > < td class = "paramname" > < span class = "paramname" > < em > T9< / em > < / span > , < / td >
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< td class = "paramkey" > < / td >
< td > < / td >
< td class = "paramtype" > double< / td > < td class = "paramname" > < span class = "paramname" > < em > rho< / em > < / span >   )< / td >
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< / div > < div class = "memdoc" >
< p > Computes the creation rate for a specific species. < / p >
< p > Sums molar reaction flows for all reactions where the species appears as a product (positive stoichiometry).< / p >
< dl class = "params" > < dt > Parameters< / dt > < dd >
< table class = "params" >
< tr > < td class = "paramname" > engine< / td > < td > < a class = "el" href = "classgridfire_1_1_engine.html" title = "Abstract base class for a reaction network engine." > Engine< / a > providing the current set of network reactions and flow calculations. < / td > < / tr >
< tr > < td class = "paramname" > species< / td > < td > The atomic species whose creation rate is computed. < / td > < / tr >
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< tr > < td class = "paramname" > composition< / td > < td > Composition object containing current abundances. < / td > < / tr >
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< tr > < td class = "paramname" > T9< / td > < td > Temperature in units of 10^9 K. < / td > < / tr >
< tr > < td class = "paramname" > rho< / td > < td > Density of the medium. < / td > < / tr >
< / table >
< / dd >
< / dl >
< dl class = "section pre" > < dt > Precondition< / dt > < dd > Y.size() matches engine.getNetworkReactions().size() mapping species order. < / dd > < / dl >
< dl class = "section post" > < dt > Postcondition< / dt > < dd > Returned creation rate is non-negative. < / dd > < / dl >
< dl class = "section return" > < dt > Returns< / dt > < dd > Sum of stoichiometry-weighted creation flows for the species. < / dd > < / dl >
< / div >
< / div >
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< a id = "a553717597efebcea94232a4a1d80e31d" name = "a553717597efebcea94232a4a1d80e31d" > < / a >
< h2 class = "memtitle" > < span class = "permalink" > < a href = "#a553717597efebcea94232a4a1d80e31d" > ◆   < / a > < / span > calculateCreationRate() < span class = "overload" > [2/2]< / span > < / h2 >
< div class = "memitem" >
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< td class = "memname" > double gridfire::calculateCreationRate < / td >
< td > (< / td >
< td class = "paramtype" > const < a class = "el" href = "classgridfire_1_1_dynamic_engine.html" > DynamicEngine< / a > & < / td > < td class = "paramname" > < span class = "paramname" > < em > engine< / em > < / span > , < / td >
< / tr >
< tr >
< td class = "paramkey" > < / td >
< td > < / td >
< td class = "paramtype" > const Species & < / td > < td class = "paramname" > < span class = "paramname" > < em > species< / em > < / span > , < / td >
< / tr >
< tr >
< td class = "paramkey" > < / td >
< td > < / td >
< td class = "paramtype" > const Composition & < / td > < td class = "paramname" > < span class = "paramname" > < em > comp< / em > < / span > , < / td >
< / tr >
< tr >
< td class = "paramkey" > < / td >
< td > < / td >
< td class = "paramtype" > const double< / td > < td class = "paramname" > < span class = "paramname" > < em > T9< / em > < / span > , < / td >
< / tr >
< tr >
< td class = "paramkey" > < / td >
< td > < / td >
< td class = "paramtype" > const double< / td > < td class = "paramname" > < span class = "paramname" > < em > rho< / em > < / span >   )< / td >
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< a id = "ab6e14208fad69f4031411a9346c12397" name = "ab6e14208fad69f4031411a9346c12397" > < / a >
< h2 class = "memtitle" > < span class = "permalink" > < a href = "#ab6e14208fad69f4031411a9346c12397" > ◆   < / a > < / span > calculateDestructionRateConstant() < span class = "overload" > [1/2]< / span > < / h2 >
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< td class = "memname" > double gridfire::calculateDestructionRateConstant < / td >
< td > (< / td >
< td class = "paramtype" > const < a class = "el" href = "classgridfire_1_1_dynamic_engine.html" > DynamicEngine< / a > & < / td > < td class = "paramname" > < span class = "paramname" > < em > engine< / em > < / span > , < / td >
< / tr >
< tr >
< td class = "paramkey" > < / td >
< td > < / td >
< td class = "paramtype" > const fourdst::atomic::Species & < / td > < td class = "paramname" > < span class = "paramname" > < em > species< / em > < / span > , < / td >
< / tr >
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< td class = "paramkey" > < / td >
< td > < / td >
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< td class = "paramtype" > const fourdst::composition::Composition & < / td > < td class = "paramname" > < span class = "paramname" > < em > composition< / em > < / span > , < / td >
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< / tr >
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< td class = "paramkey" > < / td >
< td > < / td >
< td class = "paramtype" > double< / td > < td class = "paramname" > < span class = "paramname" > < em > T9< / em > < / span > , < / td >
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< td class = "paramkey" > < / td >
< td > < / td >
< td class = "paramtype" > double< / td > < td class = "paramname" > < span class = "paramname" > < em > rho< / em > < / span >   )< / td >
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< / table >
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< p > Computes the destruction rate constant for a specific species. < / p >
< p > Calculates the sum of molar reaction flows for all reactions where the species is a reactant (negative stoichiometry) after scaling its abundance to unity.< / p >
< dl class = "params" > < dt > Parameters< / dt > < dd >
< table class = "params" >
< tr > < td class = "paramname" > engine< / td > < td > < a class = "el" href = "classgridfire_1_1_engine.html" title = "Abstract base class for a reaction network engine." > Engine< / a > providing the current set of network reactions and flow calculations. < / td > < / tr >
< tr > < td class = "paramname" > species< / td > < td > The atomic species whose destruction rate is computed. < / td > < / tr >
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< tr > < td class = "paramname" > composition< / td > < td > Current composition providing abundances for all species. < / td > < / tr >
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< tr > < td class = "paramname" > T9< / td > < td > Temperature in units of 10^9 K. < / td > < / tr >
< tr > < td class = "paramname" > rho< / td > < td > Density of the medium. < / td > < / tr >
< / table >
< / dd >
< / dl >
< dl class = "section pre" > < dt > Precondition< / dt > < dd > Y.size() matches engine.getNetworkReactions().size() mapping species order. < / dd > < / dl >
< dl class = "section post" > < dt > Postcondition< / dt > < dd > Returned rate constant is non-negative. < / dd > < / dl >
< dl class = "section return" > < dt > Returns< / dt > < dd > Sum of absolute stoichiometry-weighted destruction flows for the species. < / dd > < / dl >
< / div >
< / div >
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< a id = "a023dc09e48b62e3f93f9a8b70cb2c63f" name = "a023dc09e48b62e3f93f9a8b70cb2c63f" > < / a >
< h2 class = "memtitle" > < span class = "permalink" > < a href = "#a023dc09e48b62e3f93f9a8b70cb2c63f" > ◆   < / a > < / span > calculateDestructionRateConstant() < span class = "overload" > [2/2]< / span > < / h2 >
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< td class = "memname" > double gridfire::calculateDestructionRateConstant < / td >
< td > (< / td >
< td class = "paramtype" > const < a class = "el" href = "classgridfire_1_1_dynamic_engine.html" > DynamicEngine< / a > & < / td > < td class = "paramname" > < span class = "paramname" > < em > engine< / em > < / span > , < / td >
< / tr >
< tr >
< td class = "paramkey" > < / td >
< td > < / td >
< td class = "paramtype" > const Species & < / td > < td class = "paramname" > < span class = "paramname" > < em > species< / em > < / span > , < / td >
< / tr >
< tr >
< td class = "paramkey" > < / td >
< td > < / td >
< td class = "paramtype" > const Composition & < / td > < td class = "paramname" > < span class = "paramname" > < em > comp< / em > < / span > , < / td >
< / tr >
< tr >
< td class = "paramkey" > < / td >
< td > < / td >
< td class = "paramtype" > const double< / td > < td class = "paramname" > < span class = "paramname" > < em > T9< / em > < / span > , < / td >
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< td class = "paramkey" > < / td >
< td > < / td >
< td class = "paramtype" > const double< / td > < td class = "paramname" > < span class = "paramname" > < em > rho< / em > < / span >   )< / td >
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< a id = "a2fe2e0bd4b2d4b9e0c70cc4eb9d7c48f" name = "a2fe2e0bd4b2d4b9e0c70cc4eb9d7c48f" > < / a >
< h2 class = "memtitle" > < span class = "permalink" > < a href = "#a2fe2e0bd4b2d4b9e0c70cc4eb9d7c48f" > ◆   < / a > < / span > findDominantCreationChannel()< / h2 >
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< td class = "memname" > const < a class = "el" href = "classgridfire_1_1reaction_1_1_reaction.html" > reaction::Reaction< / a > * gridfire::findDominantCreationChannel < / td >
< td > (< / td >
< td class = "paramtype" > const < a class = "el" href = "classgridfire_1_1_dynamic_engine.html" > DynamicEngine< / a > & < / td > < td class = "paramname" > < span class = "paramname" > < em > engine< / em > < / span > , < / td >
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< td class = "paramkey" > < / td >
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< td class = "paramtype" > const Species & < / td > < td class = "paramname" > < span class = "paramname" > < em > species< / em > < / span > , < / td >
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< td class = "paramkey" > < / td >
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< td class = "paramtype" > const fourdst::composition::Composition & < / td > < td class = "paramname" > < span class = "paramname" > < em > comp< / em > < / span > , < / td >
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< / tr >
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< a id = "a3cd451f4b7a7bc7c2d7007ebb343e9ac" name = "a3cd451f4b7a7bc7c2d7007ebb343e9ac" > < / a >
< h2 class = "memtitle" > < span class = "permalink" > < a href = "#a3cd451f4b7a7bc7c2d7007ebb343e9ac" > ◆   < / a > < / span > primeNetwork()< / h2 >
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< td class = "memname" > < a class = "el" href = "structgridfire_1_1_priming_report.html" > PrimingReport< / a > gridfire::primeNetwork < / td >
< td > (< / td >
< td class = "paramtype" > const < a class = "el" href = "structgridfire_1_1_net_in.html" > NetIn< / a > & < / td > < td class = "paramname" > < span class = "paramname" > < em > netIn< / em > < / span > , < / td >
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< td class = "paramtype" > < a class = "el" href = "classgridfire_1_1_dynamic_engine.html" > DynamicEngine< / a > & < / td > < td class = "paramname" > < span class = "paramname" > < em > engine< / em > < / span >   )< / td >
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< p > Primes absent species in the network to their equilibrium abundances. < / p >
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< p > Primes absent species in the network to their equilibrium abundances using a robust, two-stage approach.< / p >
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< p > Executes a network priming algorithm that iteratively rebuilds the reaction network, calculates equilibrium mass fractions for species with zero initial abundance, and applies mass transfers based on reaction flows.< / p >
< p > Refer to < a class = "el" href = "priming_8cpp.html" > priming.cpp< / a > for implementation details on logging, algorithmic steps, and error handling.< / p >
< dl class = "params" > < dt > Parameters< / dt > < dd >
< table class = "params" >
< tr > < td class = "paramname" > netIn< / td > < td > Input network data containing initial composition, temperature, and density. < / td > < / tr >
< tr > < td class = "paramname" > engine< / td > < td > < a class = "el" href = "classgridfire_1_1_dynamic_engine.html" title = "Abstract class for engines supporting Jacobian and stoichiometry operations." > DynamicEngine< / a > used to build and evaluate the reaction network. < / td > < / tr >
< / table >
< / dd >
< / dl >
< dl class = "section pre" > < dt > Precondition< / dt > < dd > netIn.composition defines species and their mass fractions; engine is constructed with a valid network. < / dd > < / dl >
< dl class = "section post" > < dt > Postcondition< / dt > < dd > engine.networkReactions restored to its initial state; returned report contains primedComposition, massFractionChanges for each species, success flag, and status code. < / dd > < / dl >
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< dl class = "section return" > < dt > Returns< / dt > < dd > < a class = "el" href = "structgridfire_1_1_priming_report.html" title = "Captures the result of a network priming operation." > PrimingReport< / a > encapsulating the results of the priming operation.< / dd > < / dl >
< p > This function implements a robust network priming algorithm that avoids the pitfalls of sequential, one-by-one priming. The previous, brittle method could allow an early priming reaction to consume all of a shared reactant, starving later reactions. This new, two-stage method ensures that all priming reactions are considered collectively, competing for the same limited pool of initial reactants in a physically consistent manner.< / p >
< p > The algorithm proceeds in three main stages:< / p > < ol type = "1" >
< li > < b > Calculation Stage:< / b > It first loops through all species that need priming. For each one, it calculates its theoretical equilibrium mass fraction and identifies the dominant creation channel. Crucially, it < em > does not< / em > modify any abundances at this stage. Instead, it stores these calculations as a list of "mass transfer requests".< / li >
< li > < b > Collective Scaling Stage:< / b > It then processes the full list of requests to determine the total "debit" required from each reactant. By comparing these total debits to the initially available mass of each reactant, it calculates a single, global < code > scalingFactor< / code > . If any reactant is overdrawn, this factor will be less than 1.0, ensuring that no reactant's abundance can go negative.< / li >
< li > < b > Application Stage:< / b > Finally, it loops through the requests again, applying the mass transfers. Each calculated equilibrium mass fraction and corresponding reactant debit is multiplied by the global < code > scalingFactor< / code > before being applied to the final composition. This ensures that if resources are limited, all primed species are scaled down proportionally.< / li >
< / ol >
< dl class = "params" > < dt > Parameters< / dt > < dd >
< table class = "params" >
< tr > < td class = "paramname" > netIn< / td > < td > Input network data containing initial composition, temperature, and density. < / td > < / tr >
< tr > < td class = "paramname" > engine< / td > < td > < a class = "el" href = "classgridfire_1_1_dynamic_engine.html" title = "Abstract class for engines supporting Jacobian and stoichiometry operations." > DynamicEngine< / a > used to build and evaluate the reaction network. < / td > < / tr >
< / table >
< / dd >
< / dl >
< dl class = "section return" > < dt > Returns< / dt > < dd > < a class = "el" href = "structgridfire_1_1_priming_report.html" title = "Captures the result of a network priming operation." > PrimingReport< / a > encapsulating the results of the priming operation, including the new robustly primed composition. < / dd > < / dl >
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< / div >
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< a id = "a8b245f261cd8d1711ae8d593b054cf98" name = "a8b245f261cd8d1711ae8d593b054cf98" > < / a >
< h2 class = "memtitle" > < span class = "permalink" > < a href = "#a8b245f261cd8d1711ae8d593b054cf98" > ◆   < / a > < / span > trim_whitespace()< / h2 >
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< td class = "memname" > std::string gridfire::trim_whitespace < / td >
< td > (< / td >
< td class = "paramtype" > const std::string & < / td > < td class = "paramname" > < span class = "paramname" > < em > str< / em > < / span > < / td > < td > )< / td >
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< h2 class = "groupheader" > Variable Documentation< / h2 >
< a id = "a4e9cabad30b57d636c2f0d73d8cc6bb4" name = "a4e9cabad30b57d636c2f0d73d8cc6bb4" > < / a >
< h2 class = "memtitle" > < span class = "permalink" > < a href = "#a4e9cabad30b57d636c2f0d73d8cc6bb4" > ◆   < / a > < / span > FormatStringLookup< / h2 >
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< td class = "memname" > std::unordered_map< < a class = "el" href = "#a3f3d6b3f9742b70e62049ccefbb60f37" > NetworkFormat< / a > , std::string> gridfire::FormatStringLookup< / td >
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< span class = "mlabels" > < span class = "mlabel inline" > inline< / span > < span class = "mlabel static" > static< / span > < / span > < / td >
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< b > Initial value:< / b > < div class = "fragment" > < div class = "line" > = {< / div >
< div class = "line" > {< a class = "code hl_enumvalue" href = "#a3f3d6b3f9742b70e62049ccefbb60f37a1fc7adf719c40457abfdb8334675faea" > APPROX8< / a > , < span class = "stringliteral" > " Approx8" < / span > },< / div >
< div class = "line" > {< a class = "code hl_enumvalue" href = "#a3f3d6b3f9742b70e62049ccefbb60f37a9b8db7b445ae4f1bd114caa42a583182" > REACLIB< / a > , < span class = "stringliteral" > " REACLIB" < / span > },< / div >
< div class = "line" > {< a class = "code hl_enumvalue" href = "#a3f3d6b3f9742b70e62049ccefbb60f37aac700abde5f6ff8b7328193eb19697b2" > UNKNOWN< / a > , < span class = "stringliteral" > " Unknown" < / span > }< / div >
< div class = "line" > }< / div >
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< div class = "ttc" id = "anamespacegridfire_html_a3f3d6b3f9742b70e62049ccefbb60f37a1fc7adf719c40457abfdb8334675faea" > < div class = "ttname" > < a href = "#a3f3d6b3f9742b70e62049ccefbb60f37a1fc7adf719c40457abfdb8334675faea" > gridfire::APPROX8< / a > < / div > < div class = "ttdeci" > @ APPROX8< / div > < div class = "ttdoc" > Approx8 nuclear reaction network format.< / div > < div class = "ttdef" > < b > Definition< / b > network.h:40< / div > < / div >
< div class = "ttc" id = "anamespacegridfire_html_a3f3d6b3f9742b70e62049ccefbb60f37a9b8db7b445ae4f1bd114caa42a583182" > < div class = "ttname" > < a href = "#a3f3d6b3f9742b70e62049ccefbb60f37a9b8db7b445ae4f1bd114caa42a583182" > gridfire::REACLIB< / a > < / div > < div class = "ttdeci" > @ REACLIB< / div > < div class = "ttdoc" > General REACLIB nuclear reaction network format.< / div > < div class = "ttdef" > < b > Definition< / b > network.h:41< / div > < / div >
< div class = "ttc" id = "anamespacegridfire_html_a3f3d6b3f9742b70e62049ccefbb60f37aac700abde5f6ff8b7328193eb19697b2" > < div class = "ttname" > < a href = "#a3f3d6b3f9742b70e62049ccefbb60f37aac700abde5f6ff8b7328193eb19697b2" > gridfire::UNKNOWN< / a > < / div > < div class = "ttdeci" > @ UNKNOWN< / div > < div class = "ttdef" > < b > Definition< / b > network.h:42< / div > < / div >
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< h2 class = "memtitle" > < span class = "permalink" > < a href = "#a96c062f94713921e5d7568ecedcdcb06" > ◆   < / a > < / span > MIN_ABUNDANCE_THRESHOLD< / h2 >
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< td class = "memname" > double gridfire::MIN_ABUNDANCE_THRESHOLD = 1e-18< / td >
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< p > Minimum abundance threshold below which species are ignored. < / p >
< p > Species with abundances below this threshold are treated as zero in reaction rate calculations. This helps to improve performance by avoiding unnecessary calculations for trace species. < / p >
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< a id = "ada3c137c014ecd8d06200fea2d1a9f50" name = "ada3c137c014ecd8d06200fea2d1a9f50" > < / a >
< h2 class = "memtitle" > < span class = "permalink" > < a href = "#ada3c137c014ecd8d06200fea2d1a9f50" > ◆   < / a > < / span > MIN_DENSITY_THRESHOLD< / h2 >
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< td class = "memname" > double gridfire::MIN_DENSITY_THRESHOLD = 1e-18< / td >
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< p > Minimum density threshold below which reactions are ignored. < / p >
< p > Reactions are not calculated if the density falls below this threshold. This helps to improve performance by avoiding unnecessary calculations in very low-density regimes. < / p >
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< h2 class = "memtitle" > < span class = "permalink" > < a href = "#ae01b1738df1921db565bcbd68dd6cf64" > ◆   < / a > < / span > MIN_JACOBIAN_THRESHOLD< / h2 >
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< td class = "memname" > double gridfire::MIN_JACOBIAN_THRESHOLD = 1e-24< / td >
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< p > Minimum value for Jacobian matrix entries. < / p >
< p > Jacobian matrix entries with absolute values below this threshold are treated as zero to maintain sparsity and improve performance. < / p >
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< h2 class = "memtitle" > < span class = "permalink" > < a href = "#a02be158966bf82a91b159b7a962c3fa5" > ◆   < / a > < / span > PrimingReportStatusStrings< / h2 >
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< td class = "memname" > std::map< < a class = "el" href = "#a8bea3d74f35d640e693fa398e9b3e154" > PrimingReportStatus< / a > , std::string> gridfire::PrimingReportStatusStrings< / td >
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< b > Initial value:< / b > < div class = "fragment" > < div class = "line" > = {< / div >
< div class = "line" > {< a class = "code hl_enumvalue" href = "#a8bea3d74f35d640e693fa398e9b3e154a64d98633bac1de0eb2a539cbfd2a5c2a" > PrimingReportStatus::FULL_SUCCESS< / a > , < span class = "stringliteral" > " Full Success" < / span > },< / div >
< div class = "line" > {< a class = "code hl_enumvalue" href = "#a8bea3d74f35d640e693fa398e9b3e154a708c14ec56942aa5f32e7bef1e29db45" > PrimingReportStatus::NO_SPECIES_TO_PRIME< / a > , < span class = "stringliteral" > " No Species to Prime" < / span > },< / div >
< div class = "line" > {< a class = "code hl_enumvalue" href = "#a8bea3d74f35d640e693fa398e9b3e154a5afaf45bc4c02208d502d9c0c26d8287" > PrimingReportStatus::MAX_ITERATIONS_REACHED< / a > , < span class = "stringliteral" > " Max Iterations Reached" < / span > },< / div >
< div class = "line" > {< a class = "code hl_enumvalue" href = "#a8bea3d74f35d640e693fa398e9b3e154ae8870a753743b62c511c939eef95c93f" > PrimingReportStatus::FAILED_TO_FINALIZE_COMPOSITION< / a > , < span class = "stringliteral" > " Failed to Finalize Composition" < / span > },< / div >
< div class = "line" > {< a class = "code hl_enumvalue" href = "#a8bea3d74f35d640e693fa398e9b3e154a9870268bdece09274aea75557a19158a" > PrimingReportStatus::FAILED_TO_FIND_CREATION_CHANNEL< / a > , < span class = "stringliteral" > " Failed to Find Creation Channel" < / span > },< / div >
< div class = "line" > {< a class = "code hl_enumvalue" href = "#a8bea3d74f35d640e693fa398e9b3e154a186367e42446c004076290ca7913d931" > PrimingReportStatus::FAILED_TO_FIND_PRIMING_REACTIONS< / a > , < span class = "stringliteral" > " Failed to Find Priming Reactions" < / span > },< / div >
< div class = "line" > {< a class = "code hl_enumvalue" href = "#a8bea3d74f35d640e693fa398e9b3e154ab837953f2841baabbae6bb5f2e43e71e" > PrimingReportStatus::BASE_NETWORK_TOO_SHALLOW< / a > , < span class = "stringliteral" > " Base Network Too Shallow" < / span > }< / div >
< div class = "line" > }< / div >
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< div class = "ttc" id = "anamespacegridfire_html_a8bea3d74f35d640e693fa398e9b3e154a186367e42446c004076290ca7913d931" > < div class = "ttname" > < a href = "#a8bea3d74f35d640e693fa398e9b3e154a186367e42446c004076290ca7913d931" > gridfire::PrimingReportStatus::FAILED_TO_FIND_PRIMING_REACTIONS< / a > < / div > < div class = "ttdeci" > @ FAILED_TO_FIND_PRIMING_REACTIONS< / div > < div class = "ttdef" > < b > Definition< / b > reporting.h:37< / div > < / div >
< div class = "ttc" id = "anamespacegridfire_html_a8bea3d74f35d640e693fa398e9b3e154a5afaf45bc4c02208d502d9c0c26d8287" > < div class = "ttname" > < a href = "#a8bea3d74f35d640e693fa398e9b3e154a5afaf45bc4c02208d502d9c0c26d8287" > gridfire::PrimingReportStatus::MAX_ITERATIONS_REACHED< / a > < / div > < div class = "ttdeci" > @ MAX_ITERATIONS_REACHED< / div > < div class = "ttdef" > < b > Definition< / b > reporting.h:34< / div > < / div >
< div class = "ttc" id = "anamespacegridfire_html_a8bea3d74f35d640e693fa398e9b3e154a64d98633bac1de0eb2a539cbfd2a5c2a" > < div class = "ttname" > < a href = "#a8bea3d74f35d640e693fa398e9b3e154a64d98633bac1de0eb2a539cbfd2a5c2a" > gridfire::PrimingReportStatus::FULL_SUCCESS< / a > < / div > < div class = "ttdeci" > @ FULL_SUCCESS< / div > < div class = "ttdef" > < b > Definition< / b > reporting.h:32< / div > < / div >
< div class = "ttc" id = "anamespacegridfire_html_a8bea3d74f35d640e693fa398e9b3e154a708c14ec56942aa5f32e7bef1e29db45" > < div class = "ttname" > < a href = "#a8bea3d74f35d640e693fa398e9b3e154a708c14ec56942aa5f32e7bef1e29db45" > gridfire::PrimingReportStatus::NO_SPECIES_TO_PRIME< / a > < / div > < div class = "ttdeci" > @ NO_SPECIES_TO_PRIME< / div > < div class = "ttdef" > < b > Definition< / b > reporting.h:33< / div > < / div >
< div class = "ttc" id = "anamespacegridfire_html_a8bea3d74f35d640e693fa398e9b3e154a9870268bdece09274aea75557a19158a" > < div class = "ttname" > < a href = "#a8bea3d74f35d640e693fa398e9b3e154a9870268bdece09274aea75557a19158a" > gridfire::PrimingReportStatus::FAILED_TO_FIND_CREATION_CHANNEL< / a > < / div > < div class = "ttdeci" > @ FAILED_TO_FIND_CREATION_CHANNEL< / div > < div class = "ttdef" > < b > Definition< / b > reporting.h:36< / div > < / div >
< div class = "ttc" id = "anamespacegridfire_html_a8bea3d74f35d640e693fa398e9b3e154ab837953f2841baabbae6bb5f2e43e71e" > < div class = "ttname" > < a href = "#a8bea3d74f35d640e693fa398e9b3e154ab837953f2841baabbae6bb5f2e43e71e" > gridfire::PrimingReportStatus::BASE_NETWORK_TOO_SHALLOW< / a > < / div > < div class = "ttdeci" > @ BASE_NETWORK_TOO_SHALLOW< / div > < div class = "ttdef" > < b > Definition< / b > reporting.h:38< / div > < / div >
< div class = "ttc" id = "anamespacegridfire_html_a8bea3d74f35d640e693fa398e9b3e154ae8870a753743b62c511c939eef95c93f" > < div class = "ttname" > < a href = "#a8bea3d74f35d640e693fa398e9b3e154ae8870a753743b62c511c939eef95c93f" > gridfire::PrimingReportStatus::FAILED_TO_FINALIZE_COMPOSITION< / a > < / div > < div class = "ttdeci" > @ FAILED_TO_FINALIZE_COMPOSITION< / div > < div class = "ttdef" > < b > Definition< / b > reporting.h:35< / div > < / div >
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< p > Mapping from < a class = "el" href = "#a8bea3d74f35d640e693fa398e9b3e154" title = "Enumerates outcome codes for a network priming operation." > PrimingReportStatus< / a > codes to human-readable strings. < / p >
< p > Used when formatting or logging the priming status. No preconditions. The map contains entries for all < a class = "el" href = "#a8bea3d74f35d640e693fa398e9b3e154" title = "Enumerates outcome codes for a network priming operation." > PrimingReportStatus< / a > values. < / p >
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