Files
GridFire/docs/html/classgridfire_1_1policy_1_1MainSequencePolicy__coll__graph.svg

341 lines
17 KiB
XML
Raw Normal View History

<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN"
"http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd">
<!-- Generated by graphviz version 2.43.0 (0)
-->
<!-- Title: gridfire::policy::MainSequencePolicy Pages: 1 -->
<!--zoomable 280 -->
<svg id="main" version="1.1" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" xml:space="preserve" onload="init(evt)">
<style type="text/css"><![CDATA[
.node, .edge {opacity: 0.7;}
.node.selected, .edge.selected {opacity: 1;}
.edge:hover path { stroke: red; }
.edge:hover polygon { stroke: red; fill: red; }
]]></style>
<defs>
<circle id="rim" cx="0" cy="0" r="7"/>
<circle id="rim2" cx="0" cy="0" r="3.5"/>
<g id="zoomPlus">
<use xlink:href="#rim" fill="#404040"><set attributeName="fill" to="#808080" begin="zoomplus.mouseover" end="zoomplus.mouseout"/></use>
<path d="M-4,0h8M0,-4v8" fill="none" stroke="white" stroke-width="1.5" pointer-events="none"/>
</g>
<g id="zoomMin">
<use xlink:href="#rim" fill="#404040"><set attributeName="fill" to="#808080" begin="zoomminus.mouseover" end="zoomminus.mouseout"/></use>
<path d="M-4,0h8" fill="none" stroke="white" stroke-width="1.5" pointer-events="none"/>
</g>
<g id="arrowUp" transform="translate(30 24)">
<use xlink:href="#rim"/>
<path pointer-events="none" fill="none" stroke="white" stroke-width="1.5" d="M0,-3.0v7 M-2.5,-0.5L0,-3.0L2.5,-0.5"/>
</g>
<g id="arrowRight" transform="rotate(90) translate(36 -43)">
<use xlink:href="#rim"/>
<path pointer-events="none" fill="none" stroke="white" stroke-width="1.5" d="M0,-3.0v7 M-2.5,-0.5L0,-3.0L2.5,-0.5"/>
</g>
<g id="arrowDown" transform="rotate(180) translate(-30 -48)">
<use xlink:href="#rim"/>
<path pointer-events="none" fill="none" stroke="white" stroke-width="1.5" d="M0,-3.0v7 M-2.5,-0.5L0,-3.0L2.5,-0.5"/>
</g>
<g id="arrowLeft" transform="rotate(270) translate(-36 17)">
<use xlink:href="#rim"/>
<path pointer-events="none" fill="none" stroke="white" stroke-width="1.5" d="M0,-3.0v7 M-2.5,-0.5L0,-3.0L2.5,-0.5"/>
</g>
<g id="resetDef">
<use xlink:href="#rim2" fill="#404040"><set attributeName="fill" to="#808080" begin="reset.mouseover" end="reset.mouseout"/></use>
</g>
</defs>
<script type="application/ecmascript">
var viewWidth = 1103;
var viewHeight = 280;
var sectionId = 'dynsection-1';
</script>
<script type="application/ecmascript" xlink:href="svg.min.js"/>
<svg id="graph" class="graph">
<g id="viewport">
<title>gridfire::policy::MainSequencePolicy</title>
<!-- Node1 -->
<g id="Node000001" class="node">
<title>Node1</title>
<g id="a_Node000001"><a xlink:title="A NetworkPolicy for building reaction networks suitable for low&#45;mass main&#45;sequence stars.">
<polygon fill="#999999" stroke="#666666" points="1095,-153.5 932,-153.5 932,-123.5 1095,-123.5 1095,-153.5"/>
<text text-anchor="start" x="940" y="-141.5" font-family="Helvetica,sans-Serif" font-size="10.00">gridfire::policy::MainSequence</text>
<text text-anchor="middle" x="1013.5" y="-130.5" font-family="Helvetica,sans-Serif" font-size="10.00">Policy</text>
</a>
</g>
</g>
<!-- Node2 -->
<g id="Node000002" class="node">
<title>Node2</title>
<g id="a_Node000002"><a xlink:href="classgridfire_1_1policy_1_1NetworkPolicy.html" target="_top" xlink:title="Abstract interface for policies that construct DynamicEngine networks from a seed composition.">
<polygon fill="white" stroke="#666666" points="743.5,-271.5 610.5,-271.5 610.5,-241.5 743.5,-241.5 743.5,-271.5"/>
<text text-anchor="start" x="618.5" y="-259.5" font-family="Helvetica,sans-Serif" font-size="10.00">gridfire::policy::Network</text>
<text text-anchor="middle" x="677" y="-248.5" font-family="Helvetica,sans-Serif" font-size="10.00">Policy</text>
</a>
</g>
</g>
<!-- Node2&#45;&gt;Node1 -->
<g id="edge1_Node000001_Node000002" class="edge">
<title>Node2&#45;&gt;Node1</title>
<g id="a_edge1_Node000001_Node000002"><a xlink:title=" ">
<path fill="none" stroke="#63b8ff" d="M753.42,-248.77C800.96,-241.99 862.81,-229.62 914,-207.5 945.43,-193.92 977.02,-169.42 995.66,-153.57"/>
<polygon fill="#63b8ff" stroke="#63b8ff" points="752.93,-245.3 743.5,-250.13 753.88,-252.23 752.93,-245.3"/>
</a>
</g>
</g>
<!-- Node3 -->
<g id="Node000003" class="node">
<title>Node3</title>
<g id="a_Node000003"><a xlink:title=" ">
<polygon fill="white" stroke="#666666" points="729.5,-223.5 624.5,-223.5 624.5,-193.5 729.5,-193.5 729.5,-223.5"/>
<text text-anchor="start" x="632.5" y="-211.5" font-family="Helvetica,sans-Serif" font-size="10.00">std::set&lt; fourdst::</text>
<text text-anchor="middle" x="677" y="-200.5" font-family="Helvetica,sans-Serif" font-size="10.00">atomic::Species &gt;</text>
</a>
</g>
</g>
<!-- Node3&#45;&gt;Node1 -->
<g id="edge2_Node000001_Node000003" class="edge">
<title>Node3&#45;&gt;Node1</title>
<g id="a_edge2_Node000001_Node000003"><a xlink:title=" ">
<path fill="none" stroke="#9a32cd" stroke-dasharray="5,2" d="M739.8,-199.74C787.64,-192.49 855.4,-181.17 914,-167.5 930.84,-163.57 949.06,-158.46 965.2,-153.62"/>
<polygon fill="#9a32cd" stroke="#9a32cd" points="739.27,-196.28 729.91,-201.23 740.31,-203.2 739.27,-196.28"/>
</a>
</g>
<text text-anchor="middle" x="846.5" y="-195.5" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> m_seed_species</text>
</g>
<!-- Node4 -->
<g id="Node000004" class="node">
<title>Node4</title>
<g id="a_Node000004"><a xlink:title=" ">
<polygon fill="white" stroke="#666666" points="460.5,-218 406.5,-218 406.5,-199 460.5,-199 460.5,-218"/>
<text text-anchor="middle" x="433.5" y="-206" font-family="Helvetica,sans-Serif" font-size="10.00">Species</text>
</a>
</g>
</g>
<!-- Node4&#45;&gt;Node3 -->
<g id="edge3_Node000003_Node000004" class="edge">
<title>Node4&#45;&gt;Node3</title>
<g id="a_edge3_Node000003_Node000004"><a xlink:title=" ">
<path fill="none" stroke="#9a32cd" stroke-dasharray="5,2" d="M470.85,-208.5C511.67,-208.5 578.23,-208.5 624.41,-208.5"/>
<polygon fill="#9a32cd" stroke="#9a32cd" points="470.8,-205 460.8,-208.5 470.8,-212 470.8,-205"/>
</a>
</g>
<text text-anchor="middle" x="550.5" y="-211.5" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> keys</text>
</g>
<!-- Node5 -->
<g id="Node000005" class="node">
<title>Node5</title>
<g id="a_Node000005"><a xlink:title=" ">
<polygon fill="white" stroke="#666666" points="761,-175.5 593,-175.5 593,-145.5 761,-145.5 761,-175.5"/>
<text text-anchor="start" x="601" y="-163.5" font-family="Helvetica,sans-Serif" font-size="10.00">std::unique_ptr&lt; gridfire</text>
<text text-anchor="middle" x="677" y="-152.5" font-family="Helvetica,sans-Serif" font-size="10.00">::policy::ReactionChainPolicy &gt;</text>
</a>
</g>
</g>
<!-- Node5&#45;&gt;Node1 -->
<g id="edge4_Node000001_Node000005" class="edge">
<title>Node5&#45;&gt;Node1</title>
<g id="a_edge4_Node000001_Node000005"><a xlink:title=" ">
<path fill="none" stroke="#9a32cd" stroke-dasharray="5,2" d="M771.37,-154.36C821.82,-151.04 883.49,-146.98 931.83,-143.81"/>
<polygon fill="#9a32cd" stroke="#9a32cd" points="770.86,-150.88 761.12,-155.03 771.32,-157.87 770.86,-150.88"/>
</a>
</g>
<text text-anchor="middle" x="846.5" y="-155.5" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> m_reaction_policy</text>
</g>
<!-- Node6 -->
<g id="Node000006" class="node">
<title>Node6</title>
<g id="a_Node000006"><a xlink:href="classgridfire_1_1policy_1_1ReactionChainPolicy.html" target="_top" xlink:title="Abstract interface encapsulating a set of reactions representing a single chain or pathway.">
<polygon fill="white" stroke="#666666" points="500.5,-175.5 366.5,-175.5 366.5,-145.5 500.5,-145.5 500.5,-175.5"/>
<text text-anchor="start" x="374.5" y="-163.5" font-family="Helvetica,sans-Serif" font-size="10.00">gridfire::policy::Reaction</text>
<text text-anchor="middle" x="433.5" y="-152.5" font-family="Helvetica,sans-Serif" font-size="10.00">ChainPolicy</text>
</a>
</g>
</g>
<!-- Node6&#45;&gt;Node5 -->
<g id="edge5_Node000005_Node000006" class="edge">
<title>Node6&#45;&gt;Node5</title>
<g id="a_edge5_Node000005_Node000006"><a xlink:title=" ">
<path fill="none" stroke="#9a32cd" stroke-dasharray="5,2" d="M510.97,-160.5C536.94,-160.5 566.08,-160.5 592.57,-160.5"/>
<polygon fill="#9a32cd" stroke="#9a32cd" points="510.81,-157 500.81,-160.5 510.81,-164 510.81,-157"/>
</a>
</g>
<text text-anchor="middle" x="550.5" y="-163.5" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> ptr</text>
</g>
<!-- Node7 -->
<g id="Node000007" class="node">
<title>Node7</title>
<g id="a_Node000007"><a xlink:title=" ">
<polygon fill="white" stroke="#666666" points="716,-127 638,-127 638,-108 716,-108 716,-127"/>
<text text-anchor="middle" x="677" y="-115" font-family="Helvetica,sans-Serif" font-size="10.00">Composition</text>
</a>
</g>
</g>
<!-- Node7&#45;&gt;Node1 -->
<g id="edge6_Node000001_Node000007" class="edge">
<title>Node7&#45;&gt;Node1</title>
<g id="a_edge6_Node000001_Node000007"><a xlink:title=" ">
<path fill="none" stroke="#9a32cd" stroke-dasharray="5,2" d="M726.15,-116.96C773.92,-116.83 849.15,-117.76 914,-123.5 919.86,-124.02 925.9,-124.66 931.97,-125.39"/>
<polygon fill="#9a32cd" stroke="#9a32cd" points="726.08,-113.46 716.1,-117 726.11,-120.46 726.08,-113.46"/>
</a>
</g>
<text text-anchor="middle" x="846.5" y="-126.5" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> m_initializing_composition</text>
</g>
<!-- Node8 -->
<g id="Node000008" class="node">
<title>Node8</title>
<g id="a_Node000008"><a xlink:title=" ">
<polygon fill="white" stroke="#666666" points="758.5,-89.5 595.5,-89.5 595.5,-59.5 758.5,-59.5 758.5,-89.5"/>
<text text-anchor="start" x="603.5" y="-77.5" font-family="Helvetica,sans-Serif" font-size="10.00">std::unique_ptr&lt; gridfire</text>
<text text-anchor="middle" x="677" y="-66.5" font-family="Helvetica,sans-Serif" font-size="10.00">::partition::PartitionFunction &gt;</text>
</a>
</g>
</g>
<!-- Node8&#45;&gt;Node1 -->
<g id="edge7_Node000001_Node000008" class="edge">
<title>Node8&#45;&gt;Node1</title>
<g id="a_edge7_Node000001_Node000008"><a xlink:title=" ">
<path fill="none" stroke="#9a32cd" stroke-dasharray="5,2" d="M768.76,-79.65C813.02,-83.48 866.76,-90.11 914,-101.5 936.02,-106.81 959.82,-115.66 978.51,-123.37"/>
<polygon fill="#9a32cd" stroke="#9a32cd" points="768.85,-76.15 758.6,-78.81 768.27,-83.12 768.85,-76.15"/>
</a>
</g>
<text text-anchor="middle" x="846.5" y="-104.5" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> m_partition_function</text>
</g>
<!-- Node9 -->
<g id="Node000009" class="node">
<title>Node9</title>
<g id="a_Node000009"><a xlink:href="classgridfire_1_1partition_1_1PartitionFunction.html" target="_top" xlink:title="Abstract interface for evaluating nuclear partition functions.">
<polygon fill="white" stroke="#666666" points="485.5,-89.5 381.5,-89.5 381.5,-59.5 485.5,-59.5 485.5,-89.5"/>
<text text-anchor="start" x="389.5" y="-77.5" font-family="Helvetica,sans-Serif" font-size="10.00">gridfire::partition</text>
<text text-anchor="middle" x="433.5" y="-66.5" font-family="Helvetica,sans-Serif" font-size="10.00">::PartitionFunction</text>
</a>
</g>
</g>
<!-- Node9&#45;&gt;Node8 -->
<g id="edge8_Node000008_Node000009" class="edge">
<title>Node9&#45;&gt;Node8</title>
<g id="a_edge8_Node000008_Node000009"><a xlink:title=" ">
<path fill="none" stroke="#9a32cd" stroke-dasharray="5,2" d="M496.1,-74.5C526.28,-74.5 563.01,-74.5 595.4,-74.5"/>
<polygon fill="#9a32cd" stroke="#9a32cd" points="495.72,-71 485.72,-74.5 495.72,-78 495.72,-71"/>
</a>
</g>
<text text-anchor="middle" x="550.5" y="-77.5" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> ptr</text>
</g>
<!-- Node10 -->
<g id="Node000010" class="node">
<title>Node10</title>
<g id="a_Node000010"><a xlink:title=" ">
<polygon fill="white" stroke="#666666" points="744,-41 610,-41 610,0 744,0 744,-41"/>
<text text-anchor="start" x="618" y="-29" font-family="Helvetica,sans-Serif" font-size="10.00">std::vector&lt; std::unique</text>
<text text-anchor="start" x="618" y="-18" font-family="Helvetica,sans-Serif" font-size="10.00">_ptr&lt; gridfire::engine</text>
<text text-anchor="middle" x="677" y="-7" font-family="Helvetica,sans-Serif" font-size="10.00">::DynamicEngine &gt; &gt;</text>
</a>
</g>
</g>
<!-- Node10&#45;&gt;Node1 -->
<g id="edge9_Node000001_Node000010" class="edge">
<title>Node10&#45;&gt;Node1</title>
<g id="a_edge9_Node000001_Node000010"><a xlink:title=" ">
<path fill="none" stroke="#9a32cd" stroke-dasharray="5,2" d="M754.41,-26.32C801.92,-32.03 863.37,-43.31 914,-65.5 946.56,-79.77 978.55,-106.49 996.87,-123.34"/>
<polygon fill="#9a32cd" stroke="#9a32cd" points="754.52,-22.81 744.19,-25.15 753.73,-29.76 754.52,-22.81"/>
</a>
</g>
<text text-anchor="middle" x="846.5" y="-68.5" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> m_network_stack</text>
</g>
<!-- Node11 -->
<g id="Node000011" class="node">
<title>Node11</title>
<g id="a_Node000011"><a xlink:title=" ">
<polygon fill="white" stroke="#666666" points="508,-35.5 359,-35.5 359,-5.5 508,-5.5 508,-35.5"/>
<text text-anchor="start" x="367" y="-23.5" font-family="Helvetica,sans-Serif" font-size="10.00">std::unique_ptr&lt; gridfire</text>
<text text-anchor="middle" x="433.5" y="-12.5" font-family="Helvetica,sans-Serif" font-size="10.00">::engine::DynamicEngine &gt;</text>
</a>
</g>
</g>
<!-- Node11&#45;&gt;Node10 -->
<g id="edge10_Node000010_Node000011" class="edge">
<title>Node11&#45;&gt;Node10</title>
<g id="a_edge10_Node000010_Node000011"><a xlink:title=" ">
<path fill="none" stroke="#9a32cd" stroke-dasharray="5,2" d="M518.27,-20.5C548.17,-20.5 581.42,-20.5 609.65,-20.5"/>
<polygon fill="#9a32cd" stroke="#9a32cd" points="518.27,-17 508.27,-20.5 518.27,-24 518.27,-17"/>
</a>
</g>
<text text-anchor="middle" x="550.5" y="-23.5" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> elements</text>
</g>
<!-- Node12 -->
<g id="Node000012" class="node">
<title>Node12</title>
<g id="a_Node000012"><a xlink:href="classgridfire_1_1engine_1_1DynamicEngine.html" target="_top" xlink:title="Abstract class for engines supporting Jacobian and stoichiometry operations.">
<polygon fill="white" stroke="#666666" points="306,-35.5 166,-35.5 166,-5.5 306,-5.5 306,-35.5"/>
<text text-anchor="start" x="174" y="-23.5" font-family="Helvetica,sans-Serif" font-size="10.00">gridfire::engine::Dynamic</text>
<text text-anchor="middle" x="236" y="-12.5" font-family="Helvetica,sans-Serif" font-size="10.00">Engine</text>
</a>
</g>
</g>
<!-- Node12&#45;&gt;Node11 -->
<g id="edge11_Node000011_Node000012" class="edge">
<title>Node12&#45;&gt;Node11</title>
<g id="a_edge11_Node000011_Node000012"><a xlink:title=" ">
<path fill="none" stroke="#9a32cd" stroke-dasharray="5,2" d="M316.3,-20.5C330.33,-20.5 344.88,-20.5 358.75,-20.5"/>
<polygon fill="#9a32cd" stroke="#9a32cd" points="316.2,-17 306.2,-20.5 316.2,-24 316.2,-17"/>
</a>
</g>
<text text-anchor="middle" x="332.5" y="-23.5" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> ptr</text>
</g>
<!-- Node13 -->
<g id="Node000013" class="node">
<title>Node13</title>
<g id="a_Node000013"><a xlink:href="classgridfire_1_1engine_1_1Engine.html" target="_top" xlink:title="Abstract base class for a reaction network engine.">
<polygon fill="white" stroke="#666666" points="129,-30 0,-30 0,-11 129,-11 129,-30"/>
<text text-anchor="middle" x="64.5" y="-18" font-family="Helvetica,sans-Serif" font-size="10.00">gridfire::engine::Engine</text>
</a>
</g>
</g>
<!-- Node13&#45;&gt;Node12 -->
<g id="edge12_Node000012_Node000013" class="edge">
<title>Node13&#45;&gt;Node12</title>
<g id="a_edge12_Node000012_Node000013"><a xlink:title=" ">
<path fill="none" stroke="#63b8ff" d="M139.36,-20.5C148.19,-20.5 157.18,-20.5 165.94,-20.5"/>
<polygon fill="#63b8ff" stroke="#63b8ff" points="139.1,-17 129.1,-20.5 139.1,-24 139.1,-17"/>
</a>
</g>
</g>
</g>
</svg>
<g id="navigator" transform="translate(0 0)" fill="#404254">
<rect fill="#f2f5e9" fill-opacity="0.5" stroke="#606060" stroke-width=".5" x="0" y="0" width="60" height="60"/>
<use id="zoomplus" xlink:href="#zoomPlus" x="17" y="9" onmousedown="handleZoom(evt,'in')"/>
<use id="zoomminus" xlink:href="#zoomMin" x="42" y="9" onmousedown="handleZoom(evt,'out')"/>
<use id="reset" xlink:href="#resetDef" x="30" y="36" onmousedown="handleReset()"/>
<use id="arrowup" xlink:href="#arrowUp" x="0" y="0" onmousedown="handlePan(0,-1)"/>
<use id="arrowright" xlink:href="#arrowRight" x="0" y="0" onmousedown="handlePan(1,0)"/>
<use id="arrowdown" xlink:href="#arrowDown" x="0" y="0" onmousedown="handlePan(0,1)"/>
<use id="arrowleft" xlink:href="#arrowLeft" x="0" y="0" onmousedown="handlePan(-1,0)"/>
</g>
<svg viewBox="0 0 15 15" width="100%" height="30px" preserveAspectRatio="xMaxYMin meet">
<g id="arrow_out" transform="scale(0.3 0.3)">
<a xlink:href="classgridfire_1_1policy_1_1MainSequencePolicy__coll__graph_org.svg" target="_base">
<rect id="button" ry="5" rx="5" y="6" x="6" height="38" width="38"
fill="#f2f5e9" fill-opacity="0.5" stroke="#606060" stroke-width="1.0"/>
<path id="arrow"
d="M 11.500037,31.436501 C 11.940474,20.09759 22.043105,11.32322 32.158766,21.979434 L 37.068811,17.246167 C 37.068811,17.246167 37.088388,32 37.088388,32 L 22.160133,31.978069 C 22.160133,31.978069 26.997745,27.140456 26.997745,27.140456 C 18.528582,18.264221 13.291696,25.230495 11.500037,31.436501 z"
style="fill:#404040;"/>
</a>
</g>
</svg>
<style type='text/css'>
<![CDATA[
[data-mouse-over-selected='false'] { opacity: 0.7; }
[data-mouse-over-selected='true'] { opacity: 1.0; }
]]>
</style>
<script type="application/ecmascript"><![CDATA[
document.addEventListener('DOMContentLoaded', (event) => {
highlightEdges();
highlightAdjacentNodes();
});
]]></script>
</svg>