2025-07-24 11:10:45 -04:00
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
< html xmlns = "http://www.w3.org/1999/xhtml" lang = "en-US" >
< head >
< meta http-equiv = "Content-Type" content = "text/xhtml;charset=UTF-8" / >
< meta http-equiv = "X-UA-Compatible" content = "IE=11" / >
< meta name = "generator" content = "Doxygen 1.13.2" / >
< meta name = "viewport" content = "width=device-width, initial-scale=1" / >
< title > GridFire: PyDynamicEngine Class Reference< / title >
< link href = "tabs.css" rel = "stylesheet" type = "text/css" / >
< script type = "text/javascript" src = "jquery.js" > < / script >
< script type = "text/javascript" src = "dynsections.js" > < / script >
< script type = "text/javascript" src = "clipboard.js" > < / script >
< link href = "navtree.css" rel = "stylesheet" type = "text/css" / >
< script type = "text/javascript" src = "navtreedata.js" > < / script >
< script type = "text/javascript" src = "navtree.js" > < / script >
< script type = "text/javascript" src = "resize.js" > < / script >
< script type = "text/javascript" src = "cookie.js" > < / script >
< link href = "search/search.css" rel = "stylesheet" type = "text/css" / >
< script type = "text/javascript" src = "search/searchdata.js" > < / script >
< script type = "text/javascript" src = "search/search.js" > < / script >
< link href = "doxygen.css" rel = "stylesheet" type = "text/css" / >
< link href = "doxygen-awesome.css" rel = "stylesheet" type = "text/css" / >
< link href = "doxygen-awesome-sidebar-only.css" rel = "stylesheet" type = "text/css" / >
< / head >
< body >
< div id = "top" > <!-- do not remove this div, it is closed by doxygen! -->
< div id = "titlearea" >
< table cellspacing = "0" cellpadding = "0" >
< tbody >
< tr id = "projectrow" >
< td id = "projectalign" >
2025-11-04 14:04:26 -05:00
< div id = "projectname" > GridFire< span id = "projectnumber" >   v0.7.0-alpha< / span >
2025-07-24 11:10:45 -04:00
< / div >
< div id = "projectbrief" > General Purpose Nuclear Network< / div >
< / td >
< / tr >
< / tbody >
< / table >
< / div >
<!-- end header part -->
<!-- Generated by Doxygen 1.13.2 -->
< script type = "text/javascript" >
/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699& dn=expat.txt MIT */
var searchBox = new SearchBox("searchBox", "search/",'.html');
/* @license-end */
< / script >
< script type = "text/javascript" >
/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699& dn=expat.txt MIT */
$(function() { codefold.init(0); });
/* @license-end */
< / script >
< script type = "text/javascript" src = "menudata.js" > < / script >
< script type = "text/javascript" src = "menu.js" > < / script >
< script type = "text/javascript" >
/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699& dn=expat.txt MIT */
$(function() {
initMenu('',true,false,'search.php','Search',true);
$(function() { init_search(); });
});
/* @license-end */
< / script >
< div id = "main-nav" > < / div >
< / div > <!-- top -->
< div id = "side-nav" class = "ui-resizable side-nav-resizable" >
< div id = "nav-tree" >
< div id = "nav-tree-contents" >
< div id = "nav-sync" class = "sync" > < / div >
< / div >
< / div >
< div id = "splitbar" style = "-moz-user-select:none;"
class="ui-resizable-handle">
< / div >
< / div >
< script type = "text/javascript" >
/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699& dn=expat.txt MIT */
$(function(){initNavTree('class_py_dynamic_engine.html',''); initResizable(true); });
/* @license-end */
< / script >
< div id = "doc-content" >
<!-- window showing the filter options -->
< div id = "MSearchSelectWindow"
onmouseover="return searchBox.OnSearchSelectShow()"
onmouseout="return searchBox.OnSearchSelectHide()"
onkeydown="return searchBox.OnSearchSelectKey(event)">
< / div >
<!-- iframe showing the search results (closed by default) -->
< div id = "MSearchResultsWindow" >
< div id = "MSearchResults" >
< div class = "SRPage" >
< div id = "SRIndex" >
< div id = "SRResults" > < / div >
< div class = "SRStatus" id = "Loading" > Loading...< / div >
< div class = "SRStatus" id = "Searching" > Searching...< / div >
< div class = "SRStatus" id = "NoMatches" > No Matches< / div >
< / div >
< / div >
< / div >
< / div >
< div class = "header" >
< div class = "summary" >
< a href = "#pub-methods" > Public Member Functions< / a > |
< a href = "#pri-attribs" > Private Attributes< / a > |
< a href = "class_py_dynamic_engine-members.html" > List of all members< / a > < / div >
< div class = "headertitle" > < div class = "title" > PyDynamicEngine Class Reference< span class = "mlabels" > < span class = "mlabel final" > final< / span > < / span > < / div > < / div >
< / div > <!-- header -->
< div class = "contents" >
2025-07-31 10:54:31 -04:00
< p > < code > #include < py_engine.h> < / code > < / p >
2025-07-24 11:10:45 -04:00
< div class = "dynheader" >
Inheritance diagram for PyDynamicEngine:< / div >
< div class = "dyncontent" >
2025-11-24 09:08:28 -05:00
< div class = "center" > < iframe scrolling = "no" frameborder = "0" src = "class_py_dynamic_engine__inherit__graph.svg" width = "171" height = "111" > < p > < b > This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.< / b > < / p > < / iframe > < / div >
2025-11-06 09:16:40 -05:00
< center > < span class = "legend" > [< a target = "top" href = "graph_legend.html" > legend< / a > ]< / span > < / center > < / div >
< div class = "dynheader" >
Collaboration diagram for PyDynamicEngine:< / div >
< div class = "dyncontent" >
2025-11-24 09:08:28 -05:00
< div class = "center" > < iframe scrolling = "no" frameborder = "0" src = "class_py_dynamic_engine__coll__graph.svg" width = "331" height = "140" > < p > < b > This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.< / b > < / p > < / iframe > < / div >
2025-11-06 09:16:40 -05:00
< center > < span class = "legend" > [< a target = "top" href = "graph_legend.html" > legend< / a > ]< / span > < / center > < / div >
2025-07-24 11:10:45 -04:00
< table class = "memberdecls" >
< tr class = "heading" > < td colspan = "2" > < h2 class = "groupheader" > < a id = "pub-methods" name = "pub-methods" > < / a >
Public Member Functions< / h2 > < / td > < / tr >
< tr class = "memitem:afc745e7ab5da5d8b3cf916044515cd7d" id = "r_afc745e7ab5da5d8b3cf916044515cd7d" > < td class = "memItemLeft" align = "right" valign = "top" > const std::vector< fourdst::atomic::Species > &   < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#afc745e7ab5da5d8b3cf916044515cd7d" > getNetworkSpecies< / a > () const override< / td > < / tr >
< tr class = "memdesc:afc745e7ab5da5d8b3cf916044515cd7d" > < td class = "mdescLeft" >   < / td > < td class = "mdescRight" > < a class = "el" href = "class_py_dynamic_engine.html" > PyDynamicEngine< / a > Implementation ///. < br / > < / td > < / tr >
< tr class = "separator:afc745e7ab5da5d8b3cf916044515cd7d" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
2025-11-24 09:08:28 -05:00
< tr class = "memitem:a339e7238d290665ae9823c701e0ba32e" id = "r_a339e7238d290665ae9823c701e0ba32e" > < td class = "memItemLeft" align = "right" valign = "top" > std::expected< gridfire::StepDerivatives< double > , gridfire::expectations::StaleEngineError >   < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#a339e7238d290665ae9823c701e0ba32e" > calculateRHSAndEnergy< / a > (const fourdst::composition::CompositionAbstract & comp, double T9, double rho) const override< / td > < / tr >
< tr class = "separator:a339e7238d290665ae9823c701e0ba32e" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
2025-11-04 14:04:26 -05:00
< tr class = "memitem:a2a63d0132254983a2143f31e863a5c18" id = "r_a2a63d0132254983a2143f31e863a5c18" > < td class = "memItemLeft" align = "right" valign = "top" > void  < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#a2a63d0132254983a2143f31e863a5c18" > generateJacobianMatrix< / a > (const fourdst::composition::Composition & comp, double T9, double rho) const override< / td > < / tr >
< tr class = "separator:a2a63d0132254983a2143f31e863a5c18" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
2025-11-24 09:08:28 -05:00
< tr class = "memitem:a2c0a465848ed6da8d3aaef5f6824375d" id = "r_a2c0a465848ed6da8d3aaef5f6824375d" > < td class = "memItemLeft" align = "right" valign = "top" > void  < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#a2c0a465848ed6da8d3aaef5f6824375d" > generateJacobianMatrix< / a > (const fourdst::composition::CompositionAbstract & comp, double T9, double rho, const std::vector< fourdst::atomic::Species > & activeSpecies) const override< / td > < / tr >
< tr class = "separator:a2c0a465848ed6da8d3aaef5f6824375d" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
< tr class = "memitem:a36f2dbd2278608fe8a4ef7f08d7e4963" id = "r_a36f2dbd2278608fe8a4ef7f08d7e4963" > < td class = "memItemLeft" align = "right" valign = "top" > void  < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#a36f2dbd2278608fe8a4ef7f08d7e4963" > generateJacobianMatrix< / a > (const fourdst::composition::Composition & comp, double T9, double rho, const gridfire::SparsityPattern & sparsityPattern) const override< / td > < / tr >
2025-11-04 14:04:26 -05:00
< tr class = "separator:a36f2dbd2278608fe8a4ef7f08d7e4963" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
< tr class = "memitem:a63bbe8f6d3849e99dd41b6d9613ff1f0" id = "r_a63bbe8f6d3849e99dd41b6d9613ff1f0" > < td class = "memItemLeft" align = "right" valign = "top" > double  < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#a63bbe8f6d3849e99dd41b6d9613ff1f0" > getJacobianMatrixEntry< / a > (const fourdst::atomic::Species & rowSpecies, const fourdst::atomic::Species & colSpecies) const override< / td > < / tr >
< tr class = "separator:a63bbe8f6d3849e99dd41b6d9613ff1f0" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
2025-07-24 11:10:45 -04:00
< tr class = "memitem:a2066649ca11a869c054079ea12d8d0e9" id = "r_a2066649ca11a869c054079ea12d8d0e9" > < td class = "memItemLeft" align = "right" valign = "top" > void  < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#a2066649ca11a869c054079ea12d8d0e9" > generateStoichiometryMatrix< / a > () override< / td > < / tr >
< tr class = "separator:a2066649ca11a869c054079ea12d8d0e9" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
2025-11-04 14:04:26 -05:00
< tr class = "memitem:a3dd5cf419f25e76e144af35df15a2067" id = "r_a3dd5cf419f25e76e144af35df15a2067" > < td class = "memItemLeft" align = "right" valign = "top" > int  < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#a3dd5cf419f25e76e144af35df15a2067" > getStoichiometryMatrixEntry< / a > (const fourdst::atomic::Species & species, const < a class = "el" href = "classgridfire_1_1reaction_1_1_reaction.html" > gridfire::reaction::Reaction< / a > & reaction) const override< / td > < / tr >
< tr class = "separator:a3dd5cf419f25e76e144af35df15a2067" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
2025-11-24 09:08:28 -05:00
< tr class = "memitem:a8facba88b6df6e016ce53a0ff3cff125" id = "r_a8facba88b6df6e016ce53a0ff3cff125" > < td class = "memItemLeft" align = "right" valign = "top" > double  < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#a8facba88b6df6e016ce53a0ff3cff125" > calculateMolarReactionFlow< / a > (const < a class = "el" href = "classgridfire_1_1reaction_1_1_reaction.html" > gridfire::reaction::Reaction< / a > & reaction, const fourdst::composition::CompositionAbstract & comp, double T9, double rho) const override< / td > < / tr >
< tr class = "separator:a8facba88b6df6e016ce53a0ff3cff125" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
2025-10-08 11:17:09 -04:00
< tr class = "memitem:a1d5143640666631501cf229bc491516e" id = "r_a1d5143640666631501cf229bc491516e" > < td class = "memItemLeft" align = "right" valign = "top" > const < a class = "el" href = "classgridfire_1_1reaction_1_1_reaction_set.html" > gridfire::reaction::ReactionSet< / a > &   < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#a1d5143640666631501cf229bc491516e" > getNetworkReactions< / a > () const override< / td > < / tr >
< tr class = "separator:a1d5143640666631501cf229bc491516e" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
< tr class = "memitem:af469cba3be850d53f659ec173f0eb4e4" id = "r_af469cba3be850d53f659ec173f0eb4e4" > < td class = "memItemLeft" align = "right" valign = "top" > void  < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#af469cba3be850d53f659ec173f0eb4e4" > setNetworkReactions< / a > (const < a class = "el" href = "classgridfire_1_1reaction_1_1_reaction_set.html" > gridfire::reaction::ReactionSet< / a > & reactions) override< / td > < / tr >
< tr class = "separator:af469cba3be850d53f659ec173f0eb4e4" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
2025-11-24 09:08:28 -05:00
< tr class = "memitem:a8bbf2956e0a3d01065c14e74cdc71626" id = "r_a8bbf2956e0a3d01065c14e74cdc71626" > < td class = "memItemLeft" align = "right" valign = "top" > std::expected< std::unordered_map< fourdst::atomic::Species, double > , gridfire::expectations::StaleEngineError >   < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#a8bbf2956e0a3d01065c14e74cdc71626" > getSpeciesTimescales< / a > (const fourdst::composition::CompositionAbstract & comp, double T9, double rho) const override< / td > < / tr >
< tr class = "separator:a8bbf2956e0a3d01065c14e74cdc71626" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
< tr class = "memitem:a16c27e5af29ddf187e5ab82a6e6db57b" id = "r_a16c27e5af29ddf187e5ab82a6e6db57b" > < td class = "memItemLeft" align = "right" valign = "top" > std::expected< std::unordered_map< fourdst::atomic::Species, double > , gridfire::expectations::StaleEngineError >   < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#a16c27e5af29ddf187e5ab82a6e6db57b" > getSpeciesDestructionTimescales< / a > (const fourdst::composition::Composition & comp, double T9, double rho) const override< / td > < / tr >
2025-11-04 14:04:26 -05:00
< tr class = "separator:a16c27e5af29ddf187e5ab82a6e6db57b" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
2025-07-24 11:10:45 -04:00
< tr class = "memitem:af8e6a8cd44f278535d7bcc9a896d6da8" id = "r_af8e6a8cd44f278535d7bcc9a896d6da8" > < td class = "memItemLeft" align = "right" valign = "top" > fourdst::composition::Composition  < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#af8e6a8cd44f278535d7bcc9a896d6da8" > update< / a > (const < a class = "el" href = "structgridfire_1_1_net_in.html" > gridfire::NetIn< / a > & netIn) override< / td > < / tr >
< tr class = "separator:af8e6a8cd44f278535d7bcc9a896d6da8" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
< tr class = "memitem:a55bf19ed7534a312a36faf74753f7b14" id = "r_a55bf19ed7534a312a36faf74753f7b14" > < td class = "memItemLeft" align = "right" valign = "top" > bool  < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#a55bf19ed7534a312a36faf74753f7b14" > isStale< / a > (const < a class = "el" href = "structgridfire_1_1_net_in.html" > gridfire::NetIn< / a > & netIn) override< / td > < / tr >
< tr class = "separator:a55bf19ed7534a312a36faf74753f7b14" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
< tr class = "memitem:afa3abfd612033336a656f092721c14ac" id = "r_afa3abfd612033336a656f092721c14ac" > < td class = "memItemLeft" align = "right" valign = "top" > void  < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#afa3abfd612033336a656f092721c14ac" > setScreeningModel< / a > (< a class = "el" href = "namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25" > gridfire::screening::ScreeningType< / a > model) override< / td > < / tr >
< tr class = "separator:afa3abfd612033336a656f092721c14ac" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
< tr class = "memitem:ab4cfdca5e15957c5cef75ffa6dedeee5" id = "r_ab4cfdca5e15957c5cef75ffa6dedeee5" > < td class = "memItemLeft" align = "right" valign = "top" > < a class = "el" href = "namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25" > gridfire::screening::ScreeningType< / a >   < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#ab4cfdca5e15957c5cef75ffa6dedeee5" > getScreeningModel< / a > () const override< / td > < / tr >
< tr class = "separator:ab4cfdca5e15957c5cef75ffa6dedeee5" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
2025-10-08 11:17:09 -04:00
< tr class = "memitem:a95d10a7b240d543a1bc6c67ddf2dc8e0" id = "r_a95d10a7b240d543a1bc6c67ddf2dc8e0" > < td class = "memItemLeft" align = "right" valign = "top" > size_t  < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#a95d10a7b240d543a1bc6c67ddf2dc8e0" > getSpeciesIndex< / a > (const fourdst::atomic::Species & species) const override< / td > < / tr >
< tr class = "separator:a95d10a7b240d543a1bc6c67ddf2dc8e0" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
2025-07-24 11:10:45 -04:00
< tr class = "memitem:a61bb4b430fe740cfb2c24e5cc673e4ac" id = "r_a61bb4b430fe740cfb2c24e5cc673e4ac" > < td class = "memItemLeft" align = "right" valign = "top" > std::vector< double >   < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#a61bb4b430fe740cfb2c24e5cc673e4ac" > mapNetInToMolarAbundanceVector< / a > (const < a class = "el" href = "structgridfire_1_1_net_in.html" > gridfire::NetIn< / a > & netIn) const override< / td > < / tr >
< tr class = "separator:a61bb4b430fe740cfb2c24e5cc673e4ac" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
2025-11-24 09:08:28 -05:00
< tr class = "memitem:ac22a10412be6649bf379e6d61113c878" id = "r_ac22a10412be6649bf379e6d61113c878" > < td class = "memItemLeft" align = "right" valign = "top" > gridfire::PrimingReport  < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#ac22a10412be6649bf379e6d61113c878" > primeEngine< / a > (const < a class = "el" href = "structgridfire_1_1_net_in.html" > gridfire::NetIn< / a > & netIn) override< / td > < / tr >
2025-07-24 11:10:45 -04:00
< tr class = "separator:ac22a10412be6649bf379e6d61113c878" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
2025-11-24 09:08:28 -05:00
< tr class = "memitem:adba68716d832b6100e08d32fbc36f13c" id = "r_adba68716d832b6100e08d32fbc36f13c" > < td class = "memItemLeft" align = "right" valign = "top" > gridfire::BuildDepthType  < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#adba68716d832b6100e08d32fbc36f13c" > getDepth< / a > () const override< / td > < / tr >
2025-07-24 11:10:45 -04:00
< tr class = "separator:adba68716d832b6100e08d32fbc36f13c" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
2025-11-24 09:08:28 -05:00
< tr class = "memitem:a8e39a86c2ba1ac7f1669362554f07fcf" id = "r_a8e39a86c2ba1ac7f1669362554f07fcf" > < td class = "memItemLeft" align = "right" valign = "top" > void  < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#a8e39a86c2ba1ac7f1669362554f07fcf" > rebuild< / a > (const fourdst::composition::CompositionAbstract & comp, gridfire::BuildDepthType depth) override< / td > < / tr >
< tr class = "separator:a8e39a86c2ba1ac7f1669362554f07fcf" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
< tr class = "memitem:a09eb8874b0c687aacc84a7bc7a5e2330" id = "r_a09eb8874b0c687aacc84a7bc7a5e2330" > < td class = "memItemLeft" align = "right" valign = "top" > gridfire::EnergyDerivatives  < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#a09eb8874b0c687aacc84a7bc7a5e2330" > calculateEpsDerivatives< / a > (const fourdst::composition::Composition & comp, double T9, double rho) const override< / td > < / tr >
2025-11-04 14:04:26 -05:00
< tr class = "separator:a09eb8874b0c687aacc84a7bc7a5e2330" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
< tr class = "memitem:a6c5397f57fb9e115495188a1d2296147" id = "r_a6c5397f57fb9e115495188a1d2296147" > < td class = "memItemLeft" align = "right" valign = "top" > fourdst::composition::Composition  < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#a6c5397f57fb9e115495188a1d2296147" > collectComposition< / a > (fourdst::composition::Composition & comp) const override< / td > < / tr >
< tr class = "separator:a6c5397f57fb9e115495188a1d2296147" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
2025-07-24 11:10:45 -04:00
< / table > < table class = "memberdecls" >
< tr class = "heading" > < td colspan = "2" > < h2 class = "groupheader" > < a id = "pri-attribs" name = "pri-attribs" > < / a >
Private Attributes< / h2 > < / td > < / tr >
< tr class = "memitem:a2246382b1c98ba69cdb419bba63a6d03" id = "r_a2246382b1c98ba69cdb419bba63a6d03" > < td class = "memItemLeft" align = "right" valign = "top" > std::vector< fourdst::atomic::Species >   < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#a2246382b1c98ba69cdb419bba63a6d03" > m_species_cache< / a > < / td > < / tr >
< tr class = "separator:a2246382b1c98ba69cdb419bba63a6d03" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
< / table >
2025-07-31 10:54:31 -04:00
< h2 class = "groupheader" > Member Function Documentation< / h2 >
2025-11-04 14:04:26 -05:00
< a id = "a09eb8874b0c687aacc84a7bc7a5e2330" name = "a09eb8874b0c687aacc84a7bc7a5e2330" > < / a >
< h2 class = "memtitle" > < span class = "permalink" > < a href = "#a09eb8874b0c687aacc84a7bc7a5e2330" > ◆   < / a > < / span > calculateEpsDerivatives()< / h2 >
< div class = "memitem" >
< div class = "memproto" >
< table class = "mlabels" >
< tr >
< td class = "mlabels-left" >
< table class = "memname" >
< tr >
2025-11-24 09:08:28 -05:00
< td class = "memname" > gridfire::EnergyDerivatives PyDynamicEngine::calculateEpsDerivatives < / td >
2025-11-04 14:04:26 -05:00
< td > (< / td >
< td class = "paramtype" > const fourdst::composition::Composition & < / td > < td class = "paramname" > < span class = "paramname" > < em > comp< / em > < / span > , < / td >
< / tr >
< tr >
< td class = "paramkey" > < / td >
< td > < / td >
< td class = "paramtype" > double< / td > < td class = "paramname" > < span class = "paramname" > < em > T9< / em > < / span > , < / td >
< / tr >
< tr >
< td class = "paramkey" > < / td >
< td > < / td >
< td class = "paramtype" > double< / td > < td class = "paramname" > < span class = "paramname" > < em > rho< / em > < / span >   ) const< / td >
< / tr >
< / table >
< / td >
< td class = "mlabels-right" >
2025-11-24 09:08:28 -05:00
< span class = "mlabels" > < span class = "mlabel nodiscard" > nodiscard< / span > < span class = "mlabel override" > override< / span > < / span > < / td >
2025-11-04 14:04:26 -05:00
< / tr >
< / table >
< / div > < div class = "memdoc" >
< / div >
< / div >
2025-11-24 09:08:28 -05:00
< a id = "a8facba88b6df6e016ce53a0ff3cff125" name = "a8facba88b6df6e016ce53a0ff3cff125" > < / a >
< h2 class = "memtitle" > < span class = "permalink" > < a href = "#a8facba88b6df6e016ce53a0ff3cff125" > ◆   < / a > < / span > calculateMolarReactionFlow()< / h2 >
2025-07-24 11:10:45 -04:00
< div class = "memitem" >
< div class = "memproto" >
< table class = "mlabels" >
< tr >
< td class = "mlabels-left" >
< table class = "memname" >
< tr >
< td class = "memname" > double PyDynamicEngine::calculateMolarReactionFlow < / td >
< td > (< / td >
< td class = "paramtype" > const < a class = "el" href = "classgridfire_1_1reaction_1_1_reaction.html" > gridfire::reaction::Reaction< / a > & < / td > < td class = "paramname" > < span class = "paramname" > < em > reaction< / em > < / span > , < / td >
< / tr >
< tr >
< td class = "paramkey" > < / td >
< td > < / td >
2025-11-24 09:08:28 -05:00
< td class = "paramtype" > const fourdst::composition::CompositionAbstract & < / td > < td class = "paramname" > < span class = "paramname" > < em > comp< / em > < / span > , < / td >
2025-07-24 11:10:45 -04:00
< / tr >
< tr >
< td class = "paramkey" > < / td >
< td > < / td >
< td class = "paramtype" > double< / td > < td class = "paramname" > < span class = "paramname" > < em > T9< / em > < / span > , < / td >
< / tr >
< tr >
< td class = "paramkey" > < / td >
< td > < / td >
< td class = "paramtype" > double< / td > < td class = "paramname" > < span class = "paramname" > < em > rho< / em > < / span >   ) const< / td >
< / tr >
< / table >
< / td >
< td class = "mlabels-right" >
2025-11-24 09:08:28 -05:00
< span class = "mlabels" > < span class = "mlabel override" > override< / span > < / span > < / td >
2025-07-24 11:10:45 -04:00
< / tr >
< / table >
< / div > < div class = "memdoc" >
< / div >
< / div >
2025-11-24 09:08:28 -05:00
< a id = "a339e7238d290665ae9823c701e0ba32e" name = "a339e7238d290665ae9823c701e0ba32e" > < / a >
< h2 class = "memtitle" > < span class = "permalink" > < a href = "#a339e7238d290665ae9823c701e0ba32e" > ◆   < / a > < / span > calculateRHSAndEnergy()< / h2 >
2025-07-24 11:10:45 -04:00
< div class = "memitem" >
< div class = "memproto" >
< table class = "mlabels" >
< tr >
< td class = "mlabels-left" >
< table class = "memname" >
< tr >
2025-11-24 09:08:28 -05:00
< td class = "memname" > std::expected< gridfire::StepDerivatives< double > , gridfire::expectations::StaleEngineError > PyDynamicEngine::calculateRHSAndEnergy < / td >
2025-07-24 11:10:45 -04:00
< td > (< / td >
2025-11-24 09:08:28 -05:00
< td class = "paramtype" > const fourdst::composition::CompositionAbstract & < / td > < td class = "paramname" > < span class = "paramname" > < em > comp< / em > < / span > , < / td >
2025-07-24 11:10:45 -04:00
< / tr >
< tr >
< td class = "paramkey" > < / td >
< td > < / td >
< td class = "paramtype" > double< / td > < td class = "paramname" > < span class = "paramname" > < em > T9< / em > < / span > , < / td >
< / tr >
< tr >
< td class = "paramkey" > < / td >
< td > < / td >
< td class = "paramtype" > double< / td > < td class = "paramname" > < span class = "paramname" > < em > rho< / em > < / span >   ) const< / td >
< / tr >
< / table >
< / td >
< td class = "mlabels-right" >
2025-11-24 09:08:28 -05:00
< span class = "mlabels" > < span class = "mlabel override" > override< / span > < / span > < / td >
2025-11-04 14:04:26 -05:00
< / tr >
< / table >
< / div > < div class = "memdoc" >
< / div >
< / div >
< a id = "a6c5397f57fb9e115495188a1d2296147" name = "a6c5397f57fb9e115495188a1d2296147" > < / a >
< h2 class = "memtitle" > < span class = "permalink" > < a href = "#a6c5397f57fb9e115495188a1d2296147" > ◆   < / a > < / span > collectComposition()< / h2 >
< div class = "memitem" >
< div class = "memproto" >
< table class = "mlabels" >
< tr >
< td class = "mlabels-left" >
< table class = "memname" >
< tr >
< td class = "memname" > fourdst::composition::Composition PyDynamicEngine::collectComposition < / td >
< td > (< / td >
< td class = "paramtype" > fourdst::composition::Composition & < / td > < td class = "paramname" > < span class = "paramname" > < em > comp< / em > < / span > < / td > < td > )< / td >
< td > const< / td >
< / tr >
< / table >
< / td >
< td class = "mlabels-right" >
2025-11-24 09:08:28 -05:00
< span class = "mlabels" > < span class = "mlabel override" > override< / span > < / span > < / td >
2025-07-24 11:10:45 -04:00
< / tr >
< / table >
< / div > < div class = "memdoc" >
< / div >
< / div >
2025-11-04 14:04:26 -05:00
< a id = "a2a63d0132254983a2143f31e863a5c18" name = "a2a63d0132254983a2143f31e863a5c18" > < / a >
< h2 class = "memtitle" > < span class = "permalink" > < a href = "#a2a63d0132254983a2143f31e863a5c18" > ◆   < / a > < / span > generateJacobianMatrix() < span class = "overload" > [1/3]< / span > < / h2 >
2025-07-24 11:10:45 -04:00
< div class = "memitem" >
< div class = "memproto" >
< table class = "mlabels" >
< tr >
< td class = "mlabels-left" >
< table class = "memname" >
< tr >
< td class = "memname" > void PyDynamicEngine::generateJacobianMatrix < / td >
< td > (< / td >
2025-11-04 14:04:26 -05:00
< td class = "paramtype" > const fourdst::composition::Composition & < / td > < td class = "paramname" > < span class = "paramname" > < em > comp< / em > < / span > , < / td >
2025-07-24 11:10:45 -04:00
< / tr >
< tr >
< td class = "paramkey" > < / td >
< td > < / td >
< td class = "paramtype" > double< / td > < td class = "paramname" > < span class = "paramname" > < em > T9< / em > < / span > , < / td >
< / tr >
< tr >
< td class = "paramkey" > < / td >
< td > < / td >
< td class = "paramtype" > double< / td > < td class = "paramname" > < span class = "paramname" > < em > rho< / em > < / span >   ) const< / td >
< / tr >
< / table >
< / td >
< td class = "mlabels-right" >
2025-11-24 09:08:28 -05:00
< span class = "mlabels" > < span class = "mlabel override" > override< / span > < / span > < / td >
2025-07-24 11:10:45 -04:00
< / tr >
< / table >
< / div > < div class = "memdoc" >
< / div >
< / div >
2025-11-04 14:04:26 -05:00
< a id = "a36f2dbd2278608fe8a4ef7f08d7e4963" name = "a36f2dbd2278608fe8a4ef7f08d7e4963" > < / a >
< h2 class = "memtitle" > < span class = "permalink" > < a href = "#a36f2dbd2278608fe8a4ef7f08d7e4963" > ◆   < / a > < / span > generateJacobianMatrix() < span class = "overload" > [2/3]< / span > < / h2 >
2025-07-24 11:10:45 -04:00
< div class = "memitem" >
< div class = "memproto" >
< table class = "mlabels" >
< tr >
< td class = "mlabels-left" >
< table class = "memname" >
< tr >
< td class = "memname" > void PyDynamicEngine::generateJacobianMatrix < / td >
< td > (< / td >
2025-11-04 14:04:26 -05:00
< td class = "paramtype" > const fourdst::composition::Composition & < / td > < td class = "paramname" > < span class = "paramname" > < em > comp< / em > < / span > , < / td >
2025-07-24 11:10:45 -04:00
< / tr >
< tr >
< td class = "paramkey" > < / td >
< td > < / td >
< td class = "paramtype" > double< / td > < td class = "paramname" > < span class = "paramname" > < em > T9< / em > < / span > , < / td >
< / tr >
< tr >
< td class = "paramkey" > < / td >
< td > < / td >
< td class = "paramtype" > double< / td > < td class = "paramname" > < span class = "paramname" > < em > rho< / em > < / span > , < / td >
< / tr >
< tr >
< td class = "paramkey" > < / td >
< td > < / td >
2025-11-24 09:08:28 -05:00
< td class = "paramtype" > const gridfire::SparsityPattern & < / td > < td class = "paramname" > < span class = "paramname" > < em > sparsityPattern< / em > < / span >   ) const< / td >
2025-07-24 11:10:45 -04:00
< / tr >
< / table >
< / td >
< td class = "mlabels-right" >
2025-11-24 09:08:28 -05:00
< span class = "mlabels" > < span class = "mlabel override" > override< / span > < / span > < / td >
2025-11-04 14:04:26 -05:00
< / tr >
< / table >
< / div > < div class = "memdoc" >
< / div >
< / div >
2025-11-24 09:08:28 -05:00
< a id = "a2c0a465848ed6da8d3aaef5f6824375d" name = "a2c0a465848ed6da8d3aaef5f6824375d" > < / a >
< h2 class = "memtitle" > < span class = "permalink" > < a href = "#a2c0a465848ed6da8d3aaef5f6824375d" > ◆   < / a > < / span > generateJacobianMatrix() < span class = "overload" > [3/3]< / span > < / h2 >
2025-11-04 14:04:26 -05:00
< div class = "memitem" >
< div class = "memproto" >
< table class = "mlabels" >
< tr >
< td class = "mlabels-left" >
< table class = "memname" >
< tr >
< td class = "memname" > void PyDynamicEngine::generateJacobianMatrix < / td >
< td > (< / td >
2025-11-24 09:08:28 -05:00
< td class = "paramtype" > const fourdst::composition::CompositionAbstract & < / td > < td class = "paramname" > < span class = "paramname" > < em > comp< / em > < / span > , < / td >
2025-11-04 14:04:26 -05:00
< / tr >
< tr >
< td class = "paramkey" > < / td >
< td > < / td >
< td class = "paramtype" > double< / td > < td class = "paramname" > < span class = "paramname" > < em > T9< / em > < / span > , < / td >
< / tr >
< tr >
< td class = "paramkey" > < / td >
< td > < / td >
< td class = "paramtype" > double< / td > < td class = "paramname" > < span class = "paramname" > < em > rho< / em > < / span > , < / td >
< / tr >
< tr >
< td class = "paramkey" > < / td >
< td > < / td >
< td class = "paramtype" > const std::vector< fourdst::atomic::Species > & < / td > < td class = "paramname" > < span class = "paramname" > < em > activeSpecies< / em > < / span >   ) const< / td >
< / tr >
< / table >
< / td >
< td class = "mlabels-right" >
2025-11-24 09:08:28 -05:00
< span class = "mlabels" > < span class = "mlabel override" > override< / span > < / span > < / td >
2025-07-24 11:10:45 -04:00
< / tr >
< / table >
< / div > < div class = "memdoc" >
< / div >
< / div >
< a id = "a2066649ca11a869c054079ea12d8d0e9" name = "a2066649ca11a869c054079ea12d8d0e9" > < / a >
< h2 class = "memtitle" > < span class = "permalink" > < a href = "#a2066649ca11a869c054079ea12d8d0e9" > ◆   < / a > < / span > generateStoichiometryMatrix()< / h2 >
< div class = "memitem" >
< div class = "memproto" >
< table class = "mlabels" >
< tr >
< td class = "mlabels-left" >
< table class = "memname" >
< tr >
< td class = "memname" > void PyDynamicEngine::generateStoichiometryMatrix < / td >
< td > (< / td >
< td class = "paramname" > < span class = "paramname" > < em > < / em > < / span > < / td > < td > )< / td >
< td > < / td >
< / tr >
< / table >
< / td >
< td class = "mlabels-right" >
2025-11-24 09:08:28 -05:00
< span class = "mlabels" > < span class = "mlabel override" > override< / span > < / span > < / td >
2025-07-24 11:10:45 -04:00
< / tr >
< / table >
< / div > < div class = "memdoc" >
< / div >
< / div >
< a id = "adba68716d832b6100e08d32fbc36f13c" name = "adba68716d832b6100e08d32fbc36f13c" > < / a >
< h2 class = "memtitle" > < span class = "permalink" > < a href = "#adba68716d832b6100e08d32fbc36f13c" > ◆   < / a > < / span > getDepth()< / h2 >
< div class = "memitem" >
< div class = "memproto" >
< table class = "mlabels" >
< tr >
< td class = "mlabels-left" >
< table class = "memname" >
< tr >
2025-11-24 09:08:28 -05:00
< td class = "memname" > gridfire::BuildDepthType PyDynamicEngine::getDepth < / td >
2025-07-24 11:10:45 -04:00
< td > (< / td >
< td class = "paramname" > < span class = "paramname" > < em > < / em > < / span > < / td > < td > )< / td >
< td > const< / td >
< / tr >
< / table >
< / td >
< td class = "mlabels-right" >
2025-11-24 09:08:28 -05:00
< span class = "mlabels" > < span class = "mlabel inline" > inline< / span > < span class = "mlabel override" > override< / span > < / span > < / td >
2025-07-24 11:10:45 -04:00
< / tr >
< / table >
< / div > < div class = "memdoc" >
< / div >
< / div >
2025-11-04 14:04:26 -05:00
< a id = "a63bbe8f6d3849e99dd41b6d9613ff1f0" name = "a63bbe8f6d3849e99dd41b6d9613ff1f0" > < / a >
< h2 class = "memtitle" > < span class = "permalink" > < a href = "#a63bbe8f6d3849e99dd41b6d9613ff1f0" > ◆   < / a > < / span > getJacobianMatrixEntry()< / h2 >
2025-07-24 11:10:45 -04:00
< div class = "memitem" >
< div class = "memproto" >
< table class = "mlabels" >
< tr >
< td class = "mlabels-left" >
< table class = "memname" >
< tr >
< td class = "memname" > double PyDynamicEngine::getJacobianMatrixEntry < / td >
< td > (< / td >
2025-11-04 14:04:26 -05:00
< td class = "paramtype" > const fourdst::atomic::Species & < / td > < td class = "paramname" > < span class = "paramname" > < em > rowSpecies< / em > < / span > , < / td >
2025-07-24 11:10:45 -04:00
< / tr >
< tr >
< td class = "paramkey" > < / td >
< td > < / td >
2025-11-04 14:04:26 -05:00
< td class = "paramtype" > const fourdst::atomic::Species & < / td > < td class = "paramname" > < span class = "paramname" > < em > colSpecies< / em > < / span >   ) const< / td >
2025-07-24 11:10:45 -04:00
< / tr >
< / table >
< / td >
< td class = "mlabels-right" >
2025-11-24 09:08:28 -05:00
< span class = "mlabels" > < span class = "mlabel override" > override< / span > < / span > < / td >
2025-07-24 11:10:45 -04:00
< / tr >
< / table >
< / div > < div class = "memdoc" >
< / div >
< / div >
2025-10-08 11:17:09 -04:00
< a id = "a1d5143640666631501cf229bc491516e" name = "a1d5143640666631501cf229bc491516e" > < / a >
< h2 class = "memtitle" > < span class = "permalink" > < a href = "#a1d5143640666631501cf229bc491516e" > ◆   < / a > < / span > getNetworkReactions()< / h2 >
2025-07-24 11:10:45 -04:00
< div class = "memitem" >
< div class = "memproto" >
< table class = "mlabels" >
< tr >
< td class = "mlabels-left" >
< table class = "memname" >
< tr >
2025-10-08 11:17:09 -04:00
< td class = "memname" > const < a class = "el" href = "classgridfire_1_1reaction_1_1_reaction_set.html" > gridfire::reaction::ReactionSet< / a > & PyDynamicEngine::getNetworkReactions < / td >
2025-07-24 11:10:45 -04:00
< td > (< / td >
< td class = "paramname" > < span class = "paramname" > < em > < / em > < / span > < / td > < td > )< / td >
< td > const< / td >
< / tr >
< / table >
< / td >
< td class = "mlabels-right" >
2025-11-24 09:08:28 -05:00
< span class = "mlabels" > < span class = "mlabel override" > override< / span > < / span > < / td >
2025-07-24 11:10:45 -04:00
< / tr >
< / table >
< / div > < div class = "memdoc" >
< / div >
< / div >
< a id = "afc745e7ab5da5d8b3cf916044515cd7d" name = "afc745e7ab5da5d8b3cf916044515cd7d" > < / a >
< h2 class = "memtitle" > < span class = "permalink" > < a href = "#afc745e7ab5da5d8b3cf916044515cd7d" > ◆   < / a > < / span > getNetworkSpecies()< / h2 >
< div class = "memitem" >
< div class = "memproto" >
< table class = "mlabels" >
< tr >
< td class = "mlabels-left" >
< table class = "memname" >
< tr >
< td class = "memname" > const std::vector< fourdst::atomic::Species > & PyDynamicEngine::getNetworkSpecies < / td >
< td > (< / td >
< td class = "paramname" > < span class = "paramname" > < em > < / em > < / span > < / td > < td > )< / td >
< td > const< / td >
< / tr >
< / table >
< / td >
< td class = "mlabels-right" >
2025-11-24 09:08:28 -05:00
< span class = "mlabels" > < span class = "mlabel override" > override< / span > < / span > < / td >
2025-07-24 11:10:45 -04:00
< / tr >
< / table >
< / div > < div class = "memdoc" >
< p > < a class = "el" href = "class_py_dynamic_engine.html" > PyDynamicEngine< / a > Implementation ///. < / p >
< / div >
< / div >
< a id = "ab4cfdca5e15957c5cef75ffa6dedeee5" name = "ab4cfdca5e15957c5cef75ffa6dedeee5" > < / a >
< h2 class = "memtitle" > < span class = "permalink" > < a href = "#ab4cfdca5e15957c5cef75ffa6dedeee5" > ◆   < / a > < / span > getScreeningModel()< / h2 >
< div class = "memitem" >
< div class = "memproto" >
< table class = "mlabels" >
< tr >
< td class = "mlabels-left" >
< table class = "memname" >
< tr >
< td class = "memname" > < a class = "el" href = "namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25" > gridfire::screening::ScreeningType< / a > PyDynamicEngine::getScreeningModel < / td >
< td > (< / td >
< td class = "paramname" > < span class = "paramname" > < em > < / em > < / span > < / td > < td > )< / td >
< td > const< / td >
< / tr >
< / table >
< / td >
< td class = "mlabels-right" >
2025-11-24 09:08:28 -05:00
< span class = "mlabels" > < span class = "mlabel override" > override< / span > < / span > < / td >
2025-07-24 11:10:45 -04:00
< / tr >
< / table >
< / div > < div class = "memdoc" >
< / div >
< / div >
2025-11-04 14:04:26 -05:00
< a id = "a16c27e5af29ddf187e5ab82a6e6db57b" name = "a16c27e5af29ddf187e5ab82a6e6db57b" > < / a >
< h2 class = "memtitle" > < span class = "permalink" > < a href = "#a16c27e5af29ddf187e5ab82a6e6db57b" > ◆   < / a > < / span > getSpeciesDestructionTimescales()< / h2 >
2025-07-24 11:10:45 -04:00
< div class = "memitem" >
< div class = "memproto" >
< table class = "mlabels" >
< tr >
< td class = "mlabels-left" >
< table class = "memname" >
< tr >
2025-11-24 09:08:28 -05:00
< td class = "memname" > std::expected< std::unordered_map< fourdst::atomic::Species, double > , gridfire::expectations::StaleEngineError > PyDynamicEngine::getSpeciesDestructionTimescales < / td >
2025-07-24 11:10:45 -04:00
< td > (< / td >
2025-11-04 14:04:26 -05:00
< td class = "paramtype" > const fourdst::composition::Composition & < / td > < td class = "paramname" > < span class = "paramname" > < em > comp< / em > < / span > , < / td >
2025-07-24 11:10:45 -04:00
< / tr >
< tr >
< td class = "paramkey" > < / td >
< td > < / td >
< td class = "paramtype" > double< / td > < td class = "paramname" > < span class = "paramname" > < em > T9< / em > < / span > , < / td >
< / tr >
< tr >
< td class = "paramkey" > < / td >
< td > < / td >
< td class = "paramtype" > double< / td > < td class = "paramname" > < span class = "paramname" > < em > rho< / em > < / span >   ) const< / td >
< / tr >
< / table >
< / td >
< td class = "mlabels-right" >
2025-11-24 09:08:28 -05:00
< span class = "mlabels" > < span class = "mlabel override" > override< / span > < / span > < / td >
2025-07-24 11:10:45 -04:00
< / tr >
< / table >
< / div > < div class = "memdoc" >
< / div >
< / div >
2025-10-08 11:17:09 -04:00
< a id = "a95d10a7b240d543a1bc6c67ddf2dc8e0" name = "a95d10a7b240d543a1bc6c67ddf2dc8e0" > < / a >
< h2 class = "memtitle" > < span class = "permalink" > < a href = "#a95d10a7b240d543a1bc6c67ddf2dc8e0" > ◆   < / a > < / span > getSpeciesIndex()< / h2 >
2025-07-24 11:10:45 -04:00
< div class = "memitem" >
< div class = "memproto" >
< table class = "mlabels" >
< tr >
< td class = "mlabels-left" >
< table class = "memname" >
< tr >
2025-10-08 11:17:09 -04:00
< td class = "memname" > size_t PyDynamicEngine::getSpeciesIndex < / td >
2025-07-24 11:10:45 -04:00
< td > (< / td >
< td class = "paramtype" > const fourdst::atomic::Species & < / td > < td class = "paramname" > < span class = "paramname" > < em > species< / em > < / span > < / td > < td > )< / td >
< td > const< / td >
< / tr >
< / table >
< / td >
< td class = "mlabels-right" >
2025-11-24 09:08:28 -05:00
< span class = "mlabels" > < span class = "mlabel override" > override< / span > < / span > < / td >
2025-07-24 11:10:45 -04:00
< / tr >
< / table >
< / div > < div class = "memdoc" >
< / div >
< / div >
2025-11-24 09:08:28 -05:00
< a id = "a8bbf2956e0a3d01065c14e74cdc71626" name = "a8bbf2956e0a3d01065c14e74cdc71626" > < / a >
< h2 class = "memtitle" > < span class = "permalink" > < a href = "#a8bbf2956e0a3d01065c14e74cdc71626" > ◆   < / a > < / span > getSpeciesTimescales()< / h2 >
2025-07-24 11:10:45 -04:00
< div class = "memitem" >
< div class = "memproto" >
< table class = "mlabels" >
< tr >
< td class = "mlabels-left" >
< table class = "memname" >
< tr >
2025-11-24 09:08:28 -05:00
< td class = "memname" > std::expected< std::unordered_map< fourdst::atomic::Species, double > , gridfire::expectations::StaleEngineError > PyDynamicEngine::getSpeciesTimescales < / td >
2025-07-24 11:10:45 -04:00
< td > (< / td >
2025-11-24 09:08:28 -05:00
< td class = "paramtype" > const fourdst::composition::CompositionAbstract & < / td > < td class = "paramname" > < span class = "paramname" > < em > comp< / em > < / span > , < / td >
2025-07-24 11:10:45 -04:00
< / tr >
< tr >
< td class = "paramkey" > < / td >
< td > < / td >
< td class = "paramtype" > double< / td > < td class = "paramname" > < span class = "paramname" > < em > T9< / em > < / span > , < / td >
< / tr >
< tr >
< td class = "paramkey" > < / td >
< td > < / td >
< td class = "paramtype" > double< / td > < td class = "paramname" > < span class = "paramname" > < em > rho< / em > < / span >   ) const< / td >
< / tr >
< / table >
< / td >
< td class = "mlabels-right" >
2025-11-24 09:08:28 -05:00
< span class = "mlabels" > < span class = "mlabel override" > override< / span > < / span > < / td >
2025-07-24 11:10:45 -04:00
< / tr >
< / table >
< / div > < div class = "memdoc" >
< / div >
< / div >
2025-11-04 14:04:26 -05:00
< a id = "a3dd5cf419f25e76e144af35df15a2067" name = "a3dd5cf419f25e76e144af35df15a2067" > < / a >
< h2 class = "memtitle" > < span class = "permalink" > < a href = "#a3dd5cf419f25e76e144af35df15a2067" > ◆   < / a > < / span > getStoichiometryMatrixEntry()< / h2 >
2025-07-24 11:10:45 -04:00
< div class = "memitem" >
< div class = "memproto" >
< table class = "mlabels" >
< tr >
< td class = "mlabels-left" >
< table class = "memname" >
< tr >
< td class = "memname" > int PyDynamicEngine::getStoichiometryMatrixEntry < / td >
< td > (< / td >
2025-11-04 14:04:26 -05:00
< td class = "paramtype" > const fourdst::atomic::Species & < / td > < td class = "paramname" > < span class = "paramname" > < em > species< / em > < / span > , < / td >
2025-07-24 11:10:45 -04:00
< / tr >
< tr >
< td class = "paramkey" > < / td >
< td > < / td >
2025-11-04 14:04:26 -05:00
< td class = "paramtype" > const < a class = "el" href = "classgridfire_1_1reaction_1_1_reaction.html" > gridfire::reaction::Reaction< / a > & < / td > < td class = "paramname" > < span class = "paramname" > < em > reaction< / em > < / span >   ) const< / td >
2025-07-24 11:10:45 -04:00
< / tr >
< / table >
< / td >
< td class = "mlabels-right" >
2025-11-24 09:08:28 -05:00
< span class = "mlabels" > < span class = "mlabel override" > override< / span > < / span > < / td >
2025-07-24 11:10:45 -04:00
< / tr >
< / table >
< / div > < div class = "memdoc" >
< / div >
< / div >
< a id = "a55bf19ed7534a312a36faf74753f7b14" name = "a55bf19ed7534a312a36faf74753f7b14" > < / a >
< h2 class = "memtitle" > < span class = "permalink" > < a href = "#a55bf19ed7534a312a36faf74753f7b14" > ◆   < / a > < / span > isStale()< / h2 >
< div class = "memitem" >
< div class = "memproto" >
< table class = "mlabels" >
< tr >
< td class = "mlabels-left" >
< table class = "memname" >
< tr >
< td class = "memname" > bool PyDynamicEngine::isStale < / td >
< td > (< / td >
< td class = "paramtype" > const < a class = "el" href = "structgridfire_1_1_net_in.html" > gridfire::NetIn< / a > & < / td > < td class = "paramname" > < span class = "paramname" > < em > netIn< / em > < / span > < / td > < td > )< / td >
< td > < / td >
< / tr >
< / table >
< / td >
< td class = "mlabels-right" >
2025-11-24 09:08:28 -05:00
< span class = "mlabels" > < span class = "mlabel override" > override< / span > < / span > < / td >
2025-07-24 11:10:45 -04:00
< / tr >
< / table >
< / div > < div class = "memdoc" >
< / div >
< / div >
< a id = "a61bb4b430fe740cfb2c24e5cc673e4ac" name = "a61bb4b430fe740cfb2c24e5cc673e4ac" > < / a >
< h2 class = "memtitle" > < span class = "permalink" > < a href = "#a61bb4b430fe740cfb2c24e5cc673e4ac" > ◆   < / a > < / span > mapNetInToMolarAbundanceVector()< / h2 >
< div class = "memitem" >
< div class = "memproto" >
< table class = "mlabels" >
< tr >
< td class = "mlabels-left" >
< table class = "memname" >
< tr >
< td class = "memname" > std::vector< double > PyDynamicEngine::mapNetInToMolarAbundanceVector < / td >
< td > (< / td >
< td class = "paramtype" > const < a class = "el" href = "structgridfire_1_1_net_in.html" > gridfire::NetIn< / a > & < / td > < td class = "paramname" > < span class = "paramname" > < em > netIn< / em > < / span > < / td > < td > )< / td >
< td > const< / td >
< / tr >
< / table >
< / td >
< td class = "mlabels-right" >
2025-11-24 09:08:28 -05:00
< span class = "mlabels" > < span class = "mlabel override" > override< / span > < / span > < / td >
2025-07-24 11:10:45 -04:00
< / tr >
< / table >
< / div > < div class = "memdoc" >
< / div >
< / div >
< a id = "ac22a10412be6649bf379e6d61113c878" name = "ac22a10412be6649bf379e6d61113c878" > < / a >
< h2 class = "memtitle" > < span class = "permalink" > < a href = "#ac22a10412be6649bf379e6d61113c878" > ◆   < / a > < / span > primeEngine()< / h2 >
< div class = "memitem" >
< div class = "memproto" >
< table class = "mlabels" >
< tr >
< td class = "mlabels-left" >
< table class = "memname" >
< tr >
2025-11-24 09:08:28 -05:00
< td class = "memname" > gridfire::PrimingReport PyDynamicEngine::primeEngine < / td >
2025-07-24 11:10:45 -04:00
< td > (< / td >
< td class = "paramtype" > const < a class = "el" href = "structgridfire_1_1_net_in.html" > gridfire::NetIn< / a > & < / td > < td class = "paramname" > < span class = "paramname" > < em > netIn< / em > < / span > < / td > < td > )< / td >
< td > < / td >
< / tr >
< / table >
< / td >
< td class = "mlabels-right" >
2025-11-24 09:08:28 -05:00
< span class = "mlabels" > < span class = "mlabel override" > override< / span > < / span > < / td >
2025-07-24 11:10:45 -04:00
< / tr >
< / table >
< / div > < div class = "memdoc" >
< / div >
< / div >
2025-11-24 09:08:28 -05:00
< a id = "a8e39a86c2ba1ac7f1669362554f07fcf" name = "a8e39a86c2ba1ac7f1669362554f07fcf" > < / a >
< h2 class = "memtitle" > < span class = "permalink" > < a href = "#a8e39a86c2ba1ac7f1669362554f07fcf" > ◆   < / a > < / span > rebuild()< / h2 >
2025-07-24 11:10:45 -04:00
< div class = "memitem" >
< div class = "memproto" >
< table class = "mlabels" >
< tr >
< td class = "mlabels-left" >
< table class = "memname" >
< tr >
< td class = "memname" > void PyDynamicEngine::rebuild < / td >
< td > (< / td >
2025-11-24 09:08:28 -05:00
< td class = "paramtype" > const fourdst::composition::CompositionAbstract & < / td > < td class = "paramname" > < span class = "paramname" > < em > comp< / em > < / span > , < / td >
2025-07-24 11:10:45 -04:00
< / tr >
< tr >
< td class = "paramkey" > < / td >
< td > < / td >
2025-11-24 09:08:28 -05:00
< td class = "paramtype" > gridfire::BuildDepthType< / td > < td class = "paramname" > < span class = "paramname" > < em > depth< / em > < / span >   )< / td >
2025-07-24 11:10:45 -04:00
< / tr >
< / table >
< / td >
< td class = "mlabels-right" >
2025-11-24 09:08:28 -05:00
< span class = "mlabels" > < span class = "mlabel inline" > inline< / span > < span class = "mlabel override" > override< / span > < / span > < / td >
2025-07-24 11:10:45 -04:00
< / tr >
< / table >
< / div > < div class = "memdoc" >
< / div >
< / div >
2025-10-08 11:17:09 -04:00
< a id = "af469cba3be850d53f659ec173f0eb4e4" name = "af469cba3be850d53f659ec173f0eb4e4" > < / a >
< h2 class = "memtitle" > < span class = "permalink" > < a href = "#af469cba3be850d53f659ec173f0eb4e4" > ◆   < / a > < / span > setNetworkReactions()< / h2 >
2025-07-24 11:10:45 -04:00
< div class = "memitem" >
< div class = "memproto" >
< table class = "mlabels" >
< tr >
< td class = "mlabels-left" >
< table class = "memname" >
< tr >
< td class = "memname" > void PyDynamicEngine::setNetworkReactions < / td >
< td > (< / td >
2025-10-08 11:17:09 -04:00
< td class = "paramtype" > const < a class = "el" href = "classgridfire_1_1reaction_1_1_reaction_set.html" > gridfire::reaction::ReactionSet< / a > & < / td > < td class = "paramname" > < span class = "paramname" > < em > reactions< / em > < / span > < / td > < td > )< / td >
2025-07-24 11:10:45 -04:00
< td > < / td >
< / tr >
< / table >
< / td >
< td class = "mlabels-right" >
2025-11-24 09:08:28 -05:00
< span class = "mlabels" > < span class = "mlabel override" > override< / span > < / span > < / td >
2025-07-24 11:10:45 -04:00
< / tr >
< / table >
< / div > < div class = "memdoc" >
< / div >
< / div >
< a id = "afa3abfd612033336a656f092721c14ac" name = "afa3abfd612033336a656f092721c14ac" > < / a >
< h2 class = "memtitle" > < span class = "permalink" > < a href = "#afa3abfd612033336a656f092721c14ac" > ◆   < / a > < / span > setScreeningModel()< / h2 >
< div class = "memitem" >
< div class = "memproto" >
< table class = "mlabels" >
< tr >
< td class = "mlabels-left" >
< table class = "memname" >
< tr >
< td class = "memname" > void PyDynamicEngine::setScreeningModel < / td >
< td > (< / td >
< td class = "paramtype" > < a class = "el" href = "namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25" > gridfire::screening::ScreeningType< / a > < / td > < td class = "paramname" > < span class = "paramname" > < em > model< / em > < / span > < / td > < td > )< / td >
< td > < / td >
< / tr >
< / table >
< / td >
< td class = "mlabels-right" >
2025-11-24 09:08:28 -05:00
< span class = "mlabels" > < span class = "mlabel override" > override< / span > < / span > < / td >
2025-07-24 11:10:45 -04:00
< / tr >
< / table >
< / div > < div class = "memdoc" >
< / div >
< / div >
< a id = "af8e6a8cd44f278535d7bcc9a896d6da8" name = "af8e6a8cd44f278535d7bcc9a896d6da8" > < / a >
< h2 class = "memtitle" > < span class = "permalink" > < a href = "#af8e6a8cd44f278535d7bcc9a896d6da8" > ◆   < / a > < / span > update()< / h2 >
< div class = "memitem" >
< div class = "memproto" >
< table class = "mlabels" >
< tr >
< td class = "mlabels-left" >
< table class = "memname" >
< tr >
< td class = "memname" > fourdst::composition::Composition PyDynamicEngine::update < / td >
< td > (< / td >
< td class = "paramtype" > const < a class = "el" href = "structgridfire_1_1_net_in.html" > gridfire::NetIn< / a > & < / td > < td class = "paramname" > < span class = "paramname" > < em > netIn< / em > < / span > < / td > < td > )< / td >
< td > < / td >
< / tr >
< / table >
< / td >
< td class = "mlabels-right" >
2025-11-24 09:08:28 -05:00
< span class = "mlabels" > < span class = "mlabel override" > override< / span > < / span > < / td >
2025-07-24 11:10:45 -04:00
< / tr >
< / table >
< / div > < div class = "memdoc" >
< / div >
< / div >
< h2 class = "groupheader" > Member Data Documentation< / h2 >
< a id = "a2246382b1c98ba69cdb419bba63a6d03" name = "a2246382b1c98ba69cdb419bba63a6d03" > < / a >
< h2 class = "memtitle" > < span class = "permalink" > < a href = "#a2246382b1c98ba69cdb419bba63a6d03" > ◆   < / a > < / span > m_species_cache< / h2 >
< div class = "memitem" >
< div class = "memproto" >
< table class = "mlabels" >
< tr >
< td class = "mlabels-left" >
< table class = "memname" >
< tr >
< td class = "memname" > std::vector< fourdst::atomic::Species> PyDynamicEngine::m_species_cache< / td >
< / tr >
< / table >
< / td >
< td class = "mlabels-right" >
< span class = "mlabels" > < span class = "mlabel mutable" > mutable< / span > < span class = "mlabel private" > private< / span > < / span > < / td >
< / tr >
< / table >
< / div > < div class = "memdoc" >
< / div >
< / div >
< hr / > The documentation for this class was generated from the following files:< ul >
2025-07-31 10:54:31 -04:00
< li > src/python/engine/trampoline/< a class = "el" href = "py__engine_8h.html" > py_engine.h< / a > < / li >
< li > src/python/engine/trampoline/< a class = "el" href = "py__engine_8cpp.html" > py_engine.cpp< / a > < / li >
2025-07-24 11:10:45 -04:00
< / ul >
< / div > <!-- contents -->
< / div > <!-- doc - content -->
<!-- start footer part -->
< div id = "nav-path" class = "navpath" > <!-- id is needed for treeview function! -->
< ul >
< li class = "navelem" > < a class = "el" href = "class_py_dynamic_engine.html" > PyDynamicEngine< / a > < / li >
< li class = "footer" > Generated by < a href = "https://www.doxygen.org/index.html" > < img class = "footer" src = "doxygen.svg" width = "104" height = "31" alt = "doxygen" / > < / a > 1.13.2 < / li >
< / ul >
< / div >
< / body >
< / html >
