GridFire/docs/html/classgridfire_1_1engine_1_1DynamicEngine__inherit__graph.svg

<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN"
 "http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd">
<!-- Generated by graphviz version 2.43.0 (0)
 -->
<!-- Title: gridfire::engine::DynamicEngine Pages: 1 -->
<!--zoomable 210 -->

<svg id="main" version="1.1" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" xml:space="preserve" onload="init(evt)">
<style type="text/css"><![CDATA[
.node, .edge {opacity: 0.7;}
.node.selected, .edge.selected {opacity: 1;}
.edge:hover path { stroke: red; }
.edge:hover polygon { stroke: red; fill: red; }
]]></style>

<defs>
  <circle id="rim" cx="0" cy="0" r="7"/>
  <circle id="rim2" cx="0" cy="0" r="3.5"/>
  <g id="zoomPlus">
    <use xlink:href="#rim" fill="#404040"><set attributeName="fill" to="#808080" begin="zoomplus.mouseover" end="zoomplus.mouseout"/></use>
    <path d="M-4,0h8M0,-4v8" fill="none" stroke="white" stroke-width="1.5" pointer-events="none"/>
  </g>
  <g id="zoomMin">
    <use xlink:href="#rim" fill="#404040"><set attributeName="fill" to="#808080" begin="zoomminus.mouseover" end="zoomminus.mouseout"/></use>
    <path d="M-4,0h8" fill="none" stroke="white" stroke-width="1.5" pointer-events="none"/>
  </g>
  <g id="arrowUp" transform="translate(30 24)">
    <use xlink:href="#rim"/>
    <path pointer-events="none" fill="none" stroke="white" stroke-width="1.5" d="M0,-3.0v7 M-2.5,-0.5L0,-3.0L2.5,-0.5"/>
  </g>
  <g id="arrowRight" transform="rotate(90) translate(36 -43)">
    <use xlink:href="#rim"/>
    <path pointer-events="none" fill="none" stroke="white" stroke-width="1.5" d="M0,-3.0v7 M-2.5,-0.5L0,-3.0L2.5,-0.5"/>
  </g>
  <g id="arrowDown" transform="rotate(180) translate(-30 -48)">
    <use xlink:href="#rim"/>
    <path pointer-events="none" fill="none" stroke="white" stroke-width="1.5" d="M0,-3.0v7 M-2.5,-0.5L0,-3.0L2.5,-0.5"/>
  </g>
  <g id="arrowLeft" transform="rotate(270) translate(-36 17)">
    <use xlink:href="#rim"/>
    <path pointer-events="none" fill="none" stroke="white" stroke-width="1.5" d="M0,-3.0v7 M-2.5,-0.5L0,-3.0L2.5,-0.5"/>
  </g>
  <g id="resetDef">
    <use xlink:href="#rim2" fill="#404040"><set attributeName="fill" to="#808080" begin="reset.mouseover" end="reset.mouseout"/></use>
  </g>
</defs>
<script type="application/ecmascript">
var viewWidth = 694;
var viewHeight = 210;
var sectionId = 'dynsection-0';
</script>
<script type="application/ecmascript" xlink:href="svg.min.js"/>
<svg id="graph" class="graph">
<g id="viewport">
<title>gridfire::engine::DynamicEngine</title>
<!-- Node1 -->
<g id="Node000001" class="node">
<title>Node1</title>
<g id="a_Node000001"><a xlink:title="Abstract class for engines supporting Jacobian and stoichiometry operations.">
<polygon fill="#999999" stroke="#666666" points="305,-116 165,-116 165,-86 305,-86 305,-116"/>
<text text-anchor="start" x="173" y="-104" font-family="Helvetica,sans-Serif" font-size="10.00">gridfire::engine::Dynamic</text>
<text text-anchor="middle" x="235" y="-93" font-family="Helvetica,sans-Serif" font-size="10.00">Engine</text>
</a>
</g>
</g>
<!-- Node3 -->
<g id="Node000003" class="node">
<title>Node3</title>
<g id="a_Node000003"><a xlink:href="classPyDynamicEngine.html" target="_top" xlink:title=" ">
<polygon fill="white" stroke="#666666" points="472.5,-201.5 367.5,-201.5 367.5,-182.5 472.5,-182.5 472.5,-201.5"/>
<text text-anchor="middle" x="420" y="-189.5" font-family="Helvetica,sans-Serif" font-size="10.00">PyDynamicEngine</text>
</a>
</g>
</g>
<!-- Node1&#45;&gt;Node3 -->
<g id="edge2_Node000001_Node000003" class="edge">
<title>Node1&#45;&gt;Node3</title>
<g id="a_edge2_Node000001_Node000003"><a xlink:title=" ">
<path fill="none" stroke="#63b8ff" d="M261.59,-122.49C281.93,-138.56 311.73,-159.93 341,-173 349.53,-176.81 358.93,-179.92 368.17,-182.45"/>
<polygon fill="#63b8ff" stroke="#63b8ff" points="263.73,-119.73 253.75,-116.19 259.35,-125.18 263.73,-119.73"/>
</a>
</g>
</g>
<!-- Node4 -->
<g id="Node000004" class="node">
<title>Node4</title>
<g id="a_Node000004"><a xlink:href="classgridfire_1_1engine_1_1AdaptiveEngineView.html" target="_top" xlink:title="An engine view that dynamically adapts the reaction network based on runtime conditions.">
<polygon fill="white" stroke="#666666" points="490,-164 350,-164 350,-134 490,-134 490,-164"/>
<text text-anchor="start" x="358" y="-152" font-family="Helvetica,sans-Serif" font-size="10.00">gridfire::engine::Adaptive</text>
<text text-anchor="middle" x="420" y="-141" font-family="Helvetica,sans-Serif" font-size="10.00">EngineView</text>
</a>
</g>
</g>
<!-- Node1&#45;&gt;Node4 -->
<g id="edge3_Node000001_Node000004" class="edge">
<title>Node1&#45;&gt;Node4</title>
<g id="a_edge3_Node000001_Node000004"><a xlink:title=" ">
<path fill="none" stroke="#63b8ff" d="M303.29,-118.65C322.5,-123.69 343.25,-129.13 361.8,-134"/>
<polygon fill="#63b8ff" stroke="#63b8ff" points="303.96,-115.21 293.4,-116.06 302.19,-121.98 303.96,-115.21"/>
</a>
</g>
</g>
<!-- Node5 -->
<g id="Node000005" class="node">
<title>Node5</title>
<g id="a_Node000005"><a xlink:href="classgridfire_1_1engine_1_1DefinedEngineView.html" target="_top" xlink:title=" ">
<polygon fill="white" stroke="#666666" points="487,-116 353,-116 353,-86 487,-86 487,-116"/>
<text text-anchor="start" x="361" y="-104" font-family="Helvetica,sans-Serif" font-size="10.00">gridfire::engine::Defined</text>
<text text-anchor="middle" x="420" y="-93" font-family="Helvetica,sans-Serif" font-size="10.00">EngineView</text>
</a>
</g>
</g>
<!-- Node1&#45;&gt;Node5 -->
<g id="edge4_Node000001_Node000005" class="edge">
<title>Node1&#45;&gt;Node5</title>
<g id="a_edge4_Node000001_Node000005"><a xlink:title=" ">
<path fill="none" stroke="#63b8ff" d="M315.53,-101C327.94,-101 340.66,-101 352.74,-101"/>
<polygon fill="#63b8ff" stroke="#63b8ff" points="315.18,-97.5 305.18,-101 315.18,-104.5 315.18,-97.5"/>
</a>
</g>
</g>
<!-- Node8 -->
<g id="Node000008" class="node">
<title>Node8</title>
<g id="a_Node000008"><a xlink:href="classgridfire_1_1engine_1_1GraphEngine.html" target="_top" xlink:title="A reaction network engine that uses a graph&#45;based representation.">
<polygon fill="white" stroke="#666666" points="499,-67.5 341,-67.5 341,-48.5 499,-48.5 499,-67.5"/>
<text text-anchor="middle" x="420" y="-55.5" font-family="Helvetica,sans-Serif" font-size="10.00">gridfire::engine::GraphEngine</text>
</a>
</g>
</g>
<!-- Node1&#45;&gt;Node8 -->
<g id="edge7_Node000001_Node000008" class="edge">
<title>Node1&#45;&gt;Node8</title>
<g id="a_edge7_Node000001_Node000008"><a xlink:title=" ">
<path fill="none" stroke="#63b8ff" d="M309.92,-83.63C333.32,-78.13 358.32,-72.26 378.48,-67.52"/>
<polygon fill="#63b8ff" stroke="#63b8ff" points="308.94,-80.27 300,-85.96 310.54,-87.08 308.94,-80.27"/>
</a>
</g>
</g>
<!-- Node9 -->
<g id="Node000009" class="node">
<title>Node9</title>
<g id="a_Node000009"><a xlink:href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html" target="_top" xlink:title="An engine view that partitions the reaction network into multiple groups based on timescales.">
<polygon fill="white" stroke="#666666" points="493,-30 347,-30 347,0 493,0 493,-30"/>
<text text-anchor="start" x="355" y="-18" font-family="Helvetica,sans-Serif" font-size="10.00">gridfire::engine::Multiscale</text>
<text text-anchor="middle" x="420" y="-7" font-family="Helvetica,sans-Serif" font-size="10.00">PartitioningEngineView</text>
</a>
</g>
</g>
<!-- Node1&#45;&gt;Node9 -->
<g id="edge8_Node000001_Node000009" class="edge">
<title>Node1&#45;&gt;Node9</title>
<g id="a_edge8_Node000001_Node000009"><a xlink:title=" ">
<path fill="none" stroke="#63b8ff" d="M266.67,-80.29C287.08,-67.16 314.85,-50.55 341,-39 348.39,-35.74 356.35,-32.74 364.27,-30.05"/>
<polygon fill="#63b8ff" stroke="#63b8ff" points="264.59,-77.46 258.12,-85.85 268.41,-83.33 264.59,-77.46"/>
</a>
</g>
</g>
<!-- Node2 -->
<g id="Node000002" class="node">
<title>Node2</title>
<g id="a_Node000002"><a xlink:href="classgridfire_1_1engine_1_1Engine.html" target="_top" xlink:title="Abstract base class for a reaction network engine.">
<polygon fill="white" stroke="#666666" points="129,-110.5 0,-110.5 0,-91.5 129,-91.5 129,-110.5"/>
<text text-anchor="middle" x="64.5" y="-98.5" font-family="Helvetica,sans-Serif" font-size="10.00">gridfire::engine::Engine</text>
</a>
</g>
</g>
<!-- Node2&#45;&gt;Node1 -->
<g id="edge1_Node000001_Node000002" class="edge">
<title>Node2&#45;&gt;Node1</title>
<g id="a_edge1_Node000001_Node000002"><a xlink:title=" ">
<path fill="none" stroke="#63b8ff" d="M139.42,-101C147.88,-101 156.47,-101 164.86,-101"/>
<polygon fill="#63b8ff" stroke="#63b8ff" points="139.2,-97.5 129.2,-101 139.2,-104.5 139.2,-97.5"/>
</a>
</g>
</g>
<!-- Node6 -->
<g id="Node000006" class="node">
<title>Node6</title>
<g id="a_Node000006"><a xlink:href="classgridfire_1_1engine_1_1FileDefinedEngineView.html" target="_top" xlink:title=" ">
<polygon fill="white" stroke="#666666" points="686,-140 535,-140 535,-110 686,-110 686,-140"/>
<text text-anchor="start" x="543" y="-128" font-family="Helvetica,sans-Serif" font-size="10.00">gridfire::engine::FileDefined</text>
<text text-anchor="middle" x="610.5" y="-117" font-family="Helvetica,sans-Serif" font-size="10.00">EngineView</text>
</a>
</g>
</g>
<!-- Node5&#45;&gt;Node6 -->
<g id="edge5_Node000005_Node000006" class="edge">
<title>Node5&#45;&gt;Node6</title>
<g id="a_edge5_Node000005_Node000006"><a xlink:title=" ">
<path fill="none" stroke="#63b8ff" d="M497.43,-110.73C509.75,-112.3 522.49,-113.92 534.78,-115.49"/>
<polygon fill="#63b8ff" stroke="#63b8ff" points="497.55,-107.22 487.19,-109.43 496.67,-114.16 497.55,-107.22"/>
</a>
</g>
</g>
<!-- Node7 -->
<g id="Node000007" class="node">
<title>Node7</title>
<g id="a_Node000007"><a xlink:href="classgridfire_1_1engine_1_1NetworkPrimingEngineView.html" target="_top" xlink:title="Provides a view of a DynamicEngine filtered to reactions involving a specified priming species.">
<polygon fill="white" stroke="#666666" points="679,-92 542,-92 542,-62 679,-62 679,-92"/>
<text text-anchor="start" x="550" y="-80" font-family="Helvetica,sans-Serif" font-size="10.00">gridfire::engine::Network</text>
<text text-anchor="middle" x="610.5" y="-69" font-family="Helvetica,sans-Serif" font-size="10.00">PrimingEngineView</text>
</a>
</g>
</g>
<!-- Node5&#45;&gt;Node7 -->
<g id="edge6_Node000005_Node000007" class="edge">
<title>Node5&#45;&gt;Node7</title>
<g id="a_edge6_Node000005_Node000007"><a xlink:title=" ">
<path fill="none" stroke="#63b8ff" d="M497.29,-91.29C512.05,-89.41 527.42,-87.45 541.87,-85.61"/>
<polygon fill="#63b8ff" stroke="#63b8ff" points="496.67,-87.84 487.19,-92.57 497.55,-94.78 496.67,-87.84"/>
</a>
</g>
</g>
</g>
</svg>

<g id="navigator" transform="translate(0 0)" fill="#404254">
  <rect fill="#f2f5e9" fill-opacity="0.5" stroke="#606060" stroke-width=".5" x="0" y="0" width="60" height="60"/>
  <use id="zoomplus" xlink:href="#zoomPlus" x="17" y="9" onmousedown="handleZoom(evt,'in')"/>
  <use id="zoomminus" xlink:href="#zoomMin" x="42" y="9" onmousedown="handleZoom(evt,'out')"/>
  <use id="reset" xlink:href="#resetDef" x="30" y="36" onmousedown="handleReset()"/>
   <use id="arrowup" xlink:href="#arrowUp" x="0" y="0" onmousedown="handlePan(0,-1)"/>
  <use id="arrowright" xlink:href="#arrowRight" x="0" y="0" onmousedown="handlePan(1,0)"/>
  <use id="arrowdown" xlink:href="#arrowDown" x="0" y="0" onmousedown="handlePan(0,1)"/>
  <use id="arrowleft" xlink:href="#arrowLeft" x="0" y="0" onmousedown="handlePan(-1,0)"/>
</g>
<svg viewBox="0 0 15 15" width="100%" height="30px" preserveAspectRatio="xMaxYMin meet">
 <g id="arrow_out" transform="scale(0.3 0.3)">
  <a xlink:href="classgridfire_1_1engine_1_1DynamicEngine__inherit__graph_org.svg" target="_base">
   <rect id="button" ry="5" rx="5" y="6" x="6" height="38" width="38"
        fill="#f2f5e9" fill-opacity="0.5" stroke="#606060" stroke-width="1.0"/>
   <path id="arrow"
     d="M 11.500037,31.436501 C 11.940474,20.09759 22.043105,11.32322 32.158766,21.979434 L 37.068811,17.246167 C 37.068811,17.246167 37.088388,32 37.088388,32 L 22.160133,31.978069 C 22.160133,31.978069 26.997745,27.140456 26.997745,27.140456 C 18.528582,18.264221 13.291696,25.230495 11.500037,31.436501 z"
     style="fill:#404040;"/>
  </a>
 </g>
</svg>

<style type='text/css'>
<![CDATA[
[data-mouse-over-selected='false'] { opacity: 0.7; }
[data-mouse-over-selected='true']  { opacity: 1.0; }
]]>
</style>
<script type="application/ecmascript"><![CDATA[
document.addEventListener('DOMContentLoaded', (event) => {
  highlightEdges();
  highlightAdjacentNodes();
});
]]></script>
</svg>