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<a href="priming_8cpp.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a id="l00001" name="l00001"></a><span class="lineno"> 1</span><span class="preprocessor">#include "<a class="code" href="priming_8h.html">gridfire/engine/procedures/priming.h</a>"</span></div>
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<div class="line"><a id="l00002" name="l00002"></a><span class="lineno"> 2</span><span class="preprocessor">#include "<a class="code" href="engine__priming_8h.html">gridfire/engine/views/engine_priming.h</a>"</span></div>
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<div class="line"><a id="l00003" name="l00003"></a><span class="lineno"> 3</span><span class="preprocessor">#include "<a class="code" href="construction_8h.html">gridfire/engine/procedures/construction.h</a>"</span></div>
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<div class="line"><a id="l00004" name="l00004"></a><span class="lineno"> 4</span><span class="preprocessor">#include "<a class="code" href="solver_8h.html">gridfire/solver/solver.h</a>"</span></div>
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<div class="line"><a id="l00005" name="l00005"></a><span class="lineno"> 5</span> </div>
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<div class="line"><a id="l00006" name="l00006"></a><span class="lineno"> 6</span><span class="preprocessor">#include "<a class="code" href="engine__abstract_8h.html">gridfire/engine/engine_abstract.h</a>"</span></div>
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<div class="line"><a id="l00007" name="l00007"></a><span class="lineno"> 7</span><span class="preprocessor">#include "<a class="code" href="network_8h.html">gridfire/network.h</a>"</span></div>
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<div class="line"><a id="l00008" name="l00008"></a><span class="lineno"> 8</span> </div>
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<div class="line"><a id="l00009" name="l00009"></a><span class="lineno"> 9</span><span class="preprocessor">#include "fourdst/logging/logging.h"</span></div>
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<div class="line"><a id="l00010" name="l00010"></a><span class="lineno"> 10</span><span class="preprocessor">#include "quill/Logger.h"</span></div>
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<div class="line"><a id="l00011" name="l00011"></a><span class="lineno"> 11</span><span class="preprocessor">#include "quill/LogMacros.h"</span></div>
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<div class="line"><a id="l00012" name="l00012"></a><span class="lineno"> 12</span> </div>
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<div class="line"><a id="l00013" name="l00013"></a><span class="lineno"> 13</span><span class="keyword">namespace </span><a class="code hl_namespace" href="namespacegridfire.html">gridfire</a> {</div>
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<div class="line"><a id="l00014" name="l00014"></a><span class="lineno"> 14</span> <span class="keyword">using </span>fourdst::composition::Composition;</div>
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<div class="line"><a id="l00015" name="l00015"></a><span class="lineno"> 15</span> <span class="keyword">using </span>fourdst::atomic::Species;</div>
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<div class="line"><a id="l00016" name="l00016"></a><span class="lineno"> 16</span> </div>
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<div class="foldopen" id="foldopen00017" data-start="{" data-end="}">
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<div class="line"><a id="l00017" name="l00017"></a><span class="lineno"><a class="line" href="namespacegridfire.html#aefc63ddbfe97dcb4178c94dfd1c4b256"> 17</a></span> <span class="keyword">const</span> <a class="code hl_class" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a>* <a class="code hl_function" href="namespacegridfire.html#aefc63ddbfe97dcb4178c94dfd1c4b256">findDominantCreationChannel</a> (</div>
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<div class="line"><a id="l00018" name="l00018"></a><span class="lineno"> 18</span> <span class="keyword">const</span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a>& engine,</div>
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<div class="line"><a id="l00019" name="l00019"></a><span class="lineno"> 19</span> <span class="keyword">const</span> Species& species,</div>
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<div class="line"><a id="l00020" name="l00020"></a><span class="lineno"> 20</span> <span class="keyword">const</span> std::vector<double>& Y,</div>
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<div class="line"><a id="l00021" name="l00021"></a><span class="lineno"> 21</span> <span class="keyword">const</span> <span class="keywordtype">double</span> T9,</div>
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<div class="line"><a id="l00022" name="l00022"></a><span class="lineno"> 22</span> <span class="keyword">const</span> <span class="keywordtype">double</span> rho</div>
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<div class="line"><a id="l00023" name="l00023"></a><span class="lineno"> 23</span> ) {</div>
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<div class="line"><a id="l00024" name="l00024"></a><span class="lineno"> 24</span> <span class="keyword">const</span> <a class="code hl_class" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a>* dominateReaction = <span class="keyword">nullptr</span>;</div>
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<div class="line"><a id="l00025" name="l00025"></a><span class="lineno"> 25</span> <span class="keywordtype">double</span> maxFlow = -1.0;</div>
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<div class="line"><a id="l00026" name="l00026"></a><span class="lineno"> 26</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>& <a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a> : engine.<a class="code hl_function" href="classgridfire_1_1_dynamic_engine.html#ad2a82099edbb374bbb2c9509ccdb1037">getNetworkReactions</a>()) {</div>
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<div class="line"><a id="l00027" name="l00027"></a><span class="lineno"> 27</span> <span class="keywordflow">if</span> (<a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a>.contains(species) && <a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a>.stoichiometry(species) > 0) {</div>
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<div class="line"><a id="l00028" name="l00028"></a><span class="lineno"> 28</span> <span class="keyword">const</span> <span class="keywordtype">double</span> flow = engine.<a class="code hl_function" href="classgridfire_1_1_dynamic_engine.html#a6633b1757c41dd9e1c397333f4f9e785">calculateMolarReactionFlow</a>(<a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a>, Y, T9, rho);</div>
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<div class="line"><a id="l00029" name="l00029"></a><span class="lineno"> 29</span> <span class="keywordflow">if</span> (flow > maxFlow) {</div>
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<div class="line"><a id="l00030" name="l00030"></a><span class="lineno"> 30</span> maxFlow = flow;</div>
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<div class="line"><a id="l00031" name="l00031"></a><span class="lineno"> 31</span> dominateReaction = &<a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a>;</div>
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<div class="line"><a id="l00032" name="l00032"></a><span class="lineno"> 32</span> }</div>
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<div class="line"><a id="l00033" name="l00033"></a><span class="lineno"> 33</span> }</div>
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<div class="line"><a id="l00034" name="l00034"></a><span class="lineno"> 34</span> }</div>
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<div class="line"><a id="l00035" name="l00035"></a><span class="lineno"> 35</span> <span class="keywordflow">return</span> dominateReaction;</div>
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<div class="line"><a id="l00036" name="l00036"></a><span class="lineno"> 36</span> }</div>
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</div>
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<div class="line"><a id="l00037" name="l00037"></a><span class="lineno"> 37</span> </div>
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<div class="line"><a id="l00038" name="l00038"></a><span class="lineno"> 38</span> </div>
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<div class="foldopen" id="foldopen00039" data-start="{" data-end="}">
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<div class="line"><a id="l00039" name="l00039"></a><span class="lineno"><a class="line" href="namespacegridfire.html#acd0bfdfbce4e84af102d62ff8a797c9f"> 39</a></span> <a class="code hl_struct" href="structgridfire_1_1_priming_report.html">PrimingReport</a> <a class="code hl_function" href="namespacegridfire.html#acd0bfdfbce4e84af102d62ff8a797c9f">primeNetwork</a>(<span class="keyword">const</span> <a class="code hl_struct" href="structgridfire_1_1_net_in.html">NetIn</a>& netIn, <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a>& engine) {</div>
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<div class="line"><a id="l00040" name="l00040"></a><span class="lineno"> 40</span> <span class="keyword">auto</span> logger = LogManager::getInstance().getLogger(<span class="stringliteral">"log"</span>);</div>
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<div class="line"><a id="l00041" name="l00041"></a><span class="lineno"> 41</span> </div>
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<div class="line"><a id="l00042" name="l00042"></a><span class="lineno"> 42</span> std::vector<Species> speciesToPrime;</div>
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<div class="line"><a id="l00043" name="l00043"></a><span class="lineno"> 43</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span> &entry: netIn.<a class="code hl_variable" href="structgridfire_1_1_net_in.html#a13058f4929e72c1187abbebcddb8aed1">composition</a> | std::views::values) {</div>
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<div class="line"><a id="l00044" name="l00044"></a><span class="lineno"> 44</span> <span class="keywordflow">if</span> (entry.mass_fraction() == 0.0) {</div>
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<div class="line"><a id="l00045" name="l00045"></a><span class="lineno"> 45</span> speciesToPrime.push_back(entry.isotope());</div>
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<div class="line"><a id="l00046" name="l00046"></a><span class="lineno"> 46</span> }</div>
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<div class="line"><a id="l00047" name="l00047"></a><span class="lineno"> 47</span> }</div>
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<div class="line"><a id="l00048" name="l00048"></a><span class="lineno"> 48</span> LOG_DEBUG(logger, <span class="stringliteral">"Priming {} species in the network."</span>, speciesToPrime.size());</div>
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<div class="line"><a id="l00049" name="l00049"></a><span class="lineno"> 49</span> </div>
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<div class="line"><a id="l00050" name="l00050"></a><span class="lineno"> 50</span> <a class="code hl_struct" href="structgridfire_1_1_priming_report.html">PrimingReport</a> report;</div>
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<div class="line"><a id="l00051" name="l00051"></a><span class="lineno"> 51</span> <span class="keywordflow">if</span> (speciesToPrime.empty()) {</div>
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<div class="line"><a id="l00052" name="l00052"></a><span class="lineno"> 52</span> report.<a class="code hl_variable" href="structgridfire_1_1_priming_report.html#a15032fd3354bd8fb383e13929bbd0ceb">primedComposition</a> = netIn.<a class="code hl_variable" href="structgridfire_1_1_net_in.html#a13058f4929e72c1187abbebcddb8aed1">composition</a>;</div>
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<div class="line"><a id="l00053" name="l00053"></a><span class="lineno"> 53</span> report.<a class="code hl_variable" href="structgridfire_1_1_priming_report.html#afa4dd791ddd9df84039554524b681fb3">success</a> = <span class="keyword">true</span>;</div>
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<div class="line"><a id="l00054" name="l00054"></a><span class="lineno"> 54</span> report.<a class="code hl_variable" href="structgridfire_1_1_priming_report.html#a5fec4b465afb4f2d9bc30cd1cab1b50d">status</a> = <a class="code hl_enumvalue" href="namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a708c14ec56942aa5f32e7bef1e29db45">PrimingReportStatus::NO_SPECIES_TO_PRIME</a>;</div>
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<div class="line"><a id="l00055" name="l00055"></a><span class="lineno"> 55</span> <span class="keywordflow">return</span> report;</div>
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<div class="line"><a id="l00056" name="l00056"></a><span class="lineno"> 56</span> }</div>
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<div class="line"><a id="l00057" name="l00057"></a><span class="lineno"> 57</span> </div>
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<div class="line"><a id="l00058" name="l00058"></a><span class="lineno"> 58</span> <span class="keyword">const</span> <span class="keywordtype">double</span> T9 = netIn.<a class="code hl_variable" href="structgridfire_1_1_net_in.html#a5be0f5195a5cd1dd177b9fc5ab83a7be">temperature</a> / 1e9;</div>
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<div class="line"><a id="l00059" name="l00059"></a><span class="lineno"> 59</span> <span class="keyword">const</span> <span class="keywordtype">double</span> rho = netIn.<a class="code hl_variable" href="structgridfire_1_1_net_in.html#a06f0dff9f8927b7cf2da3004c8fa1577">density</a>;</div>
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<div class="line"><a id="l00060" name="l00060"></a><span class="lineno"> 60</span> <span class="keyword">const</span> <span class="keyword">auto</span> initialReactionSet = engine.<a class="code hl_function" href="classgridfire_1_1_dynamic_engine.html#ad2a82099edbb374bbb2c9509ccdb1037">getNetworkReactions</a>();</div>
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<div class="line"><a id="l00061" name="l00061"></a><span class="lineno"> 61</span> </div>
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<div class="line"><a id="l00062" name="l00062"></a><span class="lineno"> 62</span> report.<a class="code hl_variable" href="structgridfire_1_1_priming_report.html#a5fec4b465afb4f2d9bc30cd1cab1b50d">status</a> = <a class="code hl_enumvalue" href="namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a64d98633bac1de0eb2a539cbfd2a5c2a">PrimingReportStatus::FULL_SUCCESS</a>;</div>
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<div class="line"><a id="l00063" name="l00063"></a><span class="lineno"> 63</span> report.<a class="code hl_variable" href="structgridfire_1_1_priming_report.html#afa4dd791ddd9df84039554524b681fb3">success</a> = <span class="keyword">true</span>;</div>
|
||
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|
<div class="line"><a id="l00064" name="l00064"></a><span class="lineno"> 64</span> </div>
|
||
|
|
<div class="line"><a id="l00065" name="l00065"></a><span class="lineno"> 65</span> <span class="comment">// --- 1: pack composition into internal map ---</span></div>
|
||
|
|
<div class="line"><a id="l00066" name="l00066"></a><span class="lineno"> 66</span> std::unordered_map<Species, double> currentMassFractions;</div>
|
||
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|
<div class="line"><a id="l00067" name="l00067"></a><span class="lineno"> 67</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>& entry : netIn.<a class="code hl_variable" href="structgridfire_1_1_net_in.html#a13058f4929e72c1187abbebcddb8aed1">composition</a> | std::views::values) {</div>
|
||
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|
<div class="line"><a id="l00068" name="l00068"></a><span class="lineno"> 68</span> currentMassFractions[entry.isotope()] = entry.mass_fraction();</div>
|
||
|
|
<div class="line"><a id="l00069" name="l00069"></a><span class="lineno"> 69</span> }</div>
|
||
|
|
<div class="line"><a id="l00070" name="l00070"></a><span class="lineno"> 70</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>& entry : speciesToPrime) {</div>
|
||
|
|
<div class="line"><a id="l00071" name="l00071"></a><span class="lineno"> 71</span> currentMassFractions[entry] = 0.0; <span class="comment">// Initialize priming species with 0 mass fraction</span></div>
|
||
|
|
<div class="line"><a id="l00072" name="l00072"></a><span class="lineno"> 72</span> }</div>
|
||
|
|
<div class="line"><a id="l00073" name="l00073"></a><span class="lineno"> 73</span> </div>
|
||
|
|
<div class="line"><a id="l00074" name="l00074"></a><span class="lineno"> 74</span> std::unordered_map<Species, double> totalMassFractionChanges;</div>
|
||
|
|
<div class="line"><a id="l00075" name="l00075"></a><span class="lineno"> 75</span> </div>
|
||
|
|
<div class="line"><a id="l00076" name="l00076"></a><span class="lineno"> 76</span> engine.<a class="code hl_function" href="classgridfire_1_1_dynamic_engine.html#a4e2c8b896661b7a89beffe0066cb21cf">rebuild</a>(netIn.<a class="code hl_variable" href="structgridfire_1_1_net_in.html#a13058f4929e72c1187abbebcddb8aed1">composition</a>, <a class="code hl_enumvalue" href="namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57abbd47109890259c0127154db1af26c75">NetworkBuildDepth::Full</a>);</div>
|
||
|
|
<div class="line"><a id="l00077" name="l00077"></a><span class="lineno"> 77</span> </div>
|
||
|
|
<div class="line"><a id="l00078" name="l00078"></a><span class="lineno"> 78</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>& primingSpecies : speciesToPrime) {</div>
|
||
|
|
<div class="line"><a id="l00079" name="l00079"></a><span class="lineno"> 79</span> LOG_TRACE_L3(logger, <span class="stringliteral">"Priming species: {}"</span>, primingSpecies.name());</div>
|
||
|
|
<div class="line"><a id="l00080" name="l00080"></a><span class="lineno"> 80</span> </div>
|
||
|
|
<div class="line"><a id="l00081" name="l00081"></a><span class="lineno"> 81</span> <span class="comment">// Create a temporary composition from the current internal state for the primer</span></div>
|
||
|
|
<div class="line"><a id="l00082" name="l00082"></a><span class="lineno"> 82</span> Composition tempComp;</div>
|
||
|
|
<div class="line"><a id="l00083" name="l00083"></a><span class="lineno"> 83</span> <span class="keywordflow">for</span>(<span class="keyword">const</span> <span class="keyword">auto</span>& [sp, mf] : currentMassFractions) {</div>
|
||
|
|
<div class="line"><a id="l00084" name="l00084"></a><span class="lineno"> 84</span> tempComp.registerSymbol(std::string(sp.name()));</div>
|
||
|
|
<div class="line"><a id="l00085" name="l00085"></a><span class="lineno"> 85</span> <span class="keywordflow">if</span> (mf < 0.0 && std::abs(mf) < 1e-16) {</div>
|
||
|
|
<div class="line"><a id="l00086" name="l00086"></a><span class="lineno"> 86</span> tempComp.setMassFraction(sp, 0.0); <span class="comment">// Avoid negative mass fractions</span></div>
|
||
|
|
<div class="line"><a id="l00087" name="l00087"></a><span class="lineno"> 87</span> } <span class="keywordflow">else</span> {</div>
|
||
|
|
<div class="line"><a id="l00088" name="l00088"></a><span class="lineno"> 88</span> tempComp.setMassFraction(sp, mf);</div>
|
||
|
|
<div class="line"><a id="l00089" name="l00089"></a><span class="lineno"> 89</span> }</div>
|
||
|
|
<div class="line"><a id="l00090" name="l00090"></a><span class="lineno"> 90</span> }</div>
|
||
|
|
<div class="line"><a id="l00091" name="l00091"></a><span class="lineno"> 91</span> tempComp.finalize(<span class="keyword">true</span>); <span class="comment">// Finalize with normalization</span></div>
|
||
|
|
<div class="line"><a id="l00092" name="l00092"></a><span class="lineno"> 92</span> </div>
|
||
|
|
<div class="line"><a id="l00093" name="l00093"></a><span class="lineno"> 93</span> <a class="code hl_struct" href="structgridfire_1_1_net_in.html">NetIn</a> tempNetIn = netIn;</div>
|
||
|
|
<div class="line"><a id="l00094" name="l00094"></a><span class="lineno"> 94</span> tempNetIn.<a class="code hl_variable" href="structgridfire_1_1_net_in.html#a13058f4929e72c1187abbebcddb8aed1">composition</a> = tempComp;</div>
|
||
|
|
<div class="line"><a id="l00095" name="l00095"></a><span class="lineno"> 95</span> </div>
|
||
|
|
<div class="line"><a id="l00096" name="l00096"></a><span class="lineno"> 96</span> <a class="code hl_class" href="classgridfire_1_1_network_priming_engine_view.html">NetworkPrimingEngineView</a> primer(primingSpecies, engine);</div>
|
||
|
|
<div class="line"><a id="l00097" name="l00097"></a><span class="lineno"> 97</span> </div>
|
||
|
|
<div class="line"><a id="l00098" name="l00098"></a><span class="lineno"> 98</span> <span class="keywordflow">if</span> (primer.<a class="code hl_function" href="classgridfire_1_1_defined_engine_view.html#ae03b4f9afac03d4011a4d7cf0423535d">getNetworkReactions</a>().<a class="code hl_function" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a6a1dc3c56690386ae9f6aa5c2aa37ba2">size</a>() == 0) {</div>
|
||
|
|
<div class="line"><a id="l00099" name="l00099"></a><span class="lineno"> 99</span> LOG_ERROR(logger, <span class="stringliteral">"No priming reactions found for species {}."</span>, primingSpecies.name());</div>
|
||
|
|
<div class="line"><a id="l00100" name="l00100"></a><span class="lineno"> 100</span> report.<a class="code hl_variable" href="structgridfire_1_1_priming_report.html#afa4dd791ddd9df84039554524b681fb3">success</a> = <span class="keyword">false</span>;</div>
|
||
|
|
<div class="line"><a id="l00101" name="l00101"></a><span class="lineno"> 101</span> report.<a class="code hl_variable" href="structgridfire_1_1_priming_report.html#a5fec4b465afb4f2d9bc30cd1cab1b50d">status</a> = <a class="code hl_enumvalue" href="namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a186367e42446c004076290ca7913d931">PrimingReportStatus::FAILED_TO_FIND_PRIMING_REACTIONS</a>;</div>
|
||
|
|
<div class="line"><a id="l00102" name="l00102"></a><span class="lineno"> 102</span> <span class="keywordflow">continue</span>;</div>
|
||
|
|
<div class="line"><a id="l00103" name="l00103"></a><span class="lineno"> 103</span> }</div>
|
||
|
|
<div class="line"><a id="l00104" name="l00104"></a><span class="lineno"> 104</span> </div>
|
||
|
|
<div class="line"><a id="l00105" name="l00105"></a><span class="lineno"> 105</span> <span class="keyword">const</span> <span class="keyword">auto</span> Y = primer.<a class="code hl_function" href="classgridfire_1_1_defined_engine_view.html#a72789c1c3379594b65b560da50192de2">mapNetInToMolarAbundanceVector</a>(tempNetIn);</div>
|
||
|
|
<div class="line"><a id="l00106" name="l00106"></a><span class="lineno"> 106</span> <span class="keyword">const</span> <span class="keywordtype">double</span> destructionRateConstant = <a class="code hl_function" href="namespacegridfire.html#a8f26d5f5fabb42e88261e42bc060cea2">calculateDestructionRateConstant</a>(primer, primingSpecies, Y, T9, rho);</div>
|
||
|
|
<div class="line"><a id="l00107" name="l00107"></a><span class="lineno"> 107</span> </div>
|
||
|
|
<div class="line"><a id="l00108" name="l00108"></a><span class="lineno"> 108</span> <span class="keywordtype">double</span> equilibriumMassFraction = 0.0;</div>
|
||
|
|
<div class="line"><a id="l00109" name="l00109"></a><span class="lineno"> 109</span> </div>
|
||
|
|
<div class="line"><a id="l00110" name="l00110"></a><span class="lineno"> 110</span> <span class="keywordflow">if</span> (destructionRateConstant > 1e-99) {</div>
|
||
|
|
<div class="line"><a id="l00111" name="l00111"></a><span class="lineno"> 111</span> <span class="keyword">const</span> <span class="keywordtype">double</span> creationRate = <a class="code hl_function" href="namespacegridfire.html#a7c4b6104d5dfc5afddda36f726c5d07d">calculateCreationRate</a>(primer, primingSpecies, Y, T9, rho);</div>
|
||
|
|
<div class="line"><a id="l00112" name="l00112"></a><span class="lineno"> 112</span> equilibriumMassFraction = (creationRate / destructionRateConstant) * primingSpecies.mass();</div>
|
||
|
|
<div class="line"><a id="l00113" name="l00113"></a><span class="lineno"> 113</span> <span class="keywordflow">if</span> (std::isnan(equilibriumMassFraction)) {</div>
|
||
|
|
<div class="line"><a id="l00114" name="l00114"></a><span class="lineno"> 114</span> LOG_WARNING(logger, <span class="stringliteral">"Equilibrium mass fraction for {} is NaN. Setting to 0.0. This is likely not an issue. It probably originates from all reactions leading to creation and destruction being frozen out. In that case 0.0 should be a good approximation. Hint: This happens often when the network temperature is very the low. "</span>, primingSpecies.name());</div>
|
||
|
|
<div class="line"><a id="l00115" name="l00115"></a><span class="lineno"> 115</span> equilibriumMassFraction = 0.0;</div>
|
||
|
|
<div class="line"><a id="l00116" name="l00116"></a><span class="lineno"> 116</span> }</div>
|
||
|
|
<div class="line"><a id="l00117" name="l00117"></a><span class="lineno"> 117</span> LOG_TRACE_L3(logger, <span class="stringliteral">"Found equilibrium for {}: X_eq = {:.4e}"</span>, primingSpecies.name(), equilibriumMassFraction);</div>
|
||
|
|
<div class="line"><a id="l00118" name="l00118"></a><span class="lineno"> 118</span> </div>
|
||
|
|
<div class="line"><a id="l00119" name="l00119"></a><span class="lineno"> 119</span> <span class="keyword">const</span> <a class="code hl_class" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a>* dominantChannel = <a class="code hl_function" href="namespacegridfire.html#aefc63ddbfe97dcb4178c94dfd1c4b256">findDominantCreationChannel</a>(primer, primingSpecies, Y, T9, rho);</div>
|
||
|
|
<div class="line"><a id="l00120" name="l00120"></a><span class="lineno"> 120</span> </div>
|
||
|
|
<div class="line"><a id="l00121" name="l00121"></a><span class="lineno"> 121</span> <span class="keywordflow">if</span> (dominantChannel) {</div>
|
||
|
|
<div class="line"><a id="l00122" name="l00122"></a><span class="lineno"> 122</span> LOG_TRACE_L3(logger, <span class="stringliteral">"Dominant creation channel for {}: {}"</span>, primingSpecies.name(), dominantChannel-><a class="code hl_function" href="classgridfire_1_1reaction_1_1_reaction.html#a78f42664cc957e266b6cf15fda09be97">peName</a>());</div>
|
||
|
|
<div class="line"><a id="l00123" name="l00123"></a><span class="lineno"> 123</span> </div>
|
||
|
|
<div class="line"><a id="l00124" name="l00124"></a><span class="lineno"> 124</span> <span class="keywordtype">double</span> totalReactantMass = 0.0;</div>
|
||
|
|
<div class="line"><a id="l00125" name="l00125"></a><span class="lineno"> 125</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>& reactant : dominantChannel-><a class="code hl_function" href="classgridfire_1_1reaction_1_1_reaction.html#a0b543e9b0bb4a21efe4b29780d9bdf5b">reactants</a>()) {</div>
|
||
|
|
<div class="line"><a id="l00126" name="l00126"></a><span class="lineno"> 126</span> totalReactantMass += reactant.mass();</div>
|
||
|
|
<div class="line"><a id="l00127" name="l00127"></a><span class="lineno"> 127</span> }</div>
|
||
|
|
<div class="line"><a id="l00128" name="l00128"></a><span class="lineno"> 128</span> </div>
|
||
|
|
<div class="line"><a id="l00129" name="l00129"></a><span class="lineno"> 129</span> <span class="keywordtype">double</span> scalingFactor = 1.0;</div>
|
||
|
|
<div class="line"><a id="l00130" name="l00130"></a><span class="lineno"> 130</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>& reactant : dominantChannel-><a class="code hl_function" href="classgridfire_1_1reaction_1_1_reaction.html#a0b543e9b0bb4a21efe4b29780d9bdf5b">reactants</a>()) {</div>
|
||
|
|
<div class="line"><a id="l00131" name="l00131"></a><span class="lineno"> 131</span> <span class="keyword">const</span> <span class="keywordtype">double</span> massToSubtract = equilibriumMassFraction * (reactant.mass() / totalReactantMass);</div>
|
||
|
|
<div class="line"><a id="l00132" name="l00132"></a><span class="lineno"> 132</span> <span class="keywordtype">double</span> availableMass = 0.0;</div>
|
||
|
|
<div class="line"><a id="l00133" name="l00133"></a><span class="lineno"> 133</span> <span class="keywordflow">if</span> (currentMassFractions.contains(reactant)) {</div>
|
||
|
|
<div class="line"><a id="l00134" name="l00134"></a><span class="lineno"> 134</span> availableMass = currentMassFractions.at(reactant);</div>
|
||
|
|
<div class="line"><a id="l00135" name="l00135"></a><span class="lineno"> 135</span> }</div>
|
||
|
|
<div class="line"><a id="l00136" name="l00136"></a><span class="lineno"> 136</span> <span class="keywordflow">if</span> (massToSubtract > availableMass && availableMass > 0) {</div>
|
||
|
|
<div class="line"><a id="l00137" name="l00137"></a><span class="lineno"> 137</span> scalingFactor = std::min(scalingFactor, availableMass / massToSubtract);</div>
|
||
|
|
<div class="line"><a id="l00138" name="l00138"></a><span class="lineno"> 138</span> }</div>
|
||
|
|
<div class="line"><a id="l00139" name="l00139"></a><span class="lineno"> 139</span> }</div>
|
||
|
|
<div class="line"><a id="l00140" name="l00140"></a><span class="lineno"> 140</span> </div>
|
||
|
|
<div class="line"><a id="l00141" name="l00141"></a><span class="lineno"> 141</span> <span class="keywordflow">if</span> (scalingFactor < 1.0) {</div>
|
||
|
|
<div class="line"><a id="l00142" name="l00142"></a><span class="lineno"> 142</span> LOG_WARNING(logger, <span class="stringliteral">"Priming for {} was limited by reactant availability. Scaling transfer by {:.4e}"</span>, primingSpecies.name(), scalingFactor);</div>
|
||
|
|
<div class="line"><a id="l00143" name="l00143"></a><span class="lineno"> 143</span> equilibriumMassFraction *= scalingFactor;</div>
|
||
|
|
<div class="line"><a id="l00144" name="l00144"></a><span class="lineno"> 144</span> }</div>
|
||
|
|
<div class="line"><a id="l00145" name="l00145"></a><span class="lineno"> 145</span> </div>
|
||
|
|
<div class="line"><a id="l00146" name="l00146"></a><span class="lineno"> 146</span> <span class="comment">// Update the internal mass fraction map and accumulate total changes</span></div>
|
||
|
|
<div class="line"><a id="l00147" name="l00147"></a><span class="lineno"> 147</span> totalMassFractionChanges[primingSpecies] += equilibriumMassFraction;</div>
|
||
|
|
<div class="line"><a id="l00148" name="l00148"></a><span class="lineno"> 148</span> currentMassFractions[primingSpecies] += equilibriumMassFraction;</div>
|
||
|
|
<div class="line"><a id="l00149" name="l00149"></a><span class="lineno"> 149</span> </div>
|
||
|
|
<div class="line"><a id="l00150" name="l00150"></a><span class="lineno"> 150</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>& reactant : dominantChannel-><a class="code hl_function" href="classgridfire_1_1reaction_1_1_reaction.html#a0b543e9b0bb4a21efe4b29780d9bdf5b">reactants</a>()) {</div>
|
||
|
|
<div class="line"><a id="l00151" name="l00151"></a><span class="lineno"> 151</span> <span class="keyword">const</span> <span class="keywordtype">double</span> massToSubtract = equilibriumMassFraction * (reactant.mass() / totalReactantMass);</div>
|
||
|
|
<div class="line"><a id="l00152" name="l00152"></a><span class="lineno"> 152</span> totalMassFractionChanges[reactant] -= massToSubtract;</div>
|
||
|
|
<div class="line"><a id="l00153" name="l00153"></a><span class="lineno"> 153</span> currentMassFractions[reactant] -= massToSubtract;</div>
|
||
|
|
<div class="line"><a id="l00154" name="l00154"></a><span class="lineno"> 154</span> }</div>
|
||
|
|
<div class="line"><a id="l00155" name="l00155"></a><span class="lineno"> 155</span> } <span class="keywordflow">else</span> {</div>
|
||
|
|
<div class="line"><a id="l00156" name="l00156"></a><span class="lineno"> 156</span> LOG_ERROR(logger, <span class="stringliteral">"Failed to find dominant creation channel for {}."</span>, primingSpecies.name());</div>
|
||
|
|
<div class="line"><a id="l00157" name="l00157"></a><span class="lineno"> 157</span> report.<a class="code hl_variable" href="structgridfire_1_1_priming_report.html#a5fec4b465afb4f2d9bc30cd1cab1b50d">status</a> = <a class="code hl_enumvalue" href="namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a9870268bdece09274aea75557a19158a">PrimingReportStatus::FAILED_TO_FIND_CREATION_CHANNEL</a>;</div>
|
||
|
|
<div class="line"><a id="l00158" name="l00158"></a><span class="lineno"> 158</span> totalMassFractionChanges[primingSpecies] += 1e-40;</div>
|
||
|
|
<div class="line"><a id="l00159" name="l00159"></a><span class="lineno"> 159</span> currentMassFractions[primingSpecies] += 1e-40;</div>
|
||
|
|
<div class="line"><a id="l00160" name="l00160"></a><span class="lineno"> 160</span> }</div>
|
||
|
|
<div class="line"><a id="l00161" name="l00161"></a><span class="lineno"> 161</span> } <span class="keywordflow">else</span> {</div>
|
||
|
|
<div class="line"><a id="l00162" name="l00162"></a><span class="lineno"> 162</span> LOG_WARNING(logger, <span class="stringliteral">"No destruction channel found for {}. Using fallback abundance."</span>, primingSpecies.name());</div>
|
||
|
|
<div class="line"><a id="l00163" name="l00163"></a><span class="lineno"> 163</span> totalMassFractionChanges[primingSpecies] += 1e-40;</div>
|
||
|
|
<div class="line"><a id="l00164" name="l00164"></a><span class="lineno"> 164</span> currentMassFractions[primingSpecies] += 1e-40;</div>
|
||
|
|
<div class="line"><a id="l00165" name="l00165"></a><span class="lineno"> 165</span> report.<a class="code hl_variable" href="structgridfire_1_1_priming_report.html#a5fec4b465afb4f2d9bc30cd1cab1b50d">status</a> = <a class="code hl_enumvalue" href="namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154ab837953f2841baabbae6bb5f2e43e71e">PrimingReportStatus::BASE_NETWORK_TOO_SHALLOW</a>;</div>
|
||
|
|
<div class="line"><a id="l00166" name="l00166"></a><span class="lineno"> 166</span> }</div>
|
||
|
|
<div class="line"><a id="l00167" name="l00167"></a><span class="lineno"> 167</span> }</div>
|
||
|
|
<div class="line"><a id="l00168" name="l00168"></a><span class="lineno"> 168</span> </div>
|
||
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<div class="line"><a id="l00169" name="l00169"></a><span class="lineno"> 169</span> <span class="comment">// --- Final Composition Construction ---</span></div>
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<div class="line"><a id="l00170" name="l00170"></a><span class="lineno"> 170</span> std::vector<std::string> final_symbols;</div>
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<div class="line"><a id="l00171" name="l00171"></a><span class="lineno"> 171</span> std::vector<double> final_mass_fractions;</div>
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<div class="line"><a id="l00172" name="l00172"></a><span class="lineno"> 172</span> <span class="keywordflow">for</span>(<span class="keyword">const</span> <span class="keyword">auto</span>& [species, mass_fraction] : currentMassFractions) {</div>
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<div class="line"><a id="l00173" name="l00173"></a><span class="lineno"> 173</span> final_symbols.push_back(std::string(species.name()));</div>
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<div class="line"><a id="l00174" name="l00174"></a><span class="lineno"> 174</span> <span class="keywordflow">if</span> (mass_fraction < 0.0 && std::abs(mass_fraction) < 1e-16) {</div>
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<div class="line"><a id="l00175" name="l00175"></a><span class="lineno"> 175</span> final_mass_fractions.push_back(0.0); <span class="comment">// Avoid negative mass fractions</span></div>
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<div class="line"><a id="l00176" name="l00176"></a><span class="lineno"> 176</span> } <span class="keywordflow">else</span> {</div>
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<div class="line"><a id="l00177" name="l00177"></a><span class="lineno"> 177</span> final_mass_fractions.push_back(mass_fraction);</div>
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<div class="line"><a id="l00178" name="l00178"></a><span class="lineno"> 178</span> }</div>
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<div class="line"><a id="l00179" name="l00179"></a><span class="lineno"> 179</span> }</div>
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<div class="line"><a id="l00180" name="l00180"></a><span class="lineno"> 180</span> </div>
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<div class="line"><a id="l00181" name="l00181"></a><span class="lineno"> 181</span> <span class="comment">// Create the final composition object from the pre-normalized mass fractions</span></div>
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<div class="line"><a id="l00182" name="l00182"></a><span class="lineno"> 182</span> Composition primedComposition(final_symbols, final_mass_fractions, <span class="keyword">true</span>);</div>
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<div class="line"><a id="l00183" name="l00183"></a><span class="lineno"> 183</span> </div>
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<div class="line"><a id="l00184" name="l00184"></a><span class="lineno"> 184</span> report.<a class="code hl_variable" href="structgridfire_1_1_priming_report.html#a15032fd3354bd8fb383e13929bbd0ceb">primedComposition</a> = primedComposition;</div>
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<div class="line"><a id="l00185" name="l00185"></a><span class="lineno"> 185</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>& [species, change] : totalMassFractionChanges) {</div>
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<div class="line"><a id="l00186" name="l00186"></a><span class="lineno"> 186</span> report.<a class="code hl_variable" href="structgridfire_1_1_priming_report.html#a37aa83b55f3da0bc3ff6bcb7b79878a7">massFractionChanges</a>.emplace_back(species, change);</div>
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<div class="line"><a id="l00187" name="l00187"></a><span class="lineno"> 187</span> }</div>
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<div class="line"><a id="l00188" name="l00188"></a><span class="lineno"> 188</span> </div>
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<div class="line"><a id="l00189" name="l00189"></a><span class="lineno"> 189</span> engine.<a class="code hl_function" href="classgridfire_1_1_dynamic_engine.html#afb2ec904d88fc8aab516db4059d0e00f">setNetworkReactions</a>(initialReactionSet);</div>
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<div class="line"><a id="l00190" name="l00190"></a><span class="lineno"> 190</span> <span class="keywordflow">return</span> report;</div>
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<div class="line"><a id="l00191" name="l00191"></a><span class="lineno"> 191</span> }</div>
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</div>
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||
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<div class="line"><a id="l00192" name="l00192"></a><span class="lineno"> 192</span> </div>
|
||
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<div class="foldopen" id="foldopen00193" data-start="{" data-end="}">
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||
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<div class="line"><a id="l00193" name="l00193"></a><span class="lineno"><a class="line" href="namespacegridfire.html#a8f26d5f5fabb42e88261e42bc060cea2"> 193</a></span> <span class="keywordtype">double</span> <a class="code hl_function" href="namespacegridfire.html#a8f26d5f5fabb42e88261e42bc060cea2">calculateDestructionRateConstant</a>(</div>
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<div class="line"><a id="l00194" name="l00194"></a><span class="lineno"> 194</span> <span class="keyword">const</span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a>& engine,</div>
|
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<div class="line"><a id="l00195" name="l00195"></a><span class="lineno"> 195</span> <span class="keyword">const</span> fourdst::atomic::Species& species,</div>
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<div class="line"><a id="l00196" name="l00196"></a><span class="lineno"> 196</span> <span class="keyword">const</span> std::vector<double>& Y,</div>
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<div class="line"><a id="l00197" name="l00197"></a><span class="lineno"> 197</span> <span class="keyword">const</span> <span class="keywordtype">double</span> T9,</div>
|
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<div class="line"><a id="l00198" name="l00198"></a><span class="lineno"> 198</span> <span class="keyword">const</span> <span class="keywordtype">double</span> rho</div>
|
||
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<div class="line"><a id="l00199" name="l00199"></a><span class="lineno"> 199</span> ) {</div>
|
||
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<div class="line"><a id="l00200" name="l00200"></a><span class="lineno"> 200</span> <span class="keyword">const</span> <span class="keywordtype">int</span> speciesIndex = engine.<a class="code hl_function" href="classgridfire_1_1_dynamic_engine.html#ad3d56a8b9161b9cc7f4da51f6bf7e8c9">getSpeciesIndex</a>(species);</div>
|
||
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<div class="line"><a id="l00201" name="l00201"></a><span class="lineno"> 201</span> std::vector<double> Y_scaled(Y.begin(), Y.end());</div>
|
||
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<div class="line"><a id="l00202" name="l00202"></a><span class="lineno"> 202</span> Y_scaled[speciesIndex] = 1.0; <span class="comment">// Set the abundance of the species to 1.0 for rate constant calculation</span></div>
|
||
|
|
<div class="line"><a id="l00203" name="l00203"></a><span class="lineno"> 203</span> <span class="keywordtype">double</span> destructionRateConstant = 0.0;</div>
|
||
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<div class="line"><a id="l00204" name="l00204"></a><span class="lineno"> 204</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>& <a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a>: engine.<a class="code hl_function" href="classgridfire_1_1_dynamic_engine.html#ad2a82099edbb374bbb2c9509ccdb1037">getNetworkReactions</a>()) {</div>
|
||
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|
<div class="line"><a id="l00205" name="l00205"></a><span class="lineno"> 205</span> <span class="keywordflow">if</span> (<a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a>.contains_reactant(species)) {</div>
|
||
|
|
<div class="line"><a id="l00206" name="l00206"></a><span class="lineno"> 206</span> <span class="keyword">const</span> <span class="keywordtype">int</span> stoichiometry = <a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a>.stoichiometry(species);</div>
|
||
|
|
<div class="line"><a id="l00207" name="l00207"></a><span class="lineno"> 207</span> destructionRateConstant += std::abs(stoichiometry) * engine.<a class="code hl_function" href="classgridfire_1_1_dynamic_engine.html#a6633b1757c41dd9e1c397333f4f9e785">calculateMolarReactionFlow</a>(<a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a>, Y_scaled, T9, rho);</div>
|
||
|
|
<div class="line"><a id="l00208" name="l00208"></a><span class="lineno"> 208</span> }</div>
|
||
|
|
<div class="line"><a id="l00209" name="l00209"></a><span class="lineno"> 209</span> }</div>
|
||
|
|
<div class="line"><a id="l00210" name="l00210"></a><span class="lineno"> 210</span> <span class="keywordflow">return</span> destructionRateConstant;</div>
|
||
|
|
<div class="line"><a id="l00211" name="l00211"></a><span class="lineno"> 211</span> }</div>
|
||
|
|
</div>
|
||
|
|
<div class="line"><a id="l00212" name="l00212"></a><span class="lineno"> 212</span> </div>
|
||
|
|
<div class="foldopen" id="foldopen00213" data-start="{" data-end="}">
|
||
|
|
<div class="line"><a id="l00213" name="l00213"></a><span class="lineno"><a class="line" href="namespacegridfire.html#a7c4b6104d5dfc5afddda36f726c5d07d"> 213</a></span> <span class="keywordtype">double</span> <a class="code hl_function" href="namespacegridfire.html#a7c4b6104d5dfc5afddda36f726c5d07d">calculateCreationRate</a>(</div>
|
||
|
|
<div class="line"><a id="l00214" name="l00214"></a><span class="lineno"> 214</span> <span class="keyword">const</span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a>& engine,</div>
|
||
|
|
<div class="line"><a id="l00215" name="l00215"></a><span class="lineno"> 215</span> <span class="keyword">const</span> fourdst::atomic::Species& species,</div>
|
||
|
|
<div class="line"><a id="l00216" name="l00216"></a><span class="lineno"> 216</span> <span class="keyword">const</span> std::vector<double>& Y,</div>
|
||
|
|
<div class="line"><a id="l00217" name="l00217"></a><span class="lineno"> 217</span> <span class="keyword">const</span> <span class="keywordtype">double</span> T9,</div>
|
||
|
|
<div class="line"><a id="l00218" name="l00218"></a><span class="lineno"> 218</span> <span class="keyword">const</span> <span class="keywordtype">double</span> rho</div>
|
||
|
|
<div class="line"><a id="l00219" name="l00219"></a><span class="lineno"> 219</span> ) {</div>
|
||
|
|
<div class="line"><a id="l00220" name="l00220"></a><span class="lineno"> 220</span> <span class="keywordtype">double</span> creationRate = 0.0;</div>
|
||
|
|
<div class="line"><a id="l00221" name="l00221"></a><span class="lineno"> 221</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>& <a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a>: engine.<a class="code hl_function" href="classgridfire_1_1_dynamic_engine.html#ad2a82099edbb374bbb2c9509ccdb1037">getNetworkReactions</a>()) {</div>
|
||
|
|
<div class="line"><a id="l00222" name="l00222"></a><span class="lineno"> 222</span> <span class="keyword">const</span> <span class="keywordtype">int</span> stoichiometry = <a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a>.stoichiometry(species);</div>
|
||
|
|
<div class="line"><a id="l00223" name="l00223"></a><span class="lineno"> 223</span> <span class="keywordflow">if</span> (stoichiometry > 0) {</div>
|
||
|
|
<div class="line"><a id="l00224" name="l00224"></a><span class="lineno"> 224</span> creationRate += stoichiometry * engine.<a class="code hl_function" href="classgridfire_1_1_dynamic_engine.html#a6633b1757c41dd9e1c397333f4f9e785">calculateMolarReactionFlow</a>(<a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a>, Y, T9, rho);</div>
|
||
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|
<div class="line"><a id="l00225" name="l00225"></a><span class="lineno"> 225</span> }</div>
|
||
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|
<div class="line"><a id="l00226" name="l00226"></a><span class="lineno"> 226</span> }</div>
|
||
|
|
<div class="line"><a id="l00227" name="l00227"></a><span class="lineno"> 227</span> <span class="keywordflow">return</span> creationRate;</div>
|
||
|
|
<div class="line"><a id="l00228" name="l00228"></a><span class="lineno"> 228</span> }</div>
|
||
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|
</div>
|
||
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<div class="line"><a id="l00229" name="l00229"></a><span class="lineno"> 229</span>}</div>
|
||
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<div class="ttc" id="aclassgridfire_1_1_defined_engine_view_html_a72789c1c3379594b65b560da50192de2"><div class="ttname"><a href="classgridfire_1_1_defined_engine_view.html#a72789c1c3379594b65b560da50192de2">gridfire::DefinedEngineView::mapNetInToMolarAbundanceVector</a></div><div class="ttdeci">std::vector< double > mapNetInToMolarAbundanceVector(const NetIn &netIn) const override</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8cpp_source.html#l00201">engine_defined.cpp:201</a></div></div>
|
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<div class="ttc" id="aclassgridfire_1_1_defined_engine_view_html_ae03b4f9afac03d4011a4d7cf0423535d"><div class="ttname"><a href="classgridfire_1_1_defined_engine_view.html#ae03b4f9afac03d4011a4d7cf0423535d">gridfire::DefinedEngineView::getNetworkReactions</a></div><div class="ttdeci">const reaction::LogicalReactionSet & getNetworkReactions() const override</div><div class="ttdoc">Gets the set of active logical reactions in the network.</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8cpp_source.html#l00108">engine_defined.cpp:108</a></div></div>
|
||
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<div class="ttc" id="aclassgridfire_1_1_dynamic_engine_html"><div class="ttname"><a href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></div><div class="ttdoc">Abstract class for engines supporting Jacobian and stoichiometry operations.</div><div class="ttdef"><b>Definition</b> <a href="engine__abstract_8h_source.html#l00130">engine_abstract.h:130</a></div></div>
|
||
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<div class="ttc" id="aclassgridfire_1_1_dynamic_engine_html_a4e2c8b896661b7a89beffe0066cb21cf"><div class="ttname"><a href="classgridfire_1_1_dynamic_engine.html#a4e2c8b896661b7a89beffe0066cb21cf">gridfire::DynamicEngine::rebuild</a></div><div class="ttdeci">virtual void rebuild(const fourdst::composition::Composition &comp, BuildDepthType depth)</div><div class="ttdef"><b>Definition</b> <a href="engine__abstract_8h_source.html#l00309">engine_abstract.h:309</a></div></div>
|
||
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<div class="ttc" id="aclassgridfire_1_1_dynamic_engine_html_a6633b1757c41dd9e1c397333f4f9e785"><div class="ttname"><a href="classgridfire_1_1_dynamic_engine.html#a6633b1757c41dd9e1c397333f4f9e785">gridfire::DynamicEngine::calculateMolarReactionFlow</a></div><div class="ttdeci">virtual double calculateMolarReactionFlow(const reaction::Reaction &reaction, const std::vector< double > &Y, double T9, double rho) const =0</div><div class="ttdoc">Calculate the molar reaction flow for a given reaction.</div></div>
|
||
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<div class="ttc" id="aclassgridfire_1_1_dynamic_engine_html_ad2a82099edbb374bbb2c9509ccdb1037"><div class="ttname"><a href="classgridfire_1_1_dynamic_engine.html#ad2a82099edbb374bbb2c9509ccdb1037">gridfire::DynamicEngine::getNetworkReactions</a></div><div class="ttdeci">virtual const reaction::LogicalReactionSet & getNetworkReactions() const =0</div><div class="ttdoc">Get the set of logical reactions in the network.</div></div>
|
||
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<div class="ttc" id="aclassgridfire_1_1_dynamic_engine_html_ad3d56a8b9161b9cc7f4da51f6bf7e8c9"><div class="ttname"><a href="classgridfire_1_1_dynamic_engine.html#ad3d56a8b9161b9cc7f4da51f6bf7e8c9">gridfire::DynamicEngine::getSpeciesIndex</a></div><div class="ttdeci">virtual int getSpeciesIndex(const fourdst::atomic::Species &species) const =0</div></div>
|
||
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<div class="ttc" id="aclassgridfire_1_1_dynamic_engine_html_afb2ec904d88fc8aab516db4059d0e00f"><div class="ttname"><a href="classgridfire_1_1_dynamic_engine.html#afb2ec904d88fc8aab516db4059d0e00f">gridfire::DynamicEngine::setNetworkReactions</a></div><div class="ttdeci">virtual void setNetworkReactions(const reaction::LogicalReactionSet &reactions)=0</div></div>
|
||
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<div class="ttc" id="aclassgridfire_1_1_network_priming_engine_view_html"><div class="ttname"><a href="classgridfire_1_1_network_priming_engine_view.html">gridfire::NetworkPrimingEngineView</a></div><div class="ttdoc">Provides a view of a DynamicEngine filtered to reactions involving a specified priming species.</div><div class="ttdef"><b>Definition</b> <a href="engine__priming_8h_source.html#l00030">engine_priming.h:30</a></div></div>
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||
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<div class="ttc" id="aclassgridfire_1_1reaction_1_1_reaction_html"><div class="ttname"><a href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></div><div class="ttdoc">Represents a single nuclear reaction from a specific data source.</div><div class="ttdef"><b>Definition</b> <a href="reaction_8h_source.html#l00072">reaction.h:72</a></div></div>
|
||
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<div class="ttc" id="aclassgridfire_1_1reaction_1_1_reaction_html_a0b543e9b0bb4a21efe4b29780d9bdf5b"><div class="ttname"><a href="classgridfire_1_1reaction_1_1_reaction.html#a0b543e9b0bb4a21efe4b29780d9bdf5b">gridfire::reaction::Reaction::reactants</a></div><div class="ttdeci">const std::vector< fourdst::atomic::Species > & reactants() const</div><div class="ttdoc">Gets the vector of reactant species.</div><div class="ttdef"><b>Definition</b> <a href="reaction_8h_source.html#l00216">reaction.h:216</a></div></div>
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<div class="ttc" id="aclassgridfire_1_1reaction_1_1_reaction_html_a78f42664cc957e266b6cf15fda09be97"><div class="ttname"><a href="classgridfire_1_1reaction_1_1_reaction.html#a78f42664cc957e266b6cf15fda09be97">gridfire::reaction::Reaction::peName</a></div><div class="ttdeci">virtual std::string_view peName() const</div><div class="ttdoc">Gets the reaction name in (projectile, ejectile) notation.</div><div class="ttdef"><b>Definition</b> <a href="reaction_8h_source.html#l00122">reaction.h:122</a></div></div>
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<div class="ttc" id="aclassgridfire_1_1reaction_1_1_templated_reaction_set_html_a6a1dc3c56690386ae9f6aa5c2aa37ba2"><div class="ttname"><a href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a6a1dc3c56690386ae9f6aa5c2aa37ba2">gridfire::reaction::TemplatedReactionSet::size</a></div><div class="ttdeci">size_t size() const</div><div class="ttdoc">Gets the number of reactions in the set.</div><div class="ttdef"><b>Definition</b> <a href="reaction_8h_source.html#l00459">reaction.h:459</a></div></div>
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||
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<div class="ttc" id="aconstruction_8h_html"><div class="ttname"><a href="construction_8h.html">construction.h</a></div></div>
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<div class="ttc" id="aengine__abstract_8h_html"><div class="ttname"><a href="engine__abstract_8h.html">engine_abstract.h</a></div><div class="ttdoc">Abstract interfaces for reaction network engines in GridFire.</div></div>
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||
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<div class="ttc" id="aengine__priming_8h_html"><div class="ttname"><a href="engine__priming_8h.html">engine_priming.h</a></div></div>
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<div class="ttc" id="anamespacegridfire_1_1reaction_html"><div class="ttname"><a href="namespacegridfire_1_1reaction.html">gridfire::reaction</a></div><div class="ttdef"><b>Definition</b> <a href="reaction_8h_source.html#l00025">reaction.h:25</a></div></div>
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||
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<div class="ttc" id="anamespacegridfire_html"><div class="ttname"><a href="namespacegridfire.html">gridfire</a></div><div class="ttdef"><b>Definition</b> <a href="engine__abstract_8h_source.html#l00031">engine_abstract.h:31</a></div></div>
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<div class="ttc" id="anamespacegridfire_html_a0210bd2e07538932135a56b62b8ddb57abbd47109890259c0127154db1af26c75"><div class="ttname"><a href="namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57abbd47109890259c0127154db1af26c75">gridfire::NetworkBuildDepth::Full</a></div><div class="ttdeci">@ Full</div><div class="ttdef"><b>Definition</b> <a href="building_8h_source.html#l00022">building.h:22</a></div></div>
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<div class="ttc" id="anamespacegridfire_html_a7c4b6104d5dfc5afddda36f726c5d07d"><div class="ttname"><a href="namespacegridfire.html#a7c4b6104d5dfc5afddda36f726c5d07d">gridfire::calculateCreationRate</a></div><div class="ttdeci">double calculateCreationRate(const DynamicEngine &engine, const fourdst::atomic::Species &species, const std::vector< double > &Y, double T9, double rho)</div><div class="ttdoc">Computes the creation rate for a specific species.</div><div class="ttdef"><b>Definition</b> <a href="#l00213">priming.cpp:213</a></div></div>
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<div class="ttc" id="anamespacegridfire_html_a8bea3d74f35d640e693fa398e9b3e154a186367e42446c004076290ca7913d931"><div class="ttname"><a href="namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a186367e42446c004076290ca7913d931">gridfire::PrimingReportStatus::FAILED_TO_FIND_PRIMING_REACTIONS</a></div><div class="ttdeci">@ FAILED_TO_FIND_PRIMING_REACTIONS</div><div class="ttdef"><b>Definition</b> <a href="reporting_8h_source.html#l00037">reporting.h:37</a></div></div>
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<div class="ttc" id="anamespacegridfire_html_a8bea3d74f35d640e693fa398e9b3e154a64d98633bac1de0eb2a539cbfd2a5c2a"><div class="ttname"><a href="namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a64d98633bac1de0eb2a539cbfd2a5c2a">gridfire::PrimingReportStatus::FULL_SUCCESS</a></div><div class="ttdeci">@ FULL_SUCCESS</div><div class="ttdef"><b>Definition</b> <a href="reporting_8h_source.html#l00032">reporting.h:32</a></div></div>
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<div class="ttc" id="anamespacegridfire_html_a8bea3d74f35d640e693fa398e9b3e154a708c14ec56942aa5f32e7bef1e29db45"><div class="ttname"><a href="namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a708c14ec56942aa5f32e7bef1e29db45">gridfire::PrimingReportStatus::NO_SPECIES_TO_PRIME</a></div><div class="ttdeci">@ NO_SPECIES_TO_PRIME</div><div class="ttdef"><b>Definition</b> <a href="reporting_8h_source.html#l00033">reporting.h:33</a></div></div>
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<div class="ttc" id="anamespacegridfire_html_a8bea3d74f35d640e693fa398e9b3e154a9870268bdece09274aea75557a19158a"><div class="ttname"><a href="namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154a9870268bdece09274aea75557a19158a">gridfire::PrimingReportStatus::FAILED_TO_FIND_CREATION_CHANNEL</a></div><div class="ttdeci">@ FAILED_TO_FIND_CREATION_CHANNEL</div><div class="ttdef"><b>Definition</b> <a href="reporting_8h_source.html#l00036">reporting.h:36</a></div></div>
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<div class="ttc" id="anamespacegridfire_html_a8bea3d74f35d640e693fa398e9b3e154ab837953f2841baabbae6bb5f2e43e71e"><div class="ttname"><a href="namespacegridfire.html#a8bea3d74f35d640e693fa398e9b3e154ab837953f2841baabbae6bb5f2e43e71e">gridfire::PrimingReportStatus::BASE_NETWORK_TOO_SHALLOW</a></div><div class="ttdeci">@ BASE_NETWORK_TOO_SHALLOW</div><div class="ttdef"><b>Definition</b> <a href="reporting_8h_source.html#l00038">reporting.h:38</a></div></div>
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<div class="ttc" id="anamespacegridfire_html_a8f26d5f5fabb42e88261e42bc060cea2"><div class="ttname"><a href="namespacegridfire.html#a8f26d5f5fabb42e88261e42bc060cea2">gridfire::calculateDestructionRateConstant</a></div><div class="ttdeci">double calculateDestructionRateConstant(const DynamicEngine &engine, const fourdst::atomic::Species &species, const std::vector< double > &Y, double T9, double rho)</div><div class="ttdoc">Computes the destruction rate constant for a specific species.</div><div class="ttdef"><b>Definition</b> <a href="#l00193">priming.cpp:193</a></div></div>
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<div class="ttc" id="anamespacegridfire_html_acd0bfdfbce4e84af102d62ff8a797c9f"><div class="ttname"><a href="namespacegridfire.html#acd0bfdfbce4e84af102d62ff8a797c9f">gridfire::primeNetwork</a></div><div class="ttdeci">PrimingReport primeNetwork(const NetIn &, DynamicEngine &engine)</div><div class="ttdoc">Primes absent species in the network to their equilibrium abundances.</div><div class="ttdef"><b>Definition</b> <a href="#l00039">priming.cpp:39</a></div></div>
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<div class="ttc" id="anamespacegridfire_html_aefc63ddbfe97dcb4178c94dfd1c4b256"><div class="ttname"><a href="namespacegridfire.html#aefc63ddbfe97dcb4178c94dfd1c4b256">gridfire::findDominantCreationChannel</a></div><div class="ttdeci">const reaction::Reaction * findDominantCreationChannel(const DynamicEngine &engine, const Species &species, const std::vector< double > &Y, const double T9, const double rho)</div><div class="ttdef"><b>Definition</b> <a href="#l00017">priming.cpp:17</a></div></div>
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<div class="ttc" id="anetwork_8h_html"><div class="ttname"><a href="network_8h.html">network.h</a></div></div>
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<div class="ttc" id="apriming_8h_html"><div class="ttname"><a href="priming_8h.html">priming.h</a></div></div>
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<div class="ttc" id="asolver_8h_html"><div class="ttname"><a href="solver_8h.html">solver.h</a></div></div>
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<div class="ttc" id="astructgridfire_1_1_net_in_html"><div class="ttname"><a href="structgridfire_1_1_net_in.html">gridfire::NetIn</a></div><div class="ttdef"><b>Definition</b> <a href="network_8h_source.html#l00053">network.h:53</a></div></div>
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<div class="ttc" id="astructgridfire_1_1_net_in_html_a06f0dff9f8927b7cf2da3004c8fa1577"><div class="ttname"><a href="structgridfire_1_1_net_in.html#a06f0dff9f8927b7cf2da3004c8fa1577">gridfire::NetIn::density</a></div><div class="ttdeci">double density</div><div class="ttdoc">Density in g/cm^3.</div><div class="ttdef"><b>Definition</b> <a href="network_8h_source.html#l00058">network.h:58</a></div></div>
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<div class="ttc" id="astructgridfire_1_1_net_in_html_a13058f4929e72c1187abbebcddb8aed1"><div class="ttname"><a href="structgridfire_1_1_net_in.html#a13058f4929e72c1187abbebcddb8aed1">gridfire::NetIn::composition</a></div><div class="ttdeci">fourdst::composition::Composition composition</div><div class="ttdoc">Composition of the network.</div><div class="ttdef"><b>Definition</b> <a href="network_8h_source.html#l00054">network.h:54</a></div></div>
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<div class="ttc" id="astructgridfire_1_1_net_in_html_a5be0f5195a5cd1dd177b9fc5ab83a7be"><div class="ttname"><a href="structgridfire_1_1_net_in.html#a5be0f5195a5cd1dd177b9fc5ab83a7be">gridfire::NetIn::temperature</a></div><div class="ttdeci">double temperature</div><div class="ttdoc">Temperature in Kelvin.</div><div class="ttdef"><b>Definition</b> <a href="network_8h_source.html#l00057">network.h:57</a></div></div>
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<div class="ttc" id="astructgridfire_1_1_priming_report_html"><div class="ttname"><a href="structgridfire_1_1_priming_report.html">gridfire::PrimingReport</a></div><div class="ttdoc">Captures the result of a network priming operation.</div><div class="ttdef"><b>Definition</b> <a href="reporting_8h_source.html#l00067">reporting.h:67</a></div></div>
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<div class="ttc" id="astructgridfire_1_1_priming_report_html_a15032fd3354bd8fb383e13929bbd0ceb"><div class="ttname"><a href="structgridfire_1_1_priming_report.html#a15032fd3354bd8fb383e13929bbd0ceb">gridfire::PrimingReport::primedComposition</a></div><div class="ttdeci">fourdst::composition::Composition primedComposition</div><div class="ttdef"><b>Definition</b> <a href="reporting_8h_source.html#l00069">reporting.h:69</a></div></div>
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<div class="ttc" id="astructgridfire_1_1_priming_report_html_a37aa83b55f3da0bc3ff6bcb7b79878a7"><div class="ttname"><a href="structgridfire_1_1_priming_report.html#a37aa83b55f3da0bc3ff6bcb7b79878a7">gridfire::PrimingReport::massFractionChanges</a></div><div class="ttdeci">std::vector< std::pair< fourdst::atomic::Species, double > > massFractionChanges</div><div class="ttdef"><b>Definition</b> <a href="reporting_8h_source.html#l00074">reporting.h:74</a></div></div>
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<div class="ttc" id="astructgridfire_1_1_priming_report_html_a5fec4b465afb4f2d9bc30cd1cab1b50d"><div class="ttname"><a href="structgridfire_1_1_priming_report.html#a5fec4b465afb4f2d9bc30cd1cab1b50d">gridfire::PrimingReport::status</a></div><div class="ttdeci">PrimingReportStatus status</div><div class="ttdef"><b>Definition</b> <a href="reporting_8h_source.html#l00078">reporting.h:78</a></div></div>
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<div class="ttc" id="astructgridfire_1_1_priming_report_html_afa4dd791ddd9df84039554524b681fb3"><div class="ttname"><a href="structgridfire_1_1_priming_report.html#afa4dd791ddd9df84039554524b681fb3">gridfire::PrimingReport::success</a></div><div class="ttdeci">bool success</div><div class="ttdef"><b>Definition</b> <a href="reporting_8h_source.html#l00076">reporting.h:76</a></div></div>
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