GridFire/docs/html/structGridFireContext__coll__graph.svg

<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN"
 "http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd">
<!-- Generated by graphviz version 2.43.0 (0)
 -->
<!-- Title: GridFireContext Pages: 1 -->
<!--zoomable 262 -->

<svg id="main" version="1.1" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" xml:space="preserve" onload="init(evt)">
<style type="text/css"><![CDATA[
.node, .edge {opacity: 0.7;}
.node.selected, .edge.selected {opacity: 1;}
.edge:hover path { stroke: red; }
.edge:hover polygon { stroke: red; fill: red; }
]]></style>

<defs>
  <circle id="rim" cx="0" cy="0" r="7"/>
  <circle id="rim2" cx="0" cy="0" r="3.5"/>
  <g id="zoomPlus">
    <use xlink:href="#rim" fill="#404040"><set attributeName="fill" to="#808080" begin="zoomplus.mouseover" end="zoomplus.mouseout"/></use>
    <path d="M-4,0h8M0,-4v8" fill="none" stroke="white" stroke-width="1.5" pointer-events="none"/>
  </g>
  <g id="zoomMin">
    <use xlink:href="#rim" fill="#404040"><set attributeName="fill" to="#808080" begin="zoomminus.mouseover" end="zoomminus.mouseout"/></use>
    <path d="M-4,0h8" fill="none" stroke="white" stroke-width="1.5" pointer-events="none"/>
  </g>
  <g id="arrowUp" transform="translate(30 24)">
    <use xlink:href="#rim"/>
    <path pointer-events="none" fill="none" stroke="white" stroke-width="1.5" d="M0,-3.0v7 M-2.5,-0.5L0,-3.0L2.5,-0.5"/>
  </g>
  <g id="arrowRight" transform="rotate(90) translate(36 -43)">
    <use xlink:href="#rim"/>
    <path pointer-events="none" fill="none" stroke="white" stroke-width="1.5" d="M0,-3.0v7 M-2.5,-0.5L0,-3.0L2.5,-0.5"/>
  </g>
  <g id="arrowDown" transform="rotate(180) translate(-30 -48)">
    <use xlink:href="#rim"/>
    <path pointer-events="none" fill="none" stroke="white" stroke-width="1.5" d="M0,-3.0v7 M-2.5,-0.5L0,-3.0L2.5,-0.5"/>
  </g>
  <g id="arrowLeft" transform="rotate(270) translate(-36 17)">
    <use xlink:href="#rim"/>
    <path pointer-events="none" fill="none" stroke="white" stroke-width="1.5" d="M0,-3.0v7 M-2.5,-0.5L0,-3.0L2.5,-0.5"/>
  </g>
  <g id="resetDef">
    <use xlink:href="#rim2" fill="#404040"><set attributeName="fill" to="#808080" begin="reset.mouseover" end="reset.mouseout"/></use>
  </g>
</defs>
<script type="application/ecmascript">
var viewWidth = 630;
var viewHeight = 262;
var sectionId = 'dynsection-0';
</script>
<script type="application/ecmascript" xlink:href="svg.min.js"/>
<svg id="graph" class="graph">
<g id="viewport">
<title>GridFireContext</title>
<!-- Node1 -->
<g id="Node000001" class="node">
<title>Node1</title>
<g id="a_Node000001"><a xlink:title=" ">
<polygon fill="#999999" stroke="#666666" points="622,-124.5 529,-124.5 529,-105.5 622,-105.5 622,-124.5"/>
<text text-anchor="middle" x="575.5" y="-112.5" font-family="Helvetica,sans-Serif" font-size="10.00">GridFireContext</text>
</a>
</g>
</g>
<!-- Node2 -->
<g id="Node000002" class="node">
<title>Node2</title>
<g id="a_Node000002"><a xlink:title=" ">
<polygon fill="white" stroke="#666666" points="396,-254 257,-254 257,-224 396,-224 396,-254"/>
<text text-anchor="start" x="265" y="-242" font-family="Helvetica,sans-Serif" font-size="10.00">std::unique_ptr&lt; gridfire</text>
<text text-anchor="middle" x="326.5" y="-231" font-family="Helvetica,sans-Serif" font-size="10.00">::policy::NetworkPolicy &gt;</text>
</a>
</g>
</g>
<!-- Node2&#45;&gt;Node1 -->
<g id="edge1_Node000001_Node000002" class="edge">
<title>Node2&#45;&gt;Node1</title>
<g id="a_edge1_Node000001_Node000002"><a xlink:title=" ">
<path fill="none" stroke="#9a32cd" stroke-dasharray="5,2" d="M406.26,-224.61C440.36,-215.92 479.57,-202.44 511,-182 535.45,-166.1 557.23,-138.94 567.78,-124.57"/>
<polygon fill="#9a32cd" stroke="#9a32cd" points="405.21,-221.27 396.33,-227.05 406.88,-228.07 405.21,-221.27"/>
</a>
</g>
<text text-anchor="middle" x="473.5" y="-217" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> policy</text>
</g>
<!-- Node3 -->
<g id="Node000003" class="node">
<title>Node3</title>
<g id="a_Node000003"><a xlink:href="classgridfire_1_1policy_1_1NetworkPolicy.html" target="_top" xlink:title="Abstract interface for policies that construct DynamicEngine networks from a seed composition.">
<polygon fill="white" stroke="#666666" points="141.5,-254 8.5,-254 8.5,-224 141.5,-224 141.5,-254"/>
<text text-anchor="start" x="16.5" y="-242" font-family="Helvetica,sans-Serif" font-size="10.00">gridfire::policy::Network</text>
<text text-anchor="middle" x="75" y="-231" font-family="Helvetica,sans-Serif" font-size="10.00">Policy</text>
</a>
</g>
</g>
<!-- Node3&#45;&gt;Node2 -->
<g id="edge2_Node000002_Node000003" class="edge">
<title>Node3&#45;&gt;Node2</title>
<g id="a_edge2_Node000002_Node000003"><a xlink:title=" ">
<path fill="none" stroke="#9a32cd" stroke-dasharray="5,2" d="M151.75,-239C185.22,-239 224.3,-239 256.9,-239"/>
<polygon fill="#9a32cd" stroke="#9a32cd" points="151.55,-235.5 141.55,-239 151.55,-242.5 151.55,-235.5"/>
</a>
</g>
<text text-anchor="middle" x="192.5" y="-242" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> ptr</text>
</g>
<!-- Node4 -->
<g id="Node000004" class="node">
<title>Node4</title>
<g id="a_Node000004"><a xlink:href="classgridfire_1_1engine_1_1DynamicEngine.html" target="_top" xlink:title="Abstract class for engines supporting Jacobian and stoichiometry operations.">
<polygon fill="white" stroke="#666666" points="396.5,-206 256.5,-206 256.5,-176 396.5,-176 396.5,-206"/>
<text text-anchor="start" x="264.5" y="-194" font-family="Helvetica,sans-Serif" font-size="10.00">gridfire::engine::Dynamic</text>
<text text-anchor="middle" x="326.5" y="-183" font-family="Helvetica,sans-Serif" font-size="10.00">Engine</text>
</a>
</g>
</g>
<!-- Node4&#45;&gt;Node1 -->
<g id="edge3_Node000001_Node000004" class="edge">
<title>Node4&#45;&gt;Node1</title>
<g id="a_edge3_Node000001_Node000004"><a xlink:title=" ">
<path fill="none" stroke="#9a32cd" stroke-dasharray="5,2" d="M406.82,-174.69C439.52,-167.05 477.51,-156.98 511,-145 526.84,-139.33 544.06,-131.06 556.56,-124.63"/>
<polygon fill="#9a32cd" stroke="#9a32cd" points="405.82,-171.33 396.86,-176.99 407.39,-178.16 405.82,-171.33"/>
</a>
</g>
<text text-anchor="middle" x="473.5" y="-170" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> engine</text>
</g>
<!-- Node5 -->
<g id="Node000005" class="node">
<title>Node5</title>
<g id="a_Node000005"><a xlink:href="classgridfire_1_1engine_1_1Engine.html" target="_top" xlink:title="Abstract base class for a reaction network engine.">
<polygon fill="white" stroke="#666666" points="139.5,-200.5 10.5,-200.5 10.5,-181.5 139.5,-181.5 139.5,-200.5"/>
<text text-anchor="middle" x="75" y="-188.5" font-family="Helvetica,sans-Serif" font-size="10.00">gridfire::engine::Engine</text>
</a>
</g>
</g>
<!-- Node5&#45;&gt;Node4 -->
<g id="edge4_Node000004_Node000005" class="edge">
<title>Node5&#45;&gt;Node4</title>
<g id="a_edge4_Node000004_Node000005"><a xlink:title=" ">
<path fill="none" stroke="#63b8ff" d="M149.85,-191C183.54,-191 223.21,-191 256.31,-191"/>
<polygon fill="#63b8ff" stroke="#63b8ff" points="149.6,-187.5 139.6,-191 149.6,-194.5 149.6,-187.5"/>
</a>
</g>
</g>
<!-- Node6 -->
<g id="Node000006" class="node">
<title>Node6</title>
<g id="a_Node000006"><a xlink:title=" ">
<polygon fill="white" stroke="#666666" points="418,-158 235,-158 235,-128 418,-128 418,-158"/>
<text text-anchor="start" x="243" y="-146" font-family="Helvetica,sans-Serif" font-size="10.00">std::unique_ptr&lt; gridfire</text>
<text text-anchor="middle" x="326.5" y="-135" font-family="Helvetica,sans-Serif" font-size="10.00">::solver::NetworkSolverStrategy &gt;</text>
</a>
</g>
</g>
<!-- Node6&#45;&gt;Node1 -->
<g id="edge5_Node000001_Node000006" class="edge">
<title>Node6&#45;&gt;Node1</title>
<g id="a_edge5_Node000001_Node000006"><a xlink:title=" ">
<path fill="none" stroke="#9a32cd" stroke-dasharray="5,2" d="M428.34,-131.57C463.28,-127.61 500.73,-123.36 528.98,-120.16"/>
<polygon fill="#9a32cd" stroke="#9a32cd" points="427.61,-128.13 418.07,-132.73 428.4,-135.08 427.61,-128.13"/>
</a>
</g>
<text text-anchor="middle" x="473.5" y="-133" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> solver</text>
</g>
<!-- Node7 -->
<g id="Node000007" class="node">
<title>Node7</title>
<g id="a_Node000007"><a xlink:href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html" target="_top" xlink:title="Abstract base class for network solver strategies.">
<polygon fill="white" stroke="#666666" points="150,-158 0,-158 0,-128 150,-128 150,-158"/>
<text text-anchor="start" x="8" y="-146" font-family="Helvetica,sans-Serif" font-size="10.00">gridfire::solver::Network</text>
<text text-anchor="middle" x="75" y="-135" font-family="Helvetica,sans-Serif" font-size="10.00">SolverStrategy&lt; EngineT &gt;</text>
</a>
</g>
</g>
<!-- Node7&#45;&gt;Node6 -->
<g id="edge6_Node000006_Node000007" class="edge">
<title>Node7&#45;&gt;Node6</title>
<g id="a_edge6_Node000006_Node000007"><a xlink:title=" ">
<path fill="none" stroke="#9a32cd" stroke-dasharray="5,2" d="M160.31,-143C184.28,-143 210.49,-143 234.83,-143"/>
<polygon fill="#9a32cd" stroke="#9a32cd" points="160.18,-139.5 150.18,-143 160.18,-146.5 160.18,-139.5"/>
</a>
</g>
<text text-anchor="middle" x="192.5" y="-146" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> ptr</text>
</g>
<!-- Node8 -->
<g id="Node000008" class="node">
<title>Node8</title>
<g id="a_Node000008"><a xlink:title=" ">
<polygon fill="white" stroke="#666666" points="383.5,-110 269.5,-110 269.5,-80 383.5,-80 383.5,-110"/>
<text text-anchor="start" x="277.5" y="-98" font-family="Helvetica,sans-Serif" font-size="10.00">std::vector&lt; fourdst</text>
<text text-anchor="middle" x="326.5" y="-87" font-family="Helvetica,sans-Serif" font-size="10.00">::atomic::Species &gt;</text>
</a>
</g>
</g>
<!-- Node8&#45;&gt;Node1 -->
<g id="edge7_Node000001_Node000008" class="edge">
<title>Node8&#45;&gt;Node1</title>
<g id="a_edge7_Node000001_Node000008"><a xlink:title=" ">
<path fill="none" stroke="#9a32cd" stroke-dasharray="5,2" d="M393.89,-97.68C428.8,-99.42 472.27,-102.1 511,-106 516.76,-106.58 522.8,-107.3 528.77,-108.07"/>
<polygon fill="#9a32cd" stroke="#9a32cd" points="393.97,-94.18 383.81,-97.19 393.63,-101.17 393.97,-94.18"/>
</a>
</g>
<text text-anchor="middle" x="473.5" y="-109" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> speciesList</text>
</g>
<!-- Node9 -->
<g id="Node000009" class="node">
<title>Node9</title>
<g id="a_Node000009"><a xlink:title=" ">
<polygon fill="white" stroke="#666666" points="102,-104.5 48,-104.5 48,-85.5 102,-85.5 102,-104.5"/>
<text text-anchor="middle" x="75" y="-92.5" font-family="Helvetica,sans-Serif" font-size="10.00">Species</text>
</a>
</g>
</g>
<!-- Node9&#45;&gt;Node8 -->
<g id="edge8_Node000008_Node000009" class="edge">
<title>Node9&#45;&gt;Node8</title>
<g id="a_edge8_Node000008_Node000009"><a xlink:title=" ">
<path fill="none" stroke="#9a32cd" stroke-dasharray="5,2" d="M112.36,-95C153.57,-95 221.25,-95 269.28,-95"/>
<polygon fill="#9a32cd" stroke="#9a32cd" points="112.23,-91.5 102.23,-95 112.23,-98.5 112.23,-91.5"/>
</a>
</g>
<text text-anchor="middle" x="192.5" y="-98" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> elements</text>
</g>
<!-- Node10 -->
<g id="Node000010" class="node">
<title>Node10</title>
<g id="a_Node000010"><a xlink:title=" ">
<polygon fill="white" stroke="#666666" points="365.5,-61.5 287.5,-61.5 287.5,-42.5 365.5,-42.5 365.5,-61.5"/>
<text text-anchor="middle" x="326.5" y="-49.5" font-family="Helvetica,sans-Serif" font-size="10.00">Composition</text>
</a>
</g>
</g>
<!-- Node10&#45;&gt;Node1 -->
<g id="edge9_Node000001_Node000010" class="edge">
<title>Node10&#45;&gt;Node1</title>
<g id="a_edge9_Node000001_Node000010"><a xlink:title=" ">
<path fill="none" stroke="#9a32cd" stroke-dasharray="5,2" d="M375.96,-57.18C413.45,-62.03 466.33,-70.71 511,-85 527.37,-90.24 544.97,-98.81 557.48,-105.45"/>
<polygon fill="#9a32cd" stroke="#9a32cd" points="376.17,-53.68 365.81,-55.91 375.3,-60.62 376.17,-53.68"/>
</a>
</g>
<text text-anchor="middle" x="473.5" y="-88" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> working_comp</text>
</g>
<!-- Node11 -->
<g id="Node000011" class="node">
<title>Node11</title>
<g id="a_Node000011"><a xlink:title=" ">
<polygon fill="white" stroke="#666666" points="359,-24.5 294,-24.5 294,-5.5 359,-5.5 359,-24.5"/>
<text text-anchor="middle" x="326.5" y="-12.5" font-family="Helvetica,sans-Serif" font-size="10.00">std::string</text>
</a>
</g>
</g>
<!-- Node11&#45;&gt;Node1 -->
<g id="edge10_Node000001_Node000011" class="edge">
<title>Node11&#45;&gt;Node1</title>
<g id="a_edge10_Node000001_Node000011"><a xlink:title=" ">
<path fill="none" stroke="#9a32cd" stroke-dasharray="5,2" d="M369.64,-16.28C408.43,-19.02 466.52,-27.19 511,-51 536.11,-64.44 557.61,-91.12 567.95,-105.42"/>
<polygon fill="#9a32cd" stroke="#9a32cd" points="369.43,-12.76 359.24,-15.64 369.01,-19.75 369.43,-12.76"/>
</a>
</g>
<text text-anchor="middle" x="473.5" y="-54" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> last_error</text>
</g>
<!-- Node12 -->
<g id="Node000012" class="node">
<title>Node12</title>
<g id="a_Node000012"><a xlink:title=" ">
<polygon fill="white" stroke="#666666" points="127,-30 23,-30 23,0 127,0 127,-30"/>
<text text-anchor="start" x="31" y="-18" font-family="Helvetica,sans-Serif" font-size="10.00">std::basic_string&lt;</text>
<text text-anchor="middle" x="75" y="-7" font-family="Helvetica,sans-Serif" font-size="10.00"> Char &gt;</text>
</a>
</g>
</g>
<!-- Node12&#45;&gt;Node11 -->
<g id="edge11_Node000011_Node000012" class="edge">
<title>Node12&#45;&gt;Node11</title>
<g id="a_edge11_Node000011_Node000012"><a xlink:title=" ">
<path fill="none" stroke="#63b8ff" d="M137.37,-15C186.91,-15 254.6,-15 293.83,-15"/>
<polygon fill="#63b8ff" stroke="#63b8ff" points="137.09,-11.5 127.09,-15 137.09,-18.5 137.09,-11.5"/>
</a>
</g>
</g>
</g>
</svg>

<g id="navigator" transform="translate(0 0)" fill="#404254">
  <rect fill="#f2f5e9" fill-opacity="0.5" stroke="#606060" stroke-width=".5" x="0" y="0" width="60" height="60"/>
  <use id="zoomplus" xlink:href="#zoomPlus" x="17" y="9" onmousedown="handleZoom(evt,'in')"/>
  <use id="zoomminus" xlink:href="#zoomMin" x="42" y="9" onmousedown="handleZoom(evt,'out')"/>
  <use id="reset" xlink:href="#resetDef" x="30" y="36" onmousedown="handleReset()"/>
   <use id="arrowup" xlink:href="#arrowUp" x="0" y="0" onmousedown="handlePan(0,-1)"/>
  <use id="arrowright" xlink:href="#arrowRight" x="0" y="0" onmousedown="handlePan(1,0)"/>
  <use id="arrowdown" xlink:href="#arrowDown" x="0" y="0" onmousedown="handlePan(0,1)"/>
  <use id="arrowleft" xlink:href="#arrowLeft" x="0" y="0" onmousedown="handlePan(-1,0)"/>
</g>
<svg viewBox="0 0 15 15" width="100%" height="30px" preserveAspectRatio="xMaxYMin meet">
 <g id="arrow_out" transform="scale(0.3 0.3)">
  <a xlink:href="structGridFireContext__coll__graph_org.svg" target="_base">
   <rect id="button" ry="5" rx="5" y="6" x="6" height="38" width="38"
        fill="#f2f5e9" fill-opacity="0.5" stroke="#606060" stroke-width="1.0"/>
   <path id="arrow"
     d="M 11.500037,31.436501 C 11.940474,20.09759 22.043105,11.32322 32.158766,21.979434 L 37.068811,17.246167 C 37.068811,17.246167 37.088388,32 37.088388,32 L 22.160133,31.978069 C 22.160133,31.978069 26.997745,27.140456 26.997745,27.140456 C 18.528582,18.264221 13.291696,25.230495 11.500037,31.436501 z"
     style="fill:#404040;"/>
  </a>
 </g>
</svg>

<style type='text/css'>
<![CDATA[
[data-mouse-over-selected='false'] { opacity: 0.7; }
[data-mouse-over-selected='true']  { opacity: 1.0; }
]]>
</style>
<script type="application/ecmascript"><![CDATA[
document.addEventListener('DOMContentLoaded', (event) => {
  highlightEdges();
  highlightAdjacentNodes();
});
]]></script>
</svg>