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2026-04-20 12:45:31 -04:00
< div id = "projectname" > GridFire< span id = "projectnumber" >   v0.7.6rc4.0< / span >
2025-11-24 09:08:28 -05:00
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< div id = "projectbrief" > General Purpose Nuclear Network< / div >
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< div class = "headertitle" > < div class = "title" > gridfire::engine::GraphEngine Member List< / div > < / div >
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< p > This is the complete list of members for < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > , including all inherited members.< / p >
< table class = "directory" >
2026-04-20 12:45:31 -04:00
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#ab5c4f7868ccd28fcf256e1e252c78517" > accumulate_flows_serial< / a > (scratch::StateBlob & ctx, const std::vector< double > & local_abundances, const std::vector< double > & screening_factors, const std::vector< double > & bare_rates, const std::vector< double > & bare_reverse_rates, double rho, const reaction::ReactionSet & activeReactions) const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a0dca83ce5226859b6b605889aca8ecc9" > addReaction< / a > (const reaction::Reaction & reaction)< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a6288b4006fb9d43dc4ef199f3b9f91fe" > addReaction< / a > (const std::string & reaction_id)< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a5970c97be4c7b5b764ce1155b5c7f870" > calculateAllDerivatives< / a > (const std::vector< T > & Y_in, T T9, T rho, T Ye, T mue, std::function< std::optional< size_t > (const fourdst::atomic::Species & )> speciesLookup, const std::function< bool(const reaction::Reaction & )> & reactionLookup) const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a23187ad3ee504de46f59e1644c715c9f" > calculateAllDerivatives< / a > (const std::vector< T > & Y_in, const T T9, const T rho, const T Ye, const T mue, const std::function< std::optional< size_t > (const fourdst::atomic::Species & )> speciesLookup, const std::function< bool(const reaction::Reaction & )> & reactionLookup) const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#ad3ab19d036a9f1484f527442b2dad958" > calculateAllDerivativesUsingPrecomputation< / a > (scratch::StateBlob & ctx, const fourdst::composition::CompositionAbstract & comp, const std::vector< double > & bare_rates, const std::vector< double > & bare_reverse_rates, double T9, double rho, const reaction::ReactionSet & activeReactions) const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#aa265b90b5ec153e1e71acb2d0e8fad36" > calculateEpsDerivatives< / a > (scratch::StateBlob & , const fourdst::composition::CompositionAbstract & comp, double T9, double rho) const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a00398599c658d7c0cebfd15f6465ea7d" > calculateEpsDerivatives< / a > (scratch::StateBlob & , const fourdst::composition::CompositionAbstract & comp, double T9, double rho, const reaction::ReactionSet & activeReactions) const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a154eda68e5df7f45b0e59b17761177b3" > calculateMolarReactionFlow< / a > (scratch::StateBlob & , const reaction::Reaction & reaction, const fourdst::composition::CompositionAbstract & comp, double T9, double rho) const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#aab80f2ab29ad9c7867e75e499148aa1f" > calculateMolarReactionFlow< / a > (const reaction::Reaction & reaction, const std::vector< T > & Y, T T9, T rho, T Ye, T mue, const std::function< std::optional< size_t > (const fourdst::atomic::Species & )> & speciesIDLookup) const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a2e7012382ee44473478ebc37ac36695c" > calculateReverseMolarReactionFlow< / a > (T T9, T rho, std::vector< T > screeningFactors, const std::vector< T > & Y, size_t reactionIndex, const reaction::Reaction & reaction) const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a4dd5733c77e9a7ad8b5e541c187fabae" > calculateReverseRate< / a > (const reaction::Reaction & reaction, double T9, double rho, const fourdst::composition::CompositionAbstract & comp) const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#aa6b07108beeab1bc75c3099c25be7833" > calculateReverseRateTwoBody< / a > (const reaction::Reaction & reaction, double T9, double forwardRate, double expFactor) const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a83ef40080c62d667b3fee71237efd2e0" > calculateReverseRateTwoBodyDerivative< / a > (const reaction::Reaction & reaction, double T9, double rho, const fourdst::composition::Composition & comp, double reverseRate) const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a474ba2ca2d24cb90ee73af042993dd14" > calculateRHSAndEnergy< / a > (scratch::StateBlob & , const fourdst::composition::CompositionAbstract & comp, double T9, double rho, bool trust) const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a7bd6fbf8bc5256a3437ea2731fadf4e4" > calculateRHSAndEnergy< / a > (scratch::StateBlob & , const fourdst::composition::CompositionAbstract & comp, double T9, double rho, const reaction::ReactionSet & activeReactions) const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a5fadd1bb2692e1527ce24295c77cfc72" > collectAtomicReverseRateAtomicBases< / a > ()< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a1c977a772eedae1cceeb6b50d984fde4" > collectComposition< / a > (scratch::StateBlob & , const fourdst::composition::CompositionAbstract & comp, double T9, double rho) const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a8f29c77e777fdc6517f2c7778537ba6f" > collectNetworkSpecies< / a > ()< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a698cbb0c4e0028924b116906787e342a" > compute_neutrino_fluxes< / a > (scratch::StateBlob & ctx, double netFlow, const reaction::Reaction & reaction) const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#ad6b75b38b3c67276ad5fe254a36bf8f6" > compute_reaction_flow< / a > (scratch::StateBlob & ctx, const std::vector< double > & local_abundances, const std::vector< double > & screening_factors, const std::vector< double > & bare_rates, const std::vector< double > & bare_reverse_rates, double rho, size_t reactionCounter, const reaction::Reaction & reaction, size_t reactionIndex, const PrecomputedReaction & precomputedReaction) const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#acfe338ed3b10a4f116e58b2693a7fe10" > constructStateBlob< / a > (const scratch::StateBlob *blob=nullptr) const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#adab81a7a56e2d9fd1ca46c20bf971912" > exportToCSV< / a > (scratch::StateBlob & ctx, const std::string & filename) const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#ac5f6bbc54d65a974dce4ad407617779a" > exportToDot< / a > (scratch::StateBlob & ctx, const std::string & filename) const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#acaef2178b6bd13ee478a9aa03bd12da9" > generate_jacobian_sparsity_pattern< / a > ()< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#ab7efbe72c39d2828eeed4e20f319a2c8" > generateJacobianMatrix< / a > (scratch::StateBlob & , const fourdst::composition::CompositionAbstract & comp, double T9, double rho) const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a72130974401a22155dfd9a2e68192d56" > generateJacobianMatrix< / a > (scratch::StateBlob & , const fourdst::composition::CompositionAbstract & comp, double T9, double rho, const std::vector< fourdst::atomic::Species > & activeSpecies) const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a7704e02c04de922ae6b01f4ba2b88148" > generateJacobianMatrix< / a > (scratch::StateBlob & , const fourdst::composition::CompositionAbstract & comp, double T9, double rho, const SparsityPattern & sparsityPattern) const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a769ac1cbf84d20afe66598aa325e7f7c" > get_store_intermediate_reaction_contributions< / a > () const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > inline< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a0faf9ad41f916c09e65d58890a854248" > getAuthoritativeADFun< / a > () const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > inline< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_dynamic_engine.html#ac87099ff654ca30a8d8224f4779e1a15" > getInactiveNetworkReactions< / a > (scratch::StateBlob & ctx) const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_dynamic_engine.html" > gridfire::engine::DynamicEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > inline< / span > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_dynamic_engine.html#adc0a33fa6e9d8de3b433fef55f3a6972" > getInactiveReactionMolarReactionFlow< / a > (scratch::StateBlob & ctx, const reaction::Reaction & reaction, const fourdst::composition::CompositionAbstract & comp, const double T9, const double rho) const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_dynamic_engine.html" > gridfire::engine::DynamicEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > inline< / span > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a0e484a5fcabc2ced4552e92078fcc03d" > getMostRecentRHSCalculation< / a > (scratch::StateBlob & ) const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a90e87465ba1e80af7124c0e4614d433b" > getNetworkReactions< / a > (scratch::StateBlob & ) const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a6b7e2d8391114f25d74d986d919715c9" > getNetworkSpecies< / a > (scratch::StateBlob & ctx) const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a3ef1320e4fb1160d37f93e3eefd38c50" > getPartitionFunction< / a > (scratch::StateBlob & ctx) const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a69b478b15844d145219c9c5a4e515e59" > getScreeningModel< / a > (scratch::StateBlob & ctx) const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a32ab9175e93ae29f87b0903400cb3521" > getSpeciesDestructionTimescales< / a > (scratch::StateBlob & , const fourdst::composition::CompositionAbstract & comp, double T9, double rho) const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#ae2a9f08ef597884e61a7d8e53c23ef17" > getSpeciesDestructionTimescales< / a > (scratch::StateBlob & ctx, const fourdst::composition::CompositionAbstract & comp, double T9, double rho, const reaction::ReactionSet & activeReactions) const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a4d339f84e5f44af004b14d69ce10ee21" > getSpeciesIndex< / a > (scratch::StateBlob & ctx, const fourdst::atomic::Species & species) const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a763332410f64d2492785d2053bdad5fe" > getSpeciesStatus< / a > (scratch::StateBlob & , const fourdst::atomic::Species & species) const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a88ee4feaa851d047d110cd0949ed845f" > getSpeciesTimescales< / a > (scratch::StateBlob & , const fourdst::composition::CompositionAbstract & comp, double T9, double rho) const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a39d800c17b054f10a47100b552364902" > getSpeciesTimescales< / a > (scratch::StateBlob & , const fourdst::composition::CompositionAbstract & comp, double T9, double rho, const reaction::ReactionSet & activeReactions) const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < / td > < / tr >
2025-11-24 09:08:28 -05:00
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a530a5563c5a7a76650edb1657868a289" > GraphEngine< / a > (const fourdst::composition::Composition & composition, BuildDepthType=NetworkBuildDepth::Full)< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > explicit< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a885887bc4ff09c810e79eb68b79e7e2a" > GraphEngine< / a > (const fourdst::composition::Composition & composition, const partition::PartitionFunction & partitionFunction, BuildDepthType buildDepth=NetworkBuildDepth::Full)< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > explicit< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#ad73fec5f24f5ee74020ca70cdaa104e3" > GraphEngine< / a > (const fourdst::composition::Composition & composition, const partition::PartitionFunction & partitionFunction, BuildDepthType buildDepth, NetworkConstructionFlags reactionTypes)< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > explicit< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a00f8aafa14ae665d8e556b35a7934587" > GraphEngine< / a > (const reaction::ReactionSet & reactions)< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > explicit< / span > < / td > < / tr >
2026-04-20 12:45:31 -04:00
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a6c231f340fe4add5dce308a79cc0f136" > involvesSpecies< / a > (scratch::StateBlob & ctx, const fourdst::atomic::Species & species) const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#adc9e6e5d8bab57ff2823ad01653cf9f5" > isPrecomputationEnabled< / a > (scratch::StateBlob & ctx) const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#af61c53c080637d8d601c0def9942a901" > isUsingReverseReactions< / a > (scratch::StateBlob & ctx) const< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a19305dc4affde99bb84056c9eeda9f1e" > JacobianMatrixState< / a > enum name< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#ac02ff3a8828e281209013f5c564083d0" > m_atomicReverseRates< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a83fa78621f43397373f35108f580abab" > m_authoritativeADFun< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a77527b049b97b2611f5da5279780f5ec" > m_config< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
2025-11-24 09:08:28 -05:00
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#aab2701ed1d1262071072175647674b43" > m_constants< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#ae2fef545142356c7f2f2f5ae3cba6d90" > m_depth< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
2026-04-20 12:45:31 -04:00
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a636caa7f8085153424e17dc6e343a326" > m_full_jacobian_sparsity_pattern< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#af68112da3edc1a8c88289b8e7242180e" > m_full_sparsity_set< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
2025-11-24 09:08:28 -05:00
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#aac9f28dd58bc0d40a643885c95c2ab52" > m_indexToSpeciesMap< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
2026-04-20 12:45:31 -04:00
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a0a8d12341ecf52446faef9dd8c7dc81e" > m_jacobianMatrixStateNameMap< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a8a121839fe3a7a35e4214fd20e753f9f" > m_logger< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a544299e2495c6cac339b767e932e37b3" > m_networkSpecies< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a3413c72ee010534a510160e38c3b2a0c" > m_networkSpeciesMap< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a9f0e38be889a964d0b6e62934a1220db" > m_partitionFunction< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a2f2e2c700288af48f6fe50a61bb86624" > m_precomputed_reaction_index_map< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a0afa15c074fa830e00d981c5786d3ac1" > m_precomputed_reactions< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#af7dab9063bb92aac64b6dfa755074739" > m_reactionIDMap< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a249a9237865b0cf6906b360e4cb7c1ec" > m_reactions< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
2025-11-24 09:08:28 -05:00
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a3e91570fbffc48748ad352e4554a728b" > m_screeningModel< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#abdff5b7eeb73ed327ba6b758038ef776" > m_screeningType< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a2421bbbdcc9fb02d9cb6e584da393c83" > m_speciesToIndexMap< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
2026-04-20 12:45:31 -04:00
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#aadd0e4ba48fa8daaff3372cb5efa5dcb" > m_store_intermediate_reaction_contributions< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
2025-11-24 09:08:28 -05:00
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a1f4e11a70ce65d544e9800d552a65cc8" > m_usePrecomputation< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#ac9a0d4d0eec32145bf8f2b688a1d988d" > m_useReverseReactions< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a4fd4daf4f4ef658e7c0617223a74d824" > m_weakRateInterpolator< / a > < / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
2026-04-20 12:45:31 -04:00
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a6ccfb1813ce5b5c9568434f47e06726a" > populateReactionIDMap< / a > ()< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a7e5c8d9b996e5bc7fc130d34dd196a4b" > populateSpeciesToIndexMap< / a > ()< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#ac7814b9922c7fee4c5a2649127dcdadc" > precomputeNetwork< / a > ()< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#ab77179dadc7c41551f8eb4a3321283d4" > primeEngine< / a > (scratch::StateBlob & ctx, const NetIn & netIn) const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a58221a92813e13e43de48525980301d4" > project< / a > (scratch::StateBlob & ctx, const NetIn & netIn) const override< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#af9cba639f9eeac0b746ef073670292e6" > recordADTape< / a > ()< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#ac1958cc24ff3c69eac7b5b9e7bb6e510" > set_store_intermediate_reaction_contributions< / a > (const bool value)< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > inline< / span > < / td > < / tr >
2025-11-24 09:08:28 -05:00
< tr class = "even" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html#a9af928bf8a5327d3cb45254c0e59f914" > syncInternalMaps< / a > ()< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_graph_engine.html" > gridfire::engine::GraphEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > private< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_engine.html#af0ea99416c28933d364a872fc6aff556" > ~Engine< / a > ()=default< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_engine.html" > gridfire::engine::Engine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
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