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< tr class = "memitem:" > < td class = "memItemLeft" align = "right" valign = "top" > namespace   < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "namespacegridfire_1_1approx8.html" > approx8< / a > < / td > < / tr >
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< tr class = "memitem:" > < td class = "memItemLeft" align = "right" valign = "top" > namespace   < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "namespacegridfire_1_1io.html" > io< / a > < / td > < / tr >
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< tr class = "memitem:" > < td class = "memItemLeft" align = "right" valign = "top" > namespace   < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "namespacegridfire_1_1reaclib.html" > reaclib< / a > < / td > < / tr >
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Classes< / h2 > < / td > < / tr >
< tr class = "memitem:" > < td class = "memItemLeft" align = "right" valign = "top" > class   < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "classgridfire_1_1_adaptive_engine_view.html" > AdaptiveEngineView< / a > < / td > < / tr >
< tr class = "memdesc:" > < td class = "mdescLeft" >   < / td > < td class = "mdescRight" > An engine view that dynamically adapts the reaction network based on runtime conditions. < a href = "classgridfire_1_1_adaptive_engine_view.html#details" > More...< / a > < br / > < / td > < / tr >
< tr class = "separator:" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
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< tr class = "memdesc:" > < td class = "mdescLeft" >   < / td > < td class = "mdescRight" > Abstract class for engines supporting Jacobian and stoichiometry operations. < a href = "classgridfire_1_1_dynamic_engine.html#details" > More...< / a > < br / > < / td > < / tr >
< tr class = "separator:" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
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< tr class = "memdesc:" > < td class = "mdescLeft" >   < / td > < td class = "mdescRight" > Abstract base class for a reaction network engine. < a href = "classgridfire_1_1_engine.html#details" > More...< / a > < br / > < / td > < / tr >
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< tr class = "memdesc:" > < td class = "mdescLeft" >   < / td > < td class = "mdescRight" > Abstract base class for a "view" of a reaction network engine. < a href = "classgridfire_1_1_engine_view.html#details" > More...< / a > < br / > < / td > < / tr >
< tr class = "separator:" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
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< tr class = "memitem:" > < td class = "memItemLeft" align = "right" valign = "top" > class   < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "classgridfire_1_1_graph_engine.html" > GraphEngine< / a > < / td > < / tr >
< tr class = "memdesc:" > < td class = "mdescLeft" >   < / td > < td class = "mdescRight" > A reaction network engine that uses a graph-based representation. < a href = "classgridfire_1_1_graph_engine.html#details" > More...< / a > < br / > < / td > < / tr >
< tr class = "separator:" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
< tr class = "memitem:" > < td class = "memItemLeft" align = "right" valign = "top" > struct   < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "structgridfire_1_1_net_in.html" > NetIn< / a > < / td > < / tr >
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< tr class = "memitem:" > < td class = "memItemLeft" align = "right" valign = "top" > struct   < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "structgridfire_1_1_step_derivatives.html" > StepDerivatives< / a > < / td > < / tr >
< tr class = "memdesc:" > < td class = "mdescLeft" >   < / td > < td class = "mdescRight" > Structure holding derivatives and energy generation for a network step. < a href = "structgridfire_1_1_step_derivatives.html#details" > More...< / a > < br / > < / td > < / tr >
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Concepts< / h2 > < / td > < / tr >
< tr class = "memitem:" > < td class = "memItemLeft" align = "right" valign = "top" > concept   < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "conceptgridfire_1_1_is_arithmetic_or_a_d.html" > IsArithmeticOrAD< / a > < / td > < / tr >
< tr class = "memdesc:" > < td class = "mdescLeft" >   < / td > < td class = "mdescRight" > Concept for types allowed in engine calculations. < br / > < / td > < / tr >
< tr class = "separator:" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
< tr class = "memitem:" > < td class = "memItemLeft" align = "right" valign = "top" > concept   < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "conceptgridfire_1_1_engine_type.html" > EngineType< / a > < / td > < / tr >
< tr class = "memdesc:" > < td class = "mdescLeft" >   < / td > < td class = "mdescRight" > Concept for types allowed as engine bases in EngineView. < br / > < / td > < / tr >
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< / table > < table class = "memberdecls" >
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Typedefs< / h2 > < / td > < / tr >
< tr class = "memitem:a1121d0b2d005195333412559fa29d3cc" id = "r_a1121d0b2d005195333412559fa29d3cc" > < td class = "memItemLeft" align = "right" valign = "top" > typedef CppAD::AD< double >   < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#a1121d0b2d005195333412559fa29d3cc" > ADDouble< / a > < / td > < / tr >
< tr class = "memdesc:a1121d0b2d005195333412559fa29d3cc" > < td class = "mdescLeft" >   < / td > < td class = "mdescRight" > Alias for CppAD AD type for double precision. < br / > < / td > < / tr >
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Enumerations< / h2 > < / td > < / tr >
< tr class = "memitem:a3f3d6b3f9742b70e62049ccefbb60f37" id = "r_a3f3d6b3f9742b70e62049ccefbb60f37" > < td class = "memItemLeft" align = "right" valign = "top" > enum   < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#a3f3d6b3f9742b70e62049ccefbb60f37" > NetworkFormat< / a > { < a class = "el" href = "#a3f3d6b3f9742b70e62049ccefbb60f37a1fc7adf719c40457abfdb8334675faea" > APPROX8< / a >
, < a class = "el" href = "#a3f3d6b3f9742b70e62049ccefbb60f37a9b8db7b445ae4f1bd114caa42a583182" > REACLIB< / a >
, < a class = "el" href = "#a3f3d6b3f9742b70e62049ccefbb60f37aac700abde5f6ff8b7328193eb19697b2" > UNKNOWN< / a >
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Functions< / h2 > < / td > < / tr >
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< tr class = "memitem:aa77f83539d9ae90e3bf541309bd9c83a" id = "r_aa77f83539d9ae90e3bf541309bd9c83a" > < td class = "memItemLeft" align = "right" valign = "top" > < a class = "el" href = "namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31" > reaction::LogicalReactionSet< / a >   < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#aa77f83539d9ae90e3bf541309bd9c83a" > build_reaclib_nuclear_network< / a > (const fourdst::composition::Composition & composition, bool reverse)< / td > < / tr >
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< tr class = "separator:aa77f83539d9ae90e3bf541309bd9c83a" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
< tr class = "memitem:a8b245f261cd8d1711ae8d593b054cf98" id = "r_a8b245f261cd8d1711ae8d593b054cf98" > < td class = "memItemLeft" align = "right" valign = "top" > std::string  < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#a8b245f261cd8d1711ae8d593b054cf98" > trim_whitespace< / a > (const std::string & str)< / td > < / tr >
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< tr class = "heading" > < td colspan = "2" > < h2 class = "groupheader" > < a id = "var-members" name = "var-members" > < / a >
Variables< / h2 > < / td > < / tr >
< tr class = "memitem:ada3c137c014ecd8d06200fea2d1a9f50" id = "r_ada3c137c014ecd8d06200fea2d1a9f50" > < td class = "memItemLeft" align = "right" valign = "top" > static constexpr double  < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#ada3c137c014ecd8d06200fea2d1a9f50" > MIN_DENSITY_THRESHOLD< / a > = 1e-18< / td > < / tr >
< tr class = "memdesc:ada3c137c014ecd8d06200fea2d1a9f50" > < td class = "mdescLeft" >   < / td > < td class = "mdescRight" > Minimum density threshold below which reactions are ignored. < br / > < / td > < / tr >
< tr class = "separator:ada3c137c014ecd8d06200fea2d1a9f50" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
< tr class = "memitem:a96c062f94713921e5d7568ecedcdcb06" id = "r_a96c062f94713921e5d7568ecedcdcb06" > < td class = "memItemLeft" align = "right" valign = "top" > static constexpr double  < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#a96c062f94713921e5d7568ecedcdcb06" > MIN_ABUNDANCE_THRESHOLD< / a > = 1e-18< / td > < / tr >
< tr class = "memdesc:a96c062f94713921e5d7568ecedcdcb06" > < td class = "mdescLeft" >   < / td > < td class = "mdescRight" > Minimum abundance threshold below which species are ignored. < br / > < / td > < / tr >
< tr class = "separator:a96c062f94713921e5d7568ecedcdcb06" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
< tr class = "memitem:ae01b1738df1921db565bcbd68dd6cf64" id = "r_ae01b1738df1921db565bcbd68dd6cf64" > < td class = "memItemLeft" align = "right" valign = "top" > static constexpr double  < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#ae01b1738df1921db565bcbd68dd6cf64" > MIN_JACOBIAN_THRESHOLD< / a > = 1e-24< / td > < / tr >
< tr class = "memdesc:ae01b1738df1921db565bcbd68dd6cf64" > < td class = "mdescLeft" >   < / td > < td class = "mdescRight" > Minimum value for Jacobian matrix entries. < br / > < / td > < / tr >
< tr class = "separator:ae01b1738df1921db565bcbd68dd6cf64" > < td class = "memSeparator" colspan = "2" >   < / td > < / tr >
< tr class = "memitem:a4e9cabad30b57d636c2f0d73d8cc6bb4" id = "r_a4e9cabad30b57d636c2f0d73d8cc6bb4" > < td class = "memItemLeft" align = "right" valign = "top" > static std::unordered_map< < a class = "el" href = "#a3f3d6b3f9742b70e62049ccefbb60f37" > NetworkFormat< / a > , std::string >   < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "#a4e9cabad30b57d636c2f0d73d8cc6bb4" > FormatStringLookup< / a > < / td > < / tr >
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< / table >
< h2 class = "groupheader" > Typedef Documentation< / h2 >
< a id = "a1121d0b2d005195333412559fa29d3cc" name = "a1121d0b2d005195333412559fa29d3cc" > < / a >
< h2 class = "memtitle" > < span class = "permalink" > < a href = "#a1121d0b2d005195333412559fa29d3cc" > ◆   < / a > < / span > ADDouble< / h2 >
< div class = "memitem" >
< div class = "memproto" >
< table class = "memname" >
< tr >
< td class = "memname" > typedef CppAD::AD< double> < a class = "el" href = "#a1121d0b2d005195333412559fa29d3cc" > gridfire::ADDouble< / a > < / td >
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< p > Alias for CppAD AD type for double precision. < / p >
< p > This alias simplifies the use of the CppAD automatic differentiation type. < / p >
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< p class = "definition" > Definition at line < a class = "el" href = "engine__graph_8h_source.html#l00034" > 34< / a > of file < a class = "el" href = "engine__graph_8h_source.html" > engine_graph.h< / a > .< / p >
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< h2 class = "memtitle" > < span class = "permalink" > < a href = "#a3f3d6b3f9742b70e62049ccefbb60f37" > ◆   < / a > < / span > NetworkFormat< / h2 >
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< tr > < th colspan = "2" > Enumerator< / th > < / tr > < tr > < td class = "fieldname" > < a id = "a3f3d6b3f9742b70e62049ccefbb60f37a1fc7adf719c40457abfdb8334675faea" name = "a3f3d6b3f9742b70e62049ccefbb60f37a1fc7adf719c40457abfdb8334675faea" > < / a > APPROX8  < / td > < td class = "fielddoc" > < p > Approx8 nuclear reaction network format. < / p >
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< tr > < td class = "fieldname" > < a id = "a3f3d6b3f9742b70e62049ccefbb60f37a9b8db7b445ae4f1bd114caa42a583182" name = "a3f3d6b3f9742b70e62049ccefbb60f37a9b8db7b445ae4f1bd114caa42a583182" > < / a > REACLIB  < / td > < td class = "fielddoc" > < p > General REACLIB nuclear reaction network format. < / p >
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< tr > < td class = "fieldname" > < a id = "a3f3d6b3f9742b70e62049ccefbb60f37aac700abde5f6ff8b7328193eb19697b2" name = "a3f3d6b3f9742b70e62049ccefbb60f37aac700abde5f6ff8b7328193eb19697b2" > < / a > UNKNOWN  < / td > < td class = "fielddoc" > < / td > < / tr >
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< p class = "definition" > Definition at line < a class = "el" href = "network_8h_source.html#l00041" > 41< / a > of file < a class = "el" href = "network_8h_source.html" > network.h< / a > .< / p >
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< h2 class = "groupheader" > Function Documentation< / h2 >
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< h2 class = "memtitle" > < span class = "permalink" > < a href = "#aa77f83539d9ae90e3bf541309bd9c83a" > ◆   < / a > < / span > build_reaclib_nuclear_network()< / h2 >
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< td class = "memname" > < a class = "el" href = "namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31" > reaction::LogicalReactionSet< / a > gridfire::build_reaclib_nuclear_network < / td >
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< td > (< / td >
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< p class = "definition" > Definition at line < a class = "el" href = "network_8cpp_source.html#l00064" > 64< / a > of file < a class = "el" href = "network_8cpp_source.html" > network.cpp< / a > .< / p >
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< td class = "memname" > std::string gridfire::trim_whitespace < / td >
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< p class = "definition" > Definition at line < a class = "el" href = "network_8cpp_source.html#l00091" > 91< / a > of file < a class = "el" href = "network_8cpp_source.html" > network.cpp< / a > .< / p >
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< h2 class = "groupheader" > Variable Documentation< / h2 >
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< h2 class = "memtitle" > < span class = "permalink" > < a href = "#a4e9cabad30b57d636c2f0d73d8cc6bb4" > ◆   < / a > < / span > FormatStringLookup< / h2 >
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< td class = "memname" > std::unordered_map< < a class = "el" href = "#a3f3d6b3f9742b70e62049ccefbb60f37" > NetworkFormat< / a > , std::string> gridfire::FormatStringLookup< / td >
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< b > Initial value:< / b > < div class = "fragment" > < div class = "line" > = {< / div >
< div class = "line" > {< a class = "code hl_enumvalue" href = "#a3f3d6b3f9742b70e62049ccefbb60f37a1fc7adf719c40457abfdb8334675faea" > APPROX8< / a > , < span class = "stringliteral" > " Approx8" < / span > },< / div >
< div class = "line" > {< a class = "code hl_enumvalue" href = "#a3f3d6b3f9742b70e62049ccefbb60f37a9b8db7b445ae4f1bd114caa42a583182" > REACLIB< / a > , < span class = "stringliteral" > " REACLIB" < / span > },< / div >
< div class = "line" > {< a class = "code hl_enumvalue" href = "#a3f3d6b3f9742b70e62049ccefbb60f37aac700abde5f6ff8b7328193eb19697b2" > UNKNOWN< / a > , < span class = "stringliteral" > " Unknown" < / span > }< / div >
< div class = "line" > }< / div >
< div class = "ttc" id = "anamespacegridfire_html_a3f3d6b3f9742b70e62049ccefbb60f37a1fc7adf719c40457abfdb8334675faea" > < div class = "ttname" > < a href = "#a3f3d6b3f9742b70e62049ccefbb60f37a1fc7adf719c40457abfdb8334675faea" > gridfire::APPROX8< / a > < / div > < div class = "ttdeci" > @ APPROX8< / div > < div class = "ttdoc" > Approx8 nuclear reaction network format.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "network_8h_source.html#l00042" > network.h:42< / a > < / div > < / div >
< div class = "ttc" id = "anamespacegridfire_html_a3f3d6b3f9742b70e62049ccefbb60f37a9b8db7b445ae4f1bd114caa42a583182" > < div class = "ttname" > < a href = "#a3f3d6b3f9742b70e62049ccefbb60f37a9b8db7b445ae4f1bd114caa42a583182" > gridfire::REACLIB< / a > < / div > < div class = "ttdeci" > @ REACLIB< / div > < div class = "ttdoc" > General REACLIB nuclear reaction network format.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "network_8h_source.html#l00043" > network.h:43< / a > < / div > < / div >
< div class = "ttc" id = "anamespacegridfire_html_a3f3d6b3f9742b70e62049ccefbb60f37aac700abde5f6ff8b7328193eb19697b2" > < div class = "ttname" > < a href = "#a3f3d6b3f9742b70e62049ccefbb60f37aac700abde5f6ff8b7328193eb19697b2" > gridfire::UNKNOWN< / a > < / div > < div class = "ttdeci" > @ UNKNOWN< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "network_8h_source.html#l00044" > network.h:44< / a > < / div > < / div >
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< h2 class = "memtitle" > < span class = "permalink" > < a href = "#a96c062f94713921e5d7568ecedcdcb06" > ◆   < / a > < / span > MIN_ABUNDANCE_THRESHOLD< / h2 >
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< td class = "memname" > double gridfire::MIN_ABUNDANCE_THRESHOLD = 1e-18< / td >
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< p > Minimum abundance threshold below which species are ignored. < / p >
< p > Species with abundances below this threshold are treated as zero in reaction rate calculations. This helps to improve performance by avoiding unnecessary calculations for trace species. < / p >
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< p class = "definition" > Definition at line < a class = "el" href = "engine__graph_8h_source.html#l00056" > 56< / a > of file < a class = "el" href = "engine__graph_8h_source.html" > engine_graph.h< / a > .< / p >
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< h2 class = "memtitle" > < span class = "permalink" > < a href = "#ada3c137c014ecd8d06200fea2d1a9f50" > ◆   < / a > < / span > MIN_DENSITY_THRESHOLD< / h2 >
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< td class = "memname" > double gridfire::MIN_DENSITY_THRESHOLD = 1e-18< / td >
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< p > Minimum density threshold below which reactions are ignored. < / p >
< p > Reactions are not calculated if the density falls below this threshold. This helps to improve performance by avoiding unnecessary calculations in very low-density regimes. < / p >
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< p class = "definition" > Definition at line < a class = "el" href = "engine__graph_8h_source.html#l00047" > 47< / a > of file < a class = "el" href = "engine__graph_8h_source.html" > engine_graph.h< / a > .< / p >
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< h2 class = "memtitle" > < span class = "permalink" > < a href = "#ae01b1738df1921db565bcbd68dd6cf64" > ◆   < / a > < / span > MIN_JACOBIAN_THRESHOLD< / h2 >
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< td class = "memname" > double gridfire::MIN_JACOBIAN_THRESHOLD = 1e-24< / td >
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< p > Minimum value for Jacobian matrix entries. < / p >
< p > Jacobian matrix entries with absolute values below this threshold are treated as zero to maintain sparsity and improve performance. < / p >
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