2025-07-24 11:10:45 -04:00
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
< html xmlns = "http://www.w3.org/1999/xhtml" lang = "en-US" >
< head >
< meta http-equiv = "Content-Type" content = "text/xhtml;charset=UTF-8" / >
< meta http-equiv = "X-UA-Compatible" content = "IE=11" / >
< meta name = "generator" content = "Doxygen 1.13.2" / >
< meta name = "viewport" content = "width=device-width, initial-scale=1" / >
< title > GridFire: Member List< / title >
< link href = "tabs.css" rel = "stylesheet" type = "text/css" / >
< script type = "text/javascript" src = "jquery.js" > < / script >
< script type = "text/javascript" src = "dynsections.js" > < / script >
< script type = "text/javascript" src = "clipboard.js" > < / script >
< link href = "navtree.css" rel = "stylesheet" type = "text/css" / >
< script type = "text/javascript" src = "navtreedata.js" > < / script >
< script type = "text/javascript" src = "navtree.js" > < / script >
< script type = "text/javascript" src = "resize.js" > < / script >
< script type = "text/javascript" src = "cookie.js" > < / script >
< link href = "search/search.css" rel = "stylesheet" type = "text/css" / >
< script type = "text/javascript" src = "search/searchdata.js" > < / script >
< script type = "text/javascript" src = "search/search.js" > < / script >
< link href = "doxygen.css" rel = "stylesheet" type = "text/css" / >
< link href = "doxygen-awesome.css" rel = "stylesheet" type = "text/css" / >
< link href = "doxygen-awesome-sidebar-only.css" rel = "stylesheet" type = "text/css" / >
< / head >
< body >
< div id = "top" > <!-- do not remove this div, it is closed by doxygen! -->
< div id = "titlearea" >
< table cellspacing = "0" cellpadding = "0" >
< tbody >
< tr id = "projectrow" >
< td id = "projectalign" >
2025-11-25 14:31:59 -05:00
< div id = "projectname" > GridFire< span id = "projectnumber" >   v0.7.0_rc1< / span >
2025-07-24 11:10:45 -04:00
< / div >
< div id = "projectbrief" > General Purpose Nuclear Network< / div >
< / td >
< / tr >
< / tbody >
< / table >
< / div >
<!-- end header part -->
<!-- Generated by Doxygen 1.13.2 -->
< script type = "text/javascript" >
/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699& dn=expat.txt MIT */
var searchBox = new SearchBox("searchBox", "search/",'.html');
/* @license-end */
< / script >
< script type = "text/javascript" >
/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699& dn=expat.txt MIT */
$(function() { codefold.init(0); });
/* @license-end */
< / script >
< script type = "text/javascript" src = "menudata.js" > < / script >
< script type = "text/javascript" src = "menu.js" > < / script >
< script type = "text/javascript" >
/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699& dn=expat.txt MIT */
$(function() {
initMenu('',true,false,'search.php','Search',true);
$(function() { init_search(); });
});
/* @license-end */
< / script >
< div id = "main-nav" > < / div >
< / div > <!-- top -->
< div id = "side-nav" class = "ui-resizable side-nav-resizable" >
< div id = "nav-tree" >
< div id = "nav-tree-contents" >
< div id = "nav-sync" class = "sync" > < / div >
< / div >
< / div >
< div id = "splitbar" style = "-moz-user-select:none;"
class="ui-resizable-handle">
< / div >
< / div >
< script type = "text/javascript" >
/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699& dn=expat.txt MIT */
$(function(){initNavTree('class_py_dynamic_engine.html',''); initResizable(true); });
/* @license-end */
< / script >
< div id = "doc-content" >
<!-- window showing the filter options -->
< div id = "MSearchSelectWindow"
onmouseover="return searchBox.OnSearchSelectShow()"
onmouseout="return searchBox.OnSearchSelectHide()"
onkeydown="return searchBox.OnSearchSelectKey(event)">
< / div >
<!-- iframe showing the search results (closed by default) -->
< div id = "MSearchResultsWindow" >
< div id = "MSearchResults" >
< div class = "SRPage" >
< div id = "SRIndex" >
< div id = "SRResults" > < / div >
< div class = "SRStatus" id = "Loading" > Loading...< / div >
< div class = "SRStatus" id = "Searching" > Searching...< / div >
< div class = "SRStatus" id = "NoMatches" > No Matches< / div >
< / div >
< / div >
< / div >
< / div >
< div class = "header" >
< div class = "headertitle" > < div class = "title" > PyDynamicEngine Member List< / div > < / div >
< / div > <!-- header -->
< div class = "contents" >
< p > This is the complete list of members for < a class = "el" href = "class_py_dynamic_engine.html" > PyDynamicEngine< / a > , including all inherited members.< / p >
< table class = "directory" >
2025-11-25 14:31:59 -05:00
< tr class = "even" > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html#a6832a7898da51017a20f578e33cba729" > calculateEpsDerivatives< / a > (const fourdst::composition::CompositionAbstract & comp, double T9, double rho) const override< / td > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html" > PyDynamicEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html#a8facba88b6df6e016ce53a0ff3cff125" > calculateMolarReactionFlow< / a > (const gridfire::reaction::Reaction & reaction, const fourdst::composition::CompositionAbstract & comp, double T9, double rho) const override< / td > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html" > PyDynamicEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html#aac1f2005c0a58befc4e01627c9357924" > calculateRHSAndEnergy< / a > (const fourdst::composition::CompositionAbstract & comp, double T9, double rho) const override< / td > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html" > PyDynamicEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html#a239826d90cb5db236e68230f7ac84bcb" > collectComposition< / a > (const fourdst::composition::CompositionAbstract & comp, double T9, double rho) const override< / td > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html" > PyDynamicEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html#a298f700c647d2c3973d2a35d370c823e" > generateJacobianMatrix< / a > (const fourdst::composition::CompositionAbstract & comp, double T9, double rho) const override< / td > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html" > PyDynamicEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html#a2b1c054b250abccc2af9a7275c68df4a" > generateJacobianMatrix< / a > (const fourdst::composition::CompositionAbstract & comp, double T9, double rho, const std::vector< fourdst::atomic::Species > & activeSpecies) const override< / td > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html" > PyDynamicEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html#a204643754cac3cf37c550ecd32f659fe" > generateJacobianMatrix< / a > (const fourdst::composition::CompositionAbstract & comp, double T9, double rho, const gridfire::engine::SparsityPattern & sparsityPattern) const override< / td > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html" > PyDynamicEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html#a2066649ca11a869c054079ea12d8d0e9" > generateStoichiometryMatrix< / a > () override< / td > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html" > PyDynamicEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html#a541cf022fe3253279f8f1309c10556d7" > getDepth< / a > () const override< / td > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html" > PyDynamicEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > inline< / span > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html#a1d5143640666631501cf229bc491516e" > getNetworkReactions< / a > () const override< / td > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html" > PyDynamicEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html#afc745e7ab5da5d8b3cf916044515cd7d" > getNetworkSpecies< / a > () const override< / td > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html" > PyDynamicEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html#ab4cfdca5e15957c5cef75ffa6dedeee5" > getScreeningModel< / a > () const override< / td > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html" > PyDynamicEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html#a8d34faa3d6ea804a3467979858d33535" > getSpeciesDestructionTimescales< / a > (const fourdst::composition::CompositionAbstract & comp, double T9, double rho) const override< / td > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html" > PyDynamicEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html#a95d10a7b240d543a1bc6c67ddf2dc8e0" > getSpeciesIndex< / a > (const fourdst::atomic::Species & species) const override< / td > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html" > PyDynamicEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html#a2947824dca9662e113153de5c6516609" > getSpeciesStatus< / a > (const fourdst::atomic::Species & species) const override< / td > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html" > PyDynamicEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html#a71678a567bb0cedd8a97aff9ceddd814" > getSpeciesTimescales< / a > (const fourdst::composition::CompositionAbstract & comp, double T9, double rho) const override< / td > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html" > PyDynamicEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html#a3dd5cf419f25e76e144af35df15a2067" > getStoichiometryMatrixEntry< / a > (const fourdst::atomic::Species & species, const gridfire::reaction::Reaction & reaction) const override< / td > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html" > PyDynamicEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html#a55bf19ed7534a312a36faf74753f7b14" > isStale< / a > (const gridfire::NetIn & netIn) override< / td > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html" > PyDynamicEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
2025-10-08 11:17:09 -04:00
< tr class = "even" > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html#a2246382b1c98ba69cdb419bba63a6d03" > m_species_cache< / a > < / td > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html" > PyDynamicEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > mutable< / span > < span class = "mlabel" > private< / span > < / td > < / tr >
2025-11-25 14:31:59 -05:00
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html#a61bb4b430fe740cfb2c24e5cc673e4ac" > mapNetInToMolarAbundanceVector< / a > (const gridfire::NetIn & netIn) const override< / td > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html" > PyDynamicEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html#a6118af81e45d2850f7a2517891147274" > primeEngine< / a > (const gridfire::NetIn & netIn) override< / td > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html" > PyDynamicEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html#a25e52496b36d731127603c31e9dcaa97" > rebuild< / a > (const fourdst::composition::CompositionAbstract & comp, gridfire::engine::BuildDepthType depth) override< / td > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html" > PyDynamicEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > inline< / span > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html#af469cba3be850d53f659ec173f0eb4e4" > setNetworkReactions< / a > (const gridfire::reaction::ReactionSet & reactions) override< / td > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html" > PyDynamicEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html#afa3abfd612033336a656f092721c14ac" > setScreeningModel< / a > (gridfire::screening::ScreeningType model) override< / td > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html" > PyDynamicEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "even" > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html#af8e6a8cd44f278535d7bcc9a896d6da8" > update< / a > (const gridfire::NetIn & netIn) override< / td > < td class = "entry" > < a class = "el" href = "class_py_dynamic_engine.html" > PyDynamicEngine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
< tr class = "odd" > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_engine.html#af0ea99416c28933d364a872fc6aff556" > ~Engine< / a > ()=default< / td > < td class = "entry" > < a class = "el" href = "classgridfire_1_1engine_1_1_engine.html" > gridfire::engine::Engine< / a > < / td > < td class = "entry" > < span class = "mlabel" > virtual< / span > < / td > < / tr >
2025-07-24 11:10:45 -04:00
< / table > < / div > <!-- contents -->
< / div > <!-- doc - content -->
<!-- start footer part -->
< div id = "nav-path" class = "navpath" > <!-- id is needed for treeview function! -->
< ul >
< li class = "footer" > Generated by < a href = "https://www.doxygen.org/index.html" > < img class = "footer" src = "doxygen.svg" width = "104" height = "31" alt = "doxygen" / > < / a > 1.13.2 < / li >
< / ul >
< / div >
< / body >
< / html >