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< a href = "solver_8cpp.html" > Go to the documentation of this file.< / a > < div class = "fragment" > < div class = "line" > < a id = "l00001" name = "l00001" > < / a > < span class = "lineno" > 1< / span > < span class = "preprocessor" > #include " < a class = "code" href = "solver_8h.html" > gridfire/solver/solver.h< / a > " < / span > < / div >
< div class = "line" > < a id = "l00002" name = "l00002" > < / a > < span class = "lineno" > 2< / span > < span class = "preprocessor" > #include " < a class = "code" href = "engine__graph_8h.html" > gridfire/engine/engine_graph.h< / a > " < / span > < / div >
< div class = "line" > < a id = "l00003" name = "l00003" > < / a > < span class = "lineno" > 3< / span > < span class = "preprocessor" > #include " < a class = "code" href = "network_8h.html" > gridfire/network.h< / a > " < / span > < / div >
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< div class = "line" > < a id = "l00004" name = "l00004" > < / a > < span class = "lineno" > 4< / span > < span class = "preprocessor" > #include " < a class = "code" href = "error__engine_8h.html" > gridfire/exceptions/error_engine.h< / a > " < / span > < / div >
< div class = "line" > < a id = "l00005" name = "l00005" > < / a > < span class = "lineno" > 5< / span > < / div >
< div class = "line" > < a id = "l00006" name = "l00006" > < / a > < span class = "lineno" > 6< / span > < span class = "preprocessor" > #include " fourdst/composition/atomicSpecies.h" < / span > < / div >
< div class = "line" > < a id = "l00007" name = "l00007" > < / a > < span class = "lineno" > 7< / span > < span class = "preprocessor" > #include " fourdst/composition/composition.h" < / span > < / div >
< div class = "line" > < a id = "l00008" name = "l00008" > < / a > < span class = "lineno" > 8< / span > < span class = "preprocessor" > #include " fourdst/config/config.h" < / span > < / div >
< div class = "line" > < a id = "l00009" name = "l00009" > < / a > < span class = "lineno" > 9< / span > < / div >
< div class = "line" > < a id = "l00010" name = "l00010" > < / a > < span class = "lineno" > 10< / span > < span class = "preprocessor" > #include " unsupported/Eigen/NonLinearOptimization" < / span > < / div >
< div class = "line" > < a id = "l00011" name = "l00011" > < / a > < span class = "lineno" > 11< / span > < / div >
< div class = "line" > < a id = "l00012" name = "l00012" > < / a > < span class = "lineno" > 12< / span > < span class = "preprocessor" > #include < boost/numeric/odeint.hpp> < / span > < / div >
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< div class = "line" > < a id = "l00013" name = "l00013" > < / a > < span class = "lineno" > 13< / span > < / div >
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< div class = "line" > < a id = "l00014" name = "l00014" > < / a > < span class = "lineno" > 14< / span > < span class = "preprocessor" > #include < vector> < / span > < / div >
< div class = "line" > < a id = "l00015" name = "l00015" > < / a > < span class = "lineno" > 15< / span > < span class = "preprocessor" > #include < string> < / span > < / div >
< div class = "line" > < a id = "l00016" name = "l00016" > < / a > < span class = "lineno" > 16< / span > < span class = "preprocessor" > #include < stdexcept> < / span > < / div >
< div class = "line" > < a id = "l00017" name = "l00017" > < / a > < span class = "lineno" > 17< / span > < span class = "preprocessor" > #include < iomanip> < / span > < / div >
< div class = "line" > < a id = "l00018" name = "l00018" > < / a > < span class = "lineno" > 18< / span > < / div >
< div class = "line" > < a id = "l00019" name = "l00019" > < / a > < span class = "lineno" > 19< / span > < span class = "preprocessor" > #include " quill/LogMacros.h" < / span > < / div >
< div class = "line" > < a id = "l00020" name = "l00020" > < / a > < span class = "lineno" > 20< / span > < / div >
< div class = "line" > < a id = "l00021" name = "l00021" > < / a > < span class = "lineno" > 21< / span > < span class = "keyword" > namespace < / span > < a class = "code hl_namespace" href = "namespacegridfire_1_1solver.html" > gridfire::solver< / a > {< / div >
< div class = "foldopen" id = "foldopen00022" data-start = "{" data-end = "}" >
< div class = "line" > < a id = "l00022" name = "l00022" > < / a > < span class = "lineno" > < a class = "line" href = "classgridfire_1_1solver_1_1_direct_network_solver.html#a0e8a4b8ef656e0b084d11bea982e412a" > 22< / a > < / span > < a class = "code hl_struct" href = "structgridfire_1_1_net_out.html" > NetOut< / a > < a class = "code hl_function" href = "classgridfire_1_1solver_1_1_direct_network_solver.html#a0e8a4b8ef656e0b084d11bea982e412a" > DirectNetworkSolver::evaluate< / a > (< span class = "keyword" > const< / span > < a class = "code hl_struct" href = "structgridfire_1_1_net_in.html" > NetIn< / a > & netIn) {< / div >
< div class = "line" > < a id = "l00023" name = "l00023" > < / a > < span class = "lineno" > 23< / span > < span class = "keyword" > namespace < / span > ublas = boost::numeric::ublas;< / div >
< div class = "line" > < a id = "l00024" name = "l00024" > < / a > < span class = "lineno" > 24< / span > < span class = "keyword" > namespace < / span > odeint = boost::numeric::odeint;< / div >
< div class = "line" > < a id = "l00025" name = "l00025" > < / a > < span class = "lineno" > 25< / span > < span class = "keyword" > using < / span > fourdst::composition::Composition;< / div >
< div class = "line" > < a id = "l00026" name = "l00026" > < / a > < span class = "lineno" > 26< / span > < / div >
< div class = "line" > < a id = "l00027" name = "l00027" > < / a > < span class = "lineno" > 27< / span > < / div >
< div class = "line" > < a id = "l00028" name = "l00028" > < / a > < span class = "lineno" > 28< / span > < span class = "keyword" > const< / span > < span class = "keywordtype" > double< / span > T9 = netIn.< a class = "code hl_variable" href = "structgridfire_1_1_net_in.html#a5be0f5195a5cd1dd177b9fc5ab83a7be" > temperature< / a > / 1e9; < span class = "comment" > // Convert temperature from Kelvin to T9 (T9 = T / 1e9)< / span > < / div >
< div class = "line" > < a id = "l00029" name = "l00029" > < / a > < span class = "lineno" > 29< / span > < / div >
< div class = "line" > < a id = "l00030" name = "l00030" > < / a > < span class = "lineno" > 30< / span > < span class = "keyword" > const< / span > < span class = "keyword" > auto< / span > absTol = < a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_direct_network_solver.html#a2cc12e737a753a42b72a45be3fbfa8ab" > m_config< / a > .get< < span class = "keywordtype" > double< / span > > (< span class = "stringliteral" > " gridfire:solver:DirectNetworkSolver:absTol" < / span > , 1.0e-8);< / div >
< div class = "line" > < a id = "l00031" name = "l00031" > < / a > < span class = "lineno" > 31< / span > < span class = "keyword" > const< / span > < span class = "keyword" > auto< / span > relTol = < a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_direct_network_solver.html#a2cc12e737a753a42b72a45be3fbfa8ab" > m_config< / a > .get< < span class = "keywordtype" > double< / span > > (< span class = "stringliteral" > " gridfire:solver:DirectNetworkSolver:relTol" < / span > , 1.0e-8);< / div >
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< div class = "line" > < a id = "l00032" name = "l00032" > < / a > < span class = "lineno" > 32< / span > < / div >
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< div class = "line" > < a id = "l00033" name = "l00033" > < / a > < span class = "lineno" > 33< / span > Composition equilibratedComposition = < a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8" > m_engine< / a > .update(netIn);< / div >
< div class = "line" > < a id = "l00034" name = "l00034" > < / a > < span class = "lineno" > 34< / span > < span class = "keywordtype" > size_t< / span > numSpecies = < a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8" > m_engine< / a > .getNetworkSpecies().size();< / div >
< div class = "line" > < a id = "l00035" name = "l00035" > < / a > < span class = "lineno" > 35< / span > ublas::vector< double> Y(numSpecies + 1);< / div >
< div class = "line" > < a id = "l00036" name = "l00036" > < / a > < span class = "lineno" > 36< / span > < / div >
< div class = "line" > < a id = "l00037" name = "l00037" > < / a > < span class = "lineno" > 37< / span > < a class = "code hl_struct" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html" > RHSManager< / a > manager(< a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8" > m_engine< / a > , T9, netIn.< a class = "code hl_variable" href = "structgridfire_1_1_net_in.html#a06f0dff9f8927b7cf2da3004c8fa1577" > density< / a > );< / div >
< div class = "line" > < a id = "l00038" name = "l00038" > < / a > < span class = "lineno" > 38< / span > < a class = "code hl_struct" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html" > JacobianFunctor< / a > jacobianFunctor(< a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8" > m_engine< / a > , T9, netIn.< a class = "code hl_variable" href = "structgridfire_1_1_net_in.html#a06f0dff9f8927b7cf2da3004c8fa1577" > density< / a > );< / div >
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< div class = "line" > < a id = "l00039" name = "l00039" > < / a > < span class = "lineno" > 39< / span > < / div >
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< div class = "line" > < a id = "l00040" name = "l00040" > < / a > < span class = "lineno" > 40< / span > < span class = "keyword" > auto< / span > populateY = [& ](< span class = "keyword" > const< / span > Composition& comp) {< / div >
< div class = "line" > < a id = "l00041" name = "l00041" > < / a > < span class = "lineno" > 41< / span > < span class = "keyword" > const< / span > < span class = "keywordtype" > size_t< / span > numSpeciesInternal = < a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8" > m_engine< / a > .getNetworkSpecies().size();< / div >
< div class = "line" > < a id = "l00042" name = "l00042" > < / a > < span class = "lineno" > 42< / span > Y.resize(numSpeciesInternal + 1);< / div >
< div class = "line" > < a id = "l00043" name = "l00043" > < / a > < span class = "lineno" > 43< / span > < span class = "keywordflow" > for< / span > (< span class = "keywordtype" > size_t< / span > i = 0; i < numSpeciesInternal; i++) {< / div >
< div class = "line" > < a id = "l00044" name = "l00044" > < / a > < span class = "lineno" > 44< / span > < span class = "keyword" > const< / span > < span class = "keyword" > auto< / span > & species = < a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8" > m_engine< / a > .getNetworkSpecies()[i];< / div >
< div class = "line" > < a id = "l00045" name = "l00045" > < / a > < span class = "lineno" > 45< / span > < span class = "keywordflow" > if< / span > (!comp.contains(species)) {< / div >
< div class = "line" > < a id = "l00046" name = "l00046" > < / a > < span class = "lineno" > 46< / span > < span class = "keywordtype" > double< / span > lim = std::numeric_limits< double> ::min();< / div >
< div class = "line" > < a id = "l00047" name = "l00047" > < / a > < span class = "lineno" > 47< / span > LOG_DEBUG(< a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_direct_network_solver.html#a093aa89fd23c2fe03266e286871c7079" > m_logger< / a > , < span class = "stringliteral" > " Species ' {}' not found in composition. Setting abundance to {:0.3E}." < / span > , species.name(), lim);< / div >
< div class = "line" > < a id = "l00048" name = "l00048" > < / a > < span class = "lineno" > 48< / span > Y(i) = lim; < span class = "comment" > // Species not in the composition, set to zero< / span > < / div >
< div class = "line" > < a id = "l00049" name = "l00049" > < / a > < span class = "lineno" > 49< / span > } < span class = "keywordflow" > else< / span > {< / div >
< div class = "line" > < a id = "l00050" name = "l00050" > < / a > < span class = "lineno" > 50< / span > Y(i) = comp.getMolarAbundance(species);< / div >
< div class = "line" > < a id = "l00051" name = "l00051" > < / a > < span class = "lineno" > 51< / span > }< / div >
< div class = "line" > < a id = "l00052" name = "l00052" > < / a > < span class = "lineno" > 52< / span > }< / div >
< div class = "line" > < a id = "l00053" name = "l00053" > < / a > < span class = "lineno" > 53< / span > < / div >
< div class = "line" > < a id = "l00054" name = "l00054" > < / a > < span class = "lineno" > 54< / span > < span class = "comment" > // TODO: a good starting point to make the temperature, density, and energy self consistent would be to turn this into an accumulator< / span > < / div >
< div class = "line" > < a id = "l00055" name = "l00055" > < / a > < span class = "lineno" > 55< / span > Y(numSpeciesInternal) = 0.0; < span class = "comment" > // Specific energy rate, initialized to zero< / span > < / div >
< div class = "line" > < a id = "l00056" name = "l00056" > < / a > < span class = "lineno" > 56< / span > };< / div >
< div class = "line" > < a id = "l00057" name = "l00057" > < / a > < span class = "lineno" > 57< / span > < / div >
< div class = "line" > < a id = "l00058" name = "l00058" > < / a > < span class = "lineno" > 58< / span > < span class = "comment" > // This is a quick debug that can be turned on. For solar code input parameters (T~1.5e7K, ρ < / span > < / div >
< div class = "line" > < a id = "l00059" name = "l00059" > < / a > < span class = "lineno" > 59< / span > < span class = "comment" > // std::cout < < " D/H: " < < equilibratedComposition.getMolarAbundance(" H-2" ) / equilibratedComposition.getMolarAbundance(" H-1" ) < < std::endl;< / span > < / div >
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< div class = "line" > < a id = "l00060" name = "l00060" > < / a > < span class = "lineno" > 60< / span > < / div >
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< div class = "line" > < a id = "l00061" name = "l00061" > < / a > < span class = "lineno" > 61< / span > populateY(equilibratedComposition);< / div >
< div class = "line" > < a id = "l00062" name = "l00062" > < / a > < span class = "lineno" > 62< / span > < span class = "keyword" > const< / span > < span class = "keyword" > auto< / span > stepper = odeint::make_controlled< odeint::rosenbrock4< double> > (absTol, relTol);< / div >
< div class = "line" > < a id = "l00063" name = "l00063" > < / a > < span class = "lineno" > 63< / span > < / div >
< div class = "line" > < a id = "l00064" name = "l00064" > < / a > < span class = "lineno" > 64< / span > < span class = "keywordtype" > double< / span > current_time = 0.0;< / div >
< div class = "line" > < a id = "l00065" name = "l00065" > < / a > < span class = "lineno" > 65< / span > < span class = "keywordtype" > double< / span > current_initial_timestep = netIn.< a class = "code hl_variable" href = "structgridfire_1_1_net_in.html#a4e556f7bb18f46654b3445476734076a" > dt0< / a > ;< / div >
< div class = "line" > < a id = "l00066" name = "l00066" > < / a > < span class = "lineno" > 66< / span > < span class = "keywordtype" > double< / span > accumulated_energy = 0.0;< / div >
< div class = "line" > < a id = "l00067" name = "l00067" > < / a > < span class = "lineno" > 67< / span > < span class = "comment" > // size_t total_update_stages_triggered = 0;< / span > < / div >
< div class = "line" > < a id = "l00068" name = "l00068" > < / a > < span class = "lineno" > 68< / span > < / div >
< div class = "line" > < a id = "l00069" name = "l00069" > < / a > < span class = "lineno" > 69< / span > < span class = "keywordflow" > while< / span > (current_time < netIn.< a class = "code hl_variable" href = "structgridfire_1_1_net_in.html#a0a8d820cfeaa92ee31f253795c57e0d1" > tMax< / a > ) {< / div >
< div class = "line" > < a id = "l00070" name = "l00070" > < / a > < span class = "lineno" > 70< / span > < span class = "keywordflow" > try< / span > {< / div >
< div class = "line" > < a id = "l00071" name = "l00071" > < / a > < span class = "lineno" > 71< / span > odeint::integrate_adaptive(< / div >
< div class = "line" > < a id = "l00072" name = "l00072" > < / a > < span class = "lineno" > 72< / span > stepper,< / div >
< div class = "line" > < a id = "l00073" name = "l00073" > < / a > < span class = "lineno" > 73< / span > std::make_pair(manager, jacobianFunctor),< / div >
< div class = "line" > < a id = "l00074" name = "l00074" > < / a > < span class = "lineno" > 74< / span > Y,< / div >
< div class = "line" > < a id = "l00075" name = "l00075" > < / a > < span class = "lineno" > 75< / span > current_time,< / div >
< div class = "line" > < a id = "l00076" name = "l00076" > < / a > < span class = "lineno" > 76< / span > netIn.< a class = "code hl_variable" href = "structgridfire_1_1_net_in.html#a0a8d820cfeaa92ee31f253795c57e0d1" > tMax< / a > ,< / div >
< div class = "line" > < a id = "l00077" name = "l00077" > < / a > < span class = "lineno" > 77< / span > current_initial_timestep,< / div >
< div class = "line" > < a id = "l00078" name = "l00078" > < / a > < span class = "lineno" > 78< / span > [& ](< span class = "keyword" > const< / span > < span class = "keyword" > auto< / span > & state, < span class = "keywordtype" > double< / span > t) {< / div >
< div class = "line" > < a id = "l00079" name = "l00079" > < / a > < span class = "lineno" > 79< / span > current_time = t;< / div >
< div class = "line" > < a id = "l00080" name = "l00080" > < / a > < span class = "lineno" > 80< / span > manager.observe(state, t);< / div >
< div class = "line" > < a id = "l00081" name = "l00081" > < / a > < span class = "lineno" > 81< / span > }< / div >
< div class = "line" > < a id = "l00082" name = "l00082" > < / a > < span class = "lineno" > 82< / span > );< / div >
< div class = "line" > < a id = "l00083" name = "l00083" > < / a > < span class = "lineno" > 83< / span > current_time = netIn.< a class = "code hl_variable" href = "structgridfire_1_1_net_in.html#a0a8d820cfeaa92ee31f253795c57e0d1" > tMax< / a > ;< / div >
< div class = "line" > < a id = "l00084" name = "l00084" > < / a > < span class = "lineno" > 84< / span > } < span class = "keywordflow" > catch< / span > (< span class = "keyword" > const< / span > < a class = "code hl_class" href = "classgridfire_1_1exceptions_1_1_stale_engine_trigger.html" > exceptions::StaleEngineTrigger< / a > & e) {< / div >
< div class = "line" > < a id = "l00085" name = "l00085" > < / a > < span class = "lineno" > 85< / span > LOG_INFO(< a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_direct_network_solver.html#a093aa89fd23c2fe03266e286871c7079" > m_logger< / a > , < span class = "stringliteral" > " Catching StaleEngineTrigger at t = {:0.3E} with T9 = {:0.3E}, rho = {:0.3E}. Triggering update stage (last stage took {} steps)." < / span > , current_time, T9, netIn.< a class = "code hl_variable" href = "structgridfire_1_1_net_in.html#a06f0dff9f8927b7cf2da3004c8fa1577" > density< / a > , e.< a class = "code hl_function" href = "classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a0b7c627c3e69390808bef352b3875408" > totalSteps< / a > ());< / div >
< div class = "line" > < a id = "l00086" name = "l00086" > < / a > < span class = "lineno" > 86< / span > < a class = "code hl_struct" href = "structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html" > exceptions::StaleEngineTrigger::state< / a > staleState = e.< a class = "code hl_function" href = "classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a06eb9eb03750038c193c23c7f53668f5" > getState< / a > ();< / div >
< div class = "line" > < a id = "l00087" name = "l00087" > < / a > < span class = "lineno" > 87< / span > accumulated_energy += e.< a class = "code hl_function" href = "classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#aeebfb529118f8dfcaf1422ae1768f2bf" > energy< / a > (); < span class = "comment" > // Add the specific energy rate to the accumulated energy< / span > < / div >
< div class = "line" > < a id = "l00088" name = "l00088" > < / a > < span class = "lineno" > 88< / span > < span class = "comment" > // total_update_stages_triggered++;< / span > < / div >
< div class = "line" > < a id = "l00089" name = "l00089" > < / a > < span class = "lineno" > 89< / span > < / div >
< div class = "line" > < a id = "l00090" name = "l00090" > < / a > < span class = "lineno" > 90< / span > Composition temp_comp;< / div >
< div class = "line" > < a id = "l00091" name = "l00091" > < / a > < span class = "lineno" > 91< / span > std::vector< double> mass_fractions;< / div >
< div class = "line" > < a id = "l00092" name = "l00092" > < / a > < span class = "lineno" > 92< / span > < span class = "keywordtype" > size_t< / span > num_species_at_stop = e.< a class = "code hl_function" href = "classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a44ac2f7510ecf86cd5b556a842eee30c" > numSpecies< / a > ();< / div >
< div class = "line" > < a id = "l00093" name = "l00093" > < / a > < span class = "lineno" > 93< / span > < / div >
< div class = "line" > < a id = "l00094" name = "l00094" > < / a > < span class = "lineno" > 94< / span > < span class = "keywordflow" > if< / span > (num_species_at_stop != < a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8" > m_engine< / a > .getNetworkSpecies().size()) {< / div >
< div class = "line" > < a id = "l00095" name = "l00095" > < / a > < span class = "lineno" > 95< / span > < span class = "keywordflow" > throw< / span > std::runtime_error(< / div >
< div class = "line" > < a id = "l00096" name = "l00096" > < / a > < span class = "lineno" > 96< / span > < span class = "stringliteral" > " StaleEngineError state has a different number of species than the engine. This should not happen." < / span > < / div >
< div class = "line" > < a id = "l00097" name = "l00097" > < / a > < span class = "lineno" > 97< / span > );< / div >
< div class = "line" > < a id = "l00098" name = "l00098" > < / a > < span class = "lineno" > 98< / span > }< / div >
< div class = "line" > < a id = "l00099" name = "l00099" > < / a > < span class = "lineno" > 99< / span > mass_fractions.reserve(num_species_at_stop);< / div >
< div class = "line" > < a id = "l00100" name = "l00100" > < / a > < span class = "lineno" > 100< / span > < / div >
< div class = "line" > < a id = "l00101" name = "l00101" > < / a > < span class = "lineno" > 101< / span > < span class = "keywordflow" > for< / span > (< span class = "keywordtype" > size_t< / span > i = 0; i < num_species_at_stop; ++i) {< / div >
< div class = "line" > < a id = "l00102" name = "l00102" > < / a > < span class = "lineno" > 102< / span > < span class = "keyword" > const< / span > < span class = "keyword" > auto< / span > & species = < a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8" > m_engine< / a > .getNetworkSpecies()[i];< / div >
< div class = "line" > < a id = "l00103" name = "l00103" > < / a > < span class = "lineno" > 103< / span > temp_comp.registerSpecies(species);< / div >
< div class = "line" > < a id = "l00104" name = "l00104" > < / a > < span class = "lineno" > 104< / span > mass_fractions.push_back(e.< a class = "code hl_function" href = "classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a3183a0030b14253eb49d8304fb6665ea" > getMolarAbundance< / a > (i) * species.mass()); < span class = "comment" > // Convert from molar abundance to mass fraction< / span > < / div >
< div class = "line" > < a id = "l00105" name = "l00105" > < / a > < span class = "lineno" > 105< / span > }< / div >
< div class = "line" > < a id = "l00106" name = "l00106" > < / a > < span class = "lineno" > 106< / span > temp_comp.setMassFraction(< a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8" > m_engine< / a > .getNetworkSpecies(), mass_fractions);< / div >
< div class = "line" > < a id = "l00107" name = "l00107" > < / a > < span class = "lineno" > 107< / span > temp_comp.finalize(< span class = "keyword" > true< / span > );< / div >
< div class = "line" > < a id = "l00108" name = "l00108" > < / a > < span class = "lineno" > 108< / span > < / div >
< div class = "line" > < a id = "l00109" name = "l00109" > < / a > < span class = "lineno" > 109< / span > < a class = "code hl_struct" href = "structgridfire_1_1_net_in.html" > NetIn< / a > netInTemp = netIn;< / div >
< div class = "line" > < a id = "l00110" name = "l00110" > < / a > < span class = "lineno" > 110< / span > netInTemp.< a class = "code hl_variable" href = "structgridfire_1_1_net_in.html#a5be0f5195a5cd1dd177b9fc5ab83a7be" > temperature< / a > = e.< a class = "code hl_function" href = "classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a2f5925b67562cebd08568fce76c739e9" > temperature< / a > ();< / div >
< div class = "line" > < a id = "l00111" name = "l00111" > < / a > < span class = "lineno" > 111< / span > netInTemp.< a class = "code hl_variable" href = "structgridfire_1_1_net_in.html#a06f0dff9f8927b7cf2da3004c8fa1577" > density< / a > = e.< a class = "code hl_function" href = "classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#ae8156ed7e659cb629da24a5b6734e2dc" > density< / a > ();< / div >
< div class = "line" > < a id = "l00112" name = "l00112" > < / a > < span class = "lineno" > 112< / span > netInTemp.< a class = "code hl_variable" href = "structgridfire_1_1_net_in.html#a13058f4929e72c1187abbebcddb8aed1" > composition< / a > = std::move(temp_comp);< / div >
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< div class = "line" > < a id = "l00113" name = "l00113" > < / a > < span class = "lineno" > 113< / span > < / div >
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< div class = "line" > < a id = "l00114" name = "l00114" > < / a > < span class = "lineno" > 114< / span > Composition currentComposition = < a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8" > m_engine< / a > .update(netInTemp);< / div >
< div class = "line" > < a id = "l00115" name = "l00115" > < / a > < span class = "lineno" > 115< / span > populateY(currentComposition);< / div >
< div class = "line" > < a id = "l00116" name = "l00116" > < / a > < span class = "lineno" > 116< / span > Y(Y.size() - 1) = e.< a class = "code hl_function" href = "classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#aeebfb529118f8dfcaf1422ae1768f2bf" > energy< / a > (); < span class = "comment" > // Set the specific energy rate from the stale state< / span > < / div >
< div class = "line" > < a id = "l00117" name = "l00117" > < / a > < span class = "lineno" > 117< / span > numSpecies = < a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8" > m_engine< / a > .getNetworkSpecies().size();< / div >
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< div class = "line" > < a id = "l00118" name = "l00118" > < / a > < span class = "lineno" > 118< / span > < / div >
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< div class = "line" > < a id = "l00119" name = "l00119" > < / a > < span class = "lineno" > 119< / span > < span class = "comment" > // current_initial_timestep = 0.001 * manager.m_last_step_time; // set the new timestep to the last successful timestep before repartitioning< / span > < / div >
< div class = "line" > < a id = "l00120" name = "l00120" > < / a > < span class = "lineno" > 120< / span > }< / div >
< div class = "line" > < a id = "l00121" name = "l00121" > < / a > < span class = "lineno" > 121< / span > }< / div >
< div class = "line" > < a id = "l00122" name = "l00122" > < / a > < span class = "lineno" > 122< / span > < / div >
< div class = "line" > < a id = "l00123" name = "l00123" > < / a > < span class = "lineno" > 123< / span > accumulated_energy += Y(Y.size() - 1); < span class = "comment" > // Add the specific energy rate to the accumulated energy< / span > < / div >
< div class = "line" > < a id = "l00124" name = "l00124" > < / a > < span class = "lineno" > 124< / span > < / div >
< div class = "line" > < a id = "l00125" name = "l00125" > < / a > < span class = "lineno" > 125< / span > std::vector< double> finalMassFractions(numSpecies);< / div >
< div class = "line" > < a id = "l00126" name = "l00126" > < / a > < span class = "lineno" > 126< / span > < span class = "keywordflow" > for< / span > (< span class = "keywordtype" > size_t< / span > i = 0; i < numSpecies; ++i) {< / div >
< div class = "line" > < a id = "l00127" name = "l00127" > < / a > < span class = "lineno" > 127< / span > < span class = "keyword" > const< / span > < span class = "keywordtype" > double< / span > molarMass = < a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8" > m_engine< / a > .getNetworkSpecies()[i].mass();< / div >
< div class = "line" > < a id = "l00128" name = "l00128" > < / a > < span class = "lineno" > 128< / span > finalMassFractions[i] = Y(i) * molarMass; < span class = "comment" > // Convert from molar abundance to mass fraction< / span > < / div >
< div class = "line" > < a id = "l00129" name = "l00129" > < / a > < span class = "lineno" > 129< / span > < span class = "keywordflow" > if< / span > (finalMassFractions[i] < < a class = "code hl_variable" href = "namespacegridfire.html#a96c062f94713921e5d7568ecedcdcb06" > MIN_ABUNDANCE_THRESHOLD< / a > ) {< / div >
< div class = "line" > < a id = "l00130" name = "l00130" > < / a > < span class = "lineno" > 130< / span > finalMassFractions[i] = 0.0;< / div >
< div class = "line" > < a id = "l00131" name = "l00131" > < / a > < span class = "lineno" > 131< / span > }< / div >
< div class = "line" > < a id = "l00132" name = "l00132" > < / a > < span class = "lineno" > 132< / span > }< / div >
< div class = "line" > < a id = "l00133" name = "l00133" > < / a > < span class = "lineno" > 133< / span > < / div >
< div class = "line" > < a id = "l00134" name = "l00134" > < / a > < span class = "lineno" > 134< / span > std::vector< std::string> speciesNames;< / div >
< div class = "line" > < a id = "l00135" name = "l00135" > < / a > < span class = "lineno" > 135< / span > speciesNames.reserve(numSpecies);< / div >
< div class = "line" > < a id = "l00136" name = "l00136" > < / a > < span class = "lineno" > 136< / span > < span class = "keywordflow" > for< / span > (< span class = "keyword" > const< / span > < span class = "keyword" > auto< / span > & species : < a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8" > m_engine< / a > .getNetworkSpecies()) {< / div >
< div class = "line" > < a id = "l00137" name = "l00137" > < / a > < span class = "lineno" > 137< / span > speciesNames.push_back(std::string(species.name()));< / div >
< div class = "line" > < a id = "l00138" name = "l00138" > < / a > < span class = "lineno" > 138< / span > }< / div >
< div class = "line" > < a id = "l00139" name = "l00139" > < / a > < span class = "lineno" > 139< / span > < / div >
< div class = "line" > < a id = "l00140" name = "l00140" > < / a > < span class = "lineno" > 140< / span > Composition outputComposition(speciesNames);< / div >
< div class = "line" > < a id = "l00141" name = "l00141" > < / a > < span class = "lineno" > 141< / span > outputComposition.setMassFraction(speciesNames, finalMassFractions);< / div >
< div class = "line" > < a id = "l00142" name = "l00142" > < / a > < span class = "lineno" > 142< / span > outputComposition.finalize(< span class = "keyword" > true< / span > );< / div >
< div class = "line" > < a id = "l00143" name = "l00143" > < / a > < span class = "lineno" > 143< / span > < / div >
< div class = "line" > < a id = "l00144" name = "l00144" > < / a > < span class = "lineno" > 144< / span > < a class = "code hl_struct" href = "structgridfire_1_1_net_out.html" > NetOut< / a > netOut;< / div >
< div class = "line" > < a id = "l00145" name = "l00145" > < / a > < span class = "lineno" > 145< / span > netOut.< a class = "code hl_variable" href = "structgridfire_1_1_net_out.html#a073529511ae0e52f868b47cce0e8ac0a" > composition< / a > = std::move(outputComposition);< / div >
< div class = "line" > < a id = "l00146" name = "l00146" > < / a > < span class = "lineno" > 146< / span > netOut.< a class = "code hl_variable" href = "structgridfire_1_1_net_out.html#a43d5a861708992c949f616aa2a035ec6" > energy< / a > = accumulated_energy; < span class = "comment" > // Specific energy rate< / span > < / div >
< div class = "line" > < a id = "l00147" name = "l00147" > < / a > < span class = "lineno" > 147< / span > netOut.< a class = "code hl_variable" href = "structgridfire_1_1_net_out.html#a51c16703132cf739ec2fd89eae7badd6" > num_steps< / a > = manager.< a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#ad9a07ff5cbe42a9455561903a0ae1708" > m_num_steps< / a > ;< / div >
< div class = "line" > < a id = "l00148" name = "l00148" > < / a > < span class = "lineno" > 148< / span > < / div >
< div class = "line" > < a id = "l00149" name = "l00149" > < / a > < span class = "lineno" > 149< / span > < span class = "keywordflow" > return< / span > netOut;< / div >
< div class = "line" > < a id = "l00150" name = "l00150" > < / a > < span class = "lineno" > 150< / span > }< / div >
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< / div >
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< div class = "line" > < a id = "l00151" name = "l00151" > < / a > < span class = "lineno" > 151< / span > < / div >
< div class = "foldopen" id = "foldopen00152" data-start = "{" data-end = "}" >
< div class = "line" > < a id = "l00152" name = "l00152" > < / a > < span class = "lineno" > < a class = "line" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#aec8c0a0b2fbb71cebb40c263f64385b3" > 152< / a > < / span > < span class = "keywordtype" > void< / span > < a class = "code hl_function" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#aec8c0a0b2fbb71cebb40c263f64385b3" > DirectNetworkSolver::RHSManager::operator()< / a > (< / div >
< div class = "line" > < a id = "l00153" name = "l00153" > < / a > < span class = "lineno" > 153< / span > < span class = "keyword" > const< / span > boost::numeric::ublas::vector< double> & Y,< / div >
< div class = "line" > < a id = "l00154" name = "l00154" > < / a > < span class = "lineno" > 154< / span > boost::numeric::ublas::vector< double> & dYdt,< / div >
< div class = "line" > < a id = "l00155" name = "l00155" > < / a > < span class = "lineno" > 155< / span > < span class = "keyword" > const< / span > < span class = "keywordtype" > double< / span > t< / div >
< div class = "line" > < a id = "l00156" name = "l00156" > < / a > < span class = "lineno" > 156< / span > )< span class = "keyword" > const < / span > {< / div >
< div class = "line" > < a id = "l00157" name = "l00157" > < / a > < span class = "lineno" > 157< / span > < span class = "keyword" > const< / span > < span class = "keywordtype" > size_t< / span > numSpecies = < a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a035962dfdfc13d255def98befefcccd9" > m_engine< / a > .getNetworkSpecies().size();< / div >
< div class = "line" > < a id = "l00158" name = "l00158" > < / a > < span class = "lineno" > 158< / span > < span class = "keywordflow" > if< / span > (t != < a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a17b83f2478395c934c4ec2c964e9d35e" > m_cached_time< / a > || !< a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#acfecb0ebb0429f112d503771764f27ec" > m_cached_result< / a > .has_value() || < a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#acfecb0ebb0429f112d503771764f27ec" > m_cached_result< / a > .value().dydt.size() != numSpecies + 1) {< / div >
< div class = "line" > < a id = "l00159" name = "l00159" > < / a > < span class = "lineno" > 159< / span > < a class = "code hl_function" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a595aa16333693ee2bbcac35aa85a1c2a" > compute_and_cache< / a > (Y, t);< / div >
< div class = "line" > < a id = "l00160" name = "l00160" > < / a > < span class = "lineno" > 160< / span > }< / div >
< div class = "line" > < a id = "l00161" name = "l00161" > < / a > < span class = "lineno" > 161< / span > < span class = "keyword" > const< / span > < span class = "keyword" > auto< / span > & [dydt, nuclearEnergyGenerationRate] = < a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#acfecb0ebb0429f112d503771764f27ec" > m_cached_result< / a > .value();< / div >
< div class = "line" > < a id = "l00162" name = "l00162" > < / a > < span class = "lineno" > 162< / span > dYdt.resize(numSpecies + 1);< / div >
< div class = "line" > < a id = "l00163" name = "l00163" > < / a > < span class = "lineno" > 163< / span > std::ranges::copy(dydt, dYdt.begin());< / div >
< div class = "line" > < a id = "l00164" name = "l00164" > < / a > < span class = "lineno" > 164< / span > dYdt(numSpecies) = nuclearEnergyGenerationRate; < span class = "comment" > // Set the last element to the specific energy rate< / span > < / div >
< div class = "line" > < a id = "l00165" name = "l00165" > < / a > < span class = "lineno" > 165< / span > }< / div >
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< / div >
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< div class = "line" > < a id = "l00166" name = "l00166" > < / a > < span class = "lineno" > 166< / span > < / div >
< div class = "foldopen" id = "foldopen00167" data-start = "{" data-end = "}" >
< div class = "line" > < a id = "l00167" name = "l00167" > < / a > < span class = "lineno" > < a class = "line" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a226b007bfc9960b5c0bb7b88b4f122da" > 167< / a > < / span > < span class = "keywordtype" > void< / span > < a class = "code hl_function" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a226b007bfc9960b5c0bb7b88b4f122da" > DirectNetworkSolver::RHSManager::observe< / a > (< / div >
< div class = "line" > < a id = "l00168" name = "l00168" > < / a > < span class = "lineno" > 168< / span > < span class = "keyword" > const< / span > boost::numeric::ublas::vector< double> & state,< / div >
< div class = "line" > < a id = "l00169" name = "l00169" > < / a > < span class = "lineno" > 169< / span > < span class = "keyword" > const< / span > < span class = "keywordtype" > double< / span > t< / div >
< div class = "line" > < a id = "l00170" name = "l00170" > < / a > < span class = "lineno" > 170< / span > )< span class = "keyword" > const < / span > {< / div >
< div class = "line" > < a id = "l00171" name = "l00171" > < / a > < span class = "lineno" > 171< / span > < span class = "keywordtype" > double< / span > dt = t - < a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a49268e65b89444c3caf1e69323ce545b" > m_last_observed_time< / a > ;< / div >
< div class = "line" > < a id = "l00172" name = "l00172" > < / a > < span class = "lineno" > 172< / span > < a class = "code hl_function" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a595aa16333693ee2bbcac35aa85a1c2a" > compute_and_cache< / a > (state, t);< / div >
< div class = "line" > < a id = "l00173" name = "l00173" > < / a > < span class = "lineno" > 173< / span > LOG_INFO(< / div >
< div class = "line" > < a id = "l00174" name = "l00174" > < / a > < span class = "lineno" > 174< / span > < a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a6cc605a83b5ac5ae048d1044be284ada" > m_logger< / a > ,< / div >
< div class = "line" > < a id = "l00175" name = "l00175" > < / a > < span class = "lineno" > 175< / span > < span class = "stringliteral" > " (Step {}) Observed state at t = {:0.3E} (dt = {:0.3E})" < / span > ,< / div >
< div class = "line" > < a id = "l00176" name = "l00176" > < / a > < span class = "lineno" > 176< / span > < a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#ad9a07ff5cbe42a9455561903a0ae1708" > m_num_steps< / a > ,< / div >
< div class = "line" > < a id = "l00177" name = "l00177" > < / a > < span class = "lineno" > 177< / span > t,< / div >
< div class = "line" > < a id = "l00178" name = "l00178" > < / a > < span class = "lineno" > 178< / span > dt< / div >
< div class = "line" > < a id = "l00179" name = "l00179" > < / a > < span class = "lineno" > 179< / span > );< / div >
< div class = "line" > < a id = "l00180" name = "l00180" > < / a > < span class = "lineno" > 180< / span > std::ostringstream oss;< / div >
< div class = "line" > < a id = "l00181" name = "l00181" > < / a > < span class = "lineno" > 181< / span > oss < < std::scientific < < std::setprecision(3);< / div >
< div class = "line" > < a id = "l00182" name = "l00182" > < / a > < span class = "lineno" > 182< / span > oss < < < span class = "stringliteral" > " (Step: " < / span > < < std::setw(10) < < < a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#ad9a07ff5cbe42a9455561903a0ae1708" > m_num_steps< / a > < < < span class = "stringliteral" > " ) t = " < / span > < < t < < < span class = "stringliteral" > " (dt = " < / span > < < dt < < < span class = "stringliteral" > " , eps_nuc: " < / span > < < state(state.size() - 1) < < < span class = "stringliteral" > " [erg])\n" < / span > ;< / div >
< div class = "line" > < a id = "l00183" name = "l00183" > < / a > < span class = "lineno" > 183< / span > std::cout < < oss.str();< / div >
< div class = "line" > < a id = "l00184" name = "l00184" > < / a > < span class = "lineno" > 184< / span > < a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a49268e65b89444c3caf1e69323ce545b" > m_last_observed_time< / a > = t;< / div >
< div class = "line" > < a id = "l00185" name = "l00185" > < / a > < span class = "lineno" > 185< / span > < a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a69d773a1cfe4804876dbf23de1f212c9" > m_last_step_time< / a > = dt;< / div >
< div class = "line" > < a id = "l00186" name = "l00186" > < / a > < span class = "lineno" > 186< / span > < / div >
< div class = "line" > < a id = "l00187" name = "l00187" > < / a > < span class = "lineno" > 187< / span > }< / div >
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< / div >
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< div class = "line" > < a id = "l00188" name = "l00188" > < / a > < span class = "lineno" > 188< / span > < / div >
< div class = "foldopen" id = "foldopen00189" data-start = "{" data-end = "}" >
< div class = "line" > < a id = "l00189" name = "l00189" > < / a > < span class = "lineno" > < a class = "line" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a595aa16333693ee2bbcac35aa85a1c2a" > 189< / a > < / span > < span class = "keywordtype" > void< / span > < a class = "code hl_function" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a595aa16333693ee2bbcac35aa85a1c2a" > DirectNetworkSolver::RHSManager::compute_and_cache< / a > (< / div >
< div class = "line" > < a id = "l00190" name = "l00190" > < / a > < span class = "lineno" > 190< / span > < span class = "keyword" > const< / span > boost::numeric::ublas::vector< double> & state,< / div >
< div class = "line" > < a id = "l00191" name = "l00191" > < / a > < span class = "lineno" > 191< / span > < span class = "keywordtype" > double< / span > t< / div >
< div class = "line" > < a id = "l00192" name = "l00192" > < / a > < span class = "lineno" > 192< / span > )< span class = "keyword" > const < / span > {< / div >
< div class = "line" > < a id = "l00193" name = "l00193" > < / a > < span class = "lineno" > 193< / span > std::vector< double> y_vec(state.begin(), state.end() - 1);< / div >
< div class = "line" > < a id = "l00194" name = "l00194" > < / a > < span class = "lineno" > 194< / span > std::ranges::replace_if(< / div >
< div class = "line" > < a id = "l00195" name = "l00195" > < / a > < span class = "lineno" > 195< / span > y_vec,< / div >
< div class = "line" > < a id = "l00196" name = "l00196" > < / a > < span class = "lineno" > 196< / span > [](< span class = "keyword" > const< / span > < span class = "keywordtype" > double< / span > yi){< / div >
< div class = "line" > < a id = "l00197" name = "l00197" > < / a > < span class = "lineno" > 197< / span > < span class = "keywordflow" > return< / span > yi < 0.0;< / div >
< div class = "line" > < a id = "l00198" name = "l00198" > < / a > < span class = "lineno" > 198< / span > },< / div >
< div class = "line" > < a id = "l00199" name = "l00199" > < / a > < span class = "lineno" > 199< / span > 0.0 < span class = "comment" > // Avoid negative abundances< / span > < / div >
< div class = "line" > < a id = "l00200" name = "l00200" > < / a > < span class = "lineno" > 200< / span > );< / div >
< div class = "line" > < a id = "l00201" name = "l00201" > < / a > < span class = "lineno" > 201< / span > < / div >
< div class = "line" > < a id = "l00202" name = "l00202" > < / a > < span class = "lineno" > 202< / span > < span class = "keyword" > const< / span > < span class = "keyword" > auto< / span > result = < a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a035962dfdfc13d255def98befefcccd9" > m_engine< / a > .calculateRHSAndEnergy(y_vec, < a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a46e39ab9f9fd2f3822c72712173d7aef" > m_T9< / a > , < a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#aa5d0316fa2fd7d817cc77303776ab446" > m_rho< / a > );< / div >
< div class = "line" > < a id = "l00203" name = "l00203" > < / a > < span class = "lineno" > 203< / span > < span class = "keywordflow" > if< / span > (!result) {< / div >
< div class = "line" > < a id = "l00204" name = "l00204" > < / a > < span class = "lineno" > 204< / span > LOG_INFO(< a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a6cc605a83b5ac5ae048d1044be284ada" > m_logger< / a > ,< / div >
< div class = "line" > < a id = "l00205" name = "l00205" > < / a > < span class = "lineno" > 205< / span > < span class = "stringliteral" > " Triggering update stage due to stale engine detected at t = {:0.3E} with T9 = {:0.3E}, rho = {:0.3E}, y_vec (size: {})" < / span > ,< / div >
< div class = "line" > < a id = "l00206" name = "l00206" > < / a > < span class = "lineno" > 206< / span > t, < a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a46e39ab9f9fd2f3822c72712173d7aef" > m_T9< / a > , < a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#aa5d0316fa2fd7d817cc77303776ab446" > m_rho< / a > , y_vec.size());< / div >
< div class = "line" > < a id = "l00207" name = "l00207" > < / a > < span class = "lineno" > 207< / span > < span class = "keywordflow" > throw< / span > < a class = "code hl_class" href = "classgridfire_1_1exceptions_1_1_stale_engine_trigger.html" > exceptions::StaleEngineTrigger< / a > ({< a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a46e39ab9f9fd2f3822c72712173d7aef" > m_T9< / a > , < a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#aa5d0316fa2fd7d817cc77303776ab446" > m_rho< / a > , y_vec, t, < a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#ad9a07ff5cbe42a9455561903a0ae1708" > m_num_steps< / a > , state(state.size() - 1)});< / div >
< div class = "line" > < a id = "l00208" name = "l00208" > < / a > < span class = "lineno" > 208< / span > }< / div >
< div class = "line" > < a id = "l00209" name = "l00209" > < / a > < span class = "lineno" > 209< / span > < a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#acfecb0ebb0429f112d503771764f27ec" > m_cached_result< / a > = result.value();< / div >
< div class = "line" > < a id = "l00210" name = "l00210" > < / a > < span class = "lineno" > 210< / span > < a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a17b83f2478395c934c4ec2c964e9d35e" > m_cached_time< / a > = t;< / div >
< div class = "line" > < a id = "l00211" name = "l00211" > < / a > < span class = "lineno" > 211< / span > < / div >
< div class = "line" > < a id = "l00212" name = "l00212" > < / a > < span class = "lineno" > 212< / span > < a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#ad9a07ff5cbe42a9455561903a0ae1708" > m_num_steps< / a > ++;< / div >
< div class = "line" > < a id = "l00213" name = "l00213" > < / a > < span class = "lineno" > 213< / span > }< / div >
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< / div >
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< div class = "line" > < a id = "l00214" name = "l00214" > < / a > < span class = "lineno" > 214< / span > < / div >
< div class = "foldopen" id = "foldopen00215" data-start = "{" data-end = "}" >
< div class = "line" > < a id = "l00215" name = "l00215" > < / a > < span class = "lineno" > < a class = "line" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#ad4fc0b406218aa2f567f5c61a4eda3c9" > 215< / a > < / span > < span class = "keywordtype" > void< / span > < a class = "code hl_function" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#ad4fc0b406218aa2f567f5c61a4eda3c9" > DirectNetworkSolver::JacobianFunctor::operator()< / a > (< / div >
< div class = "line" > < a id = "l00216" name = "l00216" > < / a > < span class = "lineno" > 216< / span > < span class = "keyword" > const< / span > boost::numeric::ublas::vector< double> & Y,< / div >
< div class = "line" > < a id = "l00217" name = "l00217" > < / a > < span class = "lineno" > 217< / span > boost::numeric::ublas::matrix< double> & J,< / div >
< div class = "line" > < a id = "l00218" name = "l00218" > < / a > < span class = "lineno" > 218< / span > < span class = "keywordtype" > double< / span > t,< / div >
< div class = "line" > < a id = "l00219" name = "l00219" > < / a > < span class = "lineno" > 219< / span > boost::numeric::ublas::vector< double> & dfdt< / div >
< div class = "line" > < a id = "l00220" name = "l00220" > < / a > < span class = "lineno" > 220< / span > )< span class = "keyword" > const < / span > {< / div >
< div class = "line" > < a id = "l00221" name = "l00221" > < / a > < span class = "lineno" > 221< / span > < span class = "keywordtype" > size_t< / span > numSpecies = < a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a56f8b2b222fb2a7dac190ead0babfdd0" > m_engine< / a > .getNetworkSpecies().size();< / div >
< div class = "line" > < a id = "l00222" name = "l00222" > < / a > < span class = "lineno" > 222< / span > J.resize(numSpecies+1, numSpecies+1);< / div >
< div class = "line" > < a id = "l00223" name = "l00223" > < / a > < span class = "lineno" > 223< / span > J.clear();< / div >
< div class = "line" > < a id = "l00224" name = "l00224" > < / a > < span class = "lineno" > 224< / span > < span class = "keywordflow" > for< / span > (< span class = "keywordtype" > size_t< / span > i = 0; i < numSpecies; ++i) {< / div >
< div class = "line" > < a id = "l00225" name = "l00225" > < / a > < span class = "lineno" > 225< / span > < span class = "keywordflow" > for< / span > (< span class = "keywordtype" > size_t< / span > j = 0; j < numSpecies; ++j) {< / div >
< div class = "line" > < a id = "l00226" name = "l00226" > < / a > < span class = "lineno" > 226< / span > J(i, j) = < a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a56f8b2b222fb2a7dac190ead0babfdd0" > m_engine< / a > .getJacobianMatrixEntry(i, j);< / div >
< div class = "line" > < a id = "l00227" name = "l00227" > < / a > < span class = "lineno" > 227< / span > }< / div >
< div class = "line" > < a id = "l00228" name = "l00228" > < / a > < span class = "lineno" > 228< / span > }< / div >
< div class = "line" > < a id = "l00229" name = "l00229" > < / a > < span class = "lineno" > 229< / span > }< / div >
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< / div >
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< div class = "line" > < a id = "l00230" name = "l00230" > < / a > < span class = "lineno" > 230< / span > < / div >
< div class = "line" > < a id = "l00231" name = "l00231" > < / a > < span class = "lineno" > 231< / span > }< / div >
< div class = "ttc" id = "aclassgridfire_1_1exceptions_1_1_stale_engine_trigger_html" > < div class = "ttname" > < a href = "classgridfire_1_1exceptions_1_1_stale_engine_trigger.html" > gridfire::exceptions::StaleEngineTrigger< / a > < / div > < div class = "ttdef" > < b > Definition< / b > < a href = "error__engine_8h_source.html#l00010" > error_engine.h:10< / a > < / div > < / div >
< div class = "ttc" id = "aclassgridfire_1_1exceptions_1_1_stale_engine_trigger_html_a06eb9eb03750038c193c23c7f53668f5" > < div class = "ttname" > < a href = "classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a06eb9eb03750038c193c23c7f53668f5" > gridfire::exceptions::StaleEngineTrigger::getState< / a > < / div > < div class = "ttdeci" > state getState() const< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "error__engine_8h_source.html#l00027" > error_engine.h:27< / a > < / div > < / div >
< div class = "ttc" id = "aclassgridfire_1_1exceptions_1_1_stale_engine_trigger_html_a0b7c627c3e69390808bef352b3875408" > < div class = "ttname" > < a href = "classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a0b7c627c3e69390808bef352b3875408" > gridfire::exceptions::StaleEngineTrigger::totalSteps< / a > < / div > < div class = "ttdeci" > size_t totalSteps() const< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "error__engine_8h_source.html#l00035" > error_engine.h:35< / a > < / div > < / div >
< div class = "ttc" id = "aclassgridfire_1_1exceptions_1_1_stale_engine_trigger_html_a2f5925b67562cebd08568fce76c739e9" > < div class = "ttname" > < a href = "classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a2f5925b67562cebd08568fce76c739e9" > gridfire::exceptions::StaleEngineTrigger::temperature< / a > < / div > < div class = "ttdeci" > double temperature() const< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "error__engine_8h_source.html#l00050" > error_engine.h:50< / a > < / div > < / div >
< div class = "ttc" id = "aclassgridfire_1_1exceptions_1_1_stale_engine_trigger_html_a3183a0030b14253eb49d8304fb6665ea" > < div class = "ttname" > < a href = "classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a3183a0030b14253eb49d8304fb6665ea" > gridfire::exceptions::StaleEngineTrigger::getMolarAbundance< / a > < / div > < div class = "ttdeci" > double getMolarAbundance(const size_t index) const< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "error__engine_8h_source.html#l00043" > error_engine.h:43< / a > < / div > < / div >
< div class = "ttc" id = "aclassgridfire_1_1exceptions_1_1_stale_engine_trigger_html_a44ac2f7510ecf86cd5b556a842eee30c" > < div class = "ttname" > < a href = "classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a44ac2f7510ecf86cd5b556a842eee30c" > gridfire::exceptions::StaleEngineTrigger::numSpecies< / a > < / div > < div class = "ttdeci" > size_t numSpecies() const< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "error__engine_8h_source.html#l00031" > error_engine.h:31< / a > < / div > < / div >
< div class = "ttc" id = "aclassgridfire_1_1exceptions_1_1_stale_engine_trigger_html_ae8156ed7e659cb629da24a5b6734e2dc" > < div class = "ttname" > < a href = "classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#ae8156ed7e659cb629da24a5b6734e2dc" > gridfire::exceptions::StaleEngineTrigger::density< / a > < / div > < div class = "ttdeci" > double density() const< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "error__engine_8h_source.html#l00054" > error_engine.h:54< / a > < / div > < / div >
< div class = "ttc" id = "aclassgridfire_1_1exceptions_1_1_stale_engine_trigger_html_aeebfb529118f8dfcaf1422ae1768f2bf" > < div class = "ttname" > < a href = "classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#aeebfb529118f8dfcaf1422ae1768f2bf" > gridfire::exceptions::StaleEngineTrigger::energy< / a > < / div > < div class = "ttdeci" > double energy() const< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "error__engine_8h_source.html#l00039" > error_engine.h:39< / a > < / div > < / div >
< div class = "ttc" id = "aclassgridfire_1_1solver_1_1_direct_network_solver_html_a093aa89fd23c2fe03266e286871c7079" > < div class = "ttname" > < a href = "classgridfire_1_1solver_1_1_direct_network_solver.html#a093aa89fd23c2fe03266e286871c7079" > gridfire::solver::DirectNetworkSolver::m_logger< / a > < / div > < div class = "ttdeci" > quill::Logger * m_logger< / div > < div class = "ttdoc" > Logger instance.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "solver_8h_source.html#l00180" > solver.h:180< / a > < / div > < / div >
< div class = "ttc" id = "aclassgridfire_1_1solver_1_1_direct_network_solver_html_a0e8a4b8ef656e0b084d11bea982e412a" > < div class = "ttname" > < a href = "classgridfire_1_1solver_1_1_direct_network_solver.html#a0e8a4b8ef656e0b084d11bea982e412a" > gridfire::solver::DirectNetworkSolver::evaluate< / a > < / div > < div class = "ttdeci" > NetOut evaluate(const NetIn & netIn) override< / div > < div class = "ttdoc" > Evaluates the network for a given timestep using direct integration.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "#l00022" > solver.cpp:22< / a > < / div > < / div >
< div class = "ttc" id = "aclassgridfire_1_1solver_1_1_direct_network_solver_html_a2cc12e737a753a42b72a45be3fbfa8ab" > < div class = "ttname" > < a href = "classgridfire_1_1solver_1_1_direct_network_solver.html#a2cc12e737a753a42b72a45be3fbfa8ab" > gridfire::solver::DirectNetworkSolver::m_config< / a > < / div > < div class = "ttdeci" > Config & m_config< / div > < div class = "ttdoc" > Configuration instance.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "solver_8h_source.html#l00181" > solver.h:181< / a > < / div > < / div >
< div class = "ttc" id = "aclassgridfire_1_1solver_1_1_network_solver_strategy_html_a724924d94eaf82b67d9988a55c3261e8" > < div class = "ttname" > < a href = "classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8" > gridfire::solver::NetworkSolverStrategy< DynamicEngine > ::m_engine< / a > < / div > < div class = "ttdeci" > DynamicEngine & m_engine< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "solver_8h_source.html#l00047" > solver.h:47< / a > < / div > < / div >
2025-07-01 07:24:18 -04:00
< div class = "ttc" id = "aengine__graph_8h_html" > < div class = "ttname" > < a href = "engine__graph_8h.html" > engine_graph.h< / a > < / div > < / div >
2025-07-24 11:10:45 -04:00
< div class = "ttc" id = "aerror__engine_8h_html" > < div class = "ttname" > < a href = "error__engine_8h.html" > error_engine.h< / a > < / div > < / div >
< div class = "ttc" id = "anamespacegridfire_1_1solver_html" > < div class = "ttname" > < a href = "namespacegridfire_1_1solver.html" > gridfire::solver< / a > < / div > < div class = "ttdef" > < b > Definition< / b > < a href = "solver_8h_source.html#l00015" > solver.h:15< / a > < / div > < / div >
< div class = "ttc" id = "anamespacegridfire_html_a96c062f94713921e5d7568ecedcdcb06" > < div class = "ttname" > < a href = "namespacegridfire.html#a96c062f94713921e5d7568ecedcdcb06" > gridfire::MIN_ABUNDANCE_THRESHOLD< / a > < / div > < div class = "ttdeci" > static constexpr double MIN_ABUNDANCE_THRESHOLD< / div > < div class = "ttdoc" > Minimum abundance threshold below which species are ignored.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "engine__graph_8h_source.html#l00067" > engine_graph.h:67< / a > < / div > < / div >
2025-07-01 07:24:18 -04:00
< div class = "ttc" id = "anetwork_8h_html" > < div class = "ttname" > < a href = "network_8h.html" > network.h< / a > < / div > < / div >
< div class = "ttc" id = "asolver_8h_html" > < div class = "ttname" > < a href = "solver_8h.html" > solver.h< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1_net_in_html" > < div class = "ttname" > < a href = "structgridfire_1_1_net_in.html" > gridfire::NetIn< / a > < / div > < div class = "ttdef" > < b > Definition< / b > < a href = "network_8h_source.html#l00053" > network.h:53< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1_net_in_html_a06f0dff9f8927b7cf2da3004c8fa1577" > < div class = "ttname" > < a href = "structgridfire_1_1_net_in.html#a06f0dff9f8927b7cf2da3004c8fa1577" > gridfire::NetIn::density< / a > < / div > < div class = "ttdeci" > double density< / div > < div class = "ttdoc" > Density in g/cm^3.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "network_8h_source.html#l00058" > network.h:58< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1_net_in_html_a0a8d820cfeaa92ee31f253795c57e0d1" > < div class = "ttname" > < a href = "structgridfire_1_1_net_in.html#a0a8d820cfeaa92ee31f253795c57e0d1" > gridfire::NetIn::tMax< / a > < / div > < div class = "ttdeci" > double tMax< / div > < div class = "ttdoc" > Maximum time.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "network_8h_source.html#l00055" > network.h:55< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1_net_in_html_a13058f4929e72c1187abbebcddb8aed1" > < div class = "ttname" > < a href = "structgridfire_1_1_net_in.html#a13058f4929e72c1187abbebcddb8aed1" > gridfire::NetIn::composition< / a > < / div > < div class = "ttdeci" > fourdst::composition::Composition composition< / div > < div class = "ttdoc" > Composition of the network.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "network_8h_source.html#l00054" > network.h:54< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1_net_in_html_a4e556f7bb18f46654b3445476734076a" > < div class = "ttname" > < a href = "structgridfire_1_1_net_in.html#a4e556f7bb18f46654b3445476734076a" > gridfire::NetIn::dt0< / a > < / div > < div class = "ttdeci" > double dt0< / div > < div class = "ttdoc" > Initial time step.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "network_8h_source.html#l00056" > network.h:56< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1_net_in_html_a5be0f5195a5cd1dd177b9fc5ab83a7be" > < div class = "ttname" > < a href = "structgridfire_1_1_net_in.html#a5be0f5195a5cd1dd177b9fc5ab83a7be" > gridfire::NetIn::temperature< / a > < / div > < div class = "ttdeci" > double temperature< / div > < div class = "ttdoc" > Temperature in Kelvin.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "network_8h_source.html#l00057" > network.h:57< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1_net_out_html" > < div class = "ttname" > < a href = "structgridfire_1_1_net_out.html" > gridfire::NetOut< / a > < / div > < div class = "ttdef" > < b > Definition< / b > < a href = "network_8h_source.html#l00065" > network.h:65< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1_net_out_html_a073529511ae0e52f868b47cce0e8ac0a" > < div class = "ttname" > < a href = "structgridfire_1_1_net_out.html#a073529511ae0e52f868b47cce0e8ac0a" > gridfire::NetOut::composition< / a > < / div > < div class = "ttdeci" > fourdst::composition::Composition composition< / div > < div class = "ttdoc" > Composition of the network after evaluation.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "network_8h_source.html#l00066" > network.h:66< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1_net_out_html_a43d5a861708992c949f616aa2a035ec6" > < div class = "ttname" > < a href = "structgridfire_1_1_net_out.html#a43d5a861708992c949f616aa2a035ec6" > gridfire::NetOut::energy< / a > < / div > < div class = "ttdeci" > double energy< / div > < div class = "ttdoc" > Energy in ergs after evaluation.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "network_8h_source.html#l00068" > network.h:68< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1_net_out_html_a51c16703132cf739ec2fd89eae7badd6" > < div class = "ttname" > < a href = "structgridfire_1_1_net_out.html#a51c16703132cf739ec2fd89eae7badd6" > gridfire::NetOut::num_steps< / a > < / div > < div class = "ttdeci" > int num_steps< / div > < div class = "ttdoc" > Number of steps taken in the evaluation.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "network_8h_source.html#l00067" > network.h:67< / a > < / div > < / div >
2025-07-24 11:10:45 -04:00
< div class = "ttc" id = "astructgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state_html" > < div class = "ttname" > < a href = "structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html" > gridfire::exceptions::StaleEngineTrigger::state< / a > < / div > < div class = "ttdef" > < b > Definition< / b > < a href = "error__engine_8h_source.html#l00012" > error_engine.h:12< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor_html" > < div class = "ttname" > < a href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html" > gridfire::solver::DirectNetworkSolver::JacobianFunctor< / a > < / div > < div class = "ttdoc" > Functor for calculating the Jacobian matrix.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "solver_8h_source.html#l00143" > solver.h:143< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor_html_a56f8b2b222fb2a7dac190ead0babfdd0" > < div class = "ttname" > < a href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a56f8b2b222fb2a7dac190ead0babfdd0" > gridfire::solver::DirectNetworkSolver::JacobianFunctor::m_engine< / a > < / div > < div class = "ttdeci" > DynamicEngine & m_engine< / div > < div class = "ttdoc" > The engine used to evaluate the network.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "solver_8h_source.html#l00144" > solver.h:144< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor_html_ad4fc0b406218aa2f567f5c61a4eda3c9" > < div class = "ttname" > < a href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#ad4fc0b406218aa2f567f5c61a4eda3c9" > gridfire::solver::DirectNetworkSolver::JacobianFunctor::operator()< / a > < / div > < div class = "ttdeci" > void operator()(const boost::numeric::ublas::vector< double > & Y, boost::numeric::ublas::matrix< double > & J, double t, boost::numeric::ublas::vector< double > & dfdt) const< / div > < div class = "ttdoc" > Calculates the Jacobian matrix.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "#l00215" > solver.cpp:215< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager_html" > < div class = "ttname" > < a href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html" > gridfire::solver::DirectNetworkSolver::RHSManager< / a > < / div > < div class = "ttdef" > < b > Definition< / b > < a href = "solver_8h_source.html#l00088" > solver.h:88< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager_html_a035962dfdfc13d255def98befefcccd9" > < div class = "ttname" > < a href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a035962dfdfc13d255def98befefcccd9" > gridfire::solver::DirectNetworkSolver::RHSManager::m_engine< / a > < / div > < div class = "ttdeci" > DynamicEngine & m_engine< / div > < div class = "ttdoc" > The engine used to evaluate the network.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "solver_8h_source.html#l00089" > solver.h:89< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager_html_a17b83f2478395c934c4ec2c964e9d35e" > < div class = "ttname" > < a href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a17b83f2478395c934c4ec2c964e9d35e" > gridfire::solver::DirectNetworkSolver::RHSManager::m_cached_time< / a > < / div > < div class = "ttdeci" > double m_cached_time< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "solver_8h_source.html#l00093" > solver.h:93< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager_html_a226b007bfc9960b5c0bb7b88b4f122da" > < div class = "ttname" > < a href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a226b007bfc9960b5c0bb7b88b4f122da" > gridfire::solver::DirectNetworkSolver::RHSManager::observe< / a > < / div > < div class = "ttdeci" > void observe(const boost::numeric::ublas::vector< double > & state, double t) const< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "#l00167" > solver.cpp:167< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager_html_a46e39ab9f9fd2f3822c72712173d7aef" > < div class = "ttname" > < a href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a46e39ab9f9fd2f3822c72712173d7aef" > gridfire::solver::DirectNetworkSolver::RHSManager::m_T9< / a > < / div > < div class = "ttdeci" > const double m_T9< / div > < div class = "ttdoc" > Temperature in units of 10^9 K.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "solver_8h_source.html#l00090" > solver.h:90< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager_html_a49268e65b89444c3caf1e69323ce545b" > < div class = "ttname" > < a href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a49268e65b89444c3caf1e69323ce545b" > gridfire::solver::DirectNetworkSolver::RHSManager::m_last_observed_time< / a > < / div > < div class = "ttdeci" > double m_last_observed_time< / div > < div class = "ttdoc" > Last time the state was observed.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "solver_8h_source.html#l00096" > solver.h:96< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager_html_a595aa16333693ee2bbcac35aa85a1c2a" > < div class = "ttname" > < a href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a595aa16333693ee2bbcac35aa85a1c2a" > gridfire::solver::DirectNetworkSolver::RHSManager::compute_and_cache< / a > < / div > < div class = "ttdeci" > void compute_and_cache(const boost::numeric::ublas::vector< double > & state, double t) const< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "#l00189" > solver.cpp:189< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager_html_a69d773a1cfe4804876dbf23de1f212c9" > < div class = "ttname" > < a href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a69d773a1cfe4804876dbf23de1f212c9" > gridfire::solver::DirectNetworkSolver::RHSManager::m_last_step_time< / a > < / div > < div class = "ttdeci" > double m_last_step_time< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "solver_8h_source.html#l00101" > solver.h:101< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager_html_a6cc605a83b5ac5ae048d1044be284ada" > < div class = "ttname" > < a href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#a6cc605a83b5ac5ae048d1044be284ada" > gridfire::solver::DirectNetworkSolver::RHSManager::m_logger< / a > < / div > < div class = "ttdeci" > quill::Logger * m_logger< / div > < div class = "ttdoc" > Logger instance.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "solver_8h_source.html#l00099" > solver.h:99< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager_html_aa5d0316fa2fd7d817cc77303776ab446" > < div class = "ttname" > < a href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#aa5d0316fa2fd7d817cc77303776ab446" > gridfire::solver::DirectNetworkSolver::RHSManager::m_rho< / a > < / div > < div class = "ttdeci" > const double m_rho< / div > < div class = "ttdoc" > Density in g/cm^3.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "solver_8h_source.html#l00091" > solver.h:91< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager_html_acfecb0ebb0429f112d503771764f27ec" > < div class = "ttname" > < a href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#acfecb0ebb0429f112d503771764f27ec" > gridfire::solver::DirectNetworkSolver::RHSManager::m_cached_result< / a > < / div > < div class = "ttdeci" > std::optional< StepDerivatives< double > > m_cached_result< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "solver_8h_source.html#l00094" > solver.h:94< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager_html_ad9a07ff5cbe42a9455561903a0ae1708" > < div class = "ttname" > < a href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#ad9a07ff5cbe42a9455561903a0ae1708" > gridfire::solver::DirectNetworkSolver::RHSManager::m_num_steps< / a > < / div > < div class = "ttdeci" > int m_num_steps< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "solver_8h_source.html#l00100" > solver.h:100< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager_html_aec8c0a0b2fbb71cebb40c263f64385b3" > < div class = "ttname" > < a href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_manager.html#aec8c0a0b2fbb71cebb40c263f64385b3" > gridfire::solver::DirectNetworkSolver::RHSManager::operator()< / a > < / div > < div class = "ttdeci" > void operator()(const boost::numeric::ublas::vector< double > & Y, boost::numeric::ublas::vector< double > & dYdt, double t) const< / div > < div class = "ttdoc" > Calculates the time derivatives of the species abundances.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "#l00152" > solver.cpp:152< / a > < / div > < / div >
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