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< a href = "solver_8cpp.html" > Go to the documentation of this file.< / a > < div class = "fragment" > < div class = "line" > < a id = "l00001" name = "l00001" > < / a > < span class = "lineno" > 1< / span > < span class = "preprocessor" > #include " < a class = "code" href = "solver_8h.html" > gridfire/solver/solver.h< / a > " < / span > < / div >
< div class = "line" > < a id = "l00002" name = "l00002" > < / a > < span class = "lineno" > 2< / span > < span class = "preprocessor" > #include " < a class = "code" href = "engine__graph_8h.html" > gridfire/engine/engine_graph.h< / a > " < / span > < / div >
< div class = "line" > < a id = "l00003" name = "l00003" > < / a > < span class = "lineno" > 3< / span > < span class = "preprocessor" > #include " < a class = "code" href = "network_8h.html" > gridfire/network.h< / a > " < / span > < / div >
< div class = "line" > < a id = "l00004" name = "l00004" > < / a > < span class = "lineno" > 4< / span > < / div >
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< div class = "line" > < a id = "l00005" name = "l00005" > < / a > < span class = "lineno" > 5< / span > < span class = "preprocessor" > #include " < a class = "code" href = "logging_8h.html" > gridfire/utils/logging.h< / a > " < / span > < / div >
< div class = "line" > < a id = "l00006" name = "l00006" > < / a > < span class = "lineno" > 6< / span > < / div >
< div class = "line" > < a id = "l00007" name = "l00007" > < / a > < span class = "lineno" > 7< / span > < span class = "preprocessor" > #include " fourdst/composition/atomicSpecies.h" < / span > < / div >
< div class = "line" > < a id = "l00008" name = "l00008" > < / a > < span class = "lineno" > 8< / span > < span class = "preprocessor" > #include " fourdst/composition/composition.h" < / span > < / div >
< div class = "line" > < a id = "l00009" name = "l00009" > < / a > < span class = "lineno" > 9< / span > < span class = "preprocessor" > #include " fourdst/config/config.h" < / span > < / div >
< div class = "line" > < a id = "l00010" name = "l00010" > < / a > < span class = "lineno" > 10< / span > < / div >
< div class = "line" > < a id = "l00011" name = "l00011" > < / a > < span class = "lineno" > 11< / span > < span class = "preprocessor" > #include " Eigen/Dense" < / span > < / div >
< div class = "line" > < a id = "l00012" name = "l00012" > < / a > < span class = "lineno" > 12< / span > < span class = "preprocessor" > #include " unsupported/Eigen/NonLinearOptimization" < / span > < / div >
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< div class = "line" > < a id = "l00013" name = "l00013" > < / a > < span class = "lineno" > 13< / span > < / div >
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< div class = "line" > < a id = "l00014" name = "l00014" > < / a > < span class = "lineno" > 14< / span > < span class = "preprocessor" > #include < boost/numeric/odeint.hpp> < / span > < / div >
< div class = "line" > < a id = "l00015" name = "l00015" > < / a > < span class = "lineno" > 15< / span > < / div >
< div class = "line" > < a id = "l00016" name = "l00016" > < / a > < span class = "lineno" > 16< / span > < span class = "preprocessor" > #include < vector> < / span > < / div >
< div class = "line" > < a id = "l00017" name = "l00017" > < / a > < span class = "lineno" > 17< / span > < span class = "preprocessor" > #include < unordered_map> < / span > < / div >
< div class = "line" > < a id = "l00018" name = "l00018" > < / a > < span class = "lineno" > 18< / span > < span class = "preprocessor" > #include < string> < / span > < / div >
< div class = "line" > < a id = "l00019" name = "l00019" > < / a > < span class = "lineno" > 19< / span > < span class = "preprocessor" > #include < stdexcept> < / span > < / div >
< div class = "line" > < a id = "l00020" name = "l00020" > < / a > < span class = "lineno" > 20< / span > < span class = "preprocessor" > #include < iomanip> < / span > < / div >
< div class = "line" > < a id = "l00021" name = "l00021" > < / a > < span class = "lineno" > 21< / span > < / div >
< div class = "line" > < a id = "l00022" name = "l00022" > < / a > < span class = "lineno" > 22< / span > < span class = "preprocessor" > #include " quill/LogMacros.h" < / span > < / div >
< div class = "line" > < a id = "l00023" name = "l00023" > < / a > < span class = "lineno" > 23< / span > < / div >
< div class = "line" > < a id = "l00024" name = "l00024" > < / a > < span class = "lineno" > 24< / span > < span class = "keyword" > namespace < / span > < a class = "code hl_namespace" href = "namespacegridfire_1_1solver.html" > gridfire::solver< / a > {< / div >
< div class = "line" > < a id = "l00025" name = "l00025" > < / a > < span class = "lineno" > 25< / span > < / div >
< div class = "foldopen" id = "foldopen00026" data-start = "{" data-end = "}" >
< div class = "line" > < a id = "l00026" name = "l00026" > < / a > < span class = "lineno" > < a class = "line" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a53b5496db7fed6f345dca39656bf9c0e" > 26< / a > < / span > < a class = "code hl_struct" href = "structgridfire_1_1_net_out.html" > NetOut< / a > < a class = "code hl_function" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a53b5496db7fed6f345dca39656bf9c0e" > QSENetworkSolver::evaluate< / a > (< span class = "keyword" > const< / span > < a class = "code hl_struct" href = "structgridfire_1_1_net_in.html" > NetIn< / a > & netIn) {< / div >
< div class = "line" > < a id = "l00027" name = "l00027" > < / a > < span class = "lineno" > 27< / span > < span class = "comment" > // --- Use the policy to decide whether to update the view ---< / span > < / div >
< div class = "line" > < a id = "l00028" name = "l00028" > < / a > < span class = "lineno" > 28< / span > < span class = "keywordflow" > if< / span > (< a class = "code hl_function" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a35f1f6ede393f15c8bb8862f3f1c3b07" > shouldUpdateView< / a > (netIn)) {< / div >
< div class = "line" > < a id = "l00029" name = "l00029" > < / a > < span class = "lineno" > 29< / span > LOG_DEBUG(< a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7" > m_logger< / a > , < span class = "stringliteral" > " Solver update policy triggered, network view updating..." < / span > );< / div >
< div class = "line" > < a id = "l00030" name = "l00030" > < / a > < span class = "lineno" > 30< / span > < a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8" > m_engine< / a > .update(netIn);< / div >
< div class = "line" > < a id = "l00031" name = "l00031" > < / a > < span class = "lineno" > 31< / span > LOG_DEBUG(< a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7" > m_logger< / a > , < span class = "stringliteral" > " Network view updated!" < / span > );< / div >
< div class = "line" > < a id = "l00032" name = "l00032" > < / a > < span class = "lineno" > 32< / span > < / div >
< div class = "line" > < a id = "l00033" name = "l00033" > < / a > < span class = "lineno" > 33< / span > < a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a3c9d46c8f5c519854cd65309a588772f" > m_lastSeenConditions< / a > = netIn;< / div >
< div class = "line" > < a id = "l00034" name = "l00034" > < / a > < span class = "lineno" > 34< / span > < a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#ab07e68fd418ab058f890502d191b3f18" > m_isViewInitialized< / a > = < span class = "keyword" > true< / span > ;< / div >
< div class = "line" > < a id = "l00035" name = "l00035" > < / a > < span class = "lineno" > 35< / span > }< / div >
< div class = "line" > < a id = "l00036" name = "l00036" > < / a > < span class = "lineno" > 36< / span > < a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8" > m_engine< / a > .generateJacobianMatrix(netIn.< a class = "code hl_function" href = "structgridfire_1_1_net_in.html#a47781e8d5503e3b4f12d669e2cbcfb65" > MolarAbundance< / a > (), netIn.< a class = "code hl_variable" href = "structgridfire_1_1_net_in.html#a5be0f5195a5cd1dd177b9fc5ab83a7be" > temperature< / a > / 1e9, netIn.< a class = "code hl_variable" href = "structgridfire_1_1_net_in.html#a06f0dff9f8927b7cf2da3004c8fa1577" > density< / a > );< / div >
< div class = "line" > < a id = "l00037" name = "l00037" > < / a > < span class = "lineno" > 37< / span > < span class = "keyword" > using < / span > state_type = boost::numeric::ublas::vector< double> ;< / div >
< div class = "line" > < a id = "l00038" name = "l00038" > < / a > < span class = "lineno" > 38< / span > < span class = "keyword" > using namespace < / span > boost::numeric::odeint;< / div >
< div class = "line" > < a id = "l00039" name = "l00039" > < / a > < span class = "lineno" > 39< / span > < / div >
< div class = "line" > < a id = "l00040" name = "l00040" > < / a > < span class = "lineno" > 40< / span > < a class = "code hl_struct" href = "structgridfire_1_1_net_out.html" > NetOut< / a > postIgnition = < a class = "code hl_function" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#abaa567001df0007b714f474febae408b" > initializeNetworkWithShortIgnition< / a > (netIn);< / div >
< div class = "line" > < a id = "l00041" name = "l00041" > < / a > < span class = "lineno" > 41< / span > < / div >
< div class = "line" > < a id = "l00042" name = "l00042" > < / a > < span class = "lineno" > 42< / span > < span class = "keyword" > constexpr< / span > < span class = "keywordtype" > double< / span > abundance_floor = 1.0e-30;< / div >
< div class = "line" > < a id = "l00043" name = "l00043" > < / a > < span class = "lineno" > 43< / span > std::vector< double> Y_sanitized_initial;< / div >
< div class = "line" > < a id = "l00044" name = "l00044" > < / a > < span class = "lineno" > 44< / span > Y_sanitized_initial.reserve(< a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8" > m_engine< / a > .getNetworkSpecies().size());< / div >
< div class = "line" > < a id = "l00045" name = "l00045" > < / a > < span class = "lineno" > 45< / span > < / div >
< div class = "line" > < a id = "l00046" name = "l00046" > < / a > < span class = "lineno" > 46< / span > LOG_DEBUG(< a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7" > m_logger< / a > , < span class = "stringliteral" > " Sanitizing initial abundances with a floor of {:0.3E}..." < / span > , abundance_floor);< / div >
< div class = "line" > < a id = "l00047" name = "l00047" > < / a > < span class = "lineno" > 47< / span > < span class = "keywordflow" > for< / span > (< span class = "keyword" > const< / span > < span class = "keyword" > auto< / span > & species : < a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8" > m_engine< / a > .getNetworkSpecies()) {< / div >
< div class = "line" > < a id = "l00048" name = "l00048" > < / a > < span class = "lineno" > 48< / span > < span class = "keywordtype" > double< / span > molar_abundance = 0.0;< / div >
< div class = "line" > < a id = "l00049" name = "l00049" > < / a > < span class = "lineno" > 49< / span > < span class = "keywordflow" > if< / span > (postIgnition.< a class = "code hl_variable" href = "structgridfire_1_1_net_out.html#a073529511ae0e52f868b47cce0e8ac0a" > composition< / a > .contains(species)) {< / div >
< div class = "line" > < a id = "l00050" name = "l00050" > < / a > < span class = "lineno" > 50< / span > molar_abundance = postIgnition.< a class = "code hl_variable" href = "structgridfire_1_1_net_out.html#a073529511ae0e52f868b47cce0e8ac0a" > composition< / a > .getMolarAbundance(std::string(species.name()));< / div >
< div class = "line" > < a id = "l00051" name = "l00051" > < / a > < span class = "lineno" > 51< / span > }< / div >
< div class = "line" > < a id = "l00052" name = "l00052" > < / a > < span class = "lineno" > 52< / span > < / div >
< div class = "line" > < a id = "l00053" name = "l00053" > < / a > < span class = "lineno" > 53< / span > < span class = "keywordflow" > if< / span > (molar_abundance < abundance_floor) {< / div >
< div class = "line" > < a id = "l00054" name = "l00054" > < / a > < span class = "lineno" > 54< / span > molar_abundance = abundance_floor;< / div >
< div class = "line" > < a id = "l00055" name = "l00055" > < / a > < span class = "lineno" > 55< / span > }< / div >
< div class = "line" > < a id = "l00056" name = "l00056" > < / a > < span class = "lineno" > 56< / span > Y_sanitized_initial.push_back(molar_abundance);< / div >
< div class = "line" > < a id = "l00057" name = "l00057" > < / a > < span class = "lineno" > 57< / span > }< / div >
< div class = "line" > < a id = "l00058" name = "l00058" > < / a > < span class = "lineno" > 58< / span > < span class = "keyword" > const< / span > < span class = "keywordtype" > double< / span > T9 = netIn.< a class = "code hl_variable" href = "structgridfire_1_1_net_in.html#a5be0f5195a5cd1dd177b9fc5ab83a7be" > temperature< / a > / 1e9; < span class = "comment" > // Convert temperature from Kelvin to T9 (T9 = T / 1e9)< / span > < / div >
< div class = "line" > < a id = "l00059" name = "l00059" > < / a > < span class = "lineno" > 59< / span > < span class = "keyword" > const< / span > < span class = "keywordtype" > double< / span > rho = netIn.< a class = "code hl_variable" href = "structgridfire_1_1_net_in.html#a06f0dff9f8927b7cf2da3004c8fa1577" > density< / a > ; < span class = "comment" > // Density in g/cm^3< / span > < / div >
< div class = "line" > < a id = "l00060" name = "l00060" > < / a > < span class = "lineno" > 60< / span > < / div >
< div class = "line" > < a id = "l00061" name = "l00061" > < / a > < span class = "lineno" > 61< / span > < span class = "keyword" > const< / span > < span class = "keyword" > auto< / span > indices = < a class = "code hl_function" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a5d81ee5bfcfd5e77fe52201ba9e63719" > packSpeciesTypeIndexVectors< / a > (Y_sanitized_initial, T9, rho);< / div >
< div class = "line" > < a id = "l00062" name = "l00062" > < / a > < span class = "lineno" > 62< / span > Eigen::VectorXd Y_QSE;< / div >
< div class = "line" > < a id = "l00063" name = "l00063" > < / a > < span class = "lineno" > 63< / span > < span class = "keywordflow" > try< / span > {< / div >
< div class = "line" > < a id = "l00064" name = "l00064" > < / a > < span class = "lineno" > 64< / span > Y_QSE = < a class = "code hl_function" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a00d112f6087f6e3a93f4d40a519308d2" > calculateSteadyStateAbundances< / a > (Y_sanitized_initial, T9, rho, indices);< / div >
< div class = "line" > < a id = "l00065" name = "l00065" > < / a > < span class = "lineno" > 65< / span > LOG_DEBUG(< a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7" > m_logger< / a > , < span class = "stringliteral" > " QSE Abundances: {}" < / span > , [*< span class = "keyword" > this< / span > ](< span class = "keyword" > const< / span > < a class = "code hl_struct" href = "structgridfire_1_1solver_1_1dynamic_q_s_e_species_indices.html" > dynamicQSESpeciesIndices< / a > & indices, < span class = "keyword" > const< / span > Eigen::VectorXd& Y_QSE) -> std::string {< / div >
< div class = "line" > < a id = "l00066" name = "l00066" > < / a > < span class = "lineno" > 66< / span > std::stringstream ss;< / div >
< div class = "line" > < a id = "l00067" name = "l00067" > < / a > < span class = "lineno" > 67< / span > ss < < std::scientific < < std::setprecision(5);< / div >
< div class = "line" > < a id = "l00068" name = "l00068" > < / a > < span class = "lineno" > 68< / span > < span class = "keywordflow" > for< / span > (< span class = "keywordtype" > size_t< / span > i = 0; i < indices.< a class = "code hl_variable" href = "structgridfire_1_1solver_1_1dynamic_q_s_e_species_indices.html#a7d4ba82d9e60a4914938ebebecaab4a2" > QSESpeciesIndices< / a > .size(); ++i) {< / div >
< div class = "line" > < a id = "l00069" name = "l00069" > < / a > < span class = "lineno" > 69< / span > ss < < std::string(< a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8" > m_engine< / a > .getNetworkSpecies()[indices.< a class = "code hl_variable" href = "structgridfire_1_1solver_1_1dynamic_q_s_e_species_indices.html#a7d4ba82d9e60a4914938ebebecaab4a2" > QSESpeciesIndices< / a > [i]].name()) + < span class = "stringliteral" > " : " < / span > ;< / div >
< div class = "line" > < a id = "l00070" name = "l00070" > < / a > < span class = "lineno" > 70< / span > ss < < Y_QSE(i);< / div >
< div class = "line" > < a id = "l00071" name = "l00071" > < / a > < span class = "lineno" > 71< / span > < span class = "keywordflow" > if< / span > (i < indices.< a class = "code hl_variable" href = "structgridfire_1_1solver_1_1dynamic_q_s_e_species_indices.html#a7d4ba82d9e60a4914938ebebecaab4a2" > QSESpeciesIndices< / a > .size() - 2) {< / div >
< div class = "line" > < a id = "l00072" name = "l00072" > < / a > < span class = "lineno" > 72< / span > ss < < < span class = "stringliteral" > " , " < / span > ;< / div >
< div class = "line" > < a id = "l00073" name = "l00073" > < / a > < span class = "lineno" > 73< / span > } < span class = "keywordflow" > else< / span > < span class = "keywordflow" > if< / span > (i == indices.< a class = "code hl_variable" href = "structgridfire_1_1solver_1_1dynamic_q_s_e_species_indices.html#a7d4ba82d9e60a4914938ebebecaab4a2" > QSESpeciesIndices< / a > .size() - 2) {< / div >
< div class = "line" > < a id = "l00074" name = "l00074" > < / a > < span class = "lineno" > 74< / span > ss < < < span class = "stringliteral" > " , and " < / span > ;< / div >
< div class = "line" > < a id = "l00075" name = "l00075" > < / a > < span class = "lineno" > 75< / span > }< / div >
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< div class = "line" > < a id = "l00076" name = "l00076" > < / a > < span class = "lineno" > 76< / span > < / div >
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< div class = "line" > < a id = "l00077" name = "l00077" > < / a > < span class = "lineno" > 77< / span > }< / div >
< div class = "line" > < a id = "l00078" name = "l00078" > < / a > < span class = "lineno" > 78< / span > < span class = "keywordflow" > return< / span > ss.str();< / div >
< div class = "line" > < a id = "l00079" name = "l00079" > < / a > < span class = "lineno" > 79< / span > }(indices, Y_QSE));< / div >
< div class = "line" > < a id = "l00080" name = "l00080" > < / a > < span class = "lineno" > 80< / span > } < span class = "keywordflow" > catch< / span > (< span class = "keyword" > const< / span > std::runtime_error& e) {< / div >
< div class = "line" > < a id = "l00081" name = "l00081" > < / a > < span class = "lineno" > 81< / span > LOG_ERROR(< a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7" > m_logger< / a > , < span class = "stringliteral" > " Failed to calculate steady state abundances. Aborting QSE evaluation." < / span > );< / div >
< div class = "line" > < a id = "l00082" name = "l00082" > < / a > < span class = "lineno" > 82< / span > < a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7" > m_logger< / a > -> flush_log();< / div >
< div class = "line" > < a id = "l00083" name = "l00083" > < / a > < span class = "lineno" > 83< / span > < span class = "keywordflow" > throw< / span > std::runtime_error(< span class = "stringliteral" > " Failed to calculate steady state abundances: " < / span > + std::string(e.what()));< / div >
< div class = "line" > < a id = "l00084" name = "l00084" > < / a > < span class = "lineno" > 84< / span > }< / div >
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< div class = "line" > < a id = "l00085" name = "l00085" > < / a > < span class = "lineno" > 85< / span > < / div >
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< div class = "line" > < a id = "l00086" name = "l00086" > < / a > < span class = "lineno" > 86< / span > state_type YDynamic_ublas(indices.dynamicSpeciesIndices.size() + 1);< / div >
< div class = "line" > < a id = "l00087" name = "l00087" > < / a > < span class = "lineno" > 87< / span > < span class = "keywordflow" > for< / span > (< span class = "keywordtype" > size_t< / span > i = 0; i < indices.dynamicSpeciesIndices.size(); ++i) {< / div >
< div class = "line" > < a id = "l00088" name = "l00088" > < / a > < span class = "lineno" > 88< / span > YDynamic_ublas(i) = Y_sanitized_initial[indices.dynamicSpeciesIndices[i]];< / div >
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< div class = "line" > < a id = "l00089" name = "l00089" > < / a > < span class = "lineno" > 89< / span > }< / div >
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< div class = "line" > < a id = "l00090" name = "l00090" > < / a > < span class = "lineno" > 90< / span > YDynamic_ublas(indices.dynamicSpeciesIndices.size()) = 0.0; < span class = "comment" > // Placeholder for specific energy rate< / span > < / div >
< div class = "line" > < a id = "l00091" name = "l00091" > < / a > < span class = "lineno" > 91< / span > < / div >
< div class = "line" > < a id = "l00092" name = "l00092" > < / a > < span class = "lineno" > 92< / span > < span class = "keyword" > const< / span > < a class = "code hl_struct" href = "structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html" > RHSFunctor< / a > rhs_functor(< a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8" > m_engine< / a > , indices.dynamicSpeciesIndices, indices.QSESpeciesIndices, Y_QSE, T9, rho);< / div >
< div class = "line" > < a id = "l00093" name = "l00093" > < / a > < span class = "lineno" > 93< / span > < span class = "keyword" > const< / span > < span class = "keyword" > auto< / span > stepper = make_controlled< runge_kutta_dopri5< state_type> > (1.0e-8, 1.0e-8);< / div >
< div class = "line" > < a id = "l00094" name = "l00094" > < / a > < span class = "lineno" > 94< / span > < / div >
< div class = "line" > < a id = "l00095" name = "l00095" > < / a > < span class = "lineno" > 95< / span > < span class = "keywordtype" > size_t< / span > stepCount = integrate_adaptive(< / div >
< div class = "line" > < a id = "l00096" name = "l00096" > < / a > < span class = "lineno" > 96< / span > stepper,< / div >
< div class = "line" > < a id = "l00097" name = "l00097" > < / a > < span class = "lineno" > 97< / span > rhs_functor,< / div >
< div class = "line" > < a id = "l00098" name = "l00098" > < / a > < span class = "lineno" > 98< / span > YDynamic_ublas,< / div >
< div class = "line" > < a id = "l00099" name = "l00099" > < / a > < span class = "lineno" > 99< / span > 0.0, < span class = "comment" > // Start time< / span > < / div >
< div class = "line" > < a id = "l00100" name = "l00100" > < / a > < span class = "lineno" > 100< / span > netIn.< a class = "code hl_variable" href = "structgridfire_1_1_net_in.html#a0a8d820cfeaa92ee31f253795c57e0d1" > tMax< / a > ,< / div >
< div class = "line" > < a id = "l00101" name = "l00101" > < / a > < span class = "lineno" > 101< / span > netIn.< a class = "code hl_variable" href = "structgridfire_1_1_net_in.html#a4e556f7bb18f46654b3445476734076a" > dt0< / a > < / div >
< div class = "line" > < a id = "l00102" name = "l00102" > < / a > < span class = "lineno" > 102< / span > );< / div >
< div class = "line" > < a id = "l00103" name = "l00103" > < / a > < span class = "lineno" > 103< / span > < / div >
< div class = "line" > < a id = "l00104" name = "l00104" > < / a > < span class = "lineno" > 104< / span > std::vector< double> YFinal = Y_sanitized_initial;< / div >
< div class = "line" > < a id = "l00105" name = "l00105" > < / a > < span class = "lineno" > 105< / span > < span class = "keywordflow" > for< / span > (< span class = "keywordtype" > size_t< / span > i = 0; i < indices.dynamicSpeciesIndices.size(); ++i) {< / div >
< div class = "line" > < a id = "l00106" name = "l00106" > < / a > < span class = "lineno" > 106< / span > YFinal[indices.dynamicSpeciesIndices[i]] = YDynamic_ublas(i);< / div >
< div class = "line" > < a id = "l00107" name = "l00107" > < / a > < span class = "lineno" > 107< / span > }< / div >
< div class = "line" > < a id = "l00108" name = "l00108" > < / a > < span class = "lineno" > 108< / span > < span class = "keywordflow" > for< / span > (< span class = "keywordtype" > size_t< / span > i = 0; i < indices.QSESpeciesIndices.size(); ++i) {< / div >
< div class = "line" > < a id = "l00109" name = "l00109" > < / a > < span class = "lineno" > 109< / span > YFinal[indices.QSESpeciesIndices[i]] = Y_QSE(i);< / div >
< div class = "line" > < a id = "l00110" name = "l00110" > < / a > < span class = "lineno" > 110< / span > }< / div >
< div class = "line" > < a id = "l00111" name = "l00111" > < / a > < span class = "lineno" > 111< / span > < / div >
< div class = "line" > < a id = "l00112" name = "l00112" > < / a > < span class = "lineno" > 112< / span > < span class = "keyword" > const< / span > < span class = "keywordtype" > double< / span > finalSpecificEnergyRate = YDynamic_ublas(indices.dynamicSpeciesIndices.size());< / div >
< div class = "line" > < a id = "l00113" name = "l00113" > < / a > < span class = "lineno" > 113< / span > < / div >
< div class = "line" > < a id = "l00114" name = "l00114" > < / a > < span class = "lineno" > 114< / span > < span class = "comment" > // --- Marshal output variables ---< / span > < / div >
< div class = "line" > < a id = "l00115" name = "l00115" > < / a > < span class = "lineno" > 115< / span > std::vector< std::string> speciesNames(< a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8" > m_engine< / a > .getNetworkSpecies().size());< / div >
< div class = "line" > < a id = "l00116" name = "l00116" > < / a > < span class = "lineno" > 116< / span > std::vector< double> finalMassFractions(< a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8" > m_engine< / a > .getNetworkSpecies().size());< / div >
< div class = "line" > < a id = "l00117" name = "l00117" > < / a > < span class = "lineno" > 117< / span > < span class = "keywordtype" > double< / span > massFractionSum = 0.0;< / div >
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< div class = "line" > < a id = "l00118" name = "l00118" > < / a > < span class = "lineno" > 118< / span > < / div >
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< div class = "line" > < a id = "l00119" name = "l00119" > < / a > < span class = "lineno" > 119< / span > < span class = "keywordflow" > for< / span > (< span class = "keywordtype" > size_t< / span > i = 0; i < speciesNames.size(); ++i) {< / div >
< div class = "line" > < a id = "l00120" name = "l00120" > < / a > < span class = "lineno" > 120< / span > < span class = "keyword" > const< / span > < span class = "keyword" > auto< / span > & species = < a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8" > m_engine< / a > .getNetworkSpecies()[i];< / div >
< div class = "line" > < a id = "l00121" name = "l00121" > < / a > < span class = "lineno" > 121< / span > speciesNames[i] = species.name();< / div >
< div class = "line" > < a id = "l00122" name = "l00122" > < / a > < span class = "lineno" > 122< / span > finalMassFractions[i] = YFinal[i] * species.mass(); < span class = "comment" > // Convert from molar abundance to mass fraction< / span > < / div >
< div class = "line" > < a id = "l00123" name = "l00123" > < / a > < span class = "lineno" > 123< / span > massFractionSum += finalMassFractions[i];< / div >
< div class = "line" > < a id = "l00124" name = "l00124" > < / a > < span class = "lineno" > 124< / span > }< / div >
< div class = "line" > < a id = "l00125" name = "l00125" > < / a > < span class = "lineno" > 125< / span > < span class = "keywordflow" > for< / span > (< span class = "keyword" > auto< / span > & mf : finalMassFractions) {< / div >
< div class = "line" > < a id = "l00126" name = "l00126" > < / a > < span class = "lineno" > 126< / span > mf /= massFractionSum; < span class = "comment" > // Normalize to get mass fractions< / span > < / div >
< div class = "line" > < a id = "l00127" name = "l00127" > < / a > < span class = "lineno" > 127< / span > }< / div >
< div class = "line" > < a id = "l00128" name = "l00128" > < / a > < span class = "lineno" > 128< / span > < / div >
< div class = "line" > < a id = "l00129" name = "l00129" > < / a > < span class = "lineno" > 129< / span > fourdst::composition::Composition outputComposition(speciesNames, finalMassFractions);< / div >
< div class = "line" > < a id = "l00130" name = "l00130" > < / a > < span class = "lineno" > 130< / span > < a class = "code hl_struct" href = "structgridfire_1_1_net_out.html" > NetOut< / a > netOut;< / div >
< div class = "line" > < a id = "l00131" name = "l00131" > < / a > < span class = "lineno" > 131< / span > netOut.< a class = "code hl_variable" href = "structgridfire_1_1_net_out.html#a073529511ae0e52f868b47cce0e8ac0a" > composition< / a > = outputComposition;< / div >
< div class = "line" > < a id = "l00132" name = "l00132" > < / a > < span class = "lineno" > 132< / span > netOut.< a class = "code hl_variable" href = "structgridfire_1_1_net_out.html#a43d5a861708992c949f616aa2a035ec6" > energy< / a > = finalSpecificEnergyRate; < span class = "comment" > // Specific energy rate< / span > < / div >
< div class = "line" > < a id = "l00133" name = "l00133" > < / a > < span class = "lineno" > 133< / span > netOut.< a class = "code hl_variable" href = "structgridfire_1_1_net_out.html#a51c16703132cf739ec2fd89eae7badd6" > num_steps< / a > = stepCount;< / div >
< div class = "line" > < a id = "l00134" name = "l00134" > < / a > < span class = "lineno" > 134< / span > < span class = "keywordflow" > return< / span > netOut;< / div >
< div class = "line" > < a id = "l00135" name = "l00135" > < / a > < span class = "lineno" > 135< / span > }< / div >
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< / div >
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< div class = "line" > < a id = "l00136" name = "l00136" > < / a > < span class = "lineno" > 136< / span > < / div >
< div class = "foldopen" id = "foldopen00137" data-start = "{" data-end = "}" >
< div class = "line" > < a id = "l00137" name = "l00137" > < / a > < span class = "lineno" > < a class = "line" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a5d81ee5bfcfd5e77fe52201ba9e63719" > 137< / a > < / span > < a class = "code hl_struct" href = "structgridfire_1_1solver_1_1dynamic_q_s_e_species_indices.html" > dynamicQSESpeciesIndices< / a > < a class = "code hl_function" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a5d81ee5bfcfd5e77fe52201ba9e63719" > QSENetworkSolver::packSpeciesTypeIndexVectors< / a > (< / div >
< div class = "line" > < a id = "l00138" name = "l00138" > < / a > < span class = "lineno" > 138< / span > < span class = "keyword" > const< / span > std::vector< double> & Y,< / div >
< div class = "line" > < a id = "l00139" name = "l00139" > < / a > < span class = "lineno" > 139< / span > < span class = "keyword" > const< / span > < span class = "keywordtype" > double< / span > T9,< / div >
< div class = "line" > < a id = "l00140" name = "l00140" > < / a > < span class = "lineno" > 140< / span > < span class = "keyword" > const< / span > < span class = "keywordtype" > double< / span > rho< / div >
< div class = "line" > < a id = "l00141" name = "l00141" > < / a > < span class = "lineno" > 141< / span > )< span class = "keyword" > const < / span > {< / div >
< div class = "line" > < a id = "l00142" name = "l00142" > < / a > < span class = "lineno" > 142< / span > < span class = "keyword" > constexpr< / span > < span class = "keywordtype" > double< / span > timescaleCutoff = 1.0e-5;< / div >
< div class = "line" > < a id = "l00143" name = "l00143" > < / a > < span class = "lineno" > 143< / span > < span class = "keyword" > constexpr< / span > < span class = "keywordtype" > double< / span > abundanceCutoff = 1.0e-15;< / div >
< div class = "line" > < a id = "l00144" name = "l00144" > < / a > < span class = "lineno" > 144< / span > < / div >
< div class = "line" > < a id = "l00145" name = "l00145" > < / a > < span class = "lineno" > 145< / span > LOG_INFO(< a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7" > m_logger< / a > , < span class = "stringliteral" > " Partitioning species using T9={:0.2f} and ρ " < / span > , T9, rho);< / div >
< div class = "line" > < a id = "l00146" name = "l00146" > < / a > < span class = "lineno" > 146< / span > LOG_INFO(< a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7" > m_logger< / a > , < span class = "stringliteral" > " Timescale Cutoff: {:.1e} s, Abundance Cutoff: {:.1e}" < / span > , timescaleCutoff, abundanceCutoff);< / div >
< div class = "line" > < a id = "l00147" name = "l00147" > < / a > < span class = "lineno" > 147< / span > < / div >
< div class = "line" > < a id = "l00148" name = "l00148" > < / a > < span class = "lineno" > 148< / span > std::vector< size_t> dynamicSpeciesIndices; < span class = "comment" > // Slow species that are not in QSE< / span > < / div >
< div class = "line" > < a id = "l00149" name = "l00149" > < / a > < span class = "lineno" > 149< / span > std::vector< size_t> QSESpeciesIndices; < span class = "comment" > // Fast species that are in QSE< / span > < / div >
< div class = "line" > < a id = "l00150" name = "l00150" > < / a > < span class = "lineno" > 150< / span > < / div >
< div class = "line" > < a id = "l00151" name = "l00151" > < / a > < span class = "lineno" > 151< / span > std::unordered_map< fourdst::atomic::Species, double> speciesTimescale = < a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8" > m_engine< / a > .getSpeciesTimescales(Y, T9, rho);< / div >
< div class = "line" > < a id = "l00152" name = "l00152" > < / a > < span class = "lineno" > 152< / span > < / div >
< div class = "line" > < a id = "l00153" name = "l00153" > < / a > < span class = "lineno" > 153< / span > < span class = "keywordflow" > for< / span > (< span class = "keywordtype" > size_t< / span > i = 0; i < < a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8" > m_engine< / a > .getNetworkSpecies().size(); ++i) {< / div >
< div class = "line" > < a id = "l00154" name = "l00154" > < / a > < span class = "lineno" > 154< / span > < span class = "keyword" > const< / span > < span class = "keyword" > auto< / span > & species = < a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8" > m_engine< / a > .getNetworkSpecies()[i];< / div >
< div class = "line" > < a id = "l00155" name = "l00155" > < / a > < span class = "lineno" > 155< / span > < span class = "keyword" > const< / span > < span class = "keywordtype" > double< / span > network_timescale = speciesTimescale.at(species);< / div >
< div class = "line" > < a id = "l00156" name = "l00156" > < / a > < span class = "lineno" > 156< / span > < span class = "keyword" > const< / span > < span class = "keywordtype" > double< / span > abundance = Y[i];< / div >
< div class = "line" > < a id = "l00157" name = "l00157" > < / a > < span class = "lineno" > 157< / span > < / div >
< div class = "line" > < a id = "l00158" name = "l00158" > < / a > < span class = "lineno" > 158< / span > < span class = "keywordtype" > double< / span > decay_timescale = std::numeric_limits< double> ::infinity();< / div >
< div class = "line" > < a id = "l00159" name = "l00159" > < / a > < span class = "lineno" > 159< / span > < span class = "keyword" > const< / span > < span class = "keywordtype" > double< / span > half_life = species.halfLife();< / div >
< div class = "line" > < a id = "l00160" name = "l00160" > < / a > < span class = "lineno" > 160< / span > < span class = "keywordflow" > if< / span > (half_life > 0 & & !std::isinf(half_life)) {< / div >
< div class = "line" > < a id = "l00161" name = "l00161" > < / a > < span class = "lineno" > 161< / span > < span class = "keyword" > constexpr< / span > < span class = "keywordtype" > double< / span > LN2 = 0.69314718056;< / div >
< div class = "line" > < a id = "l00162" name = "l00162" > < / a > < span class = "lineno" > 162< / span > decay_timescale = half_life / LN2;< / div >
< div class = "line" > < a id = "l00163" name = "l00163" > < / a > < span class = "lineno" > 163< / span > }< / div >
< div class = "line" > < a id = "l00164" name = "l00164" > < / a > < span class = "lineno" > 164< / span > < / div >
< div class = "line" > < a id = "l00165" name = "l00165" > < / a > < span class = "lineno" > 165< / span > < span class = "keyword" > const< / span > < span class = "keywordtype" > double< / span > final_timescale = std::min(network_timescale, decay_timescale);< / div >
< div class = "line" > < a id = "l00166" name = "l00166" > < / a > < span class = "lineno" > 166< / span > < / div >
< div class = "line" > < a id = "l00167" name = "l00167" > < / a > < span class = "lineno" > 167< / span > < span class = "keywordflow" > if< / span > (std::isinf(final_timescale) || abundance < abundanceCutoff || final_timescale < = timescaleCutoff) {< / div >
< div class = "line" > < a id = "l00168" name = "l00168" > < / a > < span class = "lineno" > 168< / span > QSESpeciesIndices.push_back(i);< / div >
< div class = "line" > < a id = "l00169" name = "l00169" > < / a > < span class = "lineno" > 169< / span > } < span class = "keywordflow" > else< / span > {< / div >
< div class = "line" > < a id = "l00170" name = "l00170" > < / a > < span class = "lineno" > 170< / span > dynamicSpeciesIndices.push_back(i);< / div >
< div class = "line" > < a id = "l00171" name = "l00171" > < / a > < span class = "lineno" > 171< / span > }< / div >
< div class = "line" > < a id = "l00172" name = "l00172" > < / a > < span class = "lineno" > 172< / span > }< / div >
< div class = "line" > < a id = "l00173" name = "l00173" > < / a > < span class = "lineno" > 173< / span > LOG_INFO(< a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7" > m_logger< / a > , < span class = "stringliteral" > " Partitioning complete. Dynamical species: {}, QSE species: {}." < / span > , dynamicSpeciesIndices.size(), QSESpeciesIndices.size());< / div >
< div class = "line" > < a id = "l00174" name = "l00174" > < / a > < span class = "lineno" > 174< / span > LOG_INFO(< a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7" > m_logger< / a > , < span class = "stringliteral" > " Dynamic species: {}" < / span > , [dynamicSpeciesIndices](< span class = "keyword" > const< / span > < a class = "code hl_class" href = "classgridfire_1_1_dynamic_engine.html" > DynamicEngine< / a > & engine_wrapper) -> std::string {< / div >
< div class = "line" > < a id = "l00175" name = "l00175" > < / a > < span class = "lineno" > 175< / span > std::string result;< / div >
< div class = "line" > < a id = "l00176" name = "l00176" > < / a > < span class = "lineno" > 176< / span > < span class = "keywordtype" > int< / span > count = 0;< / div >
< div class = "line" > < a id = "l00177" name = "l00177" > < / a > < span class = "lineno" > 177< / span > < span class = "keywordflow" > for< / span > (< span class = "keyword" > const< / span > < span class = "keyword" > auto< / span > & i : dynamicSpeciesIndices) {< / div >
< div class = "line" > < a id = "l00178" name = "l00178" > < / a > < span class = "lineno" > 178< / span > result += std::string(engine_wrapper.< a class = "code hl_function" href = "classgridfire_1_1_engine.html#a020e1b493d6964cafdad08fde697ceb3" > getNetworkSpecies< / a > ()[i].name());< / div >
< div class = "line" > < a id = "l00179" name = "l00179" > < / a > < span class = "lineno" > 179< / span > < span class = "keywordflow" > if< / span > (count < dynamicSpeciesIndices.size() - 2) {< / div >
< div class = "line" > < a id = "l00180" name = "l00180" > < / a > < span class = "lineno" > 180< / span > result += < span class = "stringliteral" > " , " < / span > ;< / div >
< div class = "line" > < a id = "l00181" name = "l00181" > < / a > < span class = "lineno" > 181< / span > } < span class = "keywordflow" > else< / span > < span class = "keywordflow" > if< / span > (count == dynamicSpeciesIndices.size() - 2) {< / div >
< div class = "line" > < a id = "l00182" name = "l00182" > < / a > < span class = "lineno" > 182< / span > result += < span class = "stringliteral" > " and " < / span > ;< / div >
< div class = "line" > < a id = "l00183" name = "l00183" > < / a > < span class = "lineno" > 183< / span > }< / div >
< div class = "line" > < a id = "l00184" name = "l00184" > < / a > < span class = "lineno" > 184< / span > count++;< / div >
< div class = "line" > < a id = "l00185" name = "l00185" > < / a > < span class = "lineno" > 185< / span > }< / div >
< div class = "line" > < a id = "l00186" name = "l00186" > < / a > < span class = "lineno" > 186< / span > < span class = "keywordflow" > return< / span > result;< / div >
< div class = "line" > < a id = "l00187" name = "l00187" > < / a > < span class = "lineno" > 187< / span > }(< a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8" > m_engine< / a > ));< / div >
< div class = "line" > < a id = "l00188" name = "l00188" > < / a > < span class = "lineno" > 188< / span > LOG_INFO(< a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7" > m_logger< / a > , < span class = "stringliteral" > " QSE species: {}" < / span > , [QSESpeciesIndices](< span class = "keyword" > const< / span > < a class = "code hl_class" href = "classgridfire_1_1_dynamic_engine.html" > DynamicEngine< / a > & engine_wrapper) -> std::string {< / div >
< div class = "line" > < a id = "l00189" name = "l00189" > < / a > < span class = "lineno" > 189< / span > std::string result;< / div >
< div class = "line" > < a id = "l00190" name = "l00190" > < / a > < span class = "lineno" > 190< / span > < span class = "keywordtype" > int< / span > count = 0;< / div >
< div class = "line" > < a id = "l00191" name = "l00191" > < / a > < span class = "lineno" > 191< / span > < span class = "keywordflow" > for< / span > (< span class = "keyword" > const< / span > < span class = "keyword" > auto< / span > & i : QSESpeciesIndices) {< / div >
< div class = "line" > < a id = "l00192" name = "l00192" > < / a > < span class = "lineno" > 192< / span > result += std::string(engine_wrapper.< a class = "code hl_function" href = "classgridfire_1_1_engine.html#a020e1b493d6964cafdad08fde697ceb3" > getNetworkSpecies< / a > ()[i].name());< / div >
< div class = "line" > < a id = "l00193" name = "l00193" > < / a > < span class = "lineno" > 193< / span > < span class = "keywordflow" > if< / span > (count < QSESpeciesIndices.size() - 2) {< / div >
< div class = "line" > < a id = "l00194" name = "l00194" > < / a > < span class = "lineno" > 194< / span > result += < span class = "stringliteral" > " , " < / span > ;< / div >
< div class = "line" > < a id = "l00195" name = "l00195" > < / a > < span class = "lineno" > 195< / span > } < span class = "keywordflow" > else< / span > < span class = "keywordflow" > if< / span > (count == QSESpeciesIndices.size() - 2) {< / div >
< div class = "line" > < a id = "l00196" name = "l00196" > < / a > < span class = "lineno" > 196< / span > result += < span class = "stringliteral" > " and " < / span > ;< / div >
< div class = "line" > < a id = "l00197" name = "l00197" > < / a > < span class = "lineno" > 197< / span > }< / div >
< div class = "line" > < a id = "l00198" name = "l00198" > < / a > < span class = "lineno" > 198< / span > count++;< / div >
< div class = "line" > < a id = "l00199" name = "l00199" > < / a > < span class = "lineno" > 199< / span > }< / div >
< div class = "line" > < a id = "l00200" name = "l00200" > < / a > < span class = "lineno" > 200< / span > < span class = "keywordflow" > return< / span > result;< / div >
< div class = "line" > < a id = "l00201" name = "l00201" > < / a > < span class = "lineno" > 201< / span > }(< a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8" > m_engine< / a > ));< / div >
< div class = "line" > < a id = "l00202" name = "l00202" > < / a > < span class = "lineno" > 202< / span > < span class = "keywordflow" > return< / span > {dynamicSpeciesIndices, QSESpeciesIndices};< / div >
< div class = "line" > < a id = "l00203" name = "l00203" > < / a > < span class = "lineno" > 203< / span > }< / div >
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< / div >
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< div class = "line" > < a id = "l00204" name = "l00204" > < / a > < span class = "lineno" > 204< / span > < / div >
< div class = "foldopen" id = "foldopen00205" data-start = "{" data-end = "}" >
< div class = "line" > < a id = "l00205" name = "l00205" > < / a > < span class = "lineno" > < a class = "line" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a00d112f6087f6e3a93f4d40a519308d2" > 205< / a > < / span > Eigen::VectorXd < a class = "code hl_function" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a00d112f6087f6e3a93f4d40a519308d2" > QSENetworkSolver::calculateSteadyStateAbundances< / a > (< / div >
< div class = "line" > < a id = "l00206" name = "l00206" > < / a > < span class = "lineno" > 206< / span > < span class = "keyword" > const< / span > std::vector< double> & Y,< / div >
< div class = "line" > < a id = "l00207" name = "l00207" > < / a > < span class = "lineno" > 207< / span > < span class = "keyword" > const< / span > < span class = "keywordtype" > double< / span > T9,< / div >
< div class = "line" > < a id = "l00208" name = "l00208" > < / a > < span class = "lineno" > 208< / span > < span class = "keyword" > const< / span > < span class = "keywordtype" > double< / span > rho,< / div >
< div class = "line" > < a id = "l00209" name = "l00209" > < / a > < span class = "lineno" > 209< / span > < span class = "keyword" > const< / span > < a class = "code hl_struct" href = "structgridfire_1_1solver_1_1dynamic_q_s_e_species_indices.html" > dynamicQSESpeciesIndices< / a > & indices< / div >
< div class = "line" > < a id = "l00210" name = "l00210" > < / a > < span class = "lineno" > 210< / span > )< span class = "keyword" > const < / span > {< / div >
< div class = "line" > < a id = "l00211" name = "l00211" > < / a > < span class = "lineno" > 211< / span > LOG_TRACE_L1(< a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7" > m_logger< / a > , < span class = "stringliteral" > " Calculating steady state abundances for QSE species..." < / span > );< / div >
< div class = "line" > < a id = "l00212" name = "l00212" > < / a > < span class = "lineno" > 212< / span > < / div >
< div class = "line" > < a id = "l00213" name = "l00213" > < / a > < span class = "lineno" > 213< / span > < span class = "keywordflow" > if< / span > (indices.< a class = "code hl_variable" href = "structgridfire_1_1solver_1_1dynamic_q_s_e_species_indices.html#a7d4ba82d9e60a4914938ebebecaab4a2" > QSESpeciesIndices< / a > .empty()) {< / div >
< div class = "line" > < a id = "l00214" name = "l00214" > < / a > < span class = "lineno" > 214< / span > LOG_DEBUG(< a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7" > m_logger< / a > , < span class = "stringliteral" > " No QSE species to solve for." < / span > );< / div >
< div class = "line" > < a id = "l00215" name = "l00215" > < / a > < span class = "lineno" > 215< / span > < span class = "keywordflow" > return< / span > Eigen::VectorXd(0);< / div >
< div class = "line" > < a id = "l00216" name = "l00216" > < / a > < span class = "lineno" > 216< / span > }< / div >
< div class = "line" > < a id = "l00217" name = "l00217" > < / a > < span class = "lineno" > 217< / span > < span class = "comment" > // Use the EigenFunctor with Eigen' s nonlinear solver< / span > < / div >
< div class = "line" > < a id = "l00218" name = "l00218" > < / a > < span class = "lineno" > 218< / span > < a class = "code hl_struct" href = "structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html" > EigenFunctor< double> < / a > functor(< / div >
< div class = "line" > < a id = "l00219" name = "l00219" > < / a > < span class = "lineno" > 219< / span > < a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8" > m_engine< / a > ,< / div >
< div class = "line" > < a id = "l00220" name = "l00220" > < / a > < span class = "lineno" > 220< / span > Y,< / div >
< div class = "line" > < a id = "l00221" name = "l00221" > < / a > < span class = "lineno" > 221< / span > indices.< a class = "code hl_variable" href = "structgridfire_1_1solver_1_1dynamic_q_s_e_species_indices.html#ac6e0419abdd3c78b32e34c16c0543157" > dynamicSpeciesIndices< / a > ,< / div >
< div class = "line" > < a id = "l00222" name = "l00222" > < / a > < span class = "lineno" > 222< / span > indices.< a class = "code hl_variable" href = "structgridfire_1_1solver_1_1dynamic_q_s_e_species_indices.html#a7d4ba82d9e60a4914938ebebecaab4a2" > QSESpeciesIndices< / a > ,< / div >
< div class = "line" > < a id = "l00223" name = "l00223" > < / a > < span class = "lineno" > 223< / span > T9,< / div >
< div class = "line" > < a id = "l00224" name = "l00224" > < / a > < span class = "lineno" > 224< / span > rho< / div >
< div class = "line" > < a id = "l00225" name = "l00225" > < / a > < span class = "lineno" > 225< / span > );< / div >
< div class = "line" > < a id = "l00226" name = "l00226" > < / a > < span class = "lineno" > 226< / span > < / div >
< div class = "line" > < a id = "l00227" name = "l00227" > < / a > < span class = "lineno" > 227< / span > Eigen::VectorXd v_qse_log_initial(indices.< a class = "code hl_variable" href = "structgridfire_1_1solver_1_1dynamic_q_s_e_species_indices.html#a7d4ba82d9e60a4914938ebebecaab4a2" > QSESpeciesIndices< / a > .size());< / div >
< div class = "line" > < a id = "l00228" name = "l00228" > < / a > < span class = "lineno" > 228< / span > < span class = "keywordflow" > for< / span > (< span class = "keywordtype" > size_t< / span > i = 0; i < indices.< a class = "code hl_variable" href = "structgridfire_1_1solver_1_1dynamic_q_s_e_species_indices.html#a7d4ba82d9e60a4914938ebebecaab4a2" > QSESpeciesIndices< / a > .size(); ++i) {< / div >
< div class = "line" > < a id = "l00229" name = "l00229" > < / a > < span class = "lineno" > 229< / span > v_qse_log_initial(i) = std::log(std::max(Y[indices.< a class = "code hl_variable" href = "structgridfire_1_1solver_1_1dynamic_q_s_e_species_indices.html#a7d4ba82d9e60a4914938ebebecaab4a2" > QSESpeciesIndices< / a > [i]], 1e-99));< / div >
< div class = "line" > < a id = "l00230" name = "l00230" > < / a > < span class = "lineno" > 230< / span > }< / div >
< div class = "line" > < a id = "l00231" name = "l00231" > < / a > < span class = "lineno" > 231< / span > < / div >
< div class = "line" > < a id = "l00232" name = "l00232" > < / a > < span class = "lineno" > 232< / span > < span class = "keyword" > const< / span > < span class = "keyword" > static< / span > std::unordered_map< Eigen::LevenbergMarquardtSpace::Status, const char*> statusMessages = {< / div >
< div class = "line" > < a id = "l00233" name = "l00233" > < / a > < span class = "lineno" > 233< / span > {Eigen::LevenbergMarquardtSpace::NotStarted, < span class = "stringliteral" > " Not started" < / span > },< / div >
< div class = "line" > < a id = "l00234" name = "l00234" > < / a > < span class = "lineno" > 234< / span > {Eigen::LevenbergMarquardtSpace::Running, < span class = "stringliteral" > " Running" < / span > },< / div >
< div class = "line" > < a id = "l00235" name = "l00235" > < / a > < span class = "lineno" > 235< / span > {Eigen::LevenbergMarquardtSpace::ImproperInputParameters, < span class = "stringliteral" > " Improper input parameters" < / span > },< / div >
< div class = "line" > < a id = "l00236" name = "l00236" > < / a > < span class = "lineno" > 236< / span > {Eigen::LevenbergMarquardtSpace::RelativeReductionTooSmall, < span class = "stringliteral" > " Relative reduction too small" < / span > },< / div >
< div class = "line" > < a id = "l00237" name = "l00237" > < / a > < span class = "lineno" > 237< / span > {Eigen::LevenbergMarquardtSpace::RelativeErrorTooSmall, < span class = "stringliteral" > " Relative error too small" < / span > },< / div >
< div class = "line" > < a id = "l00238" name = "l00238" > < / a > < span class = "lineno" > 238< / span > {Eigen::LevenbergMarquardtSpace::RelativeErrorAndReductionTooSmall, < span class = "stringliteral" > " Relative error and reduction too small" < / span > },< / div >
< div class = "line" > < a id = "l00239" name = "l00239" > < / a > < span class = "lineno" > 239< / span > {Eigen::LevenbergMarquardtSpace::CosinusTooSmall, < span class = "stringliteral" > " Cosine too small" < / span > },< / div >
< div class = "line" > < a id = "l00240" name = "l00240" > < / a > < span class = "lineno" > 240< / span > {Eigen::LevenbergMarquardtSpace::TooManyFunctionEvaluation, < span class = "stringliteral" > " Too many function evaluations" < / span > },< / div >
< div class = "line" > < a id = "l00241" name = "l00241" > < / a > < span class = "lineno" > 241< / span > {Eigen::LevenbergMarquardtSpace::FtolTooSmall, < span class = "stringliteral" > " Function tolerance too small" < / span > },< / div >
< div class = "line" > < a id = "l00242" name = "l00242" > < / a > < span class = "lineno" > 242< / span > {Eigen::LevenbergMarquardtSpace::XtolTooSmall, < span class = "stringliteral" > " X tolerance too small" < / span > },< / div >
< div class = "line" > < a id = "l00243" name = "l00243" > < / a > < span class = "lineno" > 243< / span > {Eigen::LevenbergMarquardtSpace::GtolTooSmall, < span class = "stringliteral" > " Gradient tolerance too small" < / span > },< / div >
< div class = "line" > < a id = "l00244" name = "l00244" > < / a > < span class = "lineno" > 244< / span > {Eigen::LevenbergMarquardtSpace::UserAsked, < span class = "stringliteral" > " User asked to stop" < / span > }< / div >
< div class = "line" > < a id = "l00245" name = "l00245" > < / a > < span class = "lineno" > 245< / span > };< / div >
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< div class = "line" > < a id = "l00246" name = "l00246" > < / a > < span class = "lineno" > 246< / span > < / div >
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< div class = "line" > < a id = "l00247" name = "l00247" > < / a > < span class = "lineno" > 247< / span > Eigen::LevenbergMarquardt lm(functor);< / div >
< div class = "line" > < a id = "l00248" name = "l00248" > < / a > < span class = "lineno" > 248< / span > < span class = "keyword" > const< / span > Eigen::LevenbergMarquardtSpace::Status info = lm.minimize(v_qse_log_initial);< / div >
< div class = "line" > < a id = "l00249" name = "l00249" > < / a > < span class = "lineno" > 249< / span > < / div >
< div class = "line" > < a id = "l00250" name = "l00250" > < / a > < span class = "lineno" > 250< / span > < span class = "keywordflow" > if< / span > (info < = 0 || info > = 4) {< / div >
< div class = "line" > < a id = "l00251" name = "l00251" > < / a > < span class = "lineno" > 251< / span > LOG_ERROR(< a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7" > m_logger< / a > , < span class = "stringliteral" > " QSE species minimization failed with status: {} ({})" < / span > ,< / div >
< div class = "line" > < a id = "l00252" name = "l00252" > < / a > < span class = "lineno" > 252< / span > < span class = "keyword" > static_cast< < / span > < span class = "keywordtype" > int< / span > < span class = "keyword" > > < / span > (info), statusMessages.at(info));< / div >
< div class = "line" > < a id = "l00253" name = "l00253" > < / a > < span class = "lineno" > 253< / span > < span class = "keywordflow" > throw< / span > std::runtime_error(< / div >
< div class = "line" > < a id = "l00254" name = "l00254" > < / a > < span class = "lineno" > 254< / span > < span class = "stringliteral" > " QSE species minimization failed with status: " < / span > + std::to_string(< span class = "keyword" > static_cast< < / span > < span class = "keywordtype" > int< / span > < span class = "keyword" > > < / span > (info)) +< / div >
< div class = "line" > < a id = "l00255" name = "l00255" > < / a > < span class = "lineno" > 255< / span > < span class = "stringliteral" > " (" < / span > + std::string(statusMessages.at(info)) + < span class = "stringliteral" > " )" < / span > < / div >
< div class = "line" > < a id = "l00256" name = "l00256" > < / a > < span class = "lineno" > 256< / span > );< / div >
< div class = "line" > < a id = "l00257" name = "l00257" > < / a > < span class = "lineno" > 257< / span > }< / div >
< div class = "line" > < a id = "l00258" name = "l00258" > < / a > < span class = "lineno" > 258< / span > LOG_DEBUG(< a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7" > m_logger< / a > , < span class = "stringliteral" > " QSE species minimization completed successfully with status: {} ({})" < / span > ,< / div >
< div class = "line" > < a id = "l00259" name = "l00259" > < / a > < span class = "lineno" > 259< / span > < span class = "keyword" > static_cast< < / span > < span class = "keywordtype" > int< / span > < span class = "keyword" > > < / span > (info), statusMessages.at(info));< / div >
< div class = "line" > < a id = "l00260" name = "l00260" > < / a > < span class = "lineno" > 260< / span > < span class = "keywordflow" > return< / span > v_qse_log_initial.array().exp();< / div >
< div class = "line" > < a id = "l00261" name = "l00261" > < / a > < span class = "lineno" > 261< / span > < / div >
< div class = "line" > < a id = "l00262" name = "l00262" > < / a > < span class = "lineno" > 262< / span > }< / div >
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< / div >
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< div class = "line" > < a id = "l00263" name = "l00263" > < / a > < span class = "lineno" > 263< / span > < / div >
< div class = "foldopen" id = "foldopen00264" data-start = "{" data-end = "}" >
< div class = "line" > < a id = "l00264" name = "l00264" > < / a > < span class = "lineno" > < a class = "line" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#abaa567001df0007b714f474febae408b" > 264< / a > < / span > < a class = "code hl_struct" href = "structgridfire_1_1_net_out.html" > NetOut< / a > < a class = "code hl_function" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#abaa567001df0007b714f474febae408b" > QSENetworkSolver::initializeNetworkWithShortIgnition< / a > (< span class = "keyword" > const< / span > < a class = "code hl_struct" href = "structgridfire_1_1_net_in.html" > NetIn< / a > & netIn)< span class = "keyword" > const < / span > {< / div >
< div class = "line" > < a id = "l00265" name = "l00265" > < / a > < span class = "lineno" > 265< / span > < span class = "keyword" > const< / span > < span class = "keyword" > auto< / span > ignitionTemperature = < a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a7d19b6e50db34d38c81afec76bbedee1" > m_config< / a > .get< < span class = "keywordtype" > double< / span > > (< / div >
< div class = "line" > < a id = "l00266" name = "l00266" > < / a > < span class = "lineno" > 266< / span > < span class = "stringliteral" > " gridfire:solver:QSE:ignition:temperature" < / span > ,< / div >
< div class = "line" > < a id = "l00267" name = "l00267" > < / a > < span class = "lineno" > 267< / span > 2e8< / div >
< div class = "line" > < a id = "l00268" name = "l00268" > < / a > < span class = "lineno" > 268< / span > ); < span class = "comment" > // 0.2 GK< / span > < / div >
< div class = "line" > < a id = "l00269" name = "l00269" > < / a > < span class = "lineno" > 269< / span > < span class = "keyword" > const< / span > < span class = "keyword" > auto< / span > ignitionDensity = < a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a7d19b6e50db34d38c81afec76bbedee1" > m_config< / a > .get< < span class = "keywordtype" > double< / span > > (< / div >
< div class = "line" > < a id = "l00270" name = "l00270" > < / a > < span class = "lineno" > 270< / span > < span class = "stringliteral" > " gridfire:solver:QSE:ignition:density" < / span > ,< / div >
< div class = "line" > < a id = "l00271" name = "l00271" > < / a > < span class = "lineno" > 271< / span > 1e6< / div >
< div class = "line" > < a id = "l00272" name = "l00272" > < / a > < span class = "lineno" > 272< / span > ); < span class = "comment" > // 1e6 g/cm^3< / span > < / div >
< div class = "line" > < a id = "l00273" name = "l00273" > < / a > < span class = "lineno" > 273< / span > < span class = "keyword" > const< / span > < span class = "keyword" > auto< / span > ignitionTime = < a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a7d19b6e50db34d38c81afec76bbedee1" > m_config< / a > .get< < span class = "keywordtype" > double< / span > > (< / div >
< div class = "line" > < a id = "l00274" name = "l00274" > < / a > < span class = "lineno" > 274< / span > < span class = "stringliteral" > " gridfire:solver:QSE:ignition:tMax" < / span > ,< / div >
< div class = "line" > < a id = "l00275" name = "l00275" > < / a > < span class = "lineno" > 275< / span > 1e-7< / div >
< div class = "line" > < a id = "l00276" name = "l00276" > < / a > < span class = "lineno" > 276< / span > ); < span class = "comment" > // 0.1 μs< / span > < / div >
< div class = "line" > < a id = "l00277" name = "l00277" > < / a > < span class = "lineno" > 277< / span > < span class = "keyword" > const< / span > < span class = "keyword" > auto< / span > ignitionStepSize = < a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a7d19b6e50db34d38c81afec76bbedee1" > m_config< / a > .get< < span class = "keywordtype" > double< / span > > (< / div >
< div class = "line" > < a id = "l00278" name = "l00278" > < / a > < span class = "lineno" > 278< / span > < span class = "stringliteral" > " gridfire:solver:QSE:ignition:dt0" < / span > ,< / div >
< div class = "line" > < a id = "l00279" name = "l00279" > < / a > < span class = "lineno" > 279< / span > 1e-15< / div >
< div class = "line" > < a id = "l00280" name = "l00280" > < / a > < span class = "lineno" > 280< / span > ); < span class = "comment" > // 1e-15 seconds< / span > < / div >
< div class = "line" > < a id = "l00281" name = "l00281" > < / a > < span class = "lineno" > 281< / span > < / div >
< div class = "line" > < a id = "l00282" name = "l00282" > < / a > < span class = "lineno" > 282< / span > LOG_INFO(< / div >
< div class = "line" > < a id = "l00283" name = "l00283" > < / a > < span class = "lineno" > 283< / span > < a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7" > m_logger< / a > ,< / div >
< div class = "line" > < a id = "l00284" name = "l00284" > < / a > < span class = "lineno" > 284< / span > < span class = "stringliteral" > " Igniting network with T={:< 5.3E}, ρ < 5.3E}, tMax={:< 5.3E}, dt0={:< 5.3E}..." < / span > ,< / div >
< div class = "line" > < a id = "l00285" name = "l00285" > < / a > < span class = "lineno" > 285< / span > ignitionTemperature,< / div >
< div class = "line" > < a id = "l00286" name = "l00286" > < / a > < span class = "lineno" > 286< / span > ignitionDensity,< / div >
< div class = "line" > < a id = "l00287" name = "l00287" > < / a > < span class = "lineno" > 287< / span > ignitionTime,< / div >
< div class = "line" > < a id = "l00288" name = "l00288" > < / a > < span class = "lineno" > 288< / span > ignitionStepSize< / div >
< div class = "line" > < a id = "l00289" name = "l00289" > < / a > < span class = "lineno" > 289< / span > );< / div >
< div class = "line" > < a id = "l00290" name = "l00290" > < / a > < span class = "lineno" > 290< / span > < / div >
< div class = "line" > < a id = "l00291" name = "l00291" > < / a > < span class = "lineno" > 291< / span > < a class = "code hl_struct" href = "structgridfire_1_1_net_in.html" > NetIn< / a > preIgnition = netIn;< / div >
< div class = "line" > < a id = "l00292" name = "l00292" > < / a > < span class = "lineno" > 292< / span > preIgnition.< a class = "code hl_variable" href = "structgridfire_1_1_net_in.html#a5be0f5195a5cd1dd177b9fc5ab83a7be" > temperature< / a > = ignitionTemperature;< / div >
< div class = "line" > < a id = "l00293" name = "l00293" > < / a > < span class = "lineno" > 293< / span > preIgnition.< a class = "code hl_variable" href = "structgridfire_1_1_net_in.html#a06f0dff9f8927b7cf2da3004c8fa1577" > density< / a > = ignitionDensity;< / div >
< div class = "line" > < a id = "l00294" name = "l00294" > < / a > < span class = "lineno" > 294< / span > preIgnition.< a class = "code hl_variable" href = "structgridfire_1_1_net_in.html#a0a8d820cfeaa92ee31f253795c57e0d1" > tMax< / a > = ignitionTime;< / div >
< div class = "line" > < a id = "l00295" name = "l00295" > < / a > < span class = "lineno" > 295< / span > preIgnition.< a class = "code hl_variable" href = "structgridfire_1_1_net_in.html#a4e556f7bb18f46654b3445476734076a" > dt0< / a > = ignitionStepSize;< / div >
< div class = "line" > < a id = "l00296" name = "l00296" > < / a > < span class = "lineno" > 296< / span > < / div >
< div class = "line" > < a id = "l00297" name = "l00297" > < / a > < span class = "lineno" > 297< / span > < span class = "keyword" > const< / span > < span class = "keyword" > auto< / span > prevScreeningModel = < a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8" > m_engine< / a > .getScreeningModel();< / div >
< div class = "line" > < a id = "l00298" name = "l00298" > < / a > < span class = "lineno" > 298< / span > LOG_DEBUG(< a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7" > m_logger< / a > , < span class = "stringliteral" > " Setting screening model to BARE for high temperature and density ignition." < / span > );< / div >
< div class = "line" > < a id = "l00299" name = "l00299" > < / a > < span class = "lineno" > 299< / span > < a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8" > m_engine< / a > .setScreeningModel(< a class = "code hl_enumvalue" href = "namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25ad80b95b1abb9c8659fa4cc9d3d29bb71" > screening::ScreeningType::BARE< / a > );< / div >
< div class = "line" > < a id = "l00300" name = "l00300" > < / a > < span class = "lineno" > 300< / span > < a class = "code hl_class" href = "classgridfire_1_1solver_1_1_direct_network_solver.html" > DirectNetworkSolver< / a > ignitionSolver(< a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8" > m_engine< / a > );< / div >
< div class = "line" > < a id = "l00301" name = "l00301" > < / a > < span class = "lineno" > 301< / span > < a class = "code hl_struct" href = "structgridfire_1_1_net_out.html" > NetOut< / a > postIgnition = ignitionSolver.< a class = "code hl_function" href = "classgridfire_1_1solver_1_1_direct_network_solver.html#a0e8a4b8ef656e0b084d11bea982e412a" > evaluate< / a > (preIgnition);< / div >
< div class = "line" > < a id = "l00302" name = "l00302" > < / a > < span class = "lineno" > 302< / span > LOG_INFO(< a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7" > m_logger< / a > , < span class = "stringliteral" > " Network ignition completed in {} steps." < / span > , postIgnition.< a class = "code hl_variable" href = "structgridfire_1_1_net_out.html#a51c16703132cf739ec2fd89eae7badd6" > num_steps< / a > );< / div >
< div class = "line" > < a id = "l00303" name = "l00303" > < / a > < span class = "lineno" > 303< / span > < a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8" > m_engine< / a > .setScreeningModel(prevScreeningModel);< / div >
< div class = "line" > < a id = "l00304" name = "l00304" > < / a > < span class = "lineno" > 304< / span > LOG_DEBUG(< a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7" > m_logger< / a > , < span class = "stringliteral" > " Restoring previous screening model: {}" < / span > , < span class = "keyword" > static_cast< < / span > < span class = "keywordtype" > int< / span > < span class = "keyword" > > < / span > (prevScreeningModel));< / div >
< div class = "line" > < a id = "l00305" name = "l00305" > < / a > < span class = "lineno" > 305< / span > < span class = "keywordflow" > return< / span > postIgnition;< / div >
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< div class = "line" > < a id = "l00306" name = "l00306" > < / a > < span class = "lineno" > 306< / span > }< / div >
< / div >
< div class = "line" > < a id = "l00307" name = "l00307" > < / a > < span class = "lineno" > 307< / span > < / div >
< div class = "foldopen" id = "foldopen00308" data-start = "{" data-end = "}" >
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< div class = "line" > < a id = "l00308" name = "l00308" > < / a > < span class = "lineno" > < a class = "line" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a35f1f6ede393f15c8bb8862f3f1c3b07" > 308< / a > < / span > < span class = "keywordtype" > bool< / span > < a class = "code hl_function" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a35f1f6ede393f15c8bb8862f3f1c3b07" > QSENetworkSolver::shouldUpdateView< / a > (< span class = "keyword" > const< / span > < a class = "code hl_struct" href = "structgridfire_1_1_net_in.html" > NetIn< / a > & conditions)< span class = "keyword" > const < / span > {< / div >
< div class = "line" > < a id = "l00309" name = "l00309" > < / a > < span class = "lineno" > 309< / span > < span class = "comment" > // Policy 1: If the view has never been initialized, we must update.< / span > < / div >
< div class = "line" > < a id = "l00310" name = "l00310" > < / a > < span class = "lineno" > 310< / span > < span class = "keywordflow" > if< / span > (!< a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#ab07e68fd418ab058f890502d191b3f18" > m_isViewInitialized< / a > ) {< / div >
< div class = "line" > < a id = "l00311" name = "l00311" > < / a > < span class = "lineno" > 311< / span > < span class = "keywordflow" > return< / span > < span class = "keyword" > true< / span > ;< / div >
< div class = "line" > < a id = "l00312" name = "l00312" > < / a > < span class = "lineno" > 312< / span > }< / div >
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< div class = "line" > < a id = "l00313" name = "l00313" > < / a > < span class = "lineno" > 313< / span > < / div >
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< div class = "line" > < a id = "l00314" name = "l00314" > < / a > < span class = "lineno" > 314< / span > < span class = "comment" > // Policy 2: Check for significant relative change in temperature.< / span > < / div >
< div class = "line" > < a id = "l00315" name = "l00315" > < / a > < span class = "lineno" > 315< / span > < span class = "comment" > // Reaction rates are exponentially sensitive to temperature, so we use a tight threshold.< / span > < / div >
< div class = "line" > < a id = "l00316" name = "l00316" > < / a > < span class = "lineno" > 316< / span > < span class = "keyword" > const< / span > < span class = "keywordtype" > double< / span > temp_threshold = < a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a7d19b6e50db34d38c81afec76bbedee1" > m_config< / a > .get< < span class = "keywordtype" > double< / span > > (< span class = "stringliteral" > " gridfire:solver:policy:temp_threshold" < / span > , 0.05); < span class = "comment" > // 5%< / span > < / div >
< div class = "line" > < a id = "l00317" name = "l00317" > < / a > < span class = "lineno" > 317< / span > < span class = "keyword" > const< / span > < span class = "keywordtype" > double< / span > temp_relative_change = std::abs(conditions.< a class = "code hl_variable" href = "structgridfire_1_1_net_in.html#a5be0f5195a5cd1dd177b9fc5ab83a7be" > temperature< / a > - < a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a3c9d46c8f5c519854cd65309a588772f" > m_lastSeenConditions< / a > .temperature) / < a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a3c9d46c8f5c519854cd65309a588772f" > m_lastSeenConditions< / a > .temperature;< / div >
< div class = "line" > < a id = "l00318" name = "l00318" > < / a > < span class = "lineno" > 318< / span > < span class = "keywordflow" > if< / span > (temp_relative_change > temp_threshold) {< / div >
< div class = "line" > < a id = "l00319" name = "l00319" > < / a > < span class = "lineno" > 319< / span > LOG_DEBUG(< a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7" > m_logger< / a > , < span class = "stringliteral" > " Temperature changed by {:.1f}%, triggering view update." < / span > , temp_relative_change * 100);< / div >
< div class = "line" > < a id = "l00320" name = "l00320" > < / a > < span class = "lineno" > 320< / span > < span class = "keywordflow" > return< / span > < span class = "keyword" > true< / span > ;< / div >
< div class = "line" > < a id = "l00321" name = "l00321" > < / a > < span class = "lineno" > 321< / span > }< / div >
< div class = "line" > < a id = "l00322" name = "l00322" > < / a > < span class = "lineno" > 322< / span > < / div >
< div class = "line" > < a id = "l00323" name = "l00323" > < / a > < span class = "lineno" > 323< / span > < span class = "comment" > // Policy 3: Check for significant relative change in density.< / span > < / div >
< div class = "line" > < a id = "l00324" name = "l00324" > < / a > < span class = "lineno" > 324< / span > < span class = "keyword" > const< / span > < span class = "keywordtype" > double< / span > rho_threshold = < a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a7d19b6e50db34d38c81afec76bbedee1" > m_config< / a > .get< < span class = "keywordtype" > double< / span > > (< span class = "stringliteral" > " gridfire:solver:policy:rho_threshold" < / span > , 0.10); < span class = "comment" > // 10%< / span > < / div >
< div class = "line" > < a id = "l00325" name = "l00325" > < / a > < span class = "lineno" > 325< / span > < span class = "keyword" > const< / span > < span class = "keywordtype" > double< / span > rho_relative_change = std::abs(conditions.< a class = "code hl_variable" href = "structgridfire_1_1_net_in.html#a06f0dff9f8927b7cf2da3004c8fa1577" > density< / a > - < a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a3c9d46c8f5c519854cd65309a588772f" > m_lastSeenConditions< / a > .density) / < a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a3c9d46c8f5c519854cd65309a588772f" > m_lastSeenConditions< / a > .density;< / div >
< div class = "line" > < a id = "l00326" name = "l00326" > < / a > < span class = "lineno" > 326< / span > < span class = "keywordflow" > if< / span > (rho_relative_change > rho_threshold) {< / div >
< div class = "line" > < a id = "l00327" name = "l00327" > < / a > < span class = "lineno" > 327< / span > LOG_DEBUG(< a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7" > m_logger< / a > , < span class = "stringliteral" > " Density changed by {:.1f}%, triggering view update." < / span > , rho_relative_change * 100);< / div >
< div class = "line" > < a id = "l00328" name = "l00328" > < / a > < span class = "lineno" > 328< / span > < span class = "keywordflow" > return< / span > < span class = "keyword" > true< / span > ;< / div >
< div class = "line" > < a id = "l00329" name = "l00329" > < / a > < span class = "lineno" > 329< / span > }< / div >
< div class = "line" > < a id = "l00330" name = "l00330" > < / a > < span class = "lineno" > 330< / span > < / div >
< div class = "line" > < a id = "l00331" name = "l00331" > < / a > < span class = "lineno" > 331< / span > < span class = "comment" > // Policy 4: Check for fuel depletion.< / span > < / div >
< div class = "line" > < a id = "l00332" name = "l00332" > < / a > < span class = "lineno" > 332< / span > < span class = "comment" > // If a primary fuel source changes significantly, the network structure may change.< / span > < / div >
< div class = "line" > < a id = "l00333" name = "l00333" > < / a > < span class = "lineno" > 333< / span > < span class = "keyword" > const< / span > < span class = "keywordtype" > double< / span > fuel_threshold = < a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a7d19b6e50db34d38c81afec76bbedee1" > m_config< / a > .get< < span class = "keywordtype" > double< / span > > (< span class = "stringliteral" > " gridfire:solver:policy:fuel_threshold" < / span > , 0.15); < span class = "comment" > // 15%< / span > < / div >
< div class = "line" > < a id = "l00334" name = "l00334" > < / a > < span class = "lineno" > 334< / span > < / div >
< div class = "line" > < a id = "l00335" name = "l00335" > < / a > < span class = "lineno" > 335< / span > < span class = "comment" > // Example: Check hydrogen abundance< / span > < / div >
< div class = "line" > < a id = "l00336" name = "l00336" > < / a > < span class = "lineno" > 336< / span > < span class = "keyword" > const< / span > < span class = "keywordtype" > double< / span > h1_old = < a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a3c9d46c8f5c519854cd65309a588772f" > m_lastSeenConditions< / a > .composition.getMassFraction(< span class = "stringliteral" > " H-1" < / span > );< / div >
< div class = "line" > < a id = "l00337" name = "l00337" > < / a > < span class = "lineno" > 337< / span > < span class = "keyword" > const< / span > < span class = "keywordtype" > double< / span > h1_new = conditions.< a class = "code hl_variable" href = "structgridfire_1_1_net_in.html#a13058f4929e72c1187abbebcddb8aed1" > composition< / a > .getMassFraction(< span class = "stringliteral" > " H-1" < / span > );< / div >
< div class = "line" > < a id = "l00338" name = "l00338" > < / a > < span class = "lineno" > 338< / span > < span class = "keywordflow" > if< / span > (h1_old > 1e-12) { < span class = "comment" > // Avoid division by zero< / span > < / div >
< div class = "line" > < a id = "l00339" name = "l00339" > < / a > < span class = "lineno" > 339< / span > < span class = "keyword" > const< / span > < span class = "keywordtype" > double< / span > h1_relative_change = std::abs(h1_new - h1_old) / h1_old;< / div >
< div class = "line" > < a id = "l00340" name = "l00340" > < / a > < span class = "lineno" > 340< / span > < span class = "keywordflow" > if< / span > (h1_relative_change > fuel_threshold) {< / div >
< div class = "line" > < a id = "l00341" name = "l00341" > < / a > < span class = "lineno" > 341< / span > LOG_DEBUG(< a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7" > m_logger< / a > , < span class = "stringliteral" > " H-1 mass fraction changed by {:.1f}%, triggering view update." < / span > , h1_relative_change * 100);< / div >
< div class = "line" > < a id = "l00342" name = "l00342" > < / a > < span class = "lineno" > 342< / span > < span class = "keywordflow" > return< / span > < span class = "keyword" > true< / span > ;< / div >
< div class = "line" > < a id = "l00343" name = "l00343" > < / a > < span class = "lineno" > 343< / span > }< / div >
< div class = "line" > < a id = "l00344" name = "l00344" > < / a > < span class = "lineno" > 344< / span > }< / div >
< div class = "line" > < a id = "l00345" name = "l00345" > < / a > < span class = "lineno" > 345< / span > < / div >
< div class = "line" > < a id = "l00346" name = "l00346" > < / a > < span class = "lineno" > 346< / span > < span class = "comment" > // If none of the above conditions are met, the current view is still good enough.< / span > < / div >
< div class = "line" > < a id = "l00347" name = "l00347" > < / a > < span class = "lineno" > 347< / span > < span class = "keywordflow" > return< / span > < span class = "keyword" > false< / span > ;< / div >
< div class = "line" > < a id = "l00348" name = "l00348" > < / a > < span class = "lineno" > 348< / span > }< / div >
< / div >
< div class = "line" > < a id = "l00349" name = "l00349" > < / a > < span class = "lineno" > 349< / span > < / div >
< div class = "foldopen" id = "foldopen00350" data-start = "{" data-end = "}" >
< div class = "line" > < a id = "l00350" name = "l00350" > < / a > < span class = "lineno" > < a class = "line" href = "structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#ae0b6362d9c0a14e69c7a47233db6a86a" > 350< / a > < / span > < span class = "keywordtype" > void< / span > < a class = "code hl_function" href = "structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#ae0b6362d9c0a14e69c7a47233db6a86a" > QSENetworkSolver::RHSFunctor::operator()< / a > (< / div >
< div class = "line" > < a id = "l00351" name = "l00351" > < / a > < span class = "lineno" > 351< / span > < span class = "keyword" > const< / span > boost::numeric::ublas::vector< double> & YDynamic,< / div >
< div class = "line" > < a id = "l00352" name = "l00352" > < / a > < span class = "lineno" > 352< / span > boost::numeric::ublas::vector< double> & dYdtDynamic,< / div >
< div class = "line" > < a id = "l00353" name = "l00353" > < / a > < span class = "lineno" > 353< / span > < span class = "keywordtype" > double< / span > t< / div >
< div class = "line" > < a id = "l00354" name = "l00354" > < / a > < span class = "lineno" > 354< / span > )< span class = "keyword" > const < / span > {< / div >
< div class = "line" > < a id = "l00355" name = "l00355" > < / a > < span class = "lineno" > 355< / span > < span class = "comment" > // --- Populate the slow / dynamic species vector ---< / span > < / div >
< div class = "line" > < a id = "l00356" name = "l00356" > < / a > < span class = "lineno" > 356< / span > std::vector< double> YFull(< a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#a0d8d28a6559cfed5e7cd683523d49b2c" > m_engine< / a > .getNetworkSpecies().size());< / div >
< div class = "line" > < a id = "l00357" name = "l00357" > < / a > < span class = "lineno" > 357< / span > < span class = "keywordflow" > for< / span > (< span class = "keywordtype" > size_t< / span > i = 0; i < < a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#a3ac1ef529627d21f7d1ad718dc87f7f9" > m_dynamicSpeciesIndices< / a > .size(); ++i) {< / div >
< div class = "line" > < a id = "l00358" name = "l00358" > < / a > < span class = "lineno" > 358< / span > YFull[< a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#a3ac1ef529627d21f7d1ad718dc87f7f9" > m_dynamicSpeciesIndices< / a > [i]] = YDynamic(i);< / div >
< div class = "line" > < a id = "l00359" name = "l00359" > < / a > < span class = "lineno" > 359< / span > }< / div >
< div class = "line" > < a id = "l00360" name = "l00360" > < / a > < span class = "lineno" > 360< / span > < / div >
< div class = "line" > < a id = "l00361" name = "l00361" > < / a > < span class = "lineno" > 361< / span > < span class = "comment" > // --- Populate the QSE species vector ---< / span > < / div >
< div class = "line" > < a id = "l00362" name = "l00362" > < / a > < span class = "lineno" > 362< / span > < span class = "keywordflow" > for< / span > (< span class = "keywordtype" > size_t< / span > i = 0; i < < a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#a6be7259897a47ce480b289144b06e269" > m_QSESpeciesIndices< / a > .size(); ++i) {< / div >
< div class = "line" > < a id = "l00363" name = "l00363" > < / a > < span class = "lineno" > 363< / span > YFull[< a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#a6be7259897a47ce480b289144b06e269" > m_QSESpeciesIndices< / a > [i]] = < a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#a02c23ef20d616bf5a591a274b66cd75a" > m_Y_QSE< / a > (i);< / div >
< div class = "line" > < a id = "l00364" name = "l00364" > < / a > < span class = "lineno" > 364< / span > }< / div >
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< div class = "line" > < a id = "l00365" name = "l00365" > < / a > < span class = "lineno" > 365< / span > < / div >
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< div class = "line" > < a id = "l00366" name = "l00366" > < / a > < span class = "lineno" > 366< / span > < span class = "keyword" > auto< / span > [full_dYdt, specificEnergyRate] = < a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#a0d8d28a6559cfed5e7cd683523d49b2c" > m_engine< / a > .calculateRHSAndEnergy(YFull, < a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#a35026100163c7cc6fdb4c2e4d988b8cb" > m_T9< / a > , < a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#adc0f8e655af42f414dcb220a7224f261" > m_rho< / a > );< / div >
< div class = "line" > < a id = "l00367" name = "l00367" > < / a > < span class = "lineno" > 367< / span > < / div >
< div class = "line" > < a id = "l00368" name = "l00368" > < / a > < span class = "lineno" > 368< / span > dYdtDynamic.resize(< a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#a3ac1ef529627d21f7d1ad718dc87f7f9" > m_dynamicSpeciesIndices< / a > .size() + 1);< / div >
< div class = "line" > < a id = "l00369" name = "l00369" > < / a > < span class = "lineno" > 369< / span > < span class = "keywordflow" > for< / span > (< span class = "keywordtype" > size_t< / span > i = 0; i < < a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#a3ac1ef529627d21f7d1ad718dc87f7f9" > m_dynamicSpeciesIndices< / a > .size(); ++i) {< / div >
< div class = "line" > < a id = "l00370" name = "l00370" > < / a > < span class = "lineno" > 370< / span > dYdtDynamic(i) = full_dYdt[< a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#a3ac1ef529627d21f7d1ad718dc87f7f9" > m_dynamicSpeciesIndices< / a > [i]];< / div >
< div class = "line" > < a id = "l00371" name = "l00371" > < / a > < span class = "lineno" > 371< / span > }< / div >
< div class = "line" > < a id = "l00372" name = "l00372" > < / a > < span class = "lineno" > 372< / span > dYdtDynamic[< a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#a3ac1ef529627d21f7d1ad718dc87f7f9" > m_dynamicSpeciesIndices< / a > .size()] = specificEnergyRate;< / div >
< div class = "line" > < a id = "l00373" name = "l00373" > < / a > < span class = "lineno" > 373< / span > }< / div >
< / div >
< div class = "line" > < a id = "l00374" name = "l00374" > < / a > < span class = "lineno" > 374< / span > < / div >
< div class = "foldopen" id = "foldopen00375" data-start = "{" data-end = "}" >
< div class = "line" > < a id = "l00375" name = "l00375" > < / a > < span class = "lineno" > < a class = "line" href = "classgridfire_1_1solver_1_1_direct_network_solver.html#a0e8a4b8ef656e0b084d11bea982e412a" > 375< / a > < / span > < a class = "code hl_struct" href = "structgridfire_1_1_net_out.html" > NetOut< / a > < a class = "code hl_function" href = "classgridfire_1_1solver_1_1_direct_network_solver.html#a0e8a4b8ef656e0b084d11bea982e412a" > DirectNetworkSolver::evaluate< / a > (< span class = "keyword" > const< / span > < a class = "code hl_struct" href = "structgridfire_1_1_net_in.html" > NetIn< / a > & netIn) {< / div >
< div class = "line" > < a id = "l00376" name = "l00376" > < / a > < span class = "lineno" > 376< / span > < span class = "keyword" > namespace < / span > ublas = boost::numeric::ublas;< / div >
< div class = "line" > < a id = "l00377" name = "l00377" > < / a > < span class = "lineno" > 377< / span > < span class = "keyword" > namespace < / span > odeint = boost::numeric::odeint;< / div >
< div class = "line" > < a id = "l00378" name = "l00378" > < / a > < span class = "lineno" > 378< / span > < span class = "keyword" > using < / span > fourdst::composition::Composition;< / div >
< div class = "line" > < a id = "l00379" name = "l00379" > < / a > < span class = "lineno" > 379< / span > < / div >
< div class = "line" > < a id = "l00380" name = "l00380" > < / a > < span class = "lineno" > 380< / span > < / div >
< div class = "line" > < a id = "l00381" name = "l00381" > < / a > < span class = "lineno" > 381< / span > < span class = "keyword" > const< / span > < span class = "keywordtype" > double< / span > T9 = netIn.< a class = "code hl_variable" href = "structgridfire_1_1_net_in.html#a5be0f5195a5cd1dd177b9fc5ab83a7be" > temperature< / a > / 1e9; < span class = "comment" > // Convert temperature from Kelvin to T9 (T9 = T / 1e9)< / span > < / div >
< div class = "line" > < a id = "l00382" name = "l00382" > < / a > < span class = "lineno" > 382< / span > < span class = "keyword" > const< / span > < span class = "keywordtype" > unsigned< / span > < span class = "keywordtype" > long< / span > numSpecies = < a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8" > m_engine< / a > .getNetworkSpecies().size();< / div >
< div class = "line" > < a id = "l00383" name = "l00383" > < / a > < span class = "lineno" > 383< / span > < / div >
< div class = "line" > < a id = "l00384" name = "l00384" > < / a > < span class = "lineno" > 384< / span > < span class = "keyword" > const< / span > < span class = "keyword" > auto< / span > absTol = < a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_direct_network_solver.html#a0d1b52d06b0521e7c556d75cd8d2ffe6" > m_config< / a > .get< < span class = "keywordtype" > double< / span > > (< span class = "stringliteral" > " gridfire:solver:DirectNetworkSolver:absTol" < / span > , 1.0e-8);< / div >
< div class = "line" > < a id = "l00385" name = "l00385" > < / a > < span class = "lineno" > 385< / span > < span class = "keyword" > const< / span > < span class = "keyword" > auto< / span > relTol = < a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_direct_network_solver.html#a0d1b52d06b0521e7c556d75cd8d2ffe6" > m_config< / a > .get< < span class = "keywordtype" > double< / span > > (< span class = "stringliteral" > " gridfire:solver:DirectNetworkSolver:relTol" < / span > , 1.0e-8);< / div >
< div class = "line" > < a id = "l00386" name = "l00386" > < / a > < span class = "lineno" > 386< / span > < / div >
< div class = "line" > < a id = "l00387" name = "l00387" > < / a > < span class = "lineno" > 387< / span > < span class = "keywordtype" > size_t< / span > stepCount = 0;< / div >
< div class = "line" > < a id = "l00388" name = "l00388" > < / a > < span class = "lineno" > 388< / span > < / div >
< div class = "line" > < a id = "l00389" name = "l00389" > < / a > < span class = "lineno" > 389< / span > < a class = "code hl_struct" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html" > RHSFunctor< / a > rhsFunctor(< a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8" > m_engine< / a > , T9, netIn.< a class = "code hl_variable" href = "structgridfire_1_1_net_in.html#a06f0dff9f8927b7cf2da3004c8fa1577" > density< / a > );< / div >
< div class = "line" > < a id = "l00390" name = "l00390" > < / a > < span class = "lineno" > 390< / span > < a class = "code hl_struct" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html" > JacobianFunctor< / a > jacobianFunctor(< a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8" > m_engine< / a > , T9, netIn.< a class = "code hl_variable" href = "structgridfire_1_1_net_in.html#a06f0dff9f8927b7cf2da3004c8fa1577" > density< / a > );< / div >
< div class = "line" > < a id = "l00391" name = "l00391" > < / a > < span class = "lineno" > 391< / span > < / div >
< div class = "line" > < a id = "l00392" name = "l00392" > < / a > < span class = "lineno" > 392< / span > ublas::vector< double> Y(numSpecies + 1);< / div >
< div class = "line" > < a id = "l00393" name = "l00393" > < / a > < span class = "lineno" > 393< / span > < / div >
< div class = "line" > < a id = "l00394" name = "l00394" > < / a > < span class = "lineno" > 394< / span > < span class = "keywordflow" > for< / span > (< span class = "keywordtype" > size_t< / span > i = 0; i < numSpecies; ++i) {< / div >
< div class = "line" > < a id = "l00395" name = "l00395" > < / a > < span class = "lineno" > 395< / span > < span class = "keyword" > const< / span > < span class = "keyword" > auto< / span > & species = < a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8" > m_engine< / a > .getNetworkSpecies()[i];< / div >
< div class = "line" > < a id = "l00396" name = "l00396" > < / a > < span class = "lineno" > 396< / span > < span class = "keywordflow" > try< / span > {< / div >
< div class = "line" > < a id = "l00397" name = "l00397" > < / a > < span class = "lineno" > 397< / span > Y(i) = netIn.< a class = "code hl_variable" href = "structgridfire_1_1_net_in.html#a13058f4929e72c1187abbebcddb8aed1" > composition< / a > .getMolarAbundance(std::string(species.name()));< / div >
< div class = "line" > < a id = "l00398" name = "l00398" > < / a > < span class = "lineno" > 398< / span > } < span class = "keywordflow" > catch< / span > (< span class = "keyword" > const< / span > std::runtime_error) {< / div >
< div class = "line" > < a id = "l00399" name = "l00399" > < / a > < span class = "lineno" > 399< / span > LOG_DEBUG(< a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_direct_network_solver.html#a093aa89fd23c2fe03266e286871c7079" > m_logger< / a > , < span class = "stringliteral" > " Species ' {}' not found in composition. Setting abundance to 0.0." < / span > , species.name());< / div >
< div class = "line" > < a id = "l00400" name = "l00400" > < / a > < span class = "lineno" > 400< / span > Y(i) = 0.0;< / div >
< div class = "line" > < a id = "l00401" name = "l00401" > < / a > < span class = "lineno" > 401< / span > }< / div >
< div class = "line" > < a id = "l00402" name = "l00402" > < / a > < span class = "lineno" > 402< / span > }< / div >
< div class = "line" > < a id = "l00403" name = "l00403" > < / a > < span class = "lineno" > 403< / span > Y(numSpecies) = 0.0;< / div >
< div class = "line" > < a id = "l00404" name = "l00404" > < / a > < span class = "lineno" > 404< / span > < / div >
< div class = "line" > < a id = "l00405" name = "l00405" > < / a > < span class = "lineno" > 405< / span > < span class = "keyword" > const< / span > < span class = "keyword" > auto< / span > stepper = odeint::make_controlled< odeint::rosenbrock4< double> > (absTol, relTol);< / div >
< div class = "line" > < a id = "l00406" name = "l00406" > < / a > < span class = "lineno" > 406< / span > stepCount = odeint::integrate_adaptive(< / div >
< div class = "line" > < a id = "l00407" name = "l00407" > < / a > < span class = "lineno" > 407< / span > stepper,< / div >
< div class = "line" > < a id = "l00408" name = "l00408" > < / a > < span class = "lineno" > 408< / span > std::make_pair(rhsFunctor, jacobianFunctor),< / div >
< div class = "line" > < a id = "l00409" name = "l00409" > < / a > < span class = "lineno" > 409< / span > Y,< / div >
< div class = "line" > < a id = "l00410" name = "l00410" > < / a > < span class = "lineno" > 410< / span > 0.0,< / div >
< div class = "line" > < a id = "l00411" name = "l00411" > < / a > < span class = "lineno" > 411< / span > netIn.< a class = "code hl_variable" href = "structgridfire_1_1_net_in.html#a0a8d820cfeaa92ee31f253795c57e0d1" > tMax< / a > ,< / div >
< div class = "line" > < a id = "l00412" name = "l00412" > < / a > < span class = "lineno" > 412< / span > netIn.< a class = "code hl_variable" href = "structgridfire_1_1_net_in.html#a4e556f7bb18f46654b3445476734076a" > dt0< / a > < / div >
< div class = "line" > < a id = "l00413" name = "l00413" > < / a > < span class = "lineno" > 413< / span > );< / div >
< div class = "line" > < a id = "l00414" name = "l00414" > < / a > < span class = "lineno" > 414< / span > < / div >
< div class = "line" > < a id = "l00415" name = "l00415" > < / a > < span class = "lineno" > 415< / span > std::vector< double> finalMassFractions(numSpecies);< / div >
< div class = "line" > < a id = "l00416" name = "l00416" > < / a > < span class = "lineno" > 416< / span > < span class = "keywordflow" > for< / span > (< span class = "keywordtype" > size_t< / span > i = 0; i < numSpecies; ++i) {< / div >
< div class = "line" > < a id = "l00417" name = "l00417" > < / a > < span class = "lineno" > 417< / span > < span class = "keyword" > const< / span > < span class = "keywordtype" > double< / span > molarMass = < a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8" > m_engine< / a > .getNetworkSpecies()[i].mass();< / div >
< div class = "line" > < a id = "l00418" name = "l00418" > < / a > < span class = "lineno" > 418< / span > finalMassFractions[i] = Y(i) * molarMass; < span class = "comment" > // Convert from molar abundance to mass fraction< / span > < / div >
< div class = "line" > < a id = "l00419" name = "l00419" > < / a > < span class = "lineno" > 419< / span > < span class = "keywordflow" > if< / span > (finalMassFractions[i] < < a class = "code hl_variable" href = "namespacegridfire.html#a96c062f94713921e5d7568ecedcdcb06" > MIN_ABUNDANCE_THRESHOLD< / a > ) {< / div >
< div class = "line" > < a id = "l00420" name = "l00420" > < / a > < span class = "lineno" > 420< / span > finalMassFractions[i] = 0.0;< / div >
< div class = "line" > < a id = "l00421" name = "l00421" > < / a > < span class = "lineno" > 421< / span > }< / div >
< div class = "line" > < a id = "l00422" name = "l00422" > < / a > < span class = "lineno" > 422< / span > }< / div >
< div class = "line" > < a id = "l00423" name = "l00423" > < / a > < span class = "lineno" > 423< / span > < / div >
< div class = "line" > < a id = "l00424" name = "l00424" > < / a > < span class = "lineno" > 424< / span > std::vector< std::string> speciesNames;< / div >
< div class = "line" > < a id = "l00425" name = "l00425" > < / a > < span class = "lineno" > 425< / span > speciesNames.reserve(numSpecies);< / div >
< div class = "line" > < a id = "l00426" name = "l00426" > < / a > < span class = "lineno" > 426< / span > < span class = "keywordflow" > for< / span > (< span class = "keyword" > const< / span > < span class = "keyword" > auto< / span > & species : < a class = "code hl_variable" href = "classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8" > m_engine< / a > .getNetworkSpecies()) {< / div >
< div class = "line" > < a id = "l00427" name = "l00427" > < / a > < span class = "lineno" > 427< / span > speciesNames.push_back(std::string(species.name()));< / div >
< div class = "line" > < a id = "l00428" name = "l00428" > < / a > < span class = "lineno" > 428< / span > }< / div >
< div class = "line" > < a id = "l00429" name = "l00429" > < / a > < span class = "lineno" > 429< / span > < / div >
< div class = "line" > < a id = "l00430" name = "l00430" > < / a > < span class = "lineno" > 430< / span > Composition outputComposition(speciesNames);< / div >
< div class = "line" > < a id = "l00431" name = "l00431" > < / a > < span class = "lineno" > 431< / span > outputComposition.setMassFraction(speciesNames, finalMassFractions);< / div >
< div class = "line" > < a id = "l00432" name = "l00432" > < / a > < span class = "lineno" > 432< / span > outputComposition.finalize(< span class = "keyword" > true< / span > );< / div >
< div class = "line" > < a id = "l00433" name = "l00433" > < / a > < span class = "lineno" > 433< / span > < / div >
< div class = "line" > < a id = "l00434" name = "l00434" > < / a > < span class = "lineno" > 434< / span > < a class = "code hl_struct" href = "structgridfire_1_1_net_out.html" > NetOut< / a > netOut;< / div >
< div class = "line" > < a id = "l00435" name = "l00435" > < / a > < span class = "lineno" > 435< / span > netOut.< a class = "code hl_variable" href = "structgridfire_1_1_net_out.html#a073529511ae0e52f868b47cce0e8ac0a" > composition< / a > = std::move(outputComposition);< / div >
< div class = "line" > < a id = "l00436" name = "l00436" > < / a > < span class = "lineno" > 436< / span > netOut.< a class = "code hl_variable" href = "structgridfire_1_1_net_out.html#a43d5a861708992c949f616aa2a035ec6" > energy< / a > = Y(numSpecies); < span class = "comment" > // Specific energy rate< / span > < / div >
< div class = "line" > < a id = "l00437" name = "l00437" > < / a > < span class = "lineno" > 437< / span > netOut.< a class = "code hl_variable" href = "structgridfire_1_1_net_out.html#a51c16703132cf739ec2fd89eae7badd6" > num_steps< / a > = stepCount;< / div >
< div class = "line" > < a id = "l00438" name = "l00438" > < / a > < span class = "lineno" > 438< / span > < / div >
< div class = "line" > < a id = "l00439" name = "l00439" > < / a > < span class = "lineno" > 439< / span > < span class = "keywordflow" > return< / span > netOut;< / div >
< div class = "line" > < a id = "l00440" name = "l00440" > < / a > < span class = "lineno" > 440< / span > }< / div >
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< / div >
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< div class = "line" > < a id = "l00441" name = "l00441" > < / a > < span class = "lineno" > 441< / span > < / div >
< div class = "foldopen" id = "foldopen00442" data-start = "{" data-end = "}" >
< div class = "line" > < a id = "l00442" name = "l00442" > < / a > < span class = "lineno" > < a class = "line" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a3a7542b6c6b4c86b6fe53f54d7232919" > 442< / a > < / span > < span class = "keywordtype" > void< / span > < a class = "code hl_function" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a3a7542b6c6b4c86b6fe53f54d7232919" > DirectNetworkSolver::RHSFunctor::operator()< / a > (< / div >
< div class = "line" > < a id = "l00443" name = "l00443" > < / a > < span class = "lineno" > 443< / span > < span class = "keyword" > const< / span > boost::numeric::ublas::vector< double> & Y,< / div >
< div class = "line" > < a id = "l00444" name = "l00444" > < / a > < span class = "lineno" > 444< / span > boost::numeric::ublas::vector< double> & dYdt,< / div >
< div class = "line" > < a id = "l00445" name = "l00445" > < / a > < span class = "lineno" > 445< / span > < span class = "keywordtype" > double< / span > t< / div >
< div class = "line" > < a id = "l00446" name = "l00446" > < / a > < span class = "lineno" > 446< / span > )< span class = "keyword" > const < / span > {< / div >
< div class = "line" > < a id = "l00447" name = "l00447" > < / a > < span class = "lineno" > 447< / span > < span class = "keyword" > const< / span > std::vector< double> y(Y.begin(), < a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#ac4a1af03d2a4fbc5cc2407b8a6833147" > m_numSpecies< / a > + Y.begin());< / div >
< div class = "line" > < a id = "l00448" name = "l00448" > < / a > < span class = "lineno" > 448< / span > < / div >
< div class = "line" > < a id = "l00449" name = "l00449" > < / a > < span class = "lineno" > 449< / span > < span class = "comment" > // std::string timescales = utils::formatNuclearTimescaleLogString(< / span > < / div >
< div class = "line" > < a id = "l00450" name = "l00450" > < / a > < span class = "lineno" > 450< / span > < span class = "comment" > // m_engine,< / span > < / div >
< div class = "line" > < a id = "l00451" name = "l00451" > < / a > < span class = "lineno" > 451< / span > < span class = "comment" > // y,< / span > < / div >
< div class = "line" > < a id = "l00452" name = "l00452" > < / a > < span class = "lineno" > 452< / span > < span class = "comment" > // m_T9,< / span > < / div >
< div class = "line" > < a id = "l00453" name = "l00453" > < / a > < span class = "lineno" > 453< / span > < span class = "comment" > // m_rho< / span > < / div >
< div class = "line" > < a id = "l00454" name = "l00454" > < / a > < span class = "lineno" > 454< / span > < span class = "comment" > // );< / span > < / div >
< div class = "line" > < a id = "l00455" name = "l00455" > < / a > < span class = "lineno" > 455< / span > < span class = "comment" > // LOG_TRACE_L2(m_logger, " {}" , timescales);< / span > < / div >
< div class = "line" > < a id = "l00456" name = "l00456" > < / a > < span class = "lineno" > 456< / span > < / div >
< div class = "line" > < a id = "l00457" name = "l00457" > < / a > < span class = "lineno" > 457< / span > < span class = "keyword" > auto< / span > [dydt, eps] = < a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a04f8c84e46e6fbd0977e50fda4829d1a" > m_engine< / a > .calculateRHSAndEnergy(y, < a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a082844f1eae0609e66620575210e8823" > m_T9< / a > , < a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a7d4f7f04c4ee6f0b519194f87aa265e7" > m_rho< / a > );< / div >
< div class = "line" > < a id = "l00458" name = "l00458" > < / a > < span class = "lineno" > 458< / span > dYdt.resize(< a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#ac4a1af03d2a4fbc5cc2407b8a6833147" > m_numSpecies< / a > + 1);< / div >
< div class = "line" > < a id = "l00459" name = "l00459" > < / a > < span class = "lineno" > 459< / span > std::ranges::copy(dydt, dYdt.begin());< / div >
< div class = "line" > < a id = "l00460" name = "l00460" > < / a > < span class = "lineno" > 460< / span > dYdt(< a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#ac4a1af03d2a4fbc5cc2407b8a6833147" > m_numSpecies< / a > ) = eps;< / div >
< div class = "line" > < a id = "l00461" name = "l00461" > < / a > < span class = "lineno" > 461< / span > }< / div >
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< / div >
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< div class = "line" > < a id = "l00462" name = "l00462" > < / a > < span class = "lineno" > 462< / span > < / div >
< div class = "foldopen" id = "foldopen00463" data-start = "{" data-end = "}" >
< div class = "line" > < a id = "l00463" name = "l00463" > < / a > < span class = "lineno" > < a class = "line" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#ad4fc0b406218aa2f567f5c61a4eda3c9" > 463< / a > < / span > < span class = "keywordtype" > void< / span > < a class = "code hl_function" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#ad4fc0b406218aa2f567f5c61a4eda3c9" > DirectNetworkSolver::JacobianFunctor::operator()< / a > (< / div >
< div class = "line" > < a id = "l00464" name = "l00464" > < / a > < span class = "lineno" > 464< / span > < span class = "keyword" > const< / span > boost::numeric::ublas::vector< double> & Y,< / div >
< div class = "line" > < a id = "l00465" name = "l00465" > < / a > < span class = "lineno" > 465< / span > boost::numeric::ublas::matrix< double> & J,< / div >
< div class = "line" > < a id = "l00466" name = "l00466" > < / a > < span class = "lineno" > 466< / span > < span class = "keywordtype" > double< / span > t,< / div >
< div class = "line" > < a id = "l00467" name = "l00467" > < / a > < span class = "lineno" > 467< / span > boost::numeric::ublas::vector< double> & dfdt< / div >
< div class = "line" > < a id = "l00468" name = "l00468" > < / a > < span class = "lineno" > 468< / span > )< span class = "keyword" > const < / span > {< / div >
< div class = "line" > < a id = "l00469" name = "l00469" > < / a > < span class = "lineno" > 469< / span > J.resize(< a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a3f624142212b5e6ff65f5706953fe353" > m_numSpecies< / a > +1, < a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a3f624142212b5e6ff65f5706953fe353" > m_numSpecies< / a > +1);< / div >
< div class = "line" > < a id = "l00470" name = "l00470" > < / a > < span class = "lineno" > 470< / span > J.clear();< / div >
< div class = "line" > < a id = "l00471" name = "l00471" > < / a > < span class = "lineno" > 471< / span > < span class = "keywordflow" > for< / span > (< span class = "keywordtype" > int< / span > i = 0; i < < a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a3f624142212b5e6ff65f5706953fe353" > m_numSpecies< / a > ; ++i) {< / div >
< div class = "line" > < a id = "l00472" name = "l00472" > < / a > < span class = "lineno" > 472< / span > < span class = "keywordflow" > for< / span > (< span class = "keywordtype" > int< / span > j = 0; j < < a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a3f624142212b5e6ff65f5706953fe353" > m_numSpecies< / a > ; ++j) {< / div >
< div class = "line" > < a id = "l00473" name = "l00473" > < / a > < span class = "lineno" > 473< / span > J(i, j) = < a class = "code hl_variable" href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a56f8b2b222fb2a7dac190ead0babfdd0" > m_engine< / a > .getJacobianMatrixEntry(i, j);< / div >
< div class = "line" > < a id = "l00474" name = "l00474" > < / a > < span class = "lineno" > 474< / span > }< / div >
< div class = "line" > < a id = "l00475" name = "l00475" > < / a > < span class = "lineno" > 475< / span > }< / div >
< div class = "line" > < a id = "l00476" name = "l00476" > < / a > < span class = "lineno" > 476< / span > }< / div >
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< / div >
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< div class = "line" > < a id = "l00477" name = "l00477" > < / a > < span class = "lineno" > 477< / span > }< / div >
< div class = "ttc" id = "aclassgridfire_1_1_dynamic_engine_html" > < div class = "ttname" > < a href = "classgridfire_1_1_dynamic_engine.html" > gridfire::DynamicEngine< / a > < / div > < div class = "ttdoc" > Abstract class for engines supporting Jacobian and stoichiometry operations.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "engine__abstract_8h_source.html#l00121" > engine_abstract.h:121< / a > < / div > < / div >
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< div class = "ttc" id = "aclassgridfire_1_1_engine_html_a020e1b493d6964cafdad08fde697ceb3" > < div class = "ttname" > < a href = "classgridfire_1_1_engine.html#a020e1b493d6964cafdad08fde697ceb3" > gridfire::Engine::getNetworkSpecies< / a > < / div > < div class = "ttdeci" > virtual const std::vector< fourdst::atomic::Species > & getNetworkSpecies() const =0< / div > < div class = "ttdoc" > Get the list of species in the network.< / div > < / div >
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< div class = "ttc" id = "aclassgridfire_1_1solver_1_1_direct_network_solver_html" > < div class = "ttname" > < a href = "classgridfire_1_1solver_1_1_direct_network_solver.html" > gridfire::solver::DirectNetworkSolver< / a > < / div > < div class = "ttdoc" > A network solver that directly integrates the reaction network ODEs.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "solver_8h_source.html#l00386" > solver.h:386< / a > < / div > < / div >
< div class = "ttc" id = "aclassgridfire_1_1solver_1_1_direct_network_solver_html_a093aa89fd23c2fe03266e286871c7079" > < div class = "ttname" > < a href = "classgridfire_1_1solver_1_1_direct_network_solver.html#a093aa89fd23c2fe03266e286871c7079" > gridfire::solver::DirectNetworkSolver::m_logger< / a > < / div > < div class = "ttdeci" > quill::Logger * m_logger< / div > < div class = "ttdoc" > Logger instance.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "solver_8h_source.html#l00491" > solver.h:491< / a > < / div > < / div >
< div class = "ttc" id = "aclassgridfire_1_1solver_1_1_direct_network_solver_html_a0d1b52d06b0521e7c556d75cd8d2ffe6" > < div class = "ttname" > < a href = "classgridfire_1_1solver_1_1_direct_network_solver.html#a0d1b52d06b0521e7c556d75cd8d2ffe6" > gridfire::solver::DirectNetworkSolver::m_config< / a > < / div > < div class = "ttdeci" > fourdst::config::Config & m_config< / div > < div class = "ttdoc" > Configuration instance.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "solver_8h_source.html#l00492" > solver.h:492< / a > < / div > < / div >
< div class = "ttc" id = "aclassgridfire_1_1solver_1_1_direct_network_solver_html_a0e8a4b8ef656e0b084d11bea982e412a" > < div class = "ttname" > < a href = "classgridfire_1_1solver_1_1_direct_network_solver.html#a0e8a4b8ef656e0b084d11bea982e412a" > gridfire::solver::DirectNetworkSolver::evaluate< / a > < / div > < div class = "ttdeci" > NetOut evaluate(const NetIn & netIn) override< / div > < div class = "ttdoc" > Evaluates the network for a given timestep using direct integration.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "#l00375" > solver.cpp:375< / a > < / div > < / div >
< div class = "ttc" id = "aclassgridfire_1_1solver_1_1_network_solver_strategy_html_a724924d94eaf82b67d9988a55c3261e8" > < div class = "ttname" > < a href = "classgridfire_1_1solver_1_1_network_solver_strategy.html#a724924d94eaf82b67d9988a55c3261e8" > gridfire::solver::NetworkSolverStrategy< DynamicEngine > ::m_engine< / a > < / div > < div class = "ttdeci" > DynamicEngine & m_engine< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "solver_8h_source.html#l00063" > solver.h:63< / a > < / div > < / div >
< div class = "ttc" id = "aclassgridfire_1_1solver_1_1_q_s_e_network_solver_html_a00d112f6087f6e3a93f4d40a519308d2" > < div class = "ttname" > < a href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a00d112f6087f6e3a93f4d40a519308d2" > gridfire::solver::QSENetworkSolver::calculateSteadyStateAbundances< / a > < / div > < div class = "ttdeci" > Eigen::VectorXd calculateSteadyStateAbundances(const std::vector< double > & Y, const double T9, const double rho, const dynamicQSESpeciesIndices & indices) const< / div > < div class = "ttdoc" > Calculates the steady-state abundances of the QSE species.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "#l00205" > solver.cpp:205< / a > < / div > < / div >
< div class = "ttc" id = "aclassgridfire_1_1solver_1_1_q_s_e_network_solver_html_a35f1f6ede393f15c8bb8862f3f1c3b07" > < div class = "ttname" > < a href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a35f1f6ede393f15c8bb8862f3f1c3b07" > gridfire::solver::QSENetworkSolver::shouldUpdateView< / a > < / div > < div class = "ttdeci" > bool shouldUpdateView(const NetIn & conditions) const< / div > < div class = "ttdoc" > Determines whether the adaptive engine view should be updated.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "#l00308" > solver.cpp:308< / a > < / div > < / div >
< div class = "ttc" id = "aclassgridfire_1_1solver_1_1_q_s_e_network_solver_html_a3c9d46c8f5c519854cd65309a588772f" > < div class = "ttname" > < a href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a3c9d46c8f5c519854cd65309a588772f" > gridfire::solver::QSENetworkSolver::m_lastSeenConditions< / a > < / div > < div class = "ttdeci" > NetIn m_lastSeenConditions< / div > < div class = "ttdoc" > The last seen input conditions.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "solver_8h_source.html#l00373" > solver.h:373< / a > < / div > < / div >
< div class = "ttc" id = "aclassgridfire_1_1solver_1_1_q_s_e_network_solver_html_a428b49fa7878559665363de06f1a44a7" > < div class = "ttname" > < a href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a428b49fa7878559665363de06f1a44a7" > gridfire::solver::QSENetworkSolver::m_logger< / a > < / div > < div class = "ttdeci" > quill::Logger * m_logger< / div > < div class = "ttdoc" > Logger instance.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "solver_8h_source.html#l00369" > solver.h:369< / a > < / div > < / div >
< div class = "ttc" id = "aclassgridfire_1_1solver_1_1_q_s_e_network_solver_html_a53b5496db7fed6f345dca39656bf9c0e" > < div class = "ttname" > < a href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a53b5496db7fed6f345dca39656bf9c0e" > gridfire::solver::QSENetworkSolver::evaluate< / a > < / div > < div class = "ttdeci" > NetOut evaluate(const NetIn & netIn) override< / div > < div class = "ttdoc" > Evaluates the network for a given timestep using the QSE approach.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "#l00026" > solver.cpp:26< / a > < / div > < / div >
< div class = "ttc" id = "aclassgridfire_1_1solver_1_1_q_s_e_network_solver_html_a5d81ee5bfcfd5e77fe52201ba9e63719" > < div class = "ttname" > < a href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a5d81ee5bfcfd5e77fe52201ba9e63719" > gridfire::solver::QSENetworkSolver::packSpeciesTypeIndexVectors< / a > < / div > < div class = "ttdeci" > dynamicQSESpeciesIndices packSpeciesTypeIndexVectors(const std::vector< double > & Y, const double T9, const double rho) const< / div > < div class = "ttdoc" > Packs the species indices into vectors based on their type (dynamic or QSE).< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "#l00137" > solver.cpp:137< / a > < / div > < / div >
< div class = "ttc" id = "aclassgridfire_1_1solver_1_1_q_s_e_network_solver_html_a7d19b6e50db34d38c81afec76bbedee1" > < div class = "ttname" > < a href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a7d19b6e50db34d38c81afec76bbedee1" > gridfire::solver::QSENetworkSolver::m_config< / a > < / div > < div class = "ttdeci" > fourdst::config::Config & m_config< / div > < div class = "ttdoc" > Configuration instance.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "solver_8h_source.html#l00370" > solver.h:370< / a > < / div > < / div >
< div class = "ttc" id = "aclassgridfire_1_1solver_1_1_q_s_e_network_solver_html_ab07e68fd418ab058f890502d191b3f18" > < div class = "ttname" > < a href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#ab07e68fd418ab058f890502d191b3f18" > gridfire::solver::QSENetworkSolver::m_isViewInitialized< / a > < / div > < div class = "ttdeci" > bool m_isViewInitialized< / div > < div class = "ttdoc" > Flag indicating whether the adaptive engine view has been initialized.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "solver_8h_source.html#l00372" > solver.h:372< / a > < / div > < / div >
< div class = "ttc" id = "aclassgridfire_1_1solver_1_1_q_s_e_network_solver_html_abaa567001df0007b714f474febae408b" > < div class = "ttname" > < a href = "classgridfire_1_1solver_1_1_q_s_e_network_solver.html#abaa567001df0007b714f474febae408b" > gridfire::solver::QSENetworkSolver::initializeNetworkWithShortIgnition< / a > < / div > < div class = "ttdeci" > NetOut initializeNetworkWithShortIgnition(const NetIn & netIn) const< / div > < div class = "ttdoc" > Initializes the network with a short ignition phase.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "#l00264" > solver.cpp:264< / a > < / div > < / div >
2025-07-01 07:24:18 -04:00
< div class = "ttc" id = "aengine__graph_8h_html" > < div class = "ttname" > < a href = "engine__graph_8h.html" > engine_graph.h< / a > < / div > < / div >
2025-07-01 11:40:51 -04:00
< div class = "ttc" id = "alogging_8h_html" > < div class = "ttname" > < a href = "logging_8h.html" > logging.h< / a > < / div > < / div >
2025-07-01 15:06:22 -04:00
< div class = "ttc" id = "anamespacegridfire_1_1screening_html_aa82aafbc4f8c28d0a75b60798e3a7d25ad80b95b1abb9c8659fa4cc9d3d29bb71" > < div class = "ttname" > < a href = "namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25ad80b95b1abb9c8659fa4cc9d3d29bb71" > gridfire::screening::ScreeningType::BARE< / a > < / div > < div class = "ttdeci" > @ BARE< / div > < div class = "ttdoc" > No screening applied. The screening factor is always 1.0.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "screening__types_8h_source.html#l00016" > screening_types.h:16< / a > < / div > < / div >
2025-07-01 07:24:18 -04:00
< div class = "ttc" id = "anamespacegridfire_1_1solver_html" > < div class = "ttname" > < a href = "namespacegridfire_1_1solver.html" > gridfire::solver< / a > < / div > < div class = "ttdef" > < b > Definition< / b > < a href = "solver_8h_source.html#l00017" > solver.h:17< / a > < / div > < / div >
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< div class = "ttc" id = "anamespacegridfire_html_a96c062f94713921e5d7568ecedcdcb06" > < div class = "ttname" > < a href = "namespacegridfire.html#a96c062f94713921e5d7568ecedcdcb06" > gridfire::MIN_ABUNDANCE_THRESHOLD< / a > < / div > < div class = "ttdeci" > static constexpr double MIN_ABUNDANCE_THRESHOLD< / div > < div class = "ttdoc" > Minimum abundance threshold below which species are ignored.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "engine__graph_8h_source.html#l00056" > engine_graph.h:56< / a > < / div > < / div >
2025-07-01 07:24:18 -04:00
< div class = "ttc" id = "anetwork_8h_html" > < div class = "ttname" > < a href = "network_8h.html" > network.h< / a > < / div > < / div >
< div class = "ttc" id = "asolver_8h_html" > < div class = "ttname" > < a href = "solver_8h.html" > solver.h< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1_net_in_html" > < div class = "ttname" > < a href = "structgridfire_1_1_net_in.html" > gridfire::NetIn< / a > < / div > < div class = "ttdef" > < b > Definition< / b > < a href = "network_8h_source.html#l00053" > network.h:53< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1_net_in_html_a06f0dff9f8927b7cf2da3004c8fa1577" > < div class = "ttname" > < a href = "structgridfire_1_1_net_in.html#a06f0dff9f8927b7cf2da3004c8fa1577" > gridfire::NetIn::density< / a > < / div > < div class = "ttdeci" > double density< / div > < div class = "ttdoc" > Density in g/cm^3.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "network_8h_source.html#l00058" > network.h:58< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1_net_in_html_a0a8d820cfeaa92ee31f253795c57e0d1" > < div class = "ttname" > < a href = "structgridfire_1_1_net_in.html#a0a8d820cfeaa92ee31f253795c57e0d1" > gridfire::NetIn::tMax< / a > < / div > < div class = "ttdeci" > double tMax< / div > < div class = "ttdoc" > Maximum time.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "network_8h_source.html#l00055" > network.h:55< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1_net_in_html_a13058f4929e72c1187abbebcddb8aed1" > < div class = "ttname" > < a href = "structgridfire_1_1_net_in.html#a13058f4929e72c1187abbebcddb8aed1" > gridfire::NetIn::composition< / a > < / div > < div class = "ttdeci" > fourdst::composition::Composition composition< / div > < div class = "ttdoc" > Composition of the network.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "network_8h_source.html#l00054" > network.h:54< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1_net_in_html_a47781e8d5503e3b4f12d669e2cbcfb65" > < div class = "ttname" > < a href = "structgridfire_1_1_net_in.html#a47781e8d5503e3b4f12d669e2cbcfb65" > gridfire::NetIn::MolarAbundance< / a > < / div > < div class = "ttdeci" > std::vector< double > MolarAbundance() const< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "network_8cpp_source.html#l00030" > network.cpp:30< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1_net_in_html_a4e556f7bb18f46654b3445476734076a" > < div class = "ttname" > < a href = "structgridfire_1_1_net_in.html#a4e556f7bb18f46654b3445476734076a" > gridfire::NetIn::dt0< / a > < / div > < div class = "ttdeci" > double dt0< / div > < div class = "ttdoc" > Initial time step.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "network_8h_source.html#l00056" > network.h:56< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1_net_in_html_a5be0f5195a5cd1dd177b9fc5ab83a7be" > < div class = "ttname" > < a href = "structgridfire_1_1_net_in.html#a5be0f5195a5cd1dd177b9fc5ab83a7be" > gridfire::NetIn::temperature< / a > < / div > < div class = "ttdeci" > double temperature< / div > < div class = "ttdoc" > Temperature in Kelvin.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "network_8h_source.html#l00057" > network.h:57< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1_net_out_html" > < div class = "ttname" > < a href = "structgridfire_1_1_net_out.html" > gridfire::NetOut< / a > < / div > < div class = "ttdef" > < b > Definition< / b > < a href = "network_8h_source.html#l00065" > network.h:65< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1_net_out_html_a073529511ae0e52f868b47cce0e8ac0a" > < div class = "ttname" > < a href = "structgridfire_1_1_net_out.html#a073529511ae0e52f868b47cce0e8ac0a" > gridfire::NetOut::composition< / a > < / div > < div class = "ttdeci" > fourdst::composition::Composition composition< / div > < div class = "ttdoc" > Composition of the network after evaluation.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "network_8h_source.html#l00066" > network.h:66< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1_net_out_html_a43d5a861708992c949f616aa2a035ec6" > < div class = "ttname" > < a href = "structgridfire_1_1_net_out.html#a43d5a861708992c949f616aa2a035ec6" > gridfire::NetOut::energy< / a > < / div > < div class = "ttdeci" > double energy< / div > < div class = "ttdoc" > Energy in ergs after evaluation.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "network_8h_source.html#l00068" > network.h:68< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1_net_out_html_a51c16703132cf739ec2fd89eae7badd6" > < div class = "ttname" > < a href = "structgridfire_1_1_net_out.html#a51c16703132cf739ec2fd89eae7badd6" > gridfire::NetOut::num_steps< / a > < / div > < div class = "ttdeci" > int num_steps< / div > < div class = "ttdoc" > Number of steps taken in the evaluation.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "network_8h_source.html#l00067" > network.h:67< / a > < / div > < / div >
2025-07-01 11:40:51 -04:00
< div class = "ttc" id = "astructgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor_html" > < div class = "ttname" > < a href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html" > gridfire::solver::DirectNetworkSolver::JacobianFunctor< / a > < / div > < div class = "ttdoc" > Functor for calculating the Jacobian matrix.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "solver_8h_source.html#l00452" > solver.h:452< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor_html_a3f624142212b5e6ff65f5706953fe353" > < div class = "ttname" > < a href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a3f624142212b5e6ff65f5706953fe353" > gridfire::solver::DirectNetworkSolver::JacobianFunctor::m_numSpecies< / a > < / div > < div class = "ttdeci" > const size_t m_numSpecies< / div > < div class = "ttdoc" > The number of species in the network.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "solver_8h_source.html#l00456" > solver.h:456< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor_html_a56f8b2b222fb2a7dac190ead0babfdd0" > < div class = "ttname" > < a href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#a56f8b2b222fb2a7dac190ead0babfdd0" > gridfire::solver::DirectNetworkSolver::JacobianFunctor::m_engine< / a > < / div > < div class = "ttdeci" > DynamicEngine & m_engine< / div > < div class = "ttdoc" > The engine used to evaluate the network.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "solver_8h_source.html#l00453" > solver.h:453< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor_html_ad4fc0b406218aa2f567f5c61a4eda3c9" > < div class = "ttname" > < a href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#ad4fc0b406218aa2f567f5c61a4eda3c9" > gridfire::solver::DirectNetworkSolver::JacobianFunctor::operator()< / a > < / div > < div class = "ttdeci" > void operator()(const boost::numeric::ublas::vector< double > & Y, boost::numeric::ublas::matrix< double > & J, double t, boost::numeric::ublas::vector< double > & dfdt) const< / div > < div class = "ttdoc" > Calculates the Jacobian matrix.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "#l00463" > solver.cpp:463< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor_html" > < div class = "ttname" > < a href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html" > gridfire::solver::DirectNetworkSolver::RHSFunctor< / a > < / div > < div class = "ttdoc" > Functor for calculating the right-hand side of the ODEs.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "solver_8h_source.html#l00409" > solver.h:409< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor_html_a04f8c84e46e6fbd0977e50fda4829d1a" > < div class = "ttname" > < a href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a04f8c84e46e6fbd0977e50fda4829d1a" > gridfire::solver::DirectNetworkSolver::RHSFunctor::m_engine< / a > < / div > < div class = "ttdeci" > DynamicEngine & m_engine< / div > < div class = "ttdoc" > The engine used to evaluate the network.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "solver_8h_source.html#l00410" > solver.h:410< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor_html_a082844f1eae0609e66620575210e8823" > < div class = "ttname" > < a href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a082844f1eae0609e66620575210e8823" > gridfire::solver::DirectNetworkSolver::RHSFunctor::m_T9< / a > < / div > < div class = "ttdeci" > const double m_T9< / div > < div class = "ttdoc" > Temperature in units of 10^9 K.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "solver_8h_source.html#l00411" > solver.h:411< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor_html_a3a7542b6c6b4c86b6fe53f54d7232919" > < div class = "ttname" > < a href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a3a7542b6c6b4c86b6fe53f54d7232919" > gridfire::solver::DirectNetworkSolver::RHSFunctor::operator()< / a > < / div > < div class = "ttdeci" > void operator()(const boost::numeric::ublas::vector< double > & Y, boost::numeric::ublas::vector< double > & dYdt, double t) const< / div > < div class = "ttdoc" > Calculates the time derivatives of the species abundances.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "#l00442" > solver.cpp:442< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor_html_a7d4f7f04c4ee6f0b519194f87aa265e7" > < div class = "ttname" > < a href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a7d4f7f04c4ee6f0b519194f87aa265e7" > gridfire::solver::DirectNetworkSolver::RHSFunctor::m_rho< / a > < / div > < div class = "ttdeci" > const double m_rho< / div > < div class = "ttdoc" > Density in g/cm^3.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "solver_8h_source.html#l00412" > solver.h:412< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor_html_ac4a1af03d2a4fbc5cc2407b8a6833147" > < div class = "ttname" > < a href = "structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#ac4a1af03d2a4fbc5cc2407b8a6833147" > gridfire::solver::DirectNetworkSolver::RHSFunctor::m_numSpecies< / a > < / div > < div class = "ttdeci" > const size_t m_numSpecies< / div > < div class = "ttdoc" > The number of species in the network.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "solver_8h_source.html#l00413" > solver.h:413< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor_html" > < div class = "ttname" > < a href = "structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html" > gridfire::solver::QSENetworkSolver::EigenFunctor< / a > < / div > < div class = "ttdoc" > Functor for calculating the residual and Jacobian for the QSE species using Eigen.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "solver_8h_source.html#l00309" > solver.h:309< / a > < / div > < / div >
2025-07-01 07:24:18 -04:00
< div class = "ttc" id = "astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor_html" > < div class = "ttname" > < a href = "structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html" > gridfire::solver::QSENetworkSolver::RHSFunctor< / a > < / div > < div class = "ttdoc" > Functor for calculating the right-hand side of the ODEs for the dynamic species.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "solver_8h_source.html#l00201" > solver.h:201< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor_html_a02c23ef20d616bf5a591a274b66cd75a" > < div class = "ttname" > < a href = "structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#a02c23ef20d616bf5a591a274b66cd75a" > gridfire::solver::QSENetworkSolver::RHSFunctor::m_Y_QSE< / a > < / div > < div class = "ttdeci" > const Eigen::VectorXd & m_Y_QSE< / div > < div class = "ttdoc" > Steady-state abundances of the QSE species.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "solver_8h_source.html#l00205" > solver.h:205< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor_html_a0d8d28a6559cfed5e7cd683523d49b2c" > < div class = "ttname" > < a href = "structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#a0d8d28a6559cfed5e7cd683523d49b2c" > gridfire::solver::QSENetworkSolver::RHSFunctor::m_engine< / a > < / div > < div class = "ttdeci" > DynamicEngine & m_engine< / div > < div class = "ttdoc" > The engine used to evaluate the network.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "solver_8h_source.html#l00202" > solver.h:202< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor_html_a35026100163c7cc6fdb4c2e4d988b8cb" > < div class = "ttname" > < a href = "structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#a35026100163c7cc6fdb4c2e4d988b8cb" > gridfire::solver::QSENetworkSolver::RHSFunctor::m_T9< / a > < / div > < div class = "ttdeci" > const double m_T9< / div > < div class = "ttdoc" > Temperature in units of 10^9 K.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "solver_8h_source.html#l00206" > solver.h:206< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor_html_a3ac1ef529627d21f7d1ad718dc87f7f9" > < div class = "ttname" > < a href = "structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#a3ac1ef529627d21f7d1ad718dc87f7f9" > gridfire::solver::QSENetworkSolver::RHSFunctor::m_dynamicSpeciesIndices< / a > < / div > < div class = "ttdeci" > const std::vector< size_t > & m_dynamicSpeciesIndices< / div > < div class = "ttdoc" > Indices of the dynamic species.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "solver_8h_source.html#l00203" > solver.h:203< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor_html_a6be7259897a47ce480b289144b06e269" > < div class = "ttname" > < a href = "structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#a6be7259897a47ce480b289144b06e269" > gridfire::solver::QSENetworkSolver::RHSFunctor::m_QSESpeciesIndices< / a > < / div > < div class = "ttdeci" > const std::vector< size_t > & m_QSESpeciesIndices< / div > < div class = "ttdoc" > Indices of the QSE species.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "solver_8h_source.html#l00204" > solver.h:204< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor_html_adc0f8e655af42f414dcb220a7224f261" > < div class = "ttname" > < a href = "structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#adc0f8e655af42f414dcb220a7224f261" > gridfire::solver::QSENetworkSolver::RHSFunctor::m_rho< / a > < / div > < div class = "ttdeci" > const double m_rho< / div > < div class = "ttdoc" > Density in g/cm^3.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "solver_8h_source.html#l00207" > solver.h:207< / a > < / div > < / div >
2025-07-01 11:40:51 -04:00
< div class = "ttc" id = "astructgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor_html_ae0b6362d9c0a14e69c7a47233db6a86a" > < div class = "ttname" > < a href = "structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#ae0b6362d9c0a14e69c7a47233db6a86a" > gridfire::solver::QSENetworkSolver::RHSFunctor::operator()< / a > < / div > < div class = "ttdeci" > void operator()(const boost::numeric::ublas::vector< double > & YDynamic, boost::numeric::ublas::vector< double > & dYdtDynamic, double t) const< / div > < div class = "ttdoc" > Calculates the time derivatives of the dynamic species.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "#l00350" > solver.cpp:350< / a > < / div > < / div >
2025-07-01 07:24:18 -04:00
< div class = "ttc" id = "astructgridfire_1_1solver_1_1dynamic_q_s_e_species_indices_html" > < div class = "ttname" > < a href = "structgridfire_1_1solver_1_1dynamic_q_s_e_species_indices.html" > gridfire::solver::dynamicQSESpeciesIndices< / a > < / div > < div class = "ttdoc" > Structure to hold indices of dynamic and QSE species.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "solver_8h_source.html#l00027" > solver.h:27< / a > < / div > < / div >
< div class = "ttc" id = "astructgridfire_1_1solver_1_1dynamic_q_s_e_species_indices_html_a7d4ba82d9e60a4914938ebebecaab4a2" > < div class = "ttname" > < a href = "structgridfire_1_1solver_1_1dynamic_q_s_e_species_indices.html#a7d4ba82d9e60a4914938ebebecaab4a2" > gridfire::solver::dynamicQSESpeciesIndices::QSESpeciesIndices< / a > < / div > < div class = "ttdeci" > std::vector< size_t > QSESpeciesIndices< / div > < div class = "ttdoc" > Indices of fast species that are in QSE.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "solver_8h_source.html#l00029" > solver.h:29< / a > < / div > < / div >
2025-07-01 11:40:51 -04:00
< div class = "ttc" id = "astructgridfire_1_1solver_1_1dynamic_q_s_e_species_indices_html_ac6e0419abdd3c78b32e34c16c0543157" > < div class = "ttname" > < a href = "structgridfire_1_1solver_1_1dynamic_q_s_e_species_indices.html#ac6e0419abdd3c78b32e34c16c0543157" > gridfire::solver::dynamicQSESpeciesIndices::dynamicSpeciesIndices< / a > < / div > < div class = "ttdeci" > std::vector< size_t > dynamicSpeciesIndices< / div > < div class = "ttdoc" > Indices of slow species that are not in QSE.< / div > < div class = "ttdef" > < b > Definition< / b > < a href = "solver_8h_source.html#l00028" > solver.h:28< / a > < / div > < / div >
2025-07-01 07:24:18 -04:00
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