283 lines
15 KiB
XML
283 lines
15 KiB
XML
|
|
<?xml version="1.0" encoding="UTF-8" standalone="no"?>
|
||
|
|
<!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN"
|
||
|
|
"http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd">
|
||
|
|
<!-- Generated by graphviz version 13.0.1 (20250615.1724)
|
||
|
|
-->
|
||
|
|
<!-- Title: GridFireContext Pages: 1 -->
|
||
|
|
<!--zoomable 239 -->
|
||
|
|
|
||
|
|
<svg id="main" version="1.1" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" xml:space="preserve" onload="init(evt)">
|
||
|
|
|
||
|
|
<style type="text/css"><![CDATA[
|
||
|
|
.node, .edge {opacity: 0.7;}
|
||
|
|
.node.selected, .edge.selected {opacity: 1;}
|
||
|
|
.edge:hover path { stroke: red; }
|
||
|
|
.edge:hover polygon { stroke: red; fill: red; }
|
||
|
|
]]></style>
|
||
|
|
|
||
|
|
<defs>
|
||
|
|
<circle id="rim" cx="0" cy="0" r="7"/>
|
||
|
|
<circle id="rim2" cx="0" cy="0" r="3.5"/>
|
||
|
|
<g id="zoomPlus">
|
||
|
|
<use xlink:href="#rim" fill="#404040"><set attributeName="fill" to="#808080" begin="zoomplus.mouseover" end="zoomplus.mouseout"/></use>
|
||
|
|
<path d="M-4,0h8M0,-4v8" fill="none" stroke="white" stroke-width="1.5" pointer-events="none"/>
|
||
|
|
</g>
|
||
|
|
<g id="zoomMin">
|
||
|
|
<use xlink:href="#rim" fill="#404040"><set attributeName="fill" to="#808080" begin="zoomminus.mouseover" end="zoomminus.mouseout"/></use>
|
||
|
|
<path d="M-4,0h8" fill="none" stroke="white" stroke-width="1.5" pointer-events="none"/>
|
||
|
|
</g>
|
||
|
|
<g id="arrowUp" transform="translate(30 24)">
|
||
|
|
<use xlink:href="#rim"/>
|
||
|
|
<path pointer-events="none" fill="none" stroke="white" stroke-width="1.5" d="M0,-3.0v7 M-2.5,-0.5L0,-3.0L2.5,-0.5"/>
|
||
|
|
</g>
|
||
|
|
<g id="arrowRight" transform="rotate(90) translate(36 -43)">
|
||
|
|
<use xlink:href="#rim"/>
|
||
|
|
<path pointer-events="none" fill="none" stroke="white" stroke-width="1.5" d="M0,-3.0v7 M-2.5,-0.5L0,-3.0L2.5,-0.5"/>
|
||
|
|
</g>
|
||
|
|
<g id="arrowDown" transform="rotate(180) translate(-30 -48)">
|
||
|
|
<use xlink:href="#rim"/>
|
||
|
|
<path pointer-events="none" fill="none" stroke="white" stroke-width="1.5" d="M0,-3.0v7 M-2.5,-0.5L0,-3.0L2.5,-0.5"/>
|
||
|
|
</g>
|
||
|
|
<g id="arrowLeft" transform="rotate(270) translate(-36 17)">
|
||
|
|
<use xlink:href="#rim"/>
|
||
|
|
<path pointer-events="none" fill="none" stroke="white" stroke-width="1.5" d="M0,-3.0v7 M-2.5,-0.5L0,-3.0L2.5,-0.5"/>
|
||
|
|
</g>
|
||
|
|
<g id="resetDef">
|
||
|
|
<use xlink:href="#rim2" fill="#404040"><set attributeName="fill" to="#808080" begin="reset.mouseover" end="reset.mouseout"/></use>
|
||
|
|
</g>
|
||
|
|
</defs>
|
||
|
|
<script type="application/ecmascript">
|
||
|
|
var viewWidth = 508;
|
||
|
|
var viewHeight = 239;
|
||
|
|
var sectionId = 'dynsection-0';
|
||
|
|
</script>
|
||
|
|
<script type="application/ecmascript" xlink:href="svg.min.js"/>
|
||
|
|
<svg id="graph" class="graph">
|
||
|
|
<g id="viewport">
|
||
|
|
<title>GridFireContext</title>
|
||
|
|
<!-- Node1 -->
|
||
|
|
<g id="Node000001" class="node">
|
||
|
|
<title>Node1</title>
|
||
|
|
<g id="a_Node000001"><a xlink:title=" ">
|
||
|
|
<polygon fill="#999999" stroke="#666666" points="499.5,-121.88 414.5,-121.88 414.5,-102.62 499.5,-102.62 499.5,-121.88"/>
|
||
|
|
<text xml:space="preserve" text-anchor="middle" x="457" y="-108.38" font-family="Helvetica,sans-Serif" font-size="10.00">GridFireContext</text>
|
||
|
|
</a>
|
||
|
|
</g>
|
||
|
|
</g>
|
||
|
|
<!-- Node2 -->
|
||
|
|
<g id="Node000002" class="node">
|
||
|
|
<title>Node2</title>
|
||
|
|
<g id="a_Node000002"><a xlink:title=" ">
|
||
|
|
<polygon fill="white" stroke="#666666" points="311.38,-230.5 185.12,-230.5 185.12,-200 311.38,-200 311.38,-230.5"/>
|
||
|
|
<text xml:space="preserve" text-anchor="start" x="193.12" y="-217" font-family="Helvetica,sans-Serif" font-size="10.00">std::unique_ptr< gridfire</text>
|
||
|
|
<text xml:space="preserve" text-anchor="middle" x="248.25" y="-205.75" font-family="Helvetica,sans-Serif" font-size="10.00">::policy::NetworkPolicy ></text>
|
||
|
|
</a>
|
||
|
|
</g>
|
||
|
|
</g>
|
||
|
|
<!-- Node2->Node1 -->
|
||
|
|
<g id="edge1_Node000001_Node000002" class="edge">
|
||
|
|
<title>Node2->Node1</title>
|
||
|
|
<g id="a_edge1_Node000001_Node000002"><a xlink:title=" ">
|
||
|
|
<path fill="none" stroke="#9a32cd" stroke-dasharray="5,2" d="M311.57,-195.74C316.48,-193.96 321.34,-192.12 326,-190.25 358.28,-177.28 366.72,-174.23 396.5,-156.25 413.88,-145.76 432.47,-131.46 444.16,-122.05"/>
|
||
|
|
<polygon fill="#9a32cd" stroke="#9a32cd" points="310.49,-192.41 302.21,-199.02 312.81,-199.01 310.49,-192.41"/>
|
||
|
|
</a>
|
||
|
|
</g>
|
||
|
|
<text xml:space="preserve" text-anchor="middle" x="370.25" y="-184.61" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> policy</text>
|
||
|
|
</g>
|
||
|
|
<!-- Node3 -->
|
||
|
|
<g id="Node000003" class="node">
|
||
|
|
<title>Node3</title>
|
||
|
|
<g id="a_Node000003"><a xlink:href="classgridfire_1_1policy_1_1_network_policy.html" target="_top" xlink:title="Abstract interface for policies that construct DynamicEngine networks from a seed composition.">
|
||
|
|
<polygon fill="white" stroke="#666666" points="119.88,-230.5 0.38,-230.5 0.38,-200 119.88,-200 119.88,-230.5"/>
|
||
|
|
<text xml:space="preserve" text-anchor="start" x="8.38" y="-217" font-family="Helvetica,sans-Serif" font-size="10.00">gridfire::policy::Network</text>
|
||
|
|
<text xml:space="preserve" text-anchor="middle" x="60.12" y="-205.75" font-family="Helvetica,sans-Serif" font-size="10.00">Policy</text>
|
||
|
|
</a>
|
||
|
|
</g>
|
||
|
|
</g>
|
||
|
|
<!-- Node3->Node2 -->
|
||
|
|
<g id="edge2_Node000002_Node000003" class="edge">
|
||
|
|
<title>Node3->Node2</title>
|
||
|
|
<g id="a_edge2_Node000002_Node000003"><a xlink:title=" ">
|
||
|
|
<path fill="none" stroke="#9a32cd" stroke-dasharray="5,2" d="M131.57,-215.25C149.04,-215.25 167.65,-215.25 184.72,-215.25"/>
|
||
|
|
<polygon fill="#9a32cd" stroke="#9a32cd" points="131.79,-211.75 121.79,-215.25 131.79,-218.75 131.79,-211.75"/>
|
||
|
|
</a>
|
||
|
|
</g>
|
||
|
|
<text xml:space="preserve" text-anchor="middle" x="145.38" y="-217" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> ptr</text>
|
||
|
|
</g>
|
||
|
|
<!-- Node4 -->
|
||
|
|
<g id="Node000004" class="node">
|
||
|
|
<title>Node4</title>
|
||
|
|
<g id="a_Node000004"><a xlink:href="classgridfire_1_1engine_1_1_dynamic_engine.html" target="_top" xlink:title="Abstract class for engines supporting Jacobian and stoichiometry operations.">
|
||
|
|
<polygon fill="white" stroke="#666666" points="310.62,-181.5 185.88,-181.5 185.88,-151 310.62,-151 310.62,-181.5"/>
|
||
|
|
<text xml:space="preserve" text-anchor="start" x="193.88" y="-168" font-family="Helvetica,sans-Serif" font-size="10.00">gridfire::engine::Dynamic</text>
|
||
|
|
<text xml:space="preserve" text-anchor="middle" x="248.25" y="-156.75" font-family="Helvetica,sans-Serif" font-size="10.00">Engine</text>
|
||
|
|
</a>
|
||
|
|
</g>
|
||
|
|
</g>
|
||
|
|
<!-- Node4->Node1 -->
|
||
|
|
<g id="edge3_Node000001_Node000004" class="edge">
|
||
|
|
<title>Node4->Node1</title>
|
||
|
|
<g id="a_edge3_Node000001_Node000004"><a xlink:title=" ">
|
||
|
|
<path fill="none" stroke="#9a32cd" stroke-dasharray="5,2" d="M320.16,-147.73C352.71,-139.23 390.04,-129.48 417.31,-122.35"/>
|
||
|
|
<polygon fill="#9a32cd" stroke="#9a32cd" points="319.58,-144.26 310.79,-150.18 321.35,-151.04 319.58,-144.26"/>
|
||
|
|
</a>
|
||
|
|
</g>
|
||
|
|
<text xml:space="preserve" text-anchor="middle" x="370.25" y="-142.62" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> engine</text>
|
||
|
|
</g>
|
||
|
|
<!-- Node5 -->
|
||
|
|
<g id="Node000005" class="node">
|
||
|
|
<title>Node5</title>
|
||
|
|
<g id="a_Node000005"><a xlink:href="classgridfire_1_1engine_1_1_engine.html" target="_top" xlink:title="Abstract base class for a reaction network engine.">
|
||
|
|
<polygon fill="white" stroke="#666666" points="118,-175.88 2.25,-175.88 2.25,-156.62 118,-156.62 118,-175.88"/>
|
||
|
|
<text xml:space="preserve" text-anchor="middle" x="60.12" y="-162.38" font-family="Helvetica,sans-Serif" font-size="10.00">gridfire::engine::Engine</text>
|
||
|
|
</a>
|
||
|
|
</g>
|
||
|
|
</g>
|
||
|
|
<!-- Node5->Node4 -->
|
||
|
|
<g id="edge4_Node000004_Node000005" class="edge">
|
||
|
|
<title>Node5->Node4</title>
|
||
|
|
<g id="a_edge4_Node000004_Node000005"><a xlink:title=" ">
|
||
|
|
<path fill="none" stroke="#63b8ff" d="M129.94,-166.25C148.17,-166.25 167.73,-166.25 185.55,-166.25"/>
|
||
|
|
<polygon fill="#63b8ff" stroke="#63b8ff" points="130,-162.75 120,-166.25 130,-169.75 130,-162.75"/>
|
||
|
|
</a>
|
||
|
|
</g>
|
||
|
|
</g>
|
||
|
|
<!-- Node6 -->
|
||
|
|
<g id="Node000006" class="node">
|
||
|
|
<title>Node6</title>
|
||
|
|
<g id="a_Node000006"><a xlink:title=" ">
|
||
|
|
<polygon fill="white" stroke="#666666" points="326,-133.12 170.5,-133.12 170.5,-91.38 326,-91.38 326,-133.12"/>
|
||
|
|
<text xml:space="preserve" text-anchor="start" x="178.5" y="-119.62" font-family="Helvetica,sans-Serif" font-size="10.00">std::unique_ptr< gridfire</text>
|
||
|
|
<text xml:space="preserve" text-anchor="start" x="178.5" y="-108.38" font-family="Helvetica,sans-Serif" font-size="10.00">::solver::NetworkSolverStrategy</text>
|
||
|
|
<text xml:space="preserve" text-anchor="middle" x="248.25" y="-97.12" font-family="Helvetica,sans-Serif" font-size="10.00">< engine::DynamicEngine > ></text>
|
||
|
|
</a>
|
||
|
|
</g>
|
||
|
|
</g>
|
||
|
|
<!-- Node6->Node1 -->
|
||
|
|
<g id="edge5_Node000001_Node000006" class="edge">
|
||
|
|
<title>Node6->Node1</title>
|
||
|
|
<g id="a_edge5_Node000001_Node000006"><a xlink:title=" ">
|
||
|
|
<path fill="none" stroke="#9a32cd" stroke-dasharray="5,2" d="M337.51,-112.25C364.07,-112.25 391.98,-112.25 414.04,-112.25"/>
|
||
|
|
<polygon fill="#9a32cd" stroke="#9a32cd" points="337.75,-108.75 327.75,-112.25 337.75,-115.75 337.75,-108.75"/>
|
||
|
|
</a>
|
||
|
|
</g>
|
||
|
|
<text xml:space="preserve" text-anchor="middle" x="370.25" y="-114" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> solver</text>
|
||
|
|
</g>
|
||
|
|
<!-- Node7 -->
|
||
|
|
<g id="Node000007" class="node">
|
||
|
|
<title>Node7</title>
|
||
|
|
<g id="a_Node000007"><a xlink:href="classgridfire_1_1solver_1_1_network_solver_strategy.html" target="_top" xlink:title=" ">
|
||
|
|
<polygon fill="white" stroke="#666666" points="120.25,-133.12 0,-133.12 0,-91.38 120.25,-91.38 120.25,-133.12"/>
|
||
|
|
<text xml:space="preserve" text-anchor="start" x="8" y="-119.62" font-family="Helvetica,sans-Serif" font-size="10.00">gridfire::solver::Network</text>
|
||
|
|
<text xml:space="preserve" text-anchor="start" x="8" y="-108.38" font-family="Helvetica,sans-Serif" font-size="10.00">SolverStrategy< engine</text>
|
||
|
|
<text xml:space="preserve" text-anchor="middle" x="60.12" y="-97.12" font-family="Helvetica,sans-Serif" font-size="10.00">::DynamicEngine ></text>
|
||
|
|
</a>
|
||
|
|
</g>
|
||
|
|
</g>
|
||
|
|
<!-- Node7->Node6 -->
|
||
|
|
<g id="edge6_Node000006_Node000007" class="edge">
|
||
|
|
<title>Node7->Node6</title>
|
||
|
|
<g id="a_edge6_Node000006_Node000007"><a xlink:title=" ">
|
||
|
|
<path fill="none" stroke="#9a32cd" stroke-dasharray="5,2" d="M131.82,-112.25C144.31,-112.25 157.38,-112.25 170.05,-112.25"/>
|
||
|
|
<polygon fill="#9a32cd" stroke="#9a32cd" points="132.04,-108.75 122.04,-112.25 132.04,-115.75 132.04,-108.75"/>
|
||
|
|
</a>
|
||
|
|
</g>
|
||
|
|
<text xml:space="preserve" text-anchor="middle" x="145.38" y="-114" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> ptr</text>
|
||
|
|
</g>
|
||
|
|
<!-- Node8 -->
|
||
|
|
<g id="Node000008" class="node">
|
||
|
|
<title>Node8</title>
|
||
|
|
<g id="a_Node000008"><a xlink:title=" ">
|
||
|
|
<polygon fill="white" stroke="#666666" points="299,-73.5 197.5,-73.5 197.5,-43 299,-43 299,-73.5"/>
|
||
|
|
<text xml:space="preserve" text-anchor="start" x="205.5" y="-60" font-family="Helvetica,sans-Serif" font-size="10.00">std::vector< fourdst</text>
|
||
|
|
<text xml:space="preserve" text-anchor="middle" x="248.25" y="-48.75" font-family="Helvetica,sans-Serif" font-size="10.00">::atomic::Species ></text>
|
||
|
|
</a>
|
||
|
|
</g>
|
||
|
|
</g>
|
||
|
|
<!-- Node8->Node1 -->
|
||
|
|
<g id="edge7_Node000001_Node000008" class="edge">
|
||
|
|
<title>Node8->Node1</title>
|
||
|
|
<g id="a_edge7_Node000001_Node000008"><a xlink:title=" ">
|
||
|
|
<path fill="none" stroke="#9a32cd" stroke-dasharray="5,2" d="M310.26,-74.19C344.94,-83.24 387.32,-94.31 417.41,-102.17"/>
|
||
|
|
<polygon fill="#9a32cd" stroke="#9a32cd" points="311.32,-70.85 300.76,-71.7 309.55,-77.62 311.32,-70.85"/>
|
||
|
|
</a>
|
||
|
|
</g>
|
||
|
|
<text xml:space="preserve" text-anchor="middle" x="370.25" y="-98.04" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> speciesList</text>
|
||
|
|
</g>
|
||
|
|
<!-- Node9 -->
|
||
|
|
<g id="Node000009" class="node">
|
||
|
|
<title>Node9</title>
|
||
|
|
<g id="a_Node000009"><a xlink:title=" ">
|
||
|
|
<polygon fill="white" stroke="#666666" points="278,-24.88 218.5,-24.88 218.5,-5.63 278,-5.63 278,-24.88"/>
|
||
|
|
<text xml:space="preserve" text-anchor="middle" x="248.25" y="-11.38" font-family="Helvetica,sans-Serif" font-size="10.00">std::string</text>
|
||
|
|
</a>
|
||
|
|
</g>
|
||
|
|
</g>
|
||
|
|
<!-- Node9->Node1 -->
|
||
|
|
<g id="edge8_Node000001_Node000009" class="edge">
|
||
|
|
<title>Node9->Node1</title>
|
||
|
|
<g id="a_edge8_Node000001_Node000009"><a xlink:title=" ">
|
||
|
|
<path fill="none" stroke="#9a32cd" stroke-dasharray="5,2" d="M289.47,-23.57C301.38,-26.48 314.35,-30.07 326,-34.25 358.7,-45.98 366.76,-50.05 396.5,-68 413.91,-78.51 432.5,-92.9 444.17,-102.38"/>
|
||
|
|
<polygon fill="#9a32cd" stroke="#9a32cd" points="290.46,-20.21 279.93,-21.35 288.88,-27.03 290.46,-20.21"/>
|
||
|
|
</a>
|
||
|
|
</g>
|
||
|
|
<text xml:space="preserve" text-anchor="middle" x="370.25" y="-69.75" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> last_error</text>
|
||
|
|
</g>
|
||
|
|
<!-- Node10 -->
|
||
|
|
<g id="Node000010" class="node">
|
||
|
|
<title>Node10</title>
|
||
|
|
<g id="a_Node000010"><a xlink:title=" ">
|
||
|
|
<polygon fill="white" stroke="#666666" points="107.12,-30.5 13.12,-30.5 13.12,0 107.12,0 107.12,-30.5"/>
|
||
|
|
<text xml:space="preserve" text-anchor="start" x="21.12" y="-17" font-family="Helvetica,sans-Serif" font-size="10.00">std::basic_string<</text>
|
||
|
|
<text xml:space="preserve" text-anchor="middle" x="60.12" y="-5.75" font-family="Helvetica,sans-Serif" font-size="10.00"> Char ></text>
|
||
|
|
</a>
|
||
|
|
</g>
|
||
|
|
</g>
|
||
|
|
<!-- Node10->Node9 -->
|
||
|
|
<g id="edge9_Node000009_Node000010" class="edge">
|
||
|
|
<title>Node10->Node9</title>
|
||
|
|
<g id="a_edge9_Node000009_Node000010"><a xlink:title=" ">
|
||
|
|
<path fill="none" stroke="#63b8ff" d="M118.94,-15.25C151.86,-15.25 191.69,-15.25 218.16,-15.25"/>
|
||
|
|
<polygon fill="#63b8ff" stroke="#63b8ff" points="119.13,-11.75 109.13,-15.25 119.13,-18.75 119.13,-11.75"/>
|
||
|
|
</a>
|
||
|
|
</g>
|
||
|
|
</g>
|
||
|
|
</g>
|
||
|
|
</svg>
|
||
|
|
|
||
|
|
<g id="navigator" transform="translate(0 0)" fill="#404254">
|
||
|
|
<rect fill="#f2f5e9" fill-opacity="0.5" stroke="#606060" stroke-width=".5" x="0" y="0" width="60" height="60"/>
|
||
|
|
<use id="zoomplus" xlink:href="#zoomPlus" x="17" y="9" onmousedown="handleZoom(evt,'in')"/>
|
||
|
|
<use id="zoomminus" xlink:href="#zoomMin" x="42" y="9" onmousedown="handleZoom(evt,'out')"/>
|
||
|
|
<use id="reset" xlink:href="#resetDef" x="30" y="36" onmousedown="handleReset()"/>
|
||
|
|
<use id="arrowup" xlink:href="#arrowUp" x="0" y="0" onmousedown="handlePan(0,-1)"/>
|
||
|
|
<use id="arrowright" xlink:href="#arrowRight" x="0" y="0" onmousedown="handlePan(1,0)"/>
|
||
|
|
<use id="arrowdown" xlink:href="#arrowDown" x="0" y="0" onmousedown="handlePan(0,1)"/>
|
||
|
|
<use id="arrowleft" xlink:href="#arrowLeft" x="0" y="0" onmousedown="handlePan(-1,0)"/>
|
||
|
|
</g>
|
||
|
|
<svg viewBox="0 0 15 15" width="100%" height="30px" preserveAspectRatio="xMaxYMin meet">
|
||
|
|
<g id="arrow_out" transform="scale(0.3 0.3)">
|
||
|
|
<a xlink:href="struct_grid_fire_context__coll__graph_org.svg" target="_base">
|
||
|
|
<rect id="button" ry="5" rx="5" y="6" x="6" height="38" width="38"
|
||
|
|
fill="#f2f5e9" fill-opacity="0.5" stroke="#606060" stroke-width="1.0"/>
|
||
|
|
<path id="arrow"
|
||
|
|
d="M 11.500037,31.436501 C 11.940474,20.09759 22.043105,11.32322 32.158766,21.979434 L 37.068811,17.246167 C 37.068811,17.246167 37.088388,32 37.088388,32 L 22.160133,31.978069 C 22.160133,31.978069 26.997745,27.140456 26.997745,27.140456 C 18.528582,18.264221 13.291696,25.230495 11.500037,31.436501 z"
|
||
|
|
style="fill:#404040;"/>
|
||
|
|
</a>
|
||
|
|
</g>
|
||
|
|
</svg>
|
||
|
|
|
||
|
|
<style type='text/css'>
|
||
|
|
<![CDATA[
|
||
|
|
[data-mouse-over-selected='false'] { opacity: 0.7; }
|
||
|
|
[data-mouse-over-selected='true'] { opacity: 1.0; }
|
||
|
|
]]>
|
||
|
|
</style>
|
||
|
|
<script type="application/ecmascript"><![CDATA[
|
||
|
|
document.addEventListener('DOMContentLoaded', (event) => {
|
||
|
|
highlightEdges();
|
||
|
|
highlightAdjacentNodes();
|
||
|
|
});
|
||
|
|
]]></script>
|
||
|
|
</svg>
|