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engine_approx8.cpp
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/* ***********************************************************************
//
// Copyright (C) 2025 -- The 4D-STAR Collaboration
// File Author: Emily Boudreaux
// Last Modified: March 21, 2025
//
// 4DSSE is free software; you can use it and/or modify
// it under the terms and restrictions the GNU General Library Public
// License version 3 (GPLv3) as published by the Free Software Foundation.
//
// 4DSSE is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
// See the GNU Library General Public License for more details.
//
// You should have received a copy of the GNU Library General Public License
// along with this software; if not, write to the Free Software
// Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
//
// *********************************************************************** */
#include <cmath>
#include <stdexcept>
#include <array>
#include <boost/numeric/odeint.hpp>
#include "fourdst/constants/const.h"
#include "fourdst/config/config.h"
#include "quill/LogMacros.h"
#include "gridfire/engine/engine_approx8.h"
#include "gridfire/network.h"
/* Nuclear reaction network in cgs units based on Frank Timmes' "approx8".
At this time it does neither screening nor neutrino losses. It includes
the following 8 isotopes:
h1
he3
he4
c12
n14
o16
ne20
mg24
and the following nuclear reactions:
---pp chain---
p(p,e+)d
d(p,g)he3
he3(he3,2p)he4
---CNO cycle---
c12(p,g)n13 - n13 -> c13 + p -> n14
n14(p,g)o15 - o15 + p -> c12 + he4
n14(a,g)f18 - proceeds to ne20
n15(p,a)c12 - / these two n15 reactions are \ CNO I
n15(p,g)o16 - \ used to calculate a fraction / CNO II
o16(p,g)f17 - f17 + e -> o17 and then o17 + p -> n14 + he4
---alpha captures---
c12(a,g)o16
triple alpha
o16(a,g)ne20
ne20(a,g)mg24
c12(c12,a)ne20
c12(o16,a)mg24
At present the rates are all evaluated using a fitting function.
The coefficients to the fit are from reaclib.jinaweb.org .
*/
namespace gridfire::approx8{
// using namespace std;
using namespace boost::numeric::odeint;
//helper functions
// a function to multiply two arrays and then sum the resulting elements: sum(a*b)
double sum_product( const vec7 &a, const vec7 &b){
double sum=0;
for (size_t i=0; i < a.size(); i++) {
sum += a[i] * b[i];
}
return sum;
}
// the fit to the nuclear reaction rates is of the form:
// exp( a0 + a1/T9 + a2/T9^(1/3) + a3*T9^(1/3) + a4*T9 + a5*T9^(5/3) + log(T9) )
// this function returns an array of the T9 terms in that order, where T9 is the temperatures in GigaKelvin
vec7 get_T9_array(const double &T) {
vec7 arr;
const double T9=1e-9*T;
const double T913=pow(T9,1./3.);
arr[0]=1;
arr[1]=1/T9;
arr[2]=1/T913;
arr[3]=T913;
arr[4]=T9;
arr[5]=pow(T9,5./3.);
arr[6]=log(T9);
return arr;
}
// this function uses the two preceding functions to evaluate the rate given the T9 array and the coefficients
double rate_fit(const vec7 &T9, const vec7 &coef){
return exp(sum_product(T9,coef));
}
// p + p -> d; this, like some of the other rates, this is a composite of multiple fits
double pp_rate(const vec7 &T9) {
constexpr vec7 a1 = {-34.78630, 0,-3.511930, 3.100860, -0.1983140, 1.262510e-2, -1.025170};
constexpr vec7 a2 = { -4.364990e+1,-2.460640e-3,-2.750700,-4.248770e-1,1.598700e-2,-6.908750e-4,-2.076250e-1};
return rate_fit(T9,a1) + rate_fit(T9,a2);
}
// p + d -> he3
double dp_rate(const vec7 &T9) {
constexpr vec7 a1 = {7.528980, 0, -3.720800, 0.8717820, 0, 0,-0.6666670};
constexpr vec7 a2 = {8.935250, 0, -3.720800, 0.1986540, 0, 0, 0.3333330};
return rate_fit(T9,a1) + rate_fit(T9,a2);
}
// he3 + he3 -> he4 + 2p
double he3he3_rate(const vec7 &T9){
constexpr vec7 a = {2.477880e+01,0,-12.27700,-0.1036990,-6.499670e-02,1.681910e-02,-6.666670e-01};
return rate_fit(T9,a);
}
// he3(he3,2p)he4 ** (missing both coefficients but have a reaction)
double he3he4_rate(const vec7 &T9){
constexpr vec7 a1 = {1.560990e+01,0.000000e+00,-1.282710e+01,-3.082250e-02,-6.546850e-01,8.963310e-02,-6.666670e-01};
constexpr vec7 a2 = {1.770750e+01,0.000000e+00,-1.282710e+01,-3.812600e+00,9.422850e-02,-3.010180e-03,1.333330e+00};
return rate_fit(T9,a1) + rate_fit(T9,a2);
}
// he4 + he4 + he4 -> c12 ** (missing middle coefficient but have other two)
double triple_alpha_rate(const vec7 &T9){
constexpr vec7 a1 = {-9.710520e-01,0.000000e+00,-3.706000e+01,2.934930e+01,-1.155070e+02,-1.000000e+01,-1.333330e+00};
constexpr vec7 a2 = {-1.178840e+01,-1.024460e+00,-2.357000e+01,2.048860e+01,-1.298820e+01,-2.000000e+01,-2.166670e+00};
constexpr vec7 a3 = {-2.435050e+01,-4.126560e+00,-1.349000e+01,2.142590e+01,-1.347690e+00,8.798160e-02,-1.316530e+01};
return rate_fit(T9,a1) + rate_fit(T9,a2) + rate_fit(T9,a3);
}
// c12 + p -> n13
double c12p_rate(const vec7 &T9){
constexpr vec7 a1={1.714820e+01,0.000000e+00,-1.369200e+01,-2.308810e-01,4.443620e+00,-3.158980e+00,-6.666670e-01};
constexpr vec7 a2={1.754280e+01,-3.778490e+00,-5.107350e+00,-2.241110e+00,1.488830e-01,0.000000e+00,-1.500000e+00};
return rate_fit(T9,a1) + rate_fit(T9,a2);
}
// c12 + he4 -> o16 ** (missing first coefficient but have the second)
double c12a_rate(const vec7 &T9){
constexpr vec7 a1={6.965260e+01,-1.392540e+00,5.891280e+01,-1.482730e+02,9.083240e+00,-5.410410e-01,7.035540e+01};
constexpr vec7 a2={2.546340e+02,-1.840970e+00,1.034110e+02,-4.205670e+02,6.408740e+01,-1.246240e+01,1.373030e+02};
return rate_fit(T9,a1) + rate_fit(T9,a2);
}
// n14(p,g)o15 - o15 + p -> c12 + he4
double n14p_rate(const vec7 &T9){
constexpr vec7 a1={1.701000e+01,0.000000e+00,-1.519300e+01,-1.619540e-01,-7.521230e+00,-9.875650e-01,-6.666670e-01};
constexpr vec7 a2={2.011690e+01,0.000000e+00,-1.519300e+01,-4.639750e+00,9.734580e+00,-9.550510e+00,3.333330e-01};
constexpr vec7 a3={7.654440e+00,-2.998000e+00,0.000000e+00,0.000000e+00,0.000000e+00,0.000000e+00,-1.500000e+00};
constexpr vec7 a4={6.735780e+00,-4.891000e+00,0.000000e+00,0.000000e+00,0.000000e+00,0.000000e+00,6.820000e-02};
return rate_fit(T9,a1) + rate_fit(T9,a2) + rate_fit(T9,a3) + rate_fit(T9,a4);
}
// n14(a,g)f18 assumed to go on to ne20
double n14a_rate(const vec7 &T9){
constexpr vec7 a1={2.153390e+01,0.000000e+00,-3.625040e+01,0.000000e+00,0.000000e+00,-5.000000e+00,-6.666670e-01};
constexpr vec7 a2={1.968380e-01,-5.160340e+00,0.000000e+00,0.000000e+00,0.000000e+00,0.000000e+00,-1.500000e+00};
constexpr vec7 a3={1.389950e+01,-1.096560e+01,-5.622700e+00,0.000000e+00,0.000000e+00,0.000000e+00,-1.500000e+00};
return rate_fit(T9,a1) + rate_fit(T9,a2) + rate_fit(T9,a3);
}
// n15(p,a)c12 (CNO I)
double n15pa_rate(const vec7 &T9){
constexpr vec7 a1 = {2.747640e+01,0.000000e+00,-1.525300e+01,1.593180e+00,2.447900e+00,-2.197080e+00,-6.666670e-01};
constexpr vec7 a2 = {-4.873470e+00,-2.021170e+00,0.000000e+00,3.084970e+01,-8.504330e+00,-1.544260e+00,-1.500000e+00};
constexpr vec7 a3 = {2.089720e+01,-7.406000e+00,0.000000e+00,0.000000e+00,0.000000e+00,0.000000e+00,-1.500000e+00};
constexpr vec7 a4 = {-6.575220e+00,-1.163800e+00,0.000000e+00,2.271050e+01,-2.907070e+00,2.057540e-01,-1.500000e+00};
return rate_fit(T9,a1) + rate_fit(T9,a2) + rate_fit(T9,a3) + rate_fit(T9,a4);
}
// n15(p,g)o16 (CNO II)
double n15pg_rate(const vec7 &T9){
constexpr vec7 a1 = {2.001760e+01,0.000000e+00,-1.524000e+01,3.349260e-01,4.590880e+00,-4.784680e+00,-6.666670e-01};
constexpr vec7 a2 = {6.590560e+00,-2.923150e+00,0.000000e+00,0.000000e+00,0.000000e+00,0.000000e+00,-1.500000e+00};
constexpr vec7 a3 = {1.454440e+01,-1.022950e+01,0.000000e+00,0.000000e+00,4.590370e-02,0.000000e+00,-1.500000e+00};
return rate_fit(T9,a1) + rate_fit(T9,a2) + rate_fit(T9,a3);
}
double n15pg_frac(const vec7 &T9){
const double f1=n15pg_rate(T9);
const double f2=n15pa_rate(T9);
return f1/(f1+f2);
}
// o16(p,g)f17 then f17 -> o17(p,a)n14
double o16p_rate(const vec7 &T9){
constexpr vec7 a={1.909040e+01,0.000000e+00,-1.669600e+01,-1.162520e+00,2.677030e-01,-3.384110e-02,-6.666670e-01};
return rate_fit(T9,a);
}
// o16(a,g)ne20
double o16a_rate(const vec7 &T9){
constexpr vec7 a1={2.390300e+01,0.000000e+00,-3.972620e+01,-2.107990e-01,4.428790e-01,-7.977530e-02,-6.666670e-01};
constexpr vec7 a2={3.885710e+00,-1.035850e+01,0.000000e+00,0.000000e+00,0.000000e+00,0.000000e+00,-1.500000e+00};
constexpr vec7 a3={9.508480e+00,-1.276430e+01,0.000000e+00,-3.659250e+00,7.142240e-01,-1.075080e-03,-1.500000e+00};
return rate_fit(T9,a1) + rate_fit(T9,a2) + rate_fit(T9,a3);
}
// ne20(a,g)mg24
double ne20a_rate(const vec7 &T9){
constexpr vec7 a1={2.450580e+01,0.000000e+00,-4.625250e+01,5.589010e+00,7.618430e+00,-3.683000e+00,-6.666670e-01};
constexpr vec7 a2={-3.870550e+01,-2.506050e+00,0.000000e+00,0.000000e+00,0.000000e+00,0.000000e+00,-1.500000e+00};
constexpr vec7 a3={1.983070e+00,-9.220260e+00,0.000000e+00,0.000000e+00,0.000000e+00,0.000000e+00,-1.500000e+00};
constexpr vec7 a4={-8.798270e+00,-1.278090e+01,0.000000e+00,1.692290e+01,-2.573250e+00,2.089970e-01,-1.500000e+00};
return rate_fit(T9,a1) + rate_fit(T9,a2) + rate_fit(T9,a3) + rate_fit(T9,a4);
}
// c12(c12,a)ne20
double c12c12_rate(const vec7 &T9){
constexpr vec7 a={6.128630e+01,0.000000e+00,-8.416500e+01,-1.566270e+00,-7.360840e-02,-7.279700e-02,-6.666670e-01};
return rate_fit(T9,a);
}
// c12(o16,a)mg24
double c12o16_rate(const vec7 &T9){
constexpr vec7 a={4.853410e+01,3.720400e-01,-1.334130e+02,5.015720e+01,-3.159870e+00,1.782510e-02,-2.370270e+01};
return rate_fit(T9,a);
}
// for Boost ODE solvers either a struct or a class is required
// a Jacobian matrix for implicit solvers
void Jacobian::operator() ( const vector_type &y, matrix_type &J, double /* t */, vector_type &dfdt ) const {
fourdst::constant::Constants& constants = fourdst::constant::Constants::getInstance();
const double avo = constants.get("N_a").value;
const double clight = constants.get("c").value;
// EOS
const vec7 T9=get_T9_array(y[Approx8Net::iTemp]);
// evaluate rates once per call
const double rpp=pp_rate(T9);
const double r33=he3he3_rate(T9);
const double r34=he3he4_rate(T9);
const double r3a=triple_alpha_rate(T9);
const double rc12p=c12p_rate(T9);
const double rc12a=c12a_rate(T9);
const double rn14p=n14p_rate(T9);
const double rn14a=n14a_rate(T9);
const double ro16p=o16p_rate(T9);
const double ro16a=o16a_rate(T9);
const double rne20a=ne20a_rate(T9);
const double r1212=c12c12_rate(T9);
const double r1216=c12o16_rate(T9);
const double pFrac=n15pg_frac(T9);
const double aFrac=1-pFrac;
const double yh1 = y[Approx8Net::ih1];
const double yhe3 = y[Approx8Net::ihe3];
const double yhe4 = y[Approx8Net::ihe4];
const double yc12 = y[Approx8Net::ic12];
const double yn14 = y[Approx8Net::in14];
const double yo16 = y[Approx8Net::io16];
const double yne20 = y[Approx8Net::ine20];
// zero all elements to begin
for (int i=0; i < Approx8Net::nVar; i++) {
for (int j=0; j < Approx8Net::nVar; j++) {
J(i,j)=0.0;
}
}
// h1 jacobian elements
J(Approx8Net::ih1,Approx8Net::ih1) = -3*yh1*rpp - 2*yc12*rc12p -2*yn14*rn14p -2*yo16*ro16p;
J(Approx8Net::ih1,Approx8Net::ihe3) = 2*yhe3*r33 - yhe4*r34;
J(Approx8Net::ih1,Approx8Net::ihe4) = -yhe3*r34;
J(Approx8Net::ih1,Approx8Net::ic12) = -2*yh1*rc12p;
J(Approx8Net::ih1,Approx8Net::in14) = -2*yh1*rn14p;
J(Approx8Net::ih1,Approx8Net::io16) = -2*yh1*ro16p;
// he3 jacobian elements
J(Approx8Net::ihe3,Approx8Net::ih1) = yh1*rpp;
J(Approx8Net::ihe3,Approx8Net::ihe3) = -2*yhe3*r33 - yhe4*r34;
J(Approx8Net::ihe3,Approx8Net::ihe4) = -yhe3*r34;
// he4 jacobian elements
J(Approx8Net::ihe4,Approx8Net::ih1) = yn14*aFrac*rn14p + yo16*ro16p;
J(Approx8Net::ihe4,Approx8Net::ihe3) = yhe3*r33 - yhe4*r34;
J(Approx8Net::ihe4,Approx8Net::ihe4) = yhe3*r34 - 1.5*yhe4*yhe4*r3a - yc12*rc12a - 1.5*yn14*rn14a - yo16*ro16a - yne20*rne20a;
J(Approx8Net::ihe4,Approx8Net::ic12) = -yhe4*rc12a + yc12*r1212 + yo16*r1216;
J(Approx8Net::ihe4,Approx8Net::in14) = yh1*aFrac*rn14p - 1.5*yhe4*rn14a;
J(Approx8Net::ihe4,Approx8Net::io16) = yh1*ro16p - yhe4*ro16a + yc12*r1216;
J(Approx8Net::ihe4,Approx8Net::ine20) = -yhe4*rne20a;
// c12 jacobian elements
J(Approx8Net::ic12,Approx8Net::ih1) = -yc12*rc12p + yn14*aFrac*rn14p;
J(Approx8Net::ic12,Approx8Net::ihe4) = 0.5*yhe4*yhe4*r3a - yhe4*rc12a;
J(Approx8Net::ic12,Approx8Net::ic12) = -yh1*rc12p - yhe4*rc12a - yo16*r1216 - 2*yc12*r1212;
J(Approx8Net::ic12,Approx8Net::in14) = yh1*yn14*aFrac*rn14p;
J(Approx8Net::ic12,Approx8Net::io16) = -yc12*r1216;
// n14 jacobian elements
J(Approx8Net::in14,Approx8Net::ih1) = yc12*rc12p - yn14*rn14p + yo16*ro16p;
J(Approx8Net::in14,Approx8Net::ihe4) = -yn14*rn14a;
J(Approx8Net::in14,Approx8Net::ic12) = yh1*rc12p;
J(Approx8Net::in14,Approx8Net::in14) = -yh1*rn14p - yhe4*rn14a;
J(Approx8Net::in14,Approx8Net::io16) = yo16*ro16p;
// o16 jacobian elements
J(Approx8Net::io16,Approx8Net::ih1) = yn14*pFrac*rn14p - yo16*ro16p;
J(Approx8Net::io16,Approx8Net::ihe4) = yc12*rc12a - yo16*ro16a;
J(Approx8Net::io16,Approx8Net::ic12) = yhe4*rc12a - yo16*r1216;
J(Approx8Net::io16,Approx8Net::in14) = yh1*pFrac*rn14p;
J(Approx8Net::io16,Approx8Net::io16) = yh1*ro16p - yc12*r1216 -yhe4*ro16a;
// ne20 jacobian elements
J(Approx8Net::ine20,Approx8Net::ihe4) = yn14*rn14a + yo16*ro16a - yne20*rne20a;
J(Approx8Net::ine20,Approx8Net::ic12) = yc12*r1212;
J(Approx8Net::ine20,Approx8Net::in14) = yhe4*rn14a;
J(Approx8Net::ine20,Approx8Net::io16) = yo16*ro16a;
J(Approx8Net::ine20,Approx8Net::ine20) = -yhe4*rne20a;
// mg24 jacobian elements
J(Approx8Net::img24,Approx8Net::ihe4) = yne20*rne20a;
J(Approx8Net::img24,Approx8Net::ic12) = yo16*r1216;
J(Approx8Net::img24,Approx8Net::io16) = yc12*r1216;
J(Approx8Net::img24,Approx8Net::ine20) = yhe4*rne20a;
// energy accounting
for (int j=0; j<Approx8Net::nIso; j++) {
for (int i=0; i<Approx8Net::nIso; i++) {
J(Approx8Net::iEnergy,j) += J(i,j)*Approx8Net::mIon[i];
}
J(Approx8Net::iEnergy,j) *= -avo*clight*clight;
}
}
void ODE::operator() ( const vector_type &y, vector_type &dydt, double /* t */) const {
const fourdst::constant::Constants& constants = fourdst::constant::Constants::getInstance();
const double avo = constants.get("N_a").value;
const double clight = constants.get("c").value;
// EOS
const double T = y[Approx8Net::iTemp];
const double den = y[Approx8Net::iDensity];
const vec7 T9=get_T9_array(T);
// rates
const double rpp=den*pp_rate(T9);
const double r33=den*he3he3_rate(T9);
const double r34=den*he3he4_rate(T9);
const double r3a=den*den*triple_alpha_rate(T9);
const double rc12p=den*c12p_rate(T9);
const double rc12a=den*c12a_rate(T9);
const double rn14p=den*n14p_rate(T9);
const double rn14a=n14a_rate(T9);
const double ro16p=den*o16p_rate(T9);
const double ro16a=den*o16a_rate(T9);
const double rne20a=den*ne20a_rate(T9);
const double r1212=den*c12c12_rate(T9);
const double r1216=den*c12o16_rate(T9);
const double pFrac=n15pg_frac(T9);
const double aFrac=1-pFrac;
const double yh1 = y[Approx8Net:: ih1];
const double yhe3 = y[Approx8Net:: ihe3];
const double yhe4 = y[Approx8Net:: ihe4];
const double yc12 = y[Approx8Net:: ic12];
const double yn14 = y[Approx8Net:: in14];
const double yo16 = y[Approx8Net:: io16];
const double yne20 = y[Approx8Net::ine20];
dydt[Approx8Net::ih1] = -1.5*yh1*yh1*rpp;
dydt[Approx8Net::ih1] += yhe3*yhe3*r33;
dydt[Approx8Net::ih1] += -yhe3*yhe4*r34;
dydt[Approx8Net::ih1] += -2*yh1*yc12*rc12p;
dydt[Approx8Net::ih1] += -2*yh1*yn14*rn14p;
dydt[Approx8Net::ih1] += -2*yh1*yo16*ro16p;
dydt[Approx8Net::ihe3] = 0.5*yh1*yh1*rpp;
dydt[Approx8Net::ihe3] += -yhe3*yhe3*r33;
dydt[Approx8Net::ihe3] += -yhe3*yhe4*r34;
dydt[Approx8Net::ihe4] = 0.5*yhe3*yhe3*r33;
dydt[Approx8Net::ihe4] += yhe3*yhe4*r34;
dydt[Approx8Net::ihe4] += -yhe4*yc12*rc12a;
dydt[Approx8Net::ihe4] += yh1*yn14*aFrac*rn14p;
dydt[Approx8Net::ihe4] += yh1*yo16*ro16p;
dydt[Approx8Net::ihe4] += -0.5*yhe4*yhe4*yhe4*r3a;
dydt[Approx8Net::ihe4] += -yhe4*yo16*ro16a;
dydt[Approx8Net::ihe4] += 0.5*yc12*yc12*r1212;
dydt[Approx8Net::ihe4] += yc12*yo16*r1216;
dydt[Approx8Net::ihe4] += -yhe4*yne20*rne20a;
dydt[Approx8Net::ic12] = (1./6.)*yhe4*yhe4*yhe4*r3a;
dydt[Approx8Net::ic12] += -yhe4*yc12*rc12a;
dydt[Approx8Net::ic12] += -yh1*yc12*rc12p;
dydt[Approx8Net::ic12] += yh1*yn14*aFrac*rn14p;
dydt[Approx8Net::ic12] += -yc12*yc12*r1212;
dydt[Approx8Net::ic12] += -yc12*yo16*r1216;
dydt[Approx8Net::in14] = yh1*yc12*rc12p;
dydt[Approx8Net::in14] += -yh1*yn14*rn14p;
dydt[Approx8Net::in14] += yh1*yo16*ro16p;
dydt[Approx8Net::in14] += -yhe4*yn14*rn14a;
dydt[Approx8Net::io16] = yhe4*yc12*rc12a;
dydt[Approx8Net::io16] += yh1*yn14*pFrac*rn14p;
dydt[Approx8Net::io16] += -yh1*yo16*ro16p;
dydt[Approx8Net::io16] += -yc12*yo16*r1216;
dydt[Approx8Net::io16] += -yhe4*yo16*ro16a;
dydt[Approx8Net::ine20] = 0.5*yc12*yc12*r1212;
dydt[Approx8Net::ine20] += yhe4*yn14*rn14a;
dydt[Approx8Net::ine20] += yhe4*yo16*ro16a;
dydt[Approx8Net::ine20] += -yhe4*yne20*rne20a;
dydt[Approx8Net::img24] = yc12*yo16*r1216;
dydt[Approx8Net::img24] += yhe4*yne20*rne20a;
dydt[Approx8Net::iTemp] = 0.;
dydt[Approx8Net::iDensity] = 0.;
// energy accounting
double eNuc = 0.;
for (int i=0; i<Approx8Net::nIso; i++) {
eNuc += Approx8Net::mIon[i]*dydt[i];
}
dydt[Approx8Net::iEnergy] = -eNuc*avo*clight*clight;
}
Approx8Network::Approx8Network() : Network(APPROX8) {}
NetOut Approx8Network::evaluate(const NetIn &netIn) {
m_y = convert_netIn(netIn);
m_tMax = netIn.tMax;
m_dt0 = netIn.dt0;
const double stiff_abs_tol = m_config.get<double>("Network:Approx8:Stiff:AbsTol", 1.0e-6);
const double stiff_rel_tol = m_config.get<double>("Network:Approx8:Stiff:RelTol", 1.0e-6);
const double nonstiff_abs_tol = m_config.get<double>("Network:Approx8:NonStiff:AbsTol", 1.0e-6);
const double nonstiff_rel_tol = m_config.get<double>("Network:Approx8:NonStiff:RelTol", 1.0e-6);
int num_steps = -1;
if (m_stiff) {
LOG_DEBUG(m_logger, "Using stiff solver for Approx8Network");
num_steps = integrate_const(
make_dense_output<rosenbrock4<double>>(stiff_abs_tol, stiff_rel_tol),
std::make_pair(ODE(), Jacobian()),
m_y,
0.0,
m_tMax,
m_dt0
);
} else {
LOG_DEBUG(m_logger, "Using non stiff solver for Approx8Network");
num_steps = integrate_const (
make_dense_output<runge_kutta_dopri5<vector_type>>(nonstiff_abs_tol, nonstiff_rel_tol),
ODE(),
m_y,
0.0,
m_tMax,
m_dt0
);
}
double ySum = 0.0;
for (int i = 0; i < Approx8Net::nIso; i++) {
m_y[i] *= Approx8Net::aIon[i];
ySum += m_y[i];
}
for (int i = 0; i < Approx8Net::nIso; i++) {
m_y[i] /= ySum;
}
NetOut netOut;
std::vector<double> outComposition;
outComposition.reserve(Approx8Net::nVar);
for (int i = 0; i < Approx8Net::nIso; i++) {
outComposition.push_back(m_y[i]);
}
netOut.energy = m_y[Approx8Net::iEnergy];
netOut.num_steps = num_steps;
const std::vector<std::string> symbols = {"H-1", "He-3", "He-4", "C-12", "N-14", "O-16", "Ne-20", "Mg-24"};
netOut.composition = fourdst::composition::Composition(symbols, outComposition);
return netOut;
}
void Approx8Network::setStiff(bool stiff) {
m_stiff = stiff;
}
vector_type Approx8Network::convert_netIn(const NetIn &netIn) {
vector_type y(Approx8Net::nVar, 0.0);
y[Approx8Net::ih1] = netIn.composition.getNumberFraction("H-1");
y[Approx8Net::ihe3] = netIn.composition.getNumberFraction("He-3");
y[Approx8Net::ihe4] = netIn.composition.getNumberFraction("He-4");
y[Approx8Net::ic12] = netIn.composition.getNumberFraction("C-12");
y[Approx8Net::in14] = netIn.composition.getNumberFraction("N-14");
y[Approx8Net::io16] = netIn.composition.getNumberFraction("O-16");
y[Approx8Net::ine20] = netIn.composition.getNumberFraction("Ne-20");
y[Approx8Net::img24] = netIn.composition.getNumberFraction("Mg-24");
y[Approx8Net::iTemp] = netIn.temperature;
y[Approx8Net::iDensity] = netIn.density;
y[Approx8Net::iEnergy] = netIn.energy;
return y;
}
};
// main program
gridfire::Network::Network
Network(const NetworkFormat format=NetworkFormat::APPROX8)
Definition network.cpp:41
gridfire::Network::m_logger
quill::Logger * m_logger
Logger instance.
Definition network.h:98
gridfire::Network::m_config
fourdst::config::Config & m_config
Configuration instance.
Definition network.h:96
gridfire::approx8::Approx8Network::convert_netIn
static vector_type convert_netIn(const NetIn &netIn)
Converts the input parameters to the internal state vector.
Definition engine_approx8.cpp:509
gridfire::approx8::Approx8Network::Approx8Network
Approx8Network()
Definition engine_approx8.cpp:443
gridfire::approx8::Approx8Network::m_stiff
bool m_stiff
Definition engine_approx8.h:320
gridfire::approx8::Approx8Network::m_dt0
double m_dt0
Definition engine_approx8.h:319
gridfire::approx8::Approx8Network::m_tMax
double m_tMax
Definition engine_approx8.h:318
gridfire::approx8::Approx8Network::evaluate
NetOut evaluate(const NetIn &netIn) override
Evaluates the nuclear network.
Definition engine_approx8.cpp:445
gridfire::approx8::Approx8Network::m_y
vector_type m_y
Definition engine_approx8.h:317
gridfire::approx8::Approx8Network::setStiff
void setStiff(bool stiff) override
Sets whether the solver should use a stiff method.
Definition engine_approx8.cpp:505
engine_approx8.h
gridfire::approx8
Definition engine_approx8.h:39
gridfire::approx8::he3he3_rate
double he3he3_rate(const vec7 &T9)
Calculates the rate for the reaction he3 + he3 -> he4 + 2p.
Definition engine_approx8.cpp:129
gridfire::approx8::pp_rate
double pp_rate(const vec7 &T9)
Calculates the rate for the reaction p + p -> d.
Definition engine_approx8.cpp:115
gridfire::approx8::get_T9_array
vec7 get_T9_array(const double &T)
Definition engine_approx8.cpp:93
gridfire::approx8::triple_alpha_rate
double triple_alpha_rate(const vec7 &T9)
Calculates the rate for the reaction he4 + he4 + he4 -> c12.
Definition engine_approx8.cpp:142
gridfire::approx8::matrix_type
boost::numeric::ublas::matrix< double > matrix_type
Alias for a matrix of doubles using Boost uBLAS.
Definition engine_approx8.h:51
gridfire::approx8::n14p_rate
double n14p_rate(const vec7 &T9)
Calculates the rate for the reaction n14(p,g)o15 - o15 + p -> c12 + he4.
Definition engine_approx8.cpp:164
gridfire::approx8::n14a_rate
double n14a_rate(const vec7 &T9)
Calculates the rate for the reaction n14(a,g)f18 assumed to go on to ne20.
Definition engine_approx8.cpp:173
gridfire::approx8::dp_rate
double dp_rate(const vec7 &T9)
Calculates the rate for the reaction p + d -> he3.
Definition engine_approx8.cpp:122
gridfire::approx8::he3he4_rate
double he3he4_rate(const vec7 &T9)
Calculates the rate for the reaction he3(he3,2p)he4.
Definition engine_approx8.cpp:135
gridfire::approx8::o16p_rate
double o16p_rate(const vec7 &T9)
Calculates the rate for the reaction o16(p,g)f17 then f17 -> o17(p,a)n14.
Definition engine_approx8.cpp:204
gridfire::approx8::c12c12_rate
double c12c12_rate(const vec7 &T9)
Calculates the rate for the reaction c12(c12,a)ne20.
Definition engine_approx8.cpp:227
gridfire::approx8::o16a_rate
double o16a_rate(const vec7 &T9)
Calculates the rate for the reaction o16(a,g)ne20.
Definition engine_approx8.cpp:210
gridfire::approx8::c12p_rate
double c12p_rate(const vec7 &T9)
Calculates the rate for the reaction c12 + p -> n13.
Definition engine_approx8.cpp:150
gridfire::approx8::c12o16_rate
double c12o16_rate(const vec7 &T9)
Calculates the rate for the reaction c12(o16,a)mg24.
Definition engine_approx8.cpp:233
gridfire::approx8::n15pa_rate
double n15pa_rate(const vec7 &T9)
Calculates the rate for the reaction n15(p,a)c12 (CNO I).
Definition engine_approx8.cpp:181
gridfire::approx8::vector_type
boost::numeric::ublas::vector< double > vector_type
Alias for a vector of doubles using Boost uBLAS.
Definition engine_approx8.h:45
gridfire::approx8::vec7
std::array< double, 7 > vec7
Alias for a std::array of 7 doubles.
Definition engine_approx8.h:57
gridfire::approx8::sum_product
double sum_product(const vec7 &a, const vec7 &b)
Definition engine_approx8.cpp:82
gridfire::approx8::n15pg_frac
double n15pg_frac(const vec7 &T9)
Calculates the fraction for the reaction n15(p,g)o16.
Definition engine_approx8.cpp:197
gridfire::approx8::n15pg_rate
double n15pg_rate(const vec7 &T9)
Calculates the rate for the reaction n15(p,g)o16 (CNO II).
Definition engine_approx8.cpp:190
gridfire::approx8::ne20a_rate
double ne20a_rate(const vec7 &T9)
Calculates the rate for the reaction ne20(a,g)mg24.
Definition engine_approx8.cpp:218
gridfire::approx8::rate_fit
double rate_fit(const vec7 &T9, const vec7 &coef)
Definition engine_approx8.cpp:110
gridfire::approx8::c12a_rate
double c12a_rate(const vec7 &T9)
Calculates the rate for the reaction c12 + he4 -> o16.
Definition engine_approx8.cpp:157
gridfire::APPROX8
@ APPROX8
Approx8 nuclear reaction network format.
Definition network.h:42
network.h
gridfire::NetIn
Definition network.h:53
gridfire::NetIn::density
double density
Density in g/cm^3.
Definition network.h:58
gridfire::NetIn::tMax
double tMax
Maximum time.
Definition network.h:55
gridfire::NetIn::composition
fourdst::composition::Composition composition
Composition of the network.
Definition network.h:54
gridfire::NetIn::dt0
double dt0
Initial time step.
Definition network.h:56
gridfire::NetIn::temperature
double temperature
Temperature in Kelvin.
Definition network.h:57
gridfire::NetIn::energy
double energy
Energy in ergs.
Definition network.h:59
gridfire::NetOut
Definition network.h:65
gridfire::NetOut::composition
fourdst::composition::Composition composition
Composition of the network after evaluation.
Definition network.h:66
gridfire::NetOut::energy
double energy
Energy in ergs after evaluation.
Definition network.h:68
gridfire::NetOut::num_steps
int num_steps
Number of steps taken in the evaluation.
Definition network.h:67
gridfire::approx8::Approx8Net::iTemp
static constexpr int iTemp
Definition engine_approx8.h:73
gridfire::approx8::Approx8Net::iEnergy
static constexpr int iEnergy
Definition engine_approx8.h:75
gridfire::approx8::Approx8Net::in14
static constexpr int in14
Definition engine_approx8.h:68
gridfire::approx8::Approx8Net::aIon
static constexpr std::array< int, nIso > aIon
Definition engine_approx8.h:80
gridfire::approx8::Approx8Net::nIso
static constexpr int nIso
Definition engine_approx8.h:77
gridfire::approx8::Approx8Net::iDensity
static constexpr int iDensity
Definition engine_approx8.h:74
gridfire::approx8::Approx8Net::nVar
static constexpr int nVar
Definition engine_approx8.h:78
gridfire::approx8::Approx8Net::ihe4
static constexpr int ihe4
Definition engine_approx8.h:66
gridfire::approx8::Approx8Net::mIon
static constexpr std::array< double, nIso > mIon
Definition engine_approx8.h:91
gridfire::approx8::Approx8Net::ic12
static constexpr int ic12
Definition engine_approx8.h:67
gridfire::approx8::Approx8Net::img24
static constexpr int img24
Definition engine_approx8.h:71
gridfire::approx8::Approx8Net::ihe3
static constexpr int ihe3
Definition engine_approx8.h:65
gridfire::approx8::Approx8Net::io16
static constexpr int io16
Definition engine_approx8.h:69
gridfire::approx8::Approx8Net::ih1
static constexpr int ih1
Definition engine_approx8.h:64
gridfire::approx8::Approx8Net::ine20
static constexpr int ine20
Definition engine_approx8.h:70
gridfire::approx8::Jacobian
Functor to calculate the Jacobian matrix for implicit solvers.
Definition engine_approx8.h:267
gridfire::approx8::Jacobian::operator()
void operator()(const vector_type &y, matrix_type &J, double, vector_type &dfdt) const
Calculates the Jacobian matrix.
Definition engine_approx8.cpp:243
gridfire::approx8::ODE
Functor to calculate the derivatives for the ODE solver.
Definition engine_approx8.h:281
gridfire::approx8::ODE::operator()
void operator()(const vector_type &y, vector_type &dydt, double) const
Calculates the derivatives of the state vector.
Definition engine_approx8.cpp:348