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gridfire::MultiscalePartitioningEngineView Member List

This is the complete list of members for gridfire::MultiscalePartitioningEngineView, including all inherited members.

analyzeTimescalePoolConnectivity(const std::vector< std::vector< fourdst::atomic::Species > > &timescale_pools, const fourdst::composition::Composition &comp, double T9, double rho) const | gridfire::MultiscalePartitioningEngineView |
buildConnectivityGraph(const std::vector< fourdst::atomic::Species > &species_pool) const | gridfire::MultiscalePartitioningEngineView | private
calculateEpsDerivatives(const fourdst::composition::Composition &comp, double T9, double rho) const override | gridfire::MultiscalePartitioningEngineView | virtual
calculateMolarReactionFlow(const reaction::Reaction &reaction, const fourdst::composition::Composition &comp, double T9, double rho) const override | gridfire::MultiscalePartitioningEngineView | virtual
calculateRHSAndEnergy(const fourdst::composition::Composition &comp, double T9, double rho) const override | gridfire::MultiscalePartitioningEngineView | virtual
collectComposition(fourdst::composition::Composition &comp) const override | gridfire::MultiscalePartitioningEngineView | virtual
constructCandidateGroups(const std::vector< std::vector< fourdst::atomic::Species > > &candidate_pools, const fourdst::composition::Composition &comp, double T9, double rho) const | gridfire::MultiscalePartitioningEngineView | private
equilibrateNetwork(const fourdst::composition::Composition &comp, double T9, double rho) | gridfire::MultiscalePartitioningEngineView |
equilibrateNetwork(const NetIn &netIn) | gridfire::MultiscalePartitioningEngineView |
exportToDot(const std::string &filename, const fourdst::composition::Composition &comp, double T9, double rho) const | gridfire::MultiscalePartitioningEngineView |
generateJacobianMatrix(const fourdst::composition::Composition &comp, double T9, double rho) const override | gridfire::MultiscalePartitioningEngineView | virtual
generateJacobianMatrix(const fourdst::composition::Composition &comp, double T9, double rho, const std::vector< fourdst::atomic::Species > &activeSpecies) const override | gridfire::MultiscalePartitioningEngineView | virtual
generateJacobianMatrix(const fourdst::composition::Composition &comp, double T9, double rho, const SparsityPattern &sparsityPattern) const override | gridfire::MultiscalePartitioningEngineView | virtual
generateStoichiometryMatrix() override | gridfire::MultiscalePartitioningEngineView | virtual
getBaseEngine() const override | gridfire::MultiscalePartitioningEngineView | virtual
getDepth() const | gridfire::DynamicEngine | inlinevirtual
getDynamicSpecies() const | gridfire::MultiscalePartitioningEngineView |
getFastSpecies() const | gridfire::MultiscalePartitioningEngineView |
getJacobianMatrixEntry(const fourdst::atomic::Species &rowSpecies, const fourdst::atomic::Species &colSpecies) const override | gridfire::MultiscalePartitioningEngineView | virtual
getNetworkReactions() const override | gridfire::MultiscalePartitioningEngineView | virtual
getNetworkSpecies() const override | gridfire::MultiscalePartitioningEngineView | virtual
getScreeningModel() const override | gridfire::MultiscalePartitioningEngineView | virtual
getSpeciesDestructionTimescales(const fourdst::composition::Composition &comp, double T9, double rho) const override | gridfire::MultiscalePartitioningEngineView | virtual
getSpeciesIndex(const fourdst::atomic::Species &species) const override | gridfire::MultiscalePartitioningEngineView | virtual
getSpeciesTimescales(const fourdst::composition::Composition &comp, double T9, double rho) const override | gridfire::MultiscalePartitioningEngineView | virtual
getStoichiometryMatrixEntry(const fourdst::atomic::Species &species, const reaction::Reaction &reaction) const override | gridfire::MultiscalePartitioningEngineView | virtual
identifyMeanSlowestPool(const std::vector< std::vector< fourdst::atomic::Species > > &pools, const fourdst::composition::Composition &comp, double T9, double rho) const | gridfire::MultiscalePartitioningEngineView | private
involvesSpecies(const fourdst::atomic::Species &species) const | gridfire::MultiscalePartitioningEngineView |
involvesSpeciesInDynamic(const fourdst::atomic::Species &species) const | gridfire::MultiscalePartitioningEngineView |
involvesSpeciesInQSE(const fourdst::atomic::Species &species) const | gridfire::MultiscalePartitioningEngineView |
isStale(const NetIn &netIn) override | gridfire::MultiscalePartitioningEngineView | virtual
m_activeReactionIndices | gridfire::MultiscalePartitioningEngineView | private
m_activeSpeciesIndices | gridfire::MultiscalePartitioningEngineView | private
m_algebraic_abundances | gridfire::MultiscalePartitioningEngineView | private
m_algebraic_species | gridfire::MultiscalePartitioningEngineView | private
m_baseEngine | gridfire::MultiscalePartitioningEngineView | private
m_cacheStats | gridfire::MultiscalePartitioningEngineView | mutableprivate
m_dynamic_species | gridfire::MultiscalePartitioningEngineView | private
m_logger | gridfire::MultiscalePartitioningEngineView | private
m_qse_abundance_cache | gridfire::MultiscalePartitioningEngineView | mutableprivate
m_qse_groups | gridfire::MultiscalePartitioningEngineView | private
mapNetInToMolarAbundanceVector(const NetIn &netIn) const override | gridfire::MultiscalePartitioningEngineView | virtual
MultiscalePartitioningEngineView(DynamicEngine &baseEngine) | gridfire::MultiscalePartitioningEngineView | explicit
partitionByTimescale(const fourdst::composition::Composition &comp, double T9, double rho) const | gridfire::MultiscalePartitioningEngineView | private
partitionNetwork(const fourdst::composition::Composition &comp, double T9, double rho) | gridfire::MultiscalePartitioningEngineView |
partitionNetwork(const NetIn &netIn) | gridfire::MultiscalePartitioningEngineView |
primeEngine(const NetIn &netIn) override | gridfire::MultiscalePartitioningEngineView | virtual
QSEPartition typedef | gridfire::MultiscalePartitioningEngineView | private
rebuild(const fourdst::composition::Composition &comp, BuildDepthType depth) | gridfire::DynamicEngine | inlinevirtual
setNetworkReactions(const reaction::ReactionSet &reactions) override | gridfire::MultiscalePartitioningEngineView | virtual
setScreeningModel(screening::ScreeningType model) override | gridfire::MultiscalePartitioningEngineView | virtual
solveQSEAbundances(const fourdst::composition::Composition &comp, double T9, double rho) | gridfire::MultiscalePartitioningEngineView | private
update(const NetIn &netIn) override | gridfire::MultiscalePartitioningEngineView | virtual
validateGroupsWithFluxAnalysis(const std::vector< QSEGroup > &candidate_groups, const fourdst::composition::Composition &comp, double T9, double rho) const | gridfire::MultiscalePartitioningEngineView | private
~Engine()=default | gridfire::Engine | virtual
~EngineView()=default | gridfire::EngineView< DynamicEngine > | virtual