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gridfire::engine::MultiscalePartitioningEngineView Member List

This is the complete list of members for gridfire::engine::MultiscalePartitioningEngineView, including all inherited members.

analyzeTimescalePoolConnectivity(const std::vector< std::vector< fourdst::atomic::Species > > &timescale_pools, const fourdst::composition::Composition &comp, double T9, double rho) const | gridfire::engine::MultiscalePartitioningEngineView | private
buildConnectivityGraph(const std::vector< fourdst::atomic::Species > &species_pool, const fourdst::composition::Composition &comp, double T9, double rho) const | gridfire::engine::MultiscalePartitioningEngineView | private
calculateEpsDerivatives(const fourdst::composition::CompositionAbstract &comp, double T9, double rho) const override | gridfire::engine::MultiscalePartitioningEngineView | virtual
calculateMolarReactionFlow(const reaction::Reaction &reaction, const fourdst::composition::CompositionAbstract &comp, double T9, double rho) const override | gridfire::engine::MultiscalePartitioningEngineView | virtual
calculateRHSAndEnergy(const fourdst::composition::CompositionAbstract &comp, double T9, double rho) const override | gridfire::engine::MultiscalePartitioningEngineView | virtual
collectComposition(const fourdst::composition::CompositionAbstract &comp, double T9, double rho) const override | gridfire::engine::MultiscalePartitioningEngineView | virtual
constructCandidateGroups(const std::vector< std::vector< fourdst::atomic::Species > > &candidate_pools, const fourdst::composition::Composition &comp, double T9, double rho) const | gridfire::engine::MultiscalePartitioningEngineView | private
exportToDot(const std::string &filename, const fourdst::composition::Composition &comp, double T9, double rho) const | gridfire::engine::MultiscalePartitioningEngineView |
generateJacobianMatrix(const fourdst::composition::CompositionAbstract &comp, double T9, double rho) const override | gridfire::engine::MultiscalePartitioningEngineView | virtual
generateJacobianMatrix(const fourdst::composition::CompositionAbstract &comp, double T9, double rho, const std::vector< fourdst::atomic::Species > &activeSpecies) const override | gridfire::engine::MultiscalePartitioningEngineView | virtual
generateJacobianMatrix(const fourdst::composition::CompositionAbstract &comp, double T9, double rho, const SparsityPattern &sparsityPattern) const override | gridfire::engine::MultiscalePartitioningEngineView | virtual
generateStoichiometryMatrix() override | gridfire::engine::MultiscalePartitioningEngineView | virtual
getBaseEngine() const override | gridfire::engine::MultiscalePartitioningEngineView | virtual
getDepth() const | gridfire::engine::DynamicEngine | inlinevirtual
getDynamicSpecies() const | gridfire::engine::MultiscalePartitioningEngineView |
getFastSpecies() const | gridfire::engine::MultiscalePartitioningEngineView |
getNetworkReactions() const override | gridfire::engine::MultiscalePartitioningEngineView | virtual
getNetworkSpecies() const override | gridfire::engine::MultiscalePartitioningEngineView | virtual
getNormalizedEquilibratedComposition(const fourdst::composition::CompositionAbstract &comp, double T9, double rho) const | gridfire::engine::MultiscalePartitioningEngineView |
getScreeningModel() const override | gridfire::engine::MultiscalePartitioningEngineView | virtual
getSpeciesDestructionTimescales(const fourdst::composition::CompositionAbstract &comp, double T9, double rho) const override | gridfire::engine::MultiscalePartitioningEngineView | virtual
getSpeciesIndex(const fourdst::atomic::Species &species) const override | gridfire::engine::MultiscalePartitioningEngineView | virtual
getSpeciesStatus(const fourdst::atomic::Species &species) const override | gridfire::engine::MultiscalePartitioningEngineView | virtual
getSpeciesTimescales(const fourdst::composition::CompositionAbstract &comp, double T9, double rho) const override | gridfire::engine::MultiscalePartitioningEngineView | virtual
getStoichiometryMatrixEntry(const fourdst::atomic::Species &species, const reaction::Reaction &reaction) const override | gridfire::engine::MultiscalePartitioningEngineView | virtual
group_is_a_qse_cluster(const fourdst::composition::Composition &comp, double T9, double rho, const QSEGroup &group) const | gridfire::engine::MultiscalePartitioningEngineView | private
group_is_a_qse_pipeline(const fourdst::composition::Composition &comp, double T9, double rho, const QSEGroup &group) const | gridfire::engine::MultiscalePartitioningEngineView | private
identifyMeanSlowestPool(const std::vector< std::vector< fourdst::atomic::Species > > &pools, const fourdst::composition::Composition &comp, double T9, double rho) const | gridfire::engine::MultiscalePartitioningEngineView | private
involvesSpecies(const fourdst::atomic::Species &species) const | gridfire::engine::MultiscalePartitioningEngineView |
involvesSpeciesInDynamic(const fourdst::atomic::Species &species) const | gridfire::engine::MultiscalePartitioningEngineView |
involvesSpeciesInQSE(const fourdst::atomic::Species &species) const | gridfire::engine::MultiscalePartitioningEngineView |
isStale(const NetIn &netIn) override | gridfire::engine::MultiscalePartitioningEngineView | virtual
m_activeReactionIndices | gridfire::engine::MultiscalePartitioningEngineView | private
m_activeSpeciesIndices | gridfire::engine::MultiscalePartitioningEngineView | private
m_algebraic_abundances | gridfire::engine::MultiscalePartitioningEngineView | private
m_algebraic_species | gridfire::engine::MultiscalePartitioningEngineView | private
m_baseEngine | gridfire::engine::MultiscalePartitioningEngineView | private
m_composition_cache | gridfire::engine::MultiscalePartitioningEngineView | mutableprivate
m_dynamic_species | gridfire::engine::MultiscalePartitioningEngineView | private
m_logger | gridfire::engine::MultiscalePartitioningEngineView | private
m_qse_groups | gridfire::engine::MultiscalePartitioningEngineView | private
m_qse_solvers | gridfire::engine::MultiscalePartitioningEngineView | private
m_sun_ctx | gridfire::engine::MultiscalePartitioningEngineView | private
mapNetInToMolarAbundanceVector(const NetIn &netIn) const override | gridfire::engine::MultiscalePartitioningEngineView | virtual
merge_coupled_groups(const std::vector< QSEGroup > &groups, const std::vector< reaction::ReactionSet > &groupReactions) | gridfire::engine::MultiscalePartitioningEngineView | privatestatic
MultiscalePartitioningEngineView(DynamicEngine &baseEngine) | gridfire::engine::MultiscalePartitioningEngineView | explicit
partitionByTimescale(const fourdst::composition::Composition &comp, double T9, double rho) const | gridfire::engine::MultiscalePartitioningEngineView | private
partitionNetwork(const NetIn &netIn) | gridfire::engine::MultiscalePartitioningEngineView |
primeEngine(const NetIn &netIn) override | gridfire::engine::MultiscalePartitioningEngineView | virtual
pruneValidatedGroups(const std::vector< QSEGroup > &groups, const std::vector< reaction::ReactionSet > &groupReactions, const fourdst::composition::Composition &comp, double T9, double rho) const | gridfire::engine::MultiscalePartitioningEngineView | private
QSEPartition typedef | gridfire::engine::MultiscalePartitioningEngineView | private
rebuild(const fourdst::composition::CompositionAbstract &comp, BuildDepthType depth) | gridfire::engine::DynamicEngine | inlinevirtual
setNetworkReactions(const reaction::ReactionSet &reactions) override | gridfire::engine::MultiscalePartitioningEngineView | virtual
setScreeningModel(screening::ScreeningType model) override | gridfire::engine::MultiscalePartitioningEngineView | virtual
solveQSEAbundances(const fourdst::composition::CompositionAbstract &comp, double T9, double rho) const | gridfire::engine::MultiscalePartitioningEngineView | private
update(const NetIn &netIn) override | gridfire::engine::MultiscalePartitioningEngineView | virtual
validateGroupsWithFluxAnalysis(const std::vector< QSEGroup > &candidate_groups, const fourdst::composition::Composition &comp, double T9, double rho) const | gridfire::engine::MultiscalePartitioningEngineView | private
~Engine()=default | gridfire::engine::Engine | virtual
~EngineView()=default | gridfire::engine::EngineView< DynamicEngine > | virtual
~MultiscalePartitioningEngineView() override | gridfire::engine::MultiscalePartitioningEngineView |